Insertion Sequence Finder
Names
More detailed information about this field from each metasource.
Insertion Sequence Finder
metasource: Fairsharing.org
version: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
IS Finder
metasource: Fairsharing.org
version: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Isfinder
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
ISfinder
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.354592
isfinder
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.354592
Names
More detailed information about this field from each metasource.
Insertion Sequence Finder
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
IS Finder
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Isfinder
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
ISfinder
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:08.354592
isfinder
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:08.354592
Other names: IS Finder, Isfinder, ISfinder, isfinder
Names
More detailed information about this field from each metasource.
Insertion Sequence Finder
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
IS Finder
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Isfinder
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
ISfinder
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:08.354592
isfinder
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:08.354592
This database provides a list of insertion sequences (IS) isolated from bacteria and archae. It is organized into individual files containing their general features (name, size, origin, family.....) as well as their DNA and potential protein sequences. Some of the entries have been identified as individual elements by their insertion activities but a growing number are included from their description in sequenced bacterial genomes. It also includes certain transposons, in particular, members of the Tn3 family of replicative transposons.
Description
More detailed information about this field from each metasource.
This database provides a list of insertion sequences (IS) isolated from bacteria and archae. It is organized into individual files containing their general features (name, size, origin, family.....) as well as their DNA and potential protein sequences. Some of the entries have been identified as individual elements by their insertion activities but a growing number are included from their description in sequenced bacterial genomes. It also includes certain transposons, in particular, members of the Tn3 family of replicative transposons.
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ISfinder (http://www-is.biotoul.fr) is a dedicated database for bacterial Insertion Sequences (IS). It has superseded the Stanford reference center. One of its functions is to assign IS names and to provide a focal point for a coherent nomenclature. It is also the repository for IS sequences. Each new IS is indexed together with information such as its DNA sequence and open reading frames or potential coding sequences, the sequence of the ends of the element and target sites, its origin and distribution together with a bibliography where available. Another objective is to continuously monitor ISs to provide updated comprehensive groupings or families and to provide some insight into their phylogenies. The site also contains extensive background information on Insertion Sequences and transposons in general. On-line tools are gradually being added. At present an on-line BLAST facility against the entire bank is available. Additional features will include alignment capability, PSI-BLAST and HMM profiles. ISfinder also includes a section on bacterial genomes and is involved in annotating the IS content of these genomes. Finally, this database is currently recommended by several microbiology journals for registration of new IS elements before their publication.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
It is a dedicated insertion sequence (IS) database which assigns names to individual ISs to maintain a coherent nomenclature, an IS repositaory including >3000 individual ISs from both bacteria and archaea and provides a basis for IS classification. Each IS is indexed in ISfinder with various associated pieces of information and classified into a group or family to provide some insight into its phylogeny.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:08.354592
Webpage:
http://www-is.biotoul.frWebpage
More detailed information about this field from each metasource.
http://www-is.biotoul.fr
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.354592
http://www-is.biotoul.fr/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
ISfinder: the reference centre for bacterial insertion sequences
PMID: 16381877
metasource: Fairsharing.org
version: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomes
PMID: 19906702
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.354592
Publications
More detailed information about this field from each metasource.
ISfinder: the reference centre for bacterial insertion sequences
PMID: 16381877
metasource: Fairsharing.org
version: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomes
PMID: 19906702
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.354592
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ISfinder: the reference centre for bacterial insertion sequences
PubMed citations: 990.
990 articles citing: ISfinder: the reference centre for bacterial insertion sequences
Comparative genomics of Leuconostoc lactis strains isolated from human gastrointestinal system and fermented foods microbiomes. PMID:35918643
Investigation of memory-enhancing effects of Streptococcus thermophilus EG007 in mice and elucidating molecular and metagenomic characteristics using nanopore sequencing. PMID:35918353
Complete gammaproteobacterial endosymbiont genome assembly from a seep tubeworm Lamellibrachia satsuma. PMID:35913594
Chromosomal integration of bla CTX-M genes in diverse Escherichia coli isolates recovered from river water in Japan. PMID:35909619
Antibiotic resistance genes are differentially mobilized according to resistance mechanism. PMID:35906888
Convergence of MCR-8.2 and Chromosome-Mediated Resistance to Colistin and Tigecycline in an NDM-5-Producing ST656 Klebsiella pneumoniae Isolate From a Lung Transplant Patient in China. PMID:35899054
Genomic Analysis of an I1 Plasmid Hosting a sul3-Class 1 Integron and blaSHV-12 within an Unusual Escherichia coli ST297 from Urban Wildlife. PMID:35889108
Identification of Mobile Colistin Resistance Gene mcr-10 in Disinfectant and Antibiotic Resistant Escherichia coli from Disinfected Tableware. PMID:35884137
Genomic Insights Into the Interspecific Diversity and Evolution of Mobiluncus, a Pathogen Associated With Bacterial Vaginosis. PMID:35865929
Genomic Insight Into Lacticaseibacillus paracasei SP5, Reveals Genes and Gene Clusters of Probiotic Interest and Biotechnological Potential. PMID:35783439
Genomic Analysis of KPC-2-Producing Klebsiella pneumoniae ST11 Isolates at the Respiratory Department of a Tertiary Care Hospital in Beijing, China. PMID:35783384
Genomic Characterization of Mutli-Drug Resistant Pseudomonas aeruginosa Clinical Isolates: Evaluation and Determination of Ceftolozane/Tazobactam Activity and Resistance Mechanisms. PMID:35782142
Comparison of Propionibacterium genomes: CRISPR-Cas systems, phage/plasmid diversity, and insertion sequences. PMID:35763226
Identification of a Stable Chromosomal Tandem Multicopy of blaVIM-63, a New blaVIM-2 Carbapenemase. PMID:35758752
Metagenomic analysis of the gut microbiota in piglets either challenged or not with enterotoxigenic Escherichia coli reveals beneficial effects of probiotics on microbiome composition, resistome, digestive function and oxidative stress responses. PMID:35749527
Isolation, Molecular Characterization, and Antimicrobial Resistance of Selected Culturable Bacteria From Crayfish (Procambarus clarkii). PMID:35747368
Colonization of White-Tailed Deer (Odocoileus virginianus) from Urban and Suburban Environments with Cephalosporinase- and Carbapenemase-Producing Enterobacterales. PMID:35736227
From a large-scale genomic analysis of insertion sequences to insights into their regulatory roles in prokaryotes. PMID:35725380
Coexistence of bla NDM-1 and bla IMP-4 in One Novel Hybrid Plasmid Confers Transferable Carbapenem Resistance in an ST20-K28 Klebsiella pneumoniae. PMID:35711757
Globally distributed mining-impacted environments are underexplored hotspots of multidrug resistance genes. PMID:35688988
Genomic and Temporal Trends in Canine ExPEC Reflect Those of Human ExPEC. PMID:35674442
Widespread phages of endosymbionts: Phage WO genomics and the proposed taxonomic classification of Symbioviridae. PMID:35666732
Emergence of bla NDM- 1-Carrying Aeromonas caviae K433 Isolated From Patient With Community-Acquired Pneumonia. PMID:35663877
Emergence of a Carbapenem-Resistant Klebsiella pneumoniae Isolate Co-harbouring Dual bla NDM- 6 -Carrying Plasmids in China. PMID:35663874
Transmission of pLVPK-like virulence plasmid in Klebsiella pneumoniae mediated by an Incl1 conjugative helper plasmid. PMID:35663037
Comparative in silico characterization of Klebsiella pneumoniae hypervirulent plasmids and their antimicrobial resistance genes. PMID:35655313
Risk Factors for the Development of Colistin Resistance during Colistin Treatment of Carbapenem-Resistant Klebsiella pneumoniae Infections. PMID:35652641
Coexistence of tmexCD-toprJ, blaNDM-1, and blaIMP-4 in One Plasmid Carried by Clinical Klebsiella spp. PMID:35647621
5NosoAE: a web server for nosocomial bacterial antibiogram investigation and epidemiology survey. PMID:35639518
Origin, Phylogeny, and Transmission of the Epidemic Clone ST208 of Carbapenem-Resistant Acinetobacter baumannii on a Global Scale. PMID:35638783
High-Resolution Metagenomics of Human Gut Microbiota Generated by Nanopore and Illumina Hybrid Metagenome Assembly. PMID:35633679
Characterization of Three Novel Virulent Aeromonas Phages Provides Insights into the Diversity of the Autographiviridae Family. PMID:35632757
The Notable Achievements and the Prospects of Bacterial Pathogen Genomics. PMID:35630482
Preclinical Safety Assessment of Bacillus subtilis BS50 for Probiotic and Food Applications. PMID:35630480
Inverse PCR-based detection reveal novel mobile genetic elements and their associated genes in the human oral metagenome. PMID:35624467
Pangenome analyses of Bacillus pumilus, Bacillus safensis, and Priestia megaterium exploring the plant-associated features of bacilli strains isolated from canola. PMID:35612623
Genomic-based transmission analysis of carbapenem-resistant Pseudomonas aeruginosa at a tertiary care centre in Cologne (Germany) from 2015 to 2020. PMID:35611260
