Cell Line Ontology
Names
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Cell Line Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
metasource: Biontology / Bioportal
version: 2.1.178 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CLO
CLO
metasource: Fairsharing.org
version: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
metasource: Biontology / Bioportal
version: 2.1.178 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CLO
Names
More detailed information about this field from each metasource.
Cell Line Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
metasource: Biontology / Bioportal
version: 2.1.178 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CLO
CLO
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
metasource: Biontology / Bioportal
version: 2.1.178 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CLO
Names
More detailed information about this field from each metasource.
Cell Line Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
metasource: Biontology / Bioportal
version: 2.1.178 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CLO
CLO
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
metasource: Biontology / Bioportal
version: 2.1.178 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CLO
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The Cell Line Ontology (CLO) is a community-driven ontology that is developed to standardize and integrate cell line information and support computer-assisted reasoning. Thousands of cell lines have been artificially developed and used for different applications. Integration of data from multiple sources is a challenge, confounded by lack of consistent naming conventions, contamination of cell lines, and provision of the same cell lines by multiple commercial sources but with different biological attributes. CLO is a community-based effort to represent all cell lines in a standard ontology approach.
Description
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The Cell Line Ontology (CLO) is a community-driven ontology that is developed to standardize and integrate cell line information and support computer-assisted reasoning. Thousands of cell lines have been artificially developed and used for different applications. Integration of data from multiple sources is a challenge, confounded by lack of consistent naming conventions, contamination of cell lines, and provision of the same cell lines by multiple commercial sources but with different biological attributes. CLO is a community-based effort to represent all cell lines in a standard ontology approach.
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
The Cell Line Ontology (CLO) is a community-based ontology in domain of biological cell lines with a focus on permanent cell lines from culture collections. Upper ontology structures that frame the skeleton of CLO include Basic Formal Ontology and Relation Ontology. Cell lines contained in CLO are associated with terms from other ontologies such as Cell Type Ontology, NCBI Taxonomy, and Ontology for Biomedical Investigation. A common design pattern for the cell line is used to model cell lines and their attributes, the Jurkat cell line provides ane xample. Currently CLO contains over 36,000 cell line entries obtained from ATCC, HyperCLDB, Coriell, and bymanual curation. The cell lines are derived from 194 cell types, 656 anatomical entries, and 217 organisms. The OWL-based CLO is machine-readable and can be used in various applications.
metasource: Biontology / Bioportalversion: 2.1.178 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CLO
Webpage:
http://www.clo-ontology.org/Webpage
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http://www.clo-ontology.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
metasource: Biontology / Bioportal
version: 2.1.178 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CLO
Licence:
Name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)Licence name
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Creative Commons Attribution 3.0 Unported (CC BY 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Licence URL
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https://creativecommons.org/licenses/by/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
CLO: The cell line ontology
PMID: 25852852
metasource: Fairsharing.org
version: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
http://www.jbiomedsem.com/content/5/1/37
metasource: Biontology / Bioportal
version: 2.1.178 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CLO
Publications
More detailed information about this field from each metasource.
CLO: The cell line ontology
PMID: 25852852
metasource: Fairsharing.org
version: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
http://www.jbiomedsem.com/content/5/1/37
metasource: Biontology / Bioportalversion: 2.1.178 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/CLO
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CLO: The cell line ontology
PubMed citations: 56.
