OryGenesDB: an interactive tool for rice reverse genetics
Names
More detailed information about this field from each metasource.
OryGenesDB: an interactive tool for rice reverse genetics
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
OryGenesDB
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
OryGenesDB: an interactive tool for rice reverse genetics
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
OryGenesDB
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
OryGenesDB: an interactive tool for rice reverse genetics
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
OryGenesDB
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
This source may no longer be available. No known URL could be resolved successfully.
The aim of this Oryza sativa database was first to display sequence information such as the T-DNA and Ds flanking sequence tags (FSTs) produced in the framework of the French genomics initiative Genoplante and the EU consortium Cereal Gene Tags. This information was later linked with related molecular data from external rice molecular resources (cDNA full length, Gene, EST, Markers, Expression data...).
Description
More detailed information about this field from each metasource.
The aim of this Oryza sativa database was first to display sequence information such as the T-DNA and Ds flanking sequence tags (FSTs) produced in the framework of the French genomics initiative Genoplante and the EU consortium Cereal Gene Tags. This information was later linked with related molecular data from external rice molecular resources (cDNA full length, Gene, EST, Markers, Expression data...).
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Rice genes, T-DNA and Ds flanking sequence tags
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://orygenesdb.cirad.fr/Webpage
More detailed information about this field from each metasource.
http://orygenesdb.cirad.fr/
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
OryGenesDB 2008 update: database interoperability for functional genomics of rice
PMID: 19036791
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
OryGenesDB 2008 update: database interoperability for functional genomics of rice
PMID: 19036791
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
-
OryGenesDB 2008 update: database interoperability for functional genomics of rice
PubMed citations: 12.
12 articles citing: OryGenesDB 2008 update: database interoperability for functional genomics of rice
Two genomic regions of a sodium azide induced rice mutant confer broad-spectrum and durable resistance to blast disease. PMID:35006368
Insertional Mutagenesis Approaches and Their Use in Rice for Functional Genomics. PMID:31470516
Fine mapping of RYMV3: a new resistance gene to Rice yellow mottle virus from Oryza glaberrima. PMID:28144699
Turning rice meiosis into mitosis. PMID:27767093
Genome-wide identification and evolutionary analysis of positively selected miRNA genes in domesticated rice. PMID:25362560
The banana genome hub. PMID:23707967
Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases. PMID:23586394
High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype. PMID:21457493
GreenPhylDB v2.0: comparative and functional genomics in plants. PMID:20864446
A genetic model for the female sterility barrier between Asian and African cultivated rice species. PMID:20457876
Natural and artificial mutants as valuable resources for functional genomics and molecular breeding. PMID:20440406
Genomics and bioinformatics resources for crop improvement. PMID:20208064
Tags:
Tags
More detailed information about this field from each metasource.
complementary dna
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
flanking region
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
sequence tag
metasource: Fairsharing.org
version: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
rice
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
complementary dna
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
flanking region
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
sequence tag
metasource: Fairsharing.orgversion: FAIRsharing.org: OryGenesDB; OryGenesDB: an interactive tool for rice reverse genetics; DOI: https://doi.org/10.25504/FAIRsharing.7m4hza; Last edited: April 26, 2021, 8:44 a.m.; Last accessed: Jan 03 2022 7:06 p.m.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
rice
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
complementary dna dna sequences dna flanking region gene gene expression sequence tag plant rice
Need help integrating and/or managing biomedical data?