Colistin Resistance and Molecular Characterization of the Genomes of mcr-1-Positive Escherichia coli Clinical Isolates. PMID:35601104
icaR and icaT are Ancient Chromosome Genes Encoding Substrates of the Type III Secretion Apparatus in Shigella flexneri. PMID:35582904
Comparative Genomic Analysis of Vibrio cincinnatiensis Provides Insights into Genetic Diversity, Evolutionary Dynamics, and Pathogenic Traits of the Species. PMID:35562911
B-assembler: a circular bacterial genome assembler. PMID:35546658
VRprofile2: detection of antibiotic resistance-associated mobilome in bacterial pathogens. PMID:35524563
Prediction and Inferred Evolution of Acid Tolerance Genes in the Biotechnologically Important Acidihalobacter Genus. PMID:35516430
First Identification of a Multidrug-Resistant Pseudomonas putida Co-Carrying Five β-Lactam Resistance Genes Recovered from a Urinary Tract Infection in China. PMID:35510158
Acquisition of Daptomycin Resistance by Enterococcus faecium Confers Collateral Sensitivity to Glycopeptides. PMID:35495706
Genomic Characterization of a Uropathogenic Escherichia coli ST405 Isolate Harboring bla CTX-M-15-Encoding IncFIA-FIB Plasmid, bla CTX-M-24-Encoding IncI1 Plasmid, and Phage-Like Plasmid. PMID:35479623
Urban Wildlife Crisis: Australian Silver Gull Is a Bystander Host to Widespread Clinical Antibiotic Resistance. PMID:35469421
Epidemiology of Klebsiella michiganensis Carrying Multidrug-Resistant IncHI5 Plasmids in the Southeast Coastal Area of China. PMID:35444429
Wild Boars as an Indicator of Environmental Spread of ESβL-Producing Escherichia coli. PMID:35432265
Emergence of a Multidrug-Resistant Escherichia coli Co-Carrying a New mcr-1.33 Variant and bla NDM-5 Genes Recovered from a Urinary Tract Infection. PMID:35411158
blaKPC-2-Encoding IncP-6 Plasmids in Citrobacter freundii and Klebsiella variicola Strains from Hospital Sewage in Japan. PMID:35380451
Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance. PMID:35379360
Complete Genome Sequence of a Rare Pigment-Producing Strain of Acinetobacter johnsonii, Isolated from the Bile of a Patient in Hangzhou, China. PMID:35377178
Emergence of an ST1326 (CG258) Multi-Drug Resistant Klebsiella pneumoniae Co-harboring mcr-8.2, ESBL Genes, and the Resistance-Nodulation-Division Efflux Pump Gene Cluster tmexCD1-toprJ1 in China. PMID:35369441
Intra- and interpopulation transposition of mobile genetic elements driven by antibiotic selection. PMID:35347261
IncFIB-4.1 and IncFIB-4.2 Single-Replicon Plasmids: Small Backbones with Large Accessory Regions. PMID:35345473
Genomic Surveillance of Vancomycin-Resistant Enterococcus faecium Reveals Spread of a Linear Plasmid Conferring a Nutrient Utilization Advantage. PMID:35343787
Draft Genome Sequence of Lactococcus lactis Subsp. cremoris WA2-67: A Promising Nisin-Producing Probiotic Strain Isolated from the Rearing Environment of a Spanish Rainbow Trout (Oncorhynchus mykiss, Walbaum) Farm. PMID:35336097
Decoding the Gene Variants of Two Native Probiotic Lactiplantibacillus plantarum Strains through Whole-Genome Resequencing: Insights into Bacterial Adaptability to Stressors and Antimicrobial Strength. PMID:35327997
Active Transposition of Insertion Sequences in Prokaryotes: Insights from the Response of Deinococcus geothermalis to Oxidative Stress. PMID:35326130
Landscape of mobile genetic elements and their antibiotic resistance cargo in prokaryotic genomes. PMID:35323968
Assessment of global health risk of antibiotic resistance genes. PMID:35322038
Whole genome sequencing of Klebsiella pneumoniae clinical isolates sequence type 627 isolated from Egyptian patients. PMID:35320327
Transcriptional Regulation and Functional Characterization of the Plasmid-Borne oqxAB Genes in Salmonella Typhimurium. PMID:35315694
Kaptive 2.0: updated capsule and lipopolysaccharide locus typing for the Klebsiella pneumoniae species complex. PMID:35311639
The Role of Plasmid and Resistance Gene Acquisition in the Emergence of ST23 Multi-Drug Resistant, Hypervirulent Klebsiella pneumoniae. PMID:35297657
Genetic Characteristics of the Transmissible Locus of Stress Tolerance (tLST) and tLST Harboring Escherichia coli as Revealed by Large-Scale Genomic Analysis. PMID:35285715
A curated collection of Klebsiella metabolic models reveals variable substrate usage and gene essentiality. PMID:35277433
Genetic and virulence characteristics of a Raoultella planticola isolate resistant to carbapenem and tigecycline. PMID:35264602
VIM-encoding IncpSTY plasmids and chromosome-borne integrative and mobilizable elements (IMEs) and integrative and conjugative elements (ICEs) in Pseudomonas. PMID:35264204
Integrative Assessments on Molecular Taxonomy of Acidiferrobacter thiooxydans ZJ and Its Environmental Adaptation Based on Mobile Genetic Elements. PMID:35250944
Genomic Insights on Variation Underlying Capsule Expression in Meningococcal Carriage Isolates From University Students, United States, 2015-2016. PMID:35250931
Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM. PMID:35241674
Metagenomic Insights into Chicken Gut Antibiotic Resistomes and Microbiomes. PMID:35230155
Pan-Genome Analysis of Delftia tsuruhatensis Reveals Important Traits Concerning the Genetic Diversity, Pathogenicity, and Biotechnological Properties of the Species. PMID:35230132
Metabacillus dongyingensis sp. nov. Is Represented by the Plant Growth-Promoting Bacterium BY2G20 Isolated from Saline-Alkaline Soil and Enhances the Growth of Zea mays L. under Salt Stress. PMID:35229649
Diversity in the Characteristics of Klebsiella pneumoniae ST101 of Human, Environmental, and Animal Origin. PMID:35222344
Similarities in Virulence and Extended Spectrum Beta-Lactamase Gene Profiles among Cefotaxime-Resistant Escherichia coli Wastewater and Clinical Isolates. PMID:35203862
Comparative genomics and evolutionary analysis of Lactococcus garvieae isolated from human endocarditis. PMID:35196218
Phylogenetic Comparison and Characterization of an mcr-1-Harboring Complete Plasmid Genome Isolated from Enterobacteriaceae. PMID:35180355
Characterization of a Conjugative Multidrug Resistance IncP-2 Megaplasmid, pPAG5, from a Clinical Pseudomonas aeruginosa Isolate. PMID:35171033
Paraphocaeicola brunensis gen. nov., sp. nov., Carrying Two Variants of nimB Resistance Gene from Bacteroides fragilis, and Caecibacteroides pullorum gen. nov., sp. nov., Two Novel Genera Isolated from Chicken Caeca. PMID:35170999
Microbial Characteristics and Genomic Analysis of an ST11 Carbapenem-Resistant Klebsiella pneumoniae Strain Carrying bla KPC-2 Conjugative Drug-Resistant Plasmid. PMID:35155355
The interplay between community and hospital Enterococcus faecium clones within health-care settings: a genomic analysis. PMID:35146465
Close genetic linkage between human and companion animal extraintestinal pathogenic Escherichia coli ST127. PMID:35128493
Isolation, characterization and comparative genomics of potentially probiotic Lactiplantibacillus plantarum strains from Indian foods. PMID:35121802
Long-read metagenomic sequencing reveals shifts in associations of antibiotic resistance genes with mobile genetic elements from sewage to activated sludge. PMID:35093160
Large-scale characterization of the macrolide resistome reveals high diversity and several new pathogen-associated genes. PMID:35084301
High-resolution genomic surveillance elucidates a multilayered hierarchical transfer of resistance between WWTP- and human/animal-associated bacteria. PMID:35078531
F Plasmid Lineages in Escherichia coli ST95: Implications for Host Range, Antibiotic Resistance, and Zoonoses. PMID:35076267
Polypolish: Short-read polishing of long-read bacterial genome assemblies. PMID:35073327
Mobile Genetic Elements Drive Antimicrobial Resistance Gene Spread in Pasteurellaceae Species. PMID:35069478
Emergence and Genomic Characterization of a KPC-2-, NDM-1-, and IMP-4-Producing Klebsiella michiganensis Isolate. PMID:35069468
Comparative Genomics of Typical and Atypical Aeromonas salmonicida Complete Genomes Revealed New Insights into Pathogenesis Evolution. PMID:35056638
Staphylococcus ratti sp. nov. Isolated from a Lab Rat. PMID:35055999
Evaluation of Antibiotic Resistance of Salmonella Serotypes and Whole-Genome Sequencing of Multiresistant Strains Isolated from Food Products in Russia. PMID:35052878
Intracellular Transposition and Capture of Mobile Genetic Elements following Intercellular Conjugation of Multidrug Resistance Conjugative Plasmids from Clinical Enterobacteriaceae Isolates. PMID:35044219
Transcriptomics Reveals How Minocycline-Colistin Synergy Overcomes Antibiotic Resistance in Multidrug-Resistant Klebsiella pneumoniae. PMID:35041511
Fine-Scale Reconstruction of the Evolution of FII-33 Multidrug Resistance Plasmids Enables High-Resolution Genomic Surveillance. PMID:35040701
Comparative Genomics of Bacteroides fragilis Group Isolates Reveals Species-Dependent Resistance Mechanisms and Validates Clinical Tools for Resistance Prediction. PMID:35038926
Comparative genomics of the black rot pathogen Xanthomonas campestris pv. campestris and non-pathogenic co-inhabitant Xanthomonas melonis from Trinidad reveal unique pathogenicity determinants and secretion system profiles. PMID:35036136
Distribution and Evolutionary History of Sialic Acid Catabolism in the Phylum Actinobacteria. PMID:35019771
A Single Nucleotide Change in the polC DNA Polymerase III in Clostridium thermocellum Is Sufficient To Create a Hypermutator Phenotype. PMID:35015978
Adapted Protocol for Saccharibacteria Cocultivation: Two New Members Join the Club of Candidate Phyla Radiation. PMID:35007432
Complete de novo assembly of Wolbachia endosymbiont of Diaphorina citri Kuwayama (Hemiptera: Liviidae) using long-read genome sequencing. PMID:34996906
Genomic Analyses of Pediococcus pentosaceus ST65ACC, a Bacteriocinogenic Strain Isolated from Artisanal Raw-Milk Cheese. PMID:34984631
Genomic characteristics and comparative genomics of Salmonella enterica subsp. enterica serovar Schwarzengrund strain S16 isolated from chicken feces. PMID:34983642
Characterization of a Novel Chromosome-Encoded AmpC β-Lactamase Gene, bla PRC-1, in an Isolate of a Newly Classified Pseudomonas Species, Pseudomonas wenzhouensis A20, From Animal Farm Sewage. PMID:34975778
Comprehensive Genomic Investigation of Tigecycline Resistance Gene tet(X4)-Bearing Strains Expanding among Different Settings. PMID:34937176
Genome-Based Characterization of a Plasmid-Associated Micrococcin P1 Biosynthetic Gene Cluster and Virulence Factors in Mammaliicoccus sciuri IMDO-S72. PMID:34936836
Source Tracking and Global Distribution of the Tigecycline Non-Susceptible tet(X). PMID:34935428
Genomic diversity of antimicrobial resistance in non-typhoidal Salmonella in Victoria, Australia. PMID:34907895
