A de novo regulation design shows an effectiveness in altering plant secondary metabolism.
PMID:35499047
Advances in Sensing, Response and Regulation Mechanism of Salt Tolerance in Rice.
PMID:33668247
CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa.
PMID:33306801
Structural and functional insights into the LBD family involved in abiotic stress and flavonoid synthases in Camellia sinensis.
PMID:31666570
Genes, pathways and transcription factors involved in seedling stage chilling stress tolerance in indica rice through RNA-Seq analysis.
PMID:31412781
Sheath blight of rice: a review and identification of priorities for future research.
PMID:31346804
A web-based tool for the prediction of rice transcription factor function.
PMID:31169887
Analysis of Rice Proteins with DLN Repressor Motif/S.
PMID:30935059
RiceMetaSysB: a database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes.
PMID:30753479
A compendium of transcription factor and Transcriptionally active protein coding gene families in cowpea (Vigna unguiculata L.).
PMID:29166879
Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq.
PMID:29047256
The Phosphoproteomic Response of Rice Seedlings to Cadmium Stress.
PMID:28953215
Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
PMID:28922793
Isoform Sequencing Provides a More Comprehensive View of the Panax ginseng Transcriptome.
PMID:28914759
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants.
PMID:27924042
Identification of Nitrogen Use Efficiency Genes in Barley: Searching for QTLs Controlling Complex Physiological Traits.
PMID:27818673
Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.).
PMID:27738714
A CONSTANS-like transcriptional activator, OsCOL13, functions as a negative regulator of flowering downstream of OsphyB and upstream of Ehd1 in rice.
PMID:27405463
Information Commons for Rice (IC4R).
PMID:26519466
Functions of OsDof25 in regulation of OsC4PPDK.
PMID:26337938
A comprehensive quantitative phosphoproteome analysis of rice in response to bacterial blight.
PMID:26112675
Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
PMID:26035591
REGULATOR: a database of metazoan transcription factors and maternal factors for developmental studies.
PMID:25880930
Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining.
PMID:25844119
Physiological, anatomical and transcriptional alterations in a rice mutant leading to enhanced water stress tolerance.
PMID:25818072
Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat.
PMID:25766308
Coordinated regulation of photosynthesis in rice increases yield and tolerance to environmental stress.
PMID:25358745
Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.).
PMID:25344821
A strategy for genome-wide identification of gene based polymorphisms in rice reveals non-synonymous variation and functional genotypic markers.
PMID:25237817
OsSLI1, a homeodomain containing transcription activator, involves abscisic acid related stress response in rice (Oryza sativa L.).
PMID:25089296
Genomic profiling of rice roots with short- and long-term chromium stress.
PMID:25056418
Analyses of hypomethylated oil palm gene space.
PMID:24497974
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors.
PMID:24174544
Rice DB: an Oryza Information Portal linking annotation, subcellular location, function, expression, regulation, and evolutionary information for rice and Arabidopsis.
PMID:24147765
Seed shattering in a wild sorghum is conferred by a locus unrelated to domestication.
PMID:24019506
Automated conserved non-coding sequence (CNS) discovery reveals differences in gene content and promoter evolution among grasses.
PMID:23874343
Autotoxicity mechanism of Oryza sativa: transcriptome response in rice roots exposed to ferulic acid.
PMID:23705659
RiceSRTFDB: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis.
PMID:23660286
Comparative analyses of nuclear proteome: extending its function.
PMID:23637696
Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
PMID:23410187
Genome-wide identification and analysis of the B3 superfamily of transcription factors in Brassicaceae and major crop plants.
PMID:23377560
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice.
PMID:23314754
TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics.
PMID:23284086
The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis.
PMID:23118960
Transcriptomic changes and signalling pathways induced by arsenic stress in rice roots.
PMID:22987115
Genome-wide gene expression profiling of introgressed indica rice alleles associated with seedling cold tolerance improvement in a japonica rice background.
PMID:22953761
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
PMID:22807623
Genome-wide analysis of the complex transcriptional networks of rice developing seeds.
PMID:22363552
Identification of transcriptome profiles and signaling pathways for the allelochemical juglone in rice roots.
PMID:22065257
In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants.
PMID:21729923
Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.
PMID:21694767
Genome-wide temporal-spatial gene expression profiling of drought responsiveness in rice.
PMID:21406116
Common and distinct organ and stress responsive transcriptomic patterns in Oryza sativa and Arabidopsis thaliana.
PMID:21106056
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database.
PMID:21097470
Global gene profiling of laser-captured pollen mother cells indicates molecular pathways and gene subfamilies involved in rice meiosis.
PMID:20959420
Biomedical text summarization to support genetic database curation: using Semantic MEDLINE to create a secondary database of genetic information.
PMID:20936065
Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity.
PMID:20644220
An expression analysis of 57 transcription factors derived from ESTs of developing seeds in Maize (Zea mays).
PMID:20336461
wDBTF: an integrated database resource for studying wheat transcription factor families.
PMID:20298594
Genomics and bioinformatics resources for crop improvement.
PMID:20208064
TobEA: an atlas of tobacco gene expression from seed to senescence.
PMID:20187945
Systematic analysis of GT factor family of rice reveals a novel subfamily involved in stress responses.
PMID:20039179
Genome-wide identification and evolutionary analysis of the animal specific ETS transcription factor family.
PMID:20011068
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
PMID:19936069
In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean.
PMID:19884168
Comparative analyses of plant transcription factor databases.
PMID:19721806
Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings.
PMID:19605549
Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings.
PMID:19571305
Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process.
PMID:19074628
Bioinformatics in China: a personal perspective.
PMID:18437216
Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants.
PMID:18426584
Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae.
PMID:18337489
Sequencing and analysis of the gene-rich space of cowpea.
PMID:18304330
TOBFAC: the database of tobacco transcription factors.
PMID:18221524
GreenPhylDB: a database for plant comparative genomics.
PMID:17986457
PlantTFDB: a comprehensive plant transcription factor database.
PMID:17933783
A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors.
PMID:17559651
PlanTAPDB, a phylogeny-based resource of plant transcription-associated proteins.
PMID:17337525
PlnTFDB: an integrative plant transcription factor database.
PMID:17286856