56 articles citing: CLO: The cell line ontology
Elucidating gene expression patterns across multiple biological contexts through a large-scale investigation of transcriptomic datasets. PMID:35705903
IMEx Databases: Displaying Molecular Interactions into a Single, Standards-Compliant Dataset. PMID:35507258
Ontologies and Knowledge Graphs in Oncology Research. PMID:35454813
Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation. PMID:35101121
NETME: on-the-fly knowledge network construction from biomedical literature. PMID:35013714
Expression Atlas update: gene and protein expression in multiple species. PMID:34850121
The IntAct database: efficient access to fine-grained molecular interaction data. PMID:34761267
Experiment level curation of transcriptional regulatory interactions in neurodevelopment. PMID:34665801
UniBind: maps of high-confidence direct TF-DNA interactions across nine species. PMID:34174819
Precision omics data integration and analysis with interoperable ontologies and their application for COVID-19 research. PMID:34159360
MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses. PMID:34156446
Integrative web-based analysis of omics data for study of drugs against SARS-CoV-2. PMID:34031435
FOntCell: Fusion of Ontologies of Cells. PMID:33644039
Curation of over 10 000 transcriptomic studies to enable data reuse. PMID:33599246
CMNPD: a comprehensive marine natural products database towards facilitating drug discovery from the ocean. PMID:32986829
Extending the Minimum Information About BIobank Data Sharing Terminology to Describe Samples, Sample Donors, and Events. PMID:32302498
Machine and deep learning approaches for cancer drug repurposing. PMID:31904426
SEAweb: the small RNA Expression Atlas web application. PMID:31598718
Rationalized Development of a Campus-Wide Cell Line Dataset for Implementation in the Biobank LIMS System at Bioresource Center Ghent. PMID:31294023
OSCI: standardized stem cell ontology representation and use cases for stem cell investigation. PMID:31272389
Cells in ExperimentaL Life Sciences (CELLS-2018): capturing the knowledge of normal and diseased cells with ontologies. PMID:31272374
An ontology for representing hematologic malignancies: the cancer cell ontology. PMID:31272372
The cell line ontology-based representation, integration and analysis of cell lines used in China. PMID:31272367
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language. PMID:31225582
ODAE: Ontology-based systematic representation and analysis of drug adverse events and its usage in study of adverse events given different patient age and disease conditions. PMID:31074377
Improving the Utility of the Tox21 Dataset by Deep Metadata Annotations and Constructing Reusable Benchmarked Chemical Reference Signatures. PMID:31018579
Discovery of Emerging Design Patterns in Ontologies Using Tree Mining. PMID:30505251
The BioGRID interaction database: 2019 update. PMID:30476227
ChEMBL: towards direct deposition of bioassay data. PMID:30398643
Victors: a web-based knowledge base of virulence factors in human and animal pathogens. PMID:30365026
The Immune Epitope Database (IEDB): 2018 update. PMID:30357391
The jPOST environment: an integrated proteomics data repository and database. PMID:30295851
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. PMID:30012108
Sustainable data and metadata management at the BD2K-LINCS Data Coordination and Integration Center. PMID:29917015
A guideline for reporting experimental protocols in life sciences. PMID:29868256
Sharing and reusing cell image data. PMID:29851565
The Cellosaurus, a Cell-Line Knowledge Resource. PMID:29805321
Identification of errors in the IEDB using ontologies. PMID:29688357
Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses. PMID:29322930
Comparison, alignment, and synchronization of cell line information between CLO and EFO. PMID:29322915
Usage of cell nomenclature in biomedical literature. PMID:29322912
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data. PMID:29140462
Using semantics for representing experimental protocols. PMID:29132408
Ontology-based systematical representation and drug class effect analysis of package insert-reported adverse events associated with cardiovascular drugs used in China. PMID:29061976
SCPortalen: human and mouse single-cell centric database. PMID:29045713
Tissue specificity of in vitro drug sensitivity. PMID:29016819
Better living through ontologies at the Immune Epitope Database. PMID:28365732
The ChEMBL database in 2017. PMID:27899562
The BLUEPRINT Data Analysis Portal. PMID:27863955
Community-based Ontology Development, Annotation and Discussion with MediaWiki extension Ontokiwi and Ontokiwi-based Ontobedia. PMID:27570653
Ontology-based Vaccine and Drug Adverse Event Representation and Theory-guided Systematic Causal Network Analysis toward Integrative Pharmacovigilance Research. PMID:27458549
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
Linking rare and common disease: mapping clinical disease-phenotypes to ontologies in therapeutic target validation. PMID:27011785
Ontology-based representation and analysis of host-Brucella interactions. PMID:26445639
Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns. PMID:25785185
Ontology-supported research on vaccine efficacy, safety and integrative biological networks. PMID:24909153 - http://www.jbiomedsem.com/content/5/1/37
Tags:
Tags
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cell
metasource: Fairsharing.org
version: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
cell line
metasource: Fairsharing.org
version: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
morphology
metasource: Fairsharing.org
version: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
Tags
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cell
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
cell line
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
morphology
metasource: Fairsharing.orgversion: FAIRsharing.org: CLO; Cell Line Ontology; DOI: https://doi.org/10.25504/FAIRsharing.4dvtcz; Last edited: Aug. 7, 2019, 2:59 p.m.; Last accessed: Jan 03 2022 7:10 p.m.
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