Prevalence and Characteristics of Ceftriaxone-Resistant Salmonella in Children's Hospital in Hangzhou, China. PMID:34880840
Genomic Characterization of Extensively Drug-Resistant NDM-Producing Acinetobacter baumannii Clinical Isolates With the Emergence of Novel bla ADC-257. PMID:34880837
The global population structure and evolutionary history of the acquisition of major virulence factor-encoding genetic elements in Shiga toxin-producing Escherichia coli O121:H19. PMID:34878971
A New Class of Cell Wall-Recycling l,d-Carboxypeptidase Determines β-Lactam Susceptibility and Morphogenesis in Acinetobacter baumannii. PMID:34872350
Cargo Genes of Tn7-Like Transposons Comprise an Enormous Diversity of Defense Systems, Mobile Genetic Elements, and Antibiotic Resistance Genes. PMID:34872347
Genetic and Phenotypic Diversity of Morganella morganii Isolated From Cheese. PMID:34867855
Identification and Characterization of a Novel Chromosomal Aminoglycoside 2'-N-Acetyltransferase, AAC(2')-If, From an Isolate of a Novel Providencia Species, Providencia wenzhouensis R33. PMID:34867838
Alterations in chromosomal genes nfsA, nfsB, and ribE are associated with nitrofurantoin resistance in Escherichia coli from the United Kingdom. PMID:34860151
Easy identification of insertion sequence mobilization events in related bacterial strains with ISCompare. PMID:34849821
Genomic Characterization of a Proteus sp. Strain of Animal Origin Co-Carrying blaNDM-1 and lnu(G). PMID:34827349
Co-conjugation of Virulence Plasmid and KPC Plasmid in a Clinical Klebsiella pneumoniae Strain. PMID:34819921
Colistin resistance in Gram-negative bacteria analysed by five phenotypic assays and inference of the underlying genomic mechanisms. PMID:34798825
Whole Genome Sequencing Analysis of Bacillus thuringiensis GR007 Reveals Multiple Pesticidal Protein Genes. PMID:34795652
Bacterial Adaptation by a Transposition Burst of an Invading IS Element. PMID:34791212
Deciphering Multidrug-Resistant Acinetobacter baumannii from a Pediatric Cancer Hospital in Egypt. PMID:34787450
Genetic evaluation of ESBL-producing Escherichia coli urinary isolates in Otago, New Zealand. PMID:34778763
Molecular Mechanisms of Colistin Resistance in Klebsiella pneumoniae in a Tertiary Care Teaching Hospital. PMID:34765565
Whole-Genomic Analysis of NDM-5-Producing Enterobacteriaceae Recovered from an Urban River in China. PMID:34737583
Within patient genetic diversity of blaKPC harboring Klebsiella pneumoniae in a Colombian hospital and identification of a new NTEKPC platform. PMID:34725422
Emergence of ST63 Pandrug-Resistant Acinetobacter pittii Isolated From an AECOPD Patient in China. PMID:34722334
Drivers of methicillin-resistant Staphylococcus aureus (MRSA) lineage replacement in China. PMID:34711267
RamAp Is an Efflux Pump Regulator Carried by an IncHI2 Plasmid. PMID:34694885
Expanding Characterized Diversity and the Pool of Complete Genome Sequences of Methylococcus Species, the Bacteria of High Environmental and Biotechnological Relevance. PMID:34691008
Identification of Three Novel PmGRI1 Genomic Resistance Islands and One Multidrug Resistant Hybrid Structure of Tn7-like Transposon and PmGRI1 in Proteus mirabilis. PMID:34680847
Effect of Subinhibitory Concentrations of Antibiotics and Disinfectants on ISAba-Mediated Inactivation of Lipooligosaccharide Biosynthesis Genes in Acinetobacter baumannii. PMID:34680840
Co-Occurrence of blaOXA-23 in the Chromosome and Plasmid: Increased Fitness in Carbapenem-Resistant Acinetobacter baumannii. PMID:34680777
Influence of Redox Imbalances on the Transposition of Insertion Sequences in Deinococcus geothermalis. PMID:34679757
Genome Mosaicism in Field Strains of Mycoplasma bovis as Footprints of In-Host Horizontal Chromosomal Transfer. PMID:34669423
Plasmidome of Listeria spp.-The repA-Family Business. PMID:34638661
Transposon-associated TnpB is a programmable RNA-guided DNA endonuclease. PMID:34619744
Complete Genome Sequencing of Leptospira interrogans Isolates from Malaysia Reveals Massive Genome Rearrangement but High Conservation of Virulence-Associated Genes. PMID:34578230
OXA-900, a Novel OXA Sub-Family Carbapenemase Identified in Citrobacter freundii, Evades Detection by Commercial Molecular Diagnostics Tests. PMID:34576793
Whole Genome Sequencing of Methicillin-Resistant Staphylococcus epidermidis Clinical Isolates Reveals Variable Composite SCCmec ACME among Different STs in a Tertiary Care Hospital in Oman. PMID:34576720
Antibiotic-Resistant Genes and Bacteria as Evolving Contaminants of Emerging Concerns (e-CEC): Is It Time to Include Evolution in Risk Assessment? PMID:34572648
Genome Analysis of Acinetobacter lwoffii Strains Isolated from Permafrost Soils Aged from 15 Thousand to 1.8 Million Years Revealed Their Close Relationships with Present-Day Environmental and Clinical Isolates. PMID:34571748
Multidrug-Resistant Lineage of Enterotoxigenic Escherichia coli ST182 With Serotype O169:H41 in Airline Waste. PMID:34557175
Genetic Analysis of mcr-1-Carrying Plasmids From Gram-Negative Bacteria in a Dutch Tertiary Care Hospital: Evidence for Intrapatient and Interspecies Transmission Events. PMID:34552574
A Rickettsiella Endosymbiont Is a Potential Source of Essential B-Vitamins for the Poultry Red Mite, Dermanyssus gallinae. PMID:34539600
Identification and Characterization of a Novel Aminoglycoside 3''-Nucleotidyltransferase, ANT(3'')-IId, From Acinetobacter lwoffii. PMID:34531844
TnCentral: a Prokaryotic Transposable Element Database and Web Portal for Transposon Analysis. PMID:34517763
Characterization of Emerging Pathogens Carrying bla KPC-2 Gene in IncP-6 Plasmids Isolated From Urban Sewage in Argentina. PMID:34504809
Hypervirulent Klebsiella pneumoniae Sequence Type 420 with a Chromosomally Inserted Virulence Plasmid. PMID:34502111
Ten-year longitudinal molecular epidemiology study of Escherichia coli and Klebsiella species bloodstream infections in Oxfordshire, UK. PMID:34479643
Complete Genome Sequence of Pseudomonas aeruginosa CMC-097, Isolated from a Ventilator-Associated Pneumonia Patient, Containing a Novel Carbapenem Resistance Class 1 Integron. PMID:34472982
wMel Wolbachia genome remains stable after 7 years in Australian Aedes aegypti field populations. PMID:34468309
Classifying mobile genetic elements and their interactions from sequence data: The importance of existing biological knowledge. PMID:34453001
Recovery of small plasmid sequences via Oxford Nanopore sequencing. PMID:34431763
Arrangements of Mobile Genetic Elements among Virotype E Subpopulation of Escherichia coli Sequence Type 131 Strains with High Antimicrobial Resistance and Virulence Gene Content. PMID:34431692
Genome Plasticity by Insertion Sequences Learned From a Case of Radiation-Resistant Bacterium Deinococcus geothermalis. PMID:34413635
Diversity in the composition of the accessory genome of Mexican Pseudomonas aeruginosa strains. PMID:34410625
Genetic characterization of livestock-associated methicillin-resistant Staphylococcus aureus isolated in Greece. PMID:34387854
Expression of the ISPpu9 transposase of Pseudomonas putida KT2440 is regulated by two small RNAs and the secondary structure of the mRNA 5'-untranslated region. PMID:34379788
BacAnt: A Combination Annotation Server for Bacterial DNA Sequences to Identify Antibiotic Resistance Genes, Integrons, and Transposable Elements. PMID:34367079
Complete Genome Sequence of Enterobacter asburiae Strain AEB30, Determined Using Illumina and PacBio Sequencing. PMID:34351219
Extended-Spectrum β-Lactamase-Producing and mcr-1-Positive Escherichia coli from the Gut Microbiota of Healthy Singaporeans. PMID:34347523
Emergence of IncHI2 Plasmids With Mobilized Colistin Resistance (mcr)-9 Gene in ESBL-Producing, Multidrug-Resistant Salmonella Typhimurium and Its Monophasic Variant ST34 From Food-Producing Animals in Italy. PMID:34335538
The Tetracycline Resistance Gene, tet(W) in Bifidobacterium animalis subsp. lactis Follows Phylogeny and Differs From tet(W) in Other Species. PMID:34335493
Complete Genome Sequence of Pantoea agglomerans ASB05 Using Illumina and PacBio Sequencing. PMID:34323608
Development of a Biocontained Toluene-Degrading Bacterium for Environmental Protection. PMID:34319138
Prediction of prokaryotic transposases from protein features with machine learning approaches. PMID:34309504
Treat Me Well or Will Resist: Uptake of Mobile Genetic Elements Determine the Resistome of Corynebacterium striatum. PMID:34299116
Evolutionarily recent dual obligatory symbiosis among adelgids indicates a transition between fungus- and insect-associated lifestyles. PMID:34294881
Transmission dynamics of a linear vanA-plasmid during a nosocomial multiclonal outbreak of vancomycin-resistant enterococci in a non-endemic area, Japan. PMID:34285270
Transmission of extended-spectrum cephalosporin-resistant Salmonella harboring a blaCMY-2-carrying IncA/C2 plasmid chromosomally integrated by ISEcp1 or IS26 in layer breeding chains in Japan. PMID:34275958
Genetic Context of optrA and poxtA in Florfenicol-Resistant Enterococci Isolated from Flowing Surface Water in Switzerland. PMID:34252296
Identification of floR Variants Associated With a Novel Tn4371-Like Integrative and Conjugative Element in Clinical Pseudomonas aeruginosa Isolates. PMID:34235095
Antimicrobial resistant bacteria recovered from retail ground meat products in the US include a Raoultella ornithinolytica co-harboring blaKPC-2 and blaNDM-5. PMID:34234222
Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of the nosocomial pathogen Klebsiella pneumoniae. PMID:34228700
Comparative genomic analysis of Escherichia coli isolates from cases of bovine clinical mastitis identifies nine specific pathotype marker genes. PMID:34227932
Genomic Analysis of Delftia tsuruhatensis Strain TR1180 Isolated From A Patient From China With In4-Like Integron-Associated Antimicrobial Resistance. PMID:34222039
Chromosomal Integration of Huge and Complex bla NDM-Carrying Genetic Elements in Enterobacteriaceae. PMID:34211858
The First Data on the Complete Genome of a Tetrodotoxin-Producing Bacterium. PMID:34207879
Emergence of Hybrid Resistance and Virulence Plasmids Harboring New Delhi Metallo-β-Lactamase in Klebsiella pneumoniae in Russia. PMID:34207702
Complete Genome Sequence and Function Gene Identify of Prometryne-Degrading Strain Pseudomonas sp. DY-1. PMID:34200754
Comparative Genomic Insights Into the Taxonomic Classification, Diversity, and Secondary Metabolic Potentials of Kitasatospora, a Genus Closely Related to Streptomyces. PMID:34194415
Genomic Analysis of Enterococcus spp. Isolated From a Wastewater Treatment Plant and Its Associated Waters in Umgungundlovu District, South Africa. PMID:34194401
Comparative insights into genome signatures of ferric iron oxide- and anode-stimulated Desulfuromonas spp. strains. PMID:34171987
Subtypes, resistance and virulence platforms in extended-drug resistant Acinetobacter baumannii Romanian isolates. PMID:34168184
TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation. PMID:34154643
Shared and Unique Evolutionary Trajectories to Ciprofloxacin Resistance in Gram-Negative Bacterial Pathogens. PMID:34154405
Diversity of the Tellurite Resistance Gene Operon in Escherichia coli. PMID:34122392
Genome analysis to decipher syntrophy in the bacterial consortium 'SCP' for azo dye degradation. PMID:34116639
Bradyrhizobium septentrionale sp. nov. (sv. septentrionale) and Bradyrhizobium quebecense sp. nov. (sv. septentrionale) associated with legumes native to Canada possess rearranged symbiosis genes and numerous insertion sequences. PMID:34106824
The Evolution of Interdependence in a Four-Way Mealybug Symbiosis. PMID:34061185
OXA-484, an OXA-48-Type Carbapenem-Hydrolyzing Class D β-Lactamase From Escherichia coli. PMID:34054758
Characterization of gross genome rearrangements in Deinococcus radiodurans recA mutants. PMID:34035321
Staphylococcus epidermidis clones express Staphylococcus aureus-type wall teichoic acid to shift from a commensal to pathogen lifestyle. PMID:34031577
digIS: towards detecting distant and putative novel insertion sequence elements in prokaryotic genomes. PMID:34016050
Emergence and Expansion of a Carbapenem-Resistant Pseudomonas aeruginosa Clone Are Associated with Plasmid-Borne bla KPC-2 and Virulence-Related Genes. PMID:34006625
Occurrence of the p019 Gene in the blaKPC-Harboring Plasmids: Adverse Clinical Impact for Direct Tracking of KPC-Producing Klebsiella pneumoniae by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry. PMID:33980650
Horizontal Gene Transfer of Genes Encoding Copper-Containing Membrane-Bound Monooxygenase (CuMMO) and Soluble Di-iron Monooxygenase (SDIMO) in Ethane- and Propane-Oxidizing Rhodococcus Bacteria. PMID:33962978
Experimental evolution in morbidostat reveals converging genomic trajectories on the path to triclosan resistance. PMID:33945454
Long-read-sequenced reference genomes of the seven major lineages of enterotoxigenic Escherichia coli (ETEC) circulating in modern time. PMID:33927221
Presence of Broad-Spectrum Beta-Lactamase-Producing Enterobacteriaceae in Zoo Mammals. PMID:33919869
A Novel Structure Harboring blaCTX-M-27 on IncF Plasmids in Escherichia coli Isolated from Swine in China. PMID:33916584
Clonal CTX-M-15-Producing Escherichia coli ST-949 Are Present in German Surface Water. PMID:33912141
High-Level Aminoglycoside Resistance in Human Clinical Klebsiella pneumoniae Complex Isolates and Characteristics of armA-Carrying IncHI5 Plasmids. PMID:33897641
Niche and local geography shape the pangenome of wastewater- and livestock-associated Enterobacteriaceae. PMID:33837077
Genetic Suppression of Lethal Mutations in Fatty Acid Biosynthesis Mediated by a Secondary Lipid Synthase. PMID:33837011
Novel Chromosome-Borne Accessory Genetic Elements Carrying Multiple Antibiotic Resistance Genes in Pseudomonas aeruginosa. PMID:33816340
Genomic Background and Phylogeny of cfiA-Positive Bacteroides fragilis Strains Resistant to Meropenem-EDTA. PMID:33809460
Prevalence of blaKPC-2, blaKPC-3 and blaKPC-30-Carrying Plasmids in Klebsiella pneumoniae Isolated in a Brazilian Hospital. PMID:33809215
A Large Spatial Survey of Colistin-Resistant Gene mcr-1-Carrying E. coli in Rivers across Taiwan. PMID:33807253
The Intestinal Carriage of Plasmid-Mediated Colistin-Resistant Enterobacteriaceae in Tertiary Care Settings. PMID:33806455
Transmission of Similar Mcr-1 Carrying Plasmids among Different Escherichia coli Lineages Isolated from Livestock and the Farmer. PMID:33803068
Epidemic HI2 Plasmids Mobilising the Carbapenemase Gene blaIMP-4 in Australian Clinical Samples Identified in Multiple Sublineages of Escherichia coli ST216 Colonising Silver Gulls. PMID:33801844
Molecular Analysis of Polymyxin Resistance among Carbapenemase-Producing Klebsiella pneumoniae in Colombia. PMID:33801833
Expansion and persistence of antibiotic-specific resistance genes following antibiotic treatment. PMID:33779498
ESBL and AmpC β-Lactamase Encoding Genes in E. coli From Pig and Pig Farm Workers in Vietnam and Their Association With Mobile Genetic Elements. PMID:33776959
Whole-genome analysis of probiotic product isolates reveals the presence of genes related to antimicrobial resistance, virulence factors, and toxic metabolites, posing potential health risks. PMID:33761872
Genome-resolved metagenomics using environmental and clinical samples. PMID:33758906
The IS6 family, a clinically important group of insertion sequences including IS26. PMID:33757578
Methylation analysis of Klebsiella pneumoniae from Portuguese hospitals. PMID:33753763
Genomic Insights Into the Pathogenicity of a Novel Biofilm-Forming Enterococcus sp. Bacteria (Enterococcus lacertideformus) Identified in Reptiles. PMID:33737921
Comprehensive Genomic Investigation of Coevolution of mcr genes in Escherichia coli Strains via Nanopore Sequencing. PMID:33728052
The Plasmid-Borne tet(A) Gene Is an Important Factor Causing Tigecycline Resistance in ST11 Carbapenem-Resistant Klebsiella pneumoniae Under Selective Pressure. PMID:33717043
Genetic characterisation of a subset of Campylobacter jejuni isolates from clinical and poultry sources in Ireland. PMID:33690659
The association of group IIB intron with integrons in hypersaline environments. PMID:33648565
Genetic Plurality of OXA/NDM-Encoding Features Characterized From Enterobacterales Recovered From Czech Hospitals. PMID:33633720
An IncP-2 plasmid sublineage associated with dissemination of blaIMP-45 among carbapenem-resistant Pseudomonas aeruginosa. PMID:33620296
Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus. PMID:33602135
Genome-wide genetic marker analysis and genotyping of Escherichia fergusonii strain OTSVEF-60. PMID:33591555
Genomic Characterization of Multidrug-Resistant Escherichia coli BH100 Sub-strains. PMID:33584554
Approaches for characterizing and tracking hospital-associated multidrug-resistant bacteria. PMID:33582841
Endophytic Lifestyle of Global Clones of Extended-Spectrum β-Lactamase-Producing Priority Pathogens in Fresh Vegetables: a Trojan Horse Strategy Favoring Human Colonization? PMID:33563779
Genome-wide dissection reveals diverse pathogenic roles of bacterial Tc toxins. PMID:33540421
A Sarcina bacterium linked to lethal disease in sanctuary chimpanzees in Sierra Leone. PMID:33536429
Conjugative plasmids interact with insertion sequences to shape the horizontal transfer of antimicrobial resistance genes. PMID:33526659
Epidemic Territorial Spread of IncP-2-Type VIM-2 Carbapenemase-Encoding Megaplasmids in Nosocomial Pseudomonas aeruginosa Populations. PMID:33526490
Comparative Genomics of Leuconostoc carnosum. PMID:33505375
Cytotoxic Escherichia coli strains encoding colibactin, cytotoxic necrotizing factor, and cytolethal distending toxin colonize laboratory common marmosets (Callithrix jacchus). PMID:33504843
Complete Genome Sequencing of Acinetobacter baumannii AC1633 and Acinetobacter nosocomialis AC1530 Unveils a Large Multidrug-Resistant Plasmid Encoding the NDM-1 and OXA-58 Carbapenemases. PMID:33504662
Genomic Drivers of Multidrug-Resistant Shigella Affecting Vulnerable Patient Populations in the United States and Abroad. PMID:33500335
Characterization of Extended-Spectrum Beta-Lactamase-Producing Escherichia coli Isolates from Jurong Lake, Singapore with Whole-Genome-Sequencing. PMID:33499011
Peeling the Layers Away: The Genomic Characterization of Bacillus pumilus 64-1, an Isolate With Antimicrobial Activity From the Marine Sponge Plakina cyanorosea (Porifera, Homoscleromorpha). PMID:33488540
Locus of Heat Resistance (LHR) in Meat-Borne Escherichia coli: Screening and Genetic Characterization. PMID:33483306
Genome-Based Analyses of Fitness Effects and Compensatory Changes Associated with Acquisition of bla CMY-, bla CTX-M-, and bla OXA-48/VIM-1-Containing Plasmids in Escherichia coli. PMID:33477799
Dynamics and Microevolution of Vibrio parahaemolyticus Populations in Shellfish Farms. PMID:33436516
Colistin Dependence in Extensively Drug-Resistant Acinetobacter baumannii Strain Is Associated with ISAjo2 and ISAba13 Insertions and Multiple Cellular Responses. PMID:33430070
Mobilome Analysis of Achromobacter spp. Isolates from Chronic and Occasional Lung Infection in Cystic Fibrosis Patients. PMID:33430044
The type VI secretion system of Xanthomonas phaseoli pv. manihotis is involved in virulence and in vitro motility. PMID:33407123
Pooled Plasmid Sequencing Reveals the Relationship Between Mobile Genetic Elements and Antimicrobial Resistance Genes in Clinically Isolated Klebsiella pneumoniae. PMID:33385612
Genomic Insight into Pediococcus acidilactici HN9, a Potential Probiotic Strain Isolated from the Traditional Thai-Style Fermented Beef Nhang. PMID:33375492
Intraspecies plasmid and genomic variation of Mycobacterium kubicae revealed by the complete genome sequences of two clinical isolates. PMID:33355531
Web-Based Genome Analysis of Bacterial Meningitis Pathogens for Public Health Applications Using the Bacterial Meningitis Genomic Analysis Platform (BMGAP). PMID:33324449
Distribution of Important Probiotic Genes and Identification of the Biogenic Amines Produced by Lactobacillus acidophilus PNW3. PMID:33321968
The shared resistome of human and pig microbiota is mobilized by distinct genetic elements. PMID:33310720
Virulence role of the outer membrane protein CarO in carbapenem-resistant Acinetobacter baumannii. PMID:33300460
Characterization of an IncR Plasmid with Two Copies of ISCR-Linked qnrB6 from ST968 Klebsiella pneumoniae. PMID:33299848
Sequence of a Coxiella Endosymbiont of the Tick Amblyomma nuttalli Suggests a Pattern of Convergent Genome Reduction in the Coxiella Genus. PMID:33275132
Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull (Chroicocephalus novaehollandiae) Reveals the Acquisition of Multidrug Resistance Plasmids. PMID:33239365
Active Transposition of Insertion Sequences by Oxidative Stress in Deinococcus geothermalis. PMID:33224109
Genetic Carriers and Genomic Distribution of cadA6-A Novel Variant of a Cadmium Resistance Determinant Identified in Listeria spp. PMID:33218089
Insights into the Metabolism and Evolution of the Genus Acidiphilium, a Typical Acidophile in Acid Mine Drainage. PMID:33203689
Genome Characterization of a Novel Wastewater Bacteroides fragilis Bacteriophage (vB_BfrS_23) and its Host GB124. PMID:33193224
Characterization of IncC Plasmids in Enterobacterales of Food-Producing Animals Originating From China. PMID:33193210
Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles. PMID:33188025
Characterization of the Plasmidome Encoding Carbapenemase and Mechanisms for Dissemination of Carbapenem-Resistant Enterobacteriaceae. PMID:33172969
Epigenomics, genomics, resistome, mobilome, virulome and evolutionary phylogenomics of carbapenem-resistant Klebsiella pneumoniae clinical strains. PMID:33170117
The carbapenem resistance gene blaOXA-23 is disseminated by a conjugative plasmid containing the novel transposon Tn6681 in Acinetobacter johnsonii M19. PMID:33168102
IS26-mediated amplification of blaOXA-1 and blaCTX-M-15 with concurrent outer membrane porin disruption associated with de novo carbapenem resistance in a recurrent bacteraemia cohort. PMID:33164081
MALDI-TOF MS and genomic analysis can make the difference in the clarification of canine brucellosis outbreaks. PMID:33159111
Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea. PMID:33151139
Evolution of Colistin Resistance in the Klebsiella pneumoniae Complex Follows Multiple Evolutionary Trajectories with Variable Effects on Fitness and Virulence Characteristics. PMID:33139278
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes. PMID:33125315
High prevalence of mcr-1-encoded colistin resistance in commensal Escherichia coli from broiler chicken in Bangladesh. PMID:33122817
Diversity of mucoid to non-mucoid switch among carbapenemase-producing Klebsiella pneumoniae. PMID:33109078
Assessing the Genomic Variability of Gardnerella vaginalis through Comparative Genomic Analyses: Evolutionary and Ecological Implications. PMID:33097505
Colonization of a hand washing sink in a veterinary hospital by an Enterobacter hormaechei strain carrying multiple resistances to high importance antimicrobials. PMID:33087168
Genomic Analysis of two NDM-1 Providencia stuartii Strains Recovered from a Single Patient. PMID:33048176
Coexistence of bla OXA-58 and tet(X) on a Novel Plasmid in Acinetobacter sp. From Pig in Shanghai, China. PMID:33042094
Characterization of a New Transposon, Tn6696, on a bla NDM- 1-Carrying Plasmid From Multidrug-Resistant Enterobacter cloacae ssp. dissolvens in China. PMID:33042048
A Nosocomial Respiratory Infection Outbreak of Carbapenem-Resistant Escherichia coli ST131 With Multiple Transmissible bla KPC-2 Carrying Plasmids. PMID:33042037
An Environmental Escherichia coli Strain Is Naturally Competent to Acquire Exogenous DNA. PMID:33013812
Detection of Tn7-Like Transposons and Antibiotic Resistance in Enterobacterales From Animals Used for Food Production With Identification of Three Novel Transposons Tn6813, Tn6814, and Tn6765. PMID:33013752
Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder. PMID:33009809
Structures of ISCth4 transpososomes reveal the role of asymmetry in copy-out/paste-in DNA transposition. PMID:33006208
First hybrid complete genome of Aeromonas veronii reveals chromosome-mediated novel structural variant mcr-3.30 from a human clinical sample. PMID:33005867
CsrA Supports both Environmental Persistence and Host-Associated Growth of Acinetobacter baumannii. PMID:32989034
A recently isolated human commensal Escherichia coli ST10 clone member mediates enhanced thermotolerance and tetrathionate respiration on a P1 phage-derived IncY plasmid. PMID:32985020
The Genome of Staphylococcus epidermidis O47. PMID:32983045
Identification of mcr-8 in Clinical Isolates From Qatar and Evaluation of Their Antimicrobial Profiles. PMID:32983006
Role of diversity-generating retroelements for regulatory pathway tuning in cyanobacteria. PMID:32977771
Insights into the complete genomes of carbapenem-resistant Acinetobacter baumannii harbouring bla OXA-23, bla OXA-420 and bla NDM-1 genes using a hybrid-assembly approach. PMID:32974602
Characterization of a Novel Chromosomal Class C β-Lactamase, YOC-1, and Comparative Genomics Analysis of a Multidrug Resistance Plasmid in Yokenella regensburgei W13. PMID:32973731
GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure. PMID:32972363
Molecular Characterization and Comparative Genomics of IncQ-3 Plasmids Conferring Resistance to Various Antibiotics Isolated from a Wastewater Treatment Plant in Warsaw (Poland). PMID:32957637
Epidemiological and phylogenetic analysis reveals Flavobacteriaceae as potential ancestral source of tigecycline resistance gene tet(X). PMID:32938927
Horizontal Gene Transfer Clarifies Taxonomic Confusion and Promotes the Genetic Diversity and Pathogenicity of Plesiomonas shigelloides. PMID:32934114
Spread of ST348 Klebsiella pneumoniae Producing NDM-1 in a Peruvian Hospital. PMID:32932763
The Impact of Insertion Sequences on O-Serotype Phenotype and Its O-Locus-Based Prediction in Klebsiella pneumoniae O2 and O1. PMID:32911792
Modulating Isoprenoid Biosynthesis Increases Lipooligosaccharides and Restores Acinetobacter baumannii Resistance to Host and Antibiotic Stress. PMID:32905776
Genomic epidemiology of emerging ESBL-producing Salmonella Kentucky bla CTX-M-14b in Europe. PMID:32896234
The Association between Insertion Sequences and Antibiotic Resistance Genes. PMID:32878926
In Vitro Activity of the Ultra-Broad-Spectrum Beta-Lactamase Inhibitor QPX7728 in Combination with Meropenem against Clinical Isolates of Carbapenem-Resistant Acinetobacter baumannii. PMID:32868334
Antimicrobial Susceptibility and Virulence of mcr-1-Positive Enterobacteriaceae in China, a Multicenter Longitudinal Epidemiological Study. PMID:32849334
Novel IncFII plasmid harbouring blaNDM-4 in a carbapenem-resistant Escherichia coli of pig origin, Italy. PMID:32835381
Comparative genomic analysis of a Shiga toxin-producing Escherichia coli (STEC) O145:H25 associated with a severe pediatric case of hemolytic uremic syndrome in Davidson County, Tennessee, US. PMID:32807093
Complete Genomic Analysis of Enterococcus faecium Heat-Resistant Strain Developed by Two-Step Adaptation Laboratory Evolution Method. PMID:32793575
Merging Metagenomics and Spatial Epidemiology To Understand the Distribution of Antimicrobial Resistance Genes from Enterobacteriaceae in Wild Owls. PMID:32769191
Mechanisms of Linezolid Resistance Among Enterococci of Clinical Origin in Spain-Detection of optrA- and cfr(D)-Carrying E. faecalis. PMID:32751552
Evolution of pogo, a separate superfamily of IS630-Tc1-mariner transposons, revealing recurrent domestication events in vertebrates. PMID:32742312
Comparative Genomic Analysis of 19 Clinical Isolates of Tigecycline-Resistant Acinetobacter baumannii. PMID:32733395
Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation. PMID:32732904
Acinetobacter baumannii NCIMB8209: a Rare Environmental Strain Displaying Extensive Insertion Sequence-Mediated Genome Remodeling Resulting in the Loss of Exposed Cell Structures and Defensive Mechanisms. PMID:32727858
Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools. PMID:32727443
Complete Genome Sequence of Pseudomonas aeruginosa CMC-115, a Clinical Strain from an Acute Ventilator-Associated Pneumonia Patient. PMID:32703835
Mobilization of Antibiotic Resistance: Are Current Approaches for Colocalizing Resistomes and Mobilomes Useful? PMID:32695079
Completed Genomic Sequence of Bacillus thuringiensis HER1410 Reveals a Cry-Containing Chromosome, Two Megaplasmids, and an Integrative Plasmidial Prophage. PMID:32690586
Integrated genome-based probiotic relevance and safety evaluation of Lactobacillus reuteri PNW1. PMID:32687505
AbGRI4, a novel antibiotic resistance island in multiply antibiotic-resistant Acinetobacter baumannii clinical isolates. PMID:32681170
Chromosome Architecture and Gene Content of the Emergent Pathogen Acinetobacter haemolyticus. PMID:32670207
First Report on the Plasmidome From a High-Altitude Lake of the Andean Puna. PMID:32655530
Comparative Genomic Analysis Reveals the Metabolism and Evolution of the Thermophilic Archaeal Genus Metallosphaera. PMID:32655516
Comparative Genomics of Acinetobacter baumannii Clinical Strains From Brazil Reveals Polyclonal Dissemination and Selective Exchange of Mobile Genetic Elements Associated With Resistance Genes. PMID:32655514
Impact of insertion sequences on convergent evolution of Shigella species. PMID:32644999
IS982 and kin: new insights into an old IS family. PMID:32641975
Structure and Evolution of Acinetobacter baumannii Plasmids. PMID:32625185
Structural Genomics of repA, repB 1-Carrying IncFIB Family pA1705-qnrS, P911021-tetA, and P1642-tetA, Multidrug-Resistant Plasmids from Klebsiella pneumoniae. PMID:32606838
Genome-Wide Analysis Reveals Genetic Potential for Aromatic Compounds Biodegradation of Sphingopyxis. PMID:32596333
Tracing Back the Evolutionary Route of Enteroinvasive Escherichia coli (EIEC) and Shigella Through the Example of the Highly Pathogenic O96:H19 EIEC Clone. PMID:32582565
Characterization of Extremely Drug-Resistant and Hypervirulent Acinetobacter baumannii AB030. PMID:32560407
Phylogenetic background and habitat drive the genetic diversification of Escherichia coli. PMID:32530914
Whole-genome sequence analysis of environmental Escherichia coli from the faeces of straw-necked ibis (Threskiornis spinicollis) nesting on inland wetlands. PMID:32519939
Duplication and diversification of a unique chromosomal virulence island hosting the subtilase cytotoxin in Escherichia coli ST58. PMID:32519937
Evaluating Eucalyptus leaf colonization by Brasilonema octagenarum (Cyanobacteria, Scytonemataceae) using in planta experiments and genomics. PMID:32518725
A single Proteus mirabilis lineage from human and animal sources: a hidden reservoir of OXA-23 or OXA-58 carbapenemases in Enterobacterales. PMID:32514057
Genetic and Virulence Profiles of Enteroaggregative Escherichia coli (EAEC) Isolated From Deployed Military Personnel (DMP) With Travelers' Diarrhea. PMID:32509590
Draft Genome Sequence of an Extended-Spectrum β-Lactamase-Producing Klebsiella oxytoca Strain Bearing mcr-9 from Qatar. PMID:32499351
Repertoire and Diversity of Toxin - Antitoxin Systems of Crohn's Disease-Associated Adherent-Invasive Escherichia coli. New Insight of T his Emergent E. coli Pathotype. PMID:32477289
Reduced Genome of the Gut Symbiotic Bacterium "Candidatus Benitsuchiphilus tojoi" Provides Insight Into Its Possible Roles in Ecology and Adaptation of the Host Insect. PMID:32435239
Targeting Plasmids to Limit Acquisition and Transmission of Antimicrobial Resistance. PMID:32435238
Abundance of Colistin-Resistant, OXA-23- and ArmA-Producing Acinetobacter baumannii Belonging to International Clone 2 in Greece. PMID:32425900
Insights into the Function and Horizontal Transfer of Isoproturon Degradation Genes (pdmAB) in a Biobed System. PMID:32414799
Whole Genome Sequencing and Comparative Genomic Analyses of Lysinibacillus pakistanensis LZH-9, a Halotolerant Strain with Excellent COD Removal Capability. PMID:32408484
Comparative genomics of whole-cell pertussis vaccine strains from India. PMID:32381023
Transposable elements contribute to the genome plasticity of Ralstonia solanacearum species complex. PMID:32379020
Emergence of fexA in Mediating Resistance to Florfenicols in Campylobacter. PMID:32366706
Characterization of the IS200/IS605 Insertion Sequence Family in Halanaerobium Hydrogeniformans. PMID:32365520
Complete genome sequencing and comparative genomic analyses of Bacillus sp. S3, a novel hyper Sb(III)-oxidizing bacterium. PMID:32354325
Comparative Genomic Analysis Provides Insights into the Phylogeny, Resistome, Virulome, and Host Adaptation in the Genus Ewingella. PMID:32354059
Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes. PMID:32351476
The Biotherapeutic Potential of Lactobacillus reuteri Characterized Using a Target-Specific Selection Process. PMID:32351460
Resistome, Mobilome and Virulome Analysis of Shewanella algae and Vibrio spp. Strains Isolated in Italian Aquaculture Centers. PMID:32326629
Novel Mobilizable Genomic Island GEI-D18A Mediates Conjugational Transfer of Antibiotic Resistance Genes in the Multidrug-Resistant Strain Rheinheimera sp. D18. PMID:32318052
Resident microbial communities inhibit growth and antibiotic-resistance evolution of Escherichia coli in human gut microbiome samples. PMID:32310938
Emergence of vanA-Type Vancomycin-Resistant Enterococcus faecium ST 78 Strain with a rep2-Type Plasmid Carrying a Tn1546-Like Element Isolated from a Urinary Tract Infection in China. PMID:32308438
Adaptive evolution of virulence and persistence in carbapenem-resistant Klebsiella pneumoniae. PMID:32284589
Food Workers as a Reservoir of Extended-Spectrum-Cephalosporin-Resistant Salmonella Strains in Japan. PMID:32276982
Evolution of Predicted Acid Resistance Mechanisms in the Extremely Acidophilic Leptospirillum Genus. PMID:32260256
Crucial Role of the Accessory Genome in the Evolutionary Trajectory of Acinetobacter baumannii Global Clone 1. PMID:32256462
International clones of extended-spectrum β-lactamase (CTX-M)-producing Escherichia coli in peri-urban wild animals, Brazil. PMID:32239649
Toxin-Antitoxin Gene Pairs Found in Tn3 Family Transposons Appear To Be an Integral Part of the Transposition Module. PMID:32234815
Genomic Epidemiology of Vancomycin-Resistant Enterococcus faecium (VREfm) in Latin America: Revisiting The Global VRE Population Structure. PMID:32221315
Complete Genomic Sequences of Three Salmonella enterica subsp. enterica Serovar Muenchen Strains from an Orchard in San Joaquin County, California. PMID:32217672
Novel IncR/IncP6 Hybrid Plasmid pCRE3-KPC Recovered from a Clinical KPC-2-Producing Citrobacter braakii Isolate. PMID:32213624
Acquisition of plasmids conferring carbapenem and aminoglycoside resistance and loss of surface-exposed macromolecule structures as strategies for the adaptation of Acinetobacter baumannii CC104O/CC15P strains to the clinical setting. PMID:32213259
Deciphering the role of insertion sequences in the evolution of bacterial epidemic pathogens with panISa software. PMID:32213253
Isolation of Drug-Resistant Gallibacterium anatis from Calves with Unresponsive Bronchopneumonia, Belgium. PMID:32186507
Genomic and Transcriptomic Evidence Supports Methane Metabolism in Archaeoglobi. PMID:32184369
A megaplasmid family driving dissemination of multidrug resistance in Pseudomonas. PMID:32170080
Genotypic characterization of multiple drug resistant Escherichia coli isolates from a pediatric cancer hospital in Egypt. PMID:32139767
Genomic Stability of Composite SCCmec ACME and COMER-Like Genetic Elements in Staphylococcus epidermidis Correlates With Rate of Excision. PMID:32117176
Whole-Genome Sequencing of Lactobacillus helveticus D75 and D76 Confirms Safety and Probiotic Potential. PMID:32111071
Genomic characterization of the non-O1/non-O139 Vibrio cholerae strain that caused a gastroenteritis outbreak in Santiago, Chile, 2018. PMID:32100707
Genomic Epidemiology of Complex, Multispecies, Plasmid-Borne bla KPC Carbapenemase in Enterobacterales in the United Kingdom from 2009 to 2014. PMID:32094139
Abundance of mobile genetic elements in an Acinetobacter lwoffii strain isolated from Transylvanian honey sample. PMID:32076091
Escherichia coli ST302: Genomic Analysis of Virulence Potential and Antimicrobial Resistance Mediated by Mobile Genetic Elements. PMID:32063891
Genome analysis of a wild rumen bacterium Enterobacter aerogenes LU2 - a novel bio-based succinic acid producer. PMID:32029880
Differential evolution in 3'UTRs leads to specific gene expression in Staphylococcus. PMID:32016395
Complete Genome Sequencing of Four Arcobacter Species Reveals a Diverse Suite of Mobile Elements. PMID:32011709
Colistin-resistance gene mcr in clinical carbapenem-resistant Enterobacteriaceae strains in China, 2014-2019. PMID:31996107
Genomic Analysis of Carbapenemase-Producing Extensively Drug-Resistant Klebsiella pneumoniae Isolates Reveals the Horizontal Spread of p18-43_01 Plasmid Encoding blaNDM-1 in South Africa. PMID:31963608
Genomic dynamics of species and mobile genetic elements in a prolonged blaIMP-4-associated carbapenemase outbreak in an Australian hospital. PMID:31960024
Genomic Analysis of Wolbachia from Laodelphax striatellus (Delphacidae, Hemiptera) Reveals Insights into Its "Jekyll and Hyde" Mode of Infection Pattern. PMID:31958110
Whole-Genome-Sequence-Based Characterization of Extensively Drug-Resistant Acinetobacter baumannii Hospital Outbreak. PMID:31941816
Molecular epidemiology and antimicrobial resistance features of Acinetobacter baumannii clinical isolates from Pakistan. PMID:31941492
Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28. PMID:31935184
Wolbachia Endosymbiont of the Horn Fly (Haematobia irritans irritans): a Supergroup A Strain with Multiple Horizontally Acquired Cytoplasmic Incompatibility Genes. PMID:31900308
Evolutionary Diversity of Prophage DNA in Klebsiella pneumoniae Chromosomes. PMID:31866991
Francisella opportunistica sp. nov., isolated from human blood and cerebrospinal fluid. PMID:31860434
Invasive Nontypeable Haemophilus influenzae Infection Among Adults With HIV in Metropolitan Atlanta, Georgia, 2008-2018. PMID:31860046
OXA-830, a Novel Chromosomally Encoded Extended-Spectrum Class D β-Lactamase in Aeromonas simiae. PMID:31849884
Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools. PMID:31830054
In Vitro Susceptibility and Florfenicol Resistance in Citrobacter Isolates and Whole-Genome Analysis of Multidrug-Resistant Citrobacter freundii. PMID:31828082
Multiple Origins and Specific Evolution of CRISPR/Cas9 Systems in Minimal Bacteria (Mollicutes). PMID:31824468
Research and Technological Advances Regarding the Study of the Spread of Antimicrobial Resistance Genes and Antimicrobial-Resistant Bacteria Related to Animal Husbandry. PMID:31817253
Mobilome and Resistome Reconstruction from Genomes Belonging to Members of the Bifidobacterium Genus. PMID:31810287
Effects of the Antimicrobial Peptide LL-37 and Innate Effector Mechanisms in Colistin-Resistant Klebsiella pneumoniae With mgrB Insertions. PMID:31803163
Type 1, 2, and 1/2-Hybrid IncC Plasmids From China. PMID:31803147
Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754T ) and the laboratory strains R1 and NRC-1. PMID:31797576
Genomic diversity of prevalent Staphylococcus epidermidis multidrug-resistant strains isolated from a Children's Hospital in México City in an eight-years survey. PMID:31768302
First Report of Coexistence of Three Different MDR Plasmids, and That of Occurrence of IMP-Encoding Plasmid in Leclercia adecarboxylata. PMID:31749779
Characterization of antibiotic resistance genes in the species of the rumen microbiota. PMID:31748524
Conserved Patterns of Symmetric Inversion in the Genome Evolution of Bordetella Respiratory Pathogens. PMID:31744907
Characterization of the diverse plasmid pool harbored by the blaNDM-1-containing Acinetobacter bereziniae HPC229 clinical strain. PMID:31743332
Characteristics of a Colistin-Resistant Escherichia coli ST695 Harboring the Chromosomally-Encoded mcr-1 Gene. PMID:31726755
Cultivation-Assisted Genome of Candidatus Fukatsuia symbiotica; the Enigmatic "X-Type" Symbiont of Aphids. PMID:31725149
Exfoliative toxin E, a new Staphylococcus aureus virulence factor with host-specific activity. PMID:31704997
Hypervirulent clade 2, ribotype 019/sequence type 67 Clostridioides difficile strain from Japan. PMID:31700548
Complete hybrid genome assembly of clinical multidrug-resistant Bacteroides fragilis isolates enables comprehensive identification of antimicrobial-resistance genes and plasmids. PMID:31697231
Genetic Features of mcr-1 Mediated Colistin Resistance in CMY-2-Producing Escherichia coli From Romanian Poultry. PMID:31681191
Gene Composition as a Potential Barrier to Large Recombinations in the Bacterial Pathogen Klebsiella pneumoniae. PMID:31665331
Maintenance of Sympatric and Allopatric Populations in Free-Living Terrestrial Bacteria. PMID:31662456
Diversity and Horizontal Transfer of Antarctic Pseudomonas spp. Plasmids. PMID:31661808
Comprehensive Analysis Reveals the Evolution and Pathogenicity of Aeromonas, Viewed from Both Single Isolated Species and Microbial Communities. PMID:31641046
Characterization of an Environmental Multidrug-Resistant Acinetobacter seifertii and Comparative Genomic Analysis Reveals Co-occurrence of Antimicrobial Resistance and Metal Tolerance Determinants. PMID:31620107
Transposition of Insertion Sequences was Triggered by Oxidative Stress in Radiation-Resistant Bacterium Deinococcus geothermalis. PMID:31614796
Genomic Insights Into Five Strains of Lactobacillus plantarum With Biotechnological Potential Isolated From chicha, a Traditional Maize-Based Fermented Beverage From Northwestern Argentina. PMID:31611862
A hybrid sub-lineage of Listeria monocytogenes comprising hypervirulent isolates. PMID:31570766
Tal1NXtc01 in Xanthomonas translucens pv. cerealis Contributes to Virulence in Bacterial Leaf Streak of Wheat. PMID:31551976
Characterization of a NDM-1- Encoding Plasmid pHFK418-NDM From a Clinical Proteus mirabilis Isolate Harboring Two Novel Transposons, Tn6624 and Tn6625. PMID:31551967
Genomic Analysis of γ-Hexachlorocyclohexane-Degrading Sphingopyxis lindanitolerans WS5A3p Strain in the Context of the Pangenome of Sphingopyxis. PMID:31500174
An analysis of the IS6/IS26 family of insertion sequences: is it a single family? PMID:31486766
Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center. PMID:31477167
Z/I1 Hybrid Virulence Plasmids Carrying Antimicrobial Resistance genes in S. Typhimurium from Australian Food Animal Production. PMID:31470501
Genome Sequence of a Novel Enterococcus faecalis Sequence Type 922 Strain Isolated from a Door Handle in the Intensive Care Unit of a District Hospital in Durban, South Africa. PMID:31467094
Population dynamics of an Escherichia coli ST131 lineage during recurrent urinary tract infection. PMID:31409795
Complete genome sequence analysis of the thermoacidophilic verrucomicrobial methanotroph "Candidatus Methylacidiphilum kamchatkense" strain Kam1 and comparison with its closest relatives. PMID:31399023
Molecular Epidemiology of Multidrug-Resistant Klebsiella pneumoniae Isolates in a Brazilian Tertiary Hospital. PMID:31396186
Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain. PMID:31381486
Comparative Genomics and Phenotypic Investigations Into Antibiotic, Heavy Metal, and Disinfectant Susceptibilities of Salmonella enterica Strains Isolated in Australia. PMID:31379776
Frankia-Enriched Metagenomes from the Earliest Diverging Symbiotic Frankia Cluster: They Come in Teams. PMID:31368478
Whole-Genome Sequencing Reveals a Prolonged and Persistent Intrahospital Transmission of Corynebacterium striatum, an Emerging Multidrug-Resistant Pathogen. PMID:31315959
Molecular characteristics of oxazolidinone resistance in enterococci from a multicenter study in China. PMID:31299904
Expanding the Diversity of Myoviridae Phages Infecting Lactobacillus plantarum-A Novel Lineage of Lactobacillus Phages Comprising Five New Members. PMID:31277436
Genetic and Phenotypic Features of a Novel Acinetobacter Species, Strain A47, Isolated From the Clinical Setting. PMID:31275288
SMRT sequencing reveals differential patterns of methylation in two O111:H- STEC isolates from a hemolytic uremic syndrome outbreak in Australia. PMID:31263188
Characterization of a NDM-7 carbapenemase-producing Escherichia coli ST410 clinical strain isolated from a urinary tract infection in China. PMID:31239731
Enterococcus faecium genome dynamics during long-term asymptomatic patient gut colonization. PMID:31166888
Phylogeny, Divergent Evolution, and Speciation of Sulfur-Oxidizing Acidithiobacillus Populations. PMID:31146680
Exploration of antibiotic resistance risks in a veterinary teaching hospital with Oxford Nanopore long read sequencing. PMID:31145757
The Arginine Deiminase Operon Is Responsible for a Fitness Trade-Off in Extended-Spectrum-β-Lactamase-Producing Strains of Escherichia coli. PMID:31138573
Diverse Commensal Escherichia coli Clones and Plasmids Disseminate Antimicrobial Resistance Genes in Domestic Animals and Children in a Semirural Community in Ecuador. PMID:31118304
Diversity of the Rap-Phr quorum-sensing systems in the Bacillus cereus group. PMID:31104082
Chromosomally Encoded hok-sok Toxin-Antitoxin System in the Fire Blight Pathogen Erwinia amylovora: Identification and Functional Characterization. PMID:31101613
Functional Characterization of a Miniature Inverted Transposable Element at the Origin of mcr-5 Gene Acquisition in Escherichia coli. PMID:31085513
Deianiraea, an extracellular bacterium associated with the ciliate Paramecium, suggests an alternative scenario for the evolution of Rickettsiales. PMID:31073215
Evolutionary Relatedness and Classification of Tumor-Inducing and Opine-Catabolic Plasmids in Three Rhizobium rhizogenes Strains Isolated from the Same Crown Gall Tumor. PMID:31028704
Benefits and Drawbacks of Harboring Plasmid pP32BP2, Identified in Arctic Psychrophilic Bacterium Psychrobacter sp. DAB_AL32B. PMID:31022896
Genome Sequence of Bordetella pertussis Vaccine Strain BP 165. PMID:31000545
Genome analysis of Paenibacillus polymyxa A18 gives insights into the features associated with its adaptation to the termite gut environment. PMID:30988376
Development of a supF-based mutation-detection system in the extreme thermophile Thermus thermophilus HB27. PMID:30968247
Genomic analysis of multidrug-resistant clinical Enterococcus faecalis isolates for antimicrobial resistance genes and virulence factors from the western region of Saudi Arabia. PMID:30962917
Molecular Mechanism of N,N-Dimethylformamide Degradation in Methylobacterium sp. Strain DM1. PMID:30952664
Insertion sequences drive the emergence of a highly adapted human pathogen. PMID:30946644
Loss and Gain in the Evolution of the Salmonella enterica Serovar Gallinarum Biovar Pullorum Genome. PMID:30944215
Rapid phenotypic evolution in multidrug-resistant Klebsiella pneumoniae hospital outbreak strains. PMID:30939107
Cumulative acquisition of pathogenicity islands has shaped virulence potential and contributed to the emergence of LEE-negative Shiga toxin-producing Escherichia coli strains. PMID:30924410
Discovery of Novel Antibiotic Resistance Determinants in Forest and Grassland Soil Metagenomes. PMID:30899254
Refining the Pneumococcal Competence Regulon by RNA Sequencing. PMID:30885934
Transposition of IS4 Family Insertion Sequences ISTeha3, ISTeha4, and ISTeha5 into the arc Operon Disrupts Arginine Deiminase System in Tetragenococcus halophilus. PMID:30877114
Potential of the Burkholderia cepacia Complex to Produce 4-Hydroxy-3-Methyl-2-Alkyquinolines. PMID:30873388
Emergence of New Delhi Metallo-β-Lactamase (NDM-5) in Klebsiella quasipneumoniae from Neonates in a Nigerian Hospital. PMID:30867330
Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia. PMID:30866820
Genomic Insights of Halophilic Planococcus maritimus SAMP MCC 3013 and Detail Investigation of Its Biosurfactant Production. PMID:30863371
Genetic Characterization of a bla VIM-24-Carrying IncP-7β Plasmid p1160-VIM and a bla VIM-4-Harboring Integrative and Conjugative Element Tn6413 From Clinical Pseudomonas aeruginosa. PMID:30863370
Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania. PMID:30843063
Comparative Genome Analysis of an Extensively Drug-Resistant Isolate of Avian Sequence Type 167 Escherichia coli Strain Sanji with Novel In Silico Serotype O89b:H9. PMID:30834329
High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaechei. PMID:30805030
Whole-Genome Sequences of Five Acinetobacter baumannii Strains From a Child With Leukemia M2. PMID:30787915
MITE Aba12 , a Novel Mobile Miniature Inverted-Repeat Transposable Element Identified in Acinetobacter baumannii ATCC 17978 and Its Prevalence across the Moraxellaceae Family. PMID:30787115
Comparative analysis of KPC-2-encoding chimera plasmids with multi-replicon IncR:IncpA1763-KPC:IncN1 or IncFIIpHN7A8:IncpA1763-KPC:IncN1. PMID:30774396
Replicon-Based Typing of IncI-Complex Plasmids, and Comparative Genomics Analysis of IncIγ/K1 Plasmids. PMID:30761100
CMY-1/MOX-family AmpC β-lactamases MOX-1, MOX-2 and MOX-9 were mobilized independently from three Aeromonas species. PMID:30753583
Conjugal Transfer, Whole-Genome Sequencing, and Plasmid Analysis of Four mcr-1-Bearing Isolates from U.S. Patients. PMID:30745393
Complete Genome Sequence of the Wolbachia wAlbB Endosymbiont of Aedes albopictus. PMID:30715337
Sequencing and Genomic Diversity Analysis of IncHI5 Plasmids. PMID:30692976
Whole genome sequence analysis of Australian avian pathogenic Escherichia coli that carry the class 1 integrase gene. PMID:30672731
The β-Lactamase Gene Profile and a Plasmid-Carrying Multiple Heavy Metal Resistance Genes of Enterobacter cloacae. PMID:30671441
Into the Thermus Mobilome: Presence, Diversity and Recent Activities of Insertion Sequences Across Thermus spp. PMID:30669685
Genomic and Transcriptomic Changes that Mediate Increased Platinum Resistance in Cupriavidus metallidurans. PMID:30669395
Antibiotic collateral sensitivity is contingent on the repeatability of evolution. PMID:30659188
Development of a high sensitivity TaqMan-based PCR assay for the specific detection of Mycobacterium tuberculosis complex in both pulmonary and extrapulmonary specimens. PMID:30643154
High-Quality Draft Genome Sequence of Pseudomonas aeruginosa 268 Isolated from a Patient with a Left Ventricular Assist Device. PMID:30637391
Genomic characterisation of the new Dickeya fangzhongdai species regrouping plant pathogens and environmental isolates. PMID:30634913
Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut. PMID:30630933
Insight Into the Diversity and Possible Role of Plasmids in the Adaptation of Psychrotolerant and Metalotolerant Arthrobacter spp. to Extreme Antarctic Environments. PMID:30619210
Interspecies DNA acquisition by a naturally competent Acinetobacter baumannii strain. PMID:30611868
Carbapenemases on the move: it's good to be on ICEs. PMID:30574213
Whole-Genome Sequencing for Characterization of Capsule Locus and Prediction of Serogroup of Invasive Meningococcal Isolates. PMID:30567750
Transcriptional Landscape of a bla KPC-2 Plasmid and Response to Imipenem Exposure in Escherichia coli TOP10. PMID:30559731
Draft Genome Sequence of Enterococcus faecium CL-6729, a Clinical Isolate Showing Constitutive Vancomycin Resistance. PMID:30533817
Complete Genome Sequence of Lactococcus lactis subsp. lactis Strain 14B4, Which Inhibits the Growth of Salmonella enterica Serotype Poona In Vitro. PMID:30533785
Diverse Vectors and Mechanisms Spread New Delhi Metallo-β-Lactamases among Carbapenem-Resistant Enterobacteriaceae in the Greater Boston Area. PMID:30530605
Spreading Patterns of NDM-Producing Enterobacteriaceae in Clinical and Environmental Settings in Yangon, Myanmar. PMID:30530602
Comparative genomics for non-O1/O139 Vibrio cholerae isolates recovered from the Yangtze River Estuary versus V. cholerae representative isolates from serogroup O1. PMID:30488322
The resistomes of six carbapenem-resistant pathogens - a critical genotype-phenotype analysis. PMID:30461373
Virulent Epidemic Pneumonia in Sheep Caused by the Human Pathogen Acinetobacter baumannii. PMID:30459734
Genomic Characterization of Extended-Spectrum Cephalosporin-Resistant Salmonella enterica in the Colombian Poultry Chain. PMID:30459720
Impacts of horizontal gene transfer on the compact genome of the clavulanic acid-producing Streptomyces strain F613-1. PMID:30456006
Genome sequence analysis of an extensively drug-resistant Acinetobacter baumannii indigo-pigmented strain depicts evidence of increase genome plasticity. PMID:30446709
Assessing Transmission of Antimicrobial-Resistant Escherichia coli in Wild Giraffe Contact Networks. PMID:30413480
Potentially Mobile Denitrification Genes Identified in Azospirillum sp. Strain TSH58. PMID:30413471
Firmicutes-enriched IS1447 represents a group of IS3-family insertion sequences exhibiting unique + 1 transcriptional slippage. PMID:30410575
Genome Structure of the Opportunistic Pathogen Paracoccus yeei (Alphaproteobacteria) and Identification of Putative Virulence Factors. PMID:30410477
Intensive targeting of regulatory competence genes by transposable elements in streptococci. PMID:30406402
Comparative Genomic Analysis Reveals the Distribution, Organization, and Evolution of Metal Resistance Genes in the Genus Acidithiobacillus. PMID:30389769
Comparative genomic and methylome analysis of non-virulent D74 and virulent Nagasaki Haemophilus parasuis isolates. PMID:30383795
Draft genome sequence data of a tigecycline-resistant Enterobacter cloacae ST93 clinical strain isolated from bloodstream infection. PMID:30364805
Comparative Genomics of the First and Complete Genome of "Actinobacillus porcitonsillarum" Supports the Novel Species Hypothesis. PMID:30363939
Comparative analysis of bla KPC-2- and rmtB-carrying IncFII-family pKPC-LK30/pHN7A8 hybrid plasmids from Klebsiella pneumoniae CG258 strains disseminated among multiple Chinese hospitals. PMID:30349335
Whole-genome analysis and description of an outbreak due to carbapenem-resistant Ochrobactrum anthropi causing pseudo-bacteraemias. PMID:30345061
Cupriavidus metallidurans Strains with Different Mobilomes and from Distinct Environments Have Comparable Phenomes. PMID:30340417
Excision-reintegration at a pneumococcal phase-variable restriction-modification locus drives within- and between-strain epigenetic differentiation and inhibits gene acquisition. PMID:30321375
Comparative Genomics of Degradative Novosphingobium Strains With Special Reference to Microcystin-Degrading Novosphingobium sp. THN1. PMID:30319567
An Introduced Crop Plant Is Driving Diversification of the Virulent Bacterial Pathogen Erwinia tracheiphila. PMID:30279283
Acquisition of resistance to carbapenem and macrolide-mediated quorum sensing inhibition by Pseudomonas aeruginosa via ICETn4371 6385. PMID:30271939
Characterization of a Multiresistance Plasmid Carrying the optrA and cfr Resistance Genes From an Enterococcus faecium Clinical Isolate. PMID:30271398
Single Nucleotide Polymorphism Analysis Indicates Genetic Distinction and Reduced Diversity of Swine-Associated Methicillin Resistant Staphylococcus aureus (MRSA) ST5 Isolates Compared to Clinical MRSA ST5 Isolates. PMID:30271385
Comparative genomics of five different resistance plasmids coexisting in a clinical multi-drug resistant Citrobacter freundii isolate. PMID:30254476
Spread of Carbapenem Resistance by Transposition and Conjugation Among Pseudomonas aeruginosa. PMID:30233535
Role of plasmid plasticity and mobile genetic elements in the entomopathogen Bacillus thuringiensis serovar israelensis. PMID:30203090
A New Species of the γ-Proteobacterium Francisella, F. adeliensis Sp. Nov., Endocytobiont in an Antarctic Marine Ciliate and Potential Evolutionary Forerunner of Pathogenic Species. PMID:30187088
Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains. PMID:30180794
Insertion element mediated mgrB disruption and presence of ISKpn28 in colistin-resistant Klebsiella pneumoniae isolates from Saudi Arabia. PMID:30147346
Characterization and induction of prophages in human gut-associated Bifidobacterium hosts. PMID:30143740
Copy number variation is associated with gene expression change in archaea. PMID:30142055
Dissemination of blaOXA-370 is mediated by IncX plasmids and the Tn6435 transposon. PMID:30128668
Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39. PMID:30107613
Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany. PMID:30092762
Genomics helps to decipher the resistance mechanisms present in a Pseudomonas chlororaphis strain recovered in an HIV patient. PMID:30090632
Extended-spectrum β-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins. PMID:30080134
Mobile Genetic Elements Associated with Antimicrobial Resistance. PMID:30068738
MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies. PMID:30052170
Genomic Characterization of MDR Escherichia coli Harboring blaOXA-48 on the IncL/M-type Plasmid Isolated from Blood Stream Infection. PMID:30050923
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia. PMID:30033331
SssP1, a Streptococcus suis Fimbria-Like Protein Transported by the SecY2/A2 System, Contributes to Bacterial Virulence. PMID:30030221
Patterns of Nucleotide Deletion and Insertion Inferred from Bacterial Pseudogenes. PMID:29982456
Emergence and spread of carbapenem-resistant Acinetobacter baumannii international clones II and III in Lima, Peru. PMID:29970918
Heterogeneous and Flexible Transmission of mcr-1 in Hospital-Associated Escherichia coli. PMID:29970465
Molecular Epidemiology of mcr-Encoded Colistin Resistance in Enterobacteriaceae From Food-Producing Animals in Italy Revealed Through the EU Harmonized Antimicrobial Resistance Monitoring. PMID:29951045
Description and Comparative Genomics of Macrococcus caseolyticus subsp. hominis subsp. nov., Macrococcus goetzii sp. nov., Macrococcus epidermidis sp. nov., and Macrococcus bohemicus sp. nov., Novel Macrococci From Human Clinical Material With Virulence Potential and Suspected Uptake of Foreign DNA by Natural Transformation. PMID:29951040
Ongoing Transposon-Mediated Genome Reduction in the Luminous Bacterial Symbionts of Deep-Sea Ceratioid Anglerfishes. PMID:29946051
In Silico Genome-Wide Analysis Reveals the Potential Links Between Core Genome of Acidithiobacillus thiooxidans and Its Autotrophic Lifestyle. PMID:29937764
Complete Genome Sequences of Three Bacillus amyloliquefaciens Strains That Inhibit the Growth of Listeria monocytogenes In Vitro. PMID:29930072
Single-strand DNA processing: phylogenomics and sequence diversity of a superfamily of potential prokaryotic HuH endonucleases. PMID:29914351
Genomic Insight into Symbiosis-Induced Insect Color Change by a Facultative Bacterial Endosymbiont, "Candidatus Rickettsiella viridis". PMID:29895637
Resistome of carbapenem- and colistin-resistant Klebsiella pneumoniae clinical isolates. PMID:29883490
Characterization of a novel multidrug resistance plasmid pSGB23 isolated from Salmonella enterica subspecies enterica serovar Saintpaul. PMID:29881467
The Genomic Basis of Intrinsic and Acquired Antibiotic Resistance in the Genus Serratia. PMID:29867787
Distinctive characters of Nostoc genomes in cyanolichens. PMID:29866043
Genome analyses of blaNDM-4 carrying ST 315 Escherichia coli isolate from sewage water of one of the Indian hospitals. PMID:29849769
Comparative genomic analysis of Myroides odoratimimus isolates. PMID:29797432
Genomic and functional characterisation of IncX3 plasmids encoding blaSHV-12 in Escherichia coli from human and animal origin. PMID:29769695
Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014. PMID:29744043
Ca. Endozoicomonas cretensis: A Novel Fish Pathogen Characterized by Genome Plasticity. PMID:29726925
Emergence of High-Level Colistin Resistance in an Acinetobacter baumannii Clinical Isolate Mediated by Inactivation of the Global Regulator H-NS. PMID:29712662
Whole-Genome Analysis of an Extensively Drug-Resistance Empedobacter falsenii Strain Reveals Distinct Features and the Presence of a Novel Metallo-ß-Lactamase (EBR-2). PMID:29687150
Genomic Structural Variations Affecting Virulence During Clonal Expansion of Pseudomonas syringae pv. actinidiae Biovar 3 in Europe. PMID:29675009
Pan-Genome Analysis Links the Hereditary Variation of Leptospirillum ferriphilum With Its Evolutionary Adaptation. PMID:29636744
Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing. PMID:29635365
Genetic Environment of cry1 Genes Indicates Their Common Origin. PMID:29617829
Dissemination of KPC-2-Encoding IncX6 Plasmids Among Multiple Enterobacteriaceae Species in a Single Chinese Hospital. PMID:29616001
Genomic Analysis of a Pan-Resistant Isolate of Klebsiella pneumoniae, United States 2016. PMID:29615503
Technological and Genomic Analysis of Roles of the Cell-Envelope Protease PrtS in Yoghurt Starter Development. PMID:29614042
Molecular basis for the structural diversity in serogroup O2-antigen polysaccharides in Klebsiella pneumoniae. PMID:29602878
Genomic and physiological analyses of an indigenous strain, Enterococcus faecium 17OM39. PMID:29556852
Phenotypic and Genotypic Characterization of Enterobacteriaceae Producing Oxacillinase-48-Like Carbapenemases, United States. PMID:29553324
Genotyping of Mycobacterium tuberculosis using whole genome sequencing. PMID:29550921
Whole Genome Sequence Analysis of CTX-M-15 Producing Klebsiella Isolates Allowed Dissecting a Polyclonal Outbreak Scenario. PMID:29527200
Spread of Plasmid-Encoded NDM-1 and GES-5 Carbapenemases among Extensively Drug-Resistant and Pandrug-Resistant Clinical Enterobacteriaceae in Durban, South Africa. PMID:29507063
Characteristics of Carbapenemase-Producing Enterobacteriaceae in Wastewater Revealed by Genomic Analysis. PMID:29483120
Site-Specific Recombination at XerC/D Sites Mediates the Formation and Resolution of Plasmid Co-integrates Carrying a blaOXA-58- and TnaphA6-Resistance Module in Acinetobacter baumannii. PMID:29434581
Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome. PMID:29434576
Multifactorial chromosomal variants regulate polymyxin resistance in extensively drug-resistant Klebsiella pneumoniae. PMID:29431605
Genome analysis of clinical multilocus sequence Type 11 Klebsiella pneumoniae from China. PMID:29424684
Genome analysis of Mycoplasma synoviae strain MS-H, the most common M. synoviae strain with a worldwide distribution. PMID:29394882
Multiple Acquisitions of Pathogen-Derived Francisella Endosymbionts in Soft Ticks. PMID:29385445
Salt Stress-Induced Loss of Iron Oxidoreduction Activities and Reacquisition of That Phenotype Depend on rus Operon Transcription in Acidithiobacillus ferridurans. PMID:29374029
Characterization of a functional insertion sequence ISSau2 from Staphylococcus aureus. PMID:29371891
Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains. PMID:29338683
Efficient generation of complete sequences of MDR-encoding plasmids by rapid assembly of MinION barcoding sequencing data. PMID:29325009
Antibiotic Resistance Plasmids Cointegrated into a Megaplasmid Harboring the blaOXA-427 Carbapenemase Gene. PMID:29311088
Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26. PMID:29306352
The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains. PMID:29304740
Wild eel microbiome reveals that skin mucus of fish could be a natural niche for aquatic mucosal pathogen evolution. PMID:29268781
Study of mcr-1 Gene-Mediated Colistin Resistance in Enterobacteriaceae Isolated from Humans and Animals in Different Countries. PMID:29257080
Illumina short-read and MinION long-read WGS to characterize the molecular epidemiology of an NDM-1 Serratia marcescens outbreak in Romania. PMID:29237003
Genetic Plasticity and Ethylmalonyl Coenzyme A Pathway during Acetate Assimilation in Rhodospirillum rubrum S1H under Photoheterotrophic Conditions. PMID:29180364
Complete Genomic Sequences of Two Salmonella enterica subsp. enterica Serogroup C2 (O:6,8) Strains from Central California. PMID:29146854
Prevailing clone (ST69) of Vibrio cholerae O139 in India over 10 years. PMID:29142593
CXC Chemokines Exhibit Bactericidal Activity against Multidrug-Resistant Gram-Negative Pathogens. PMID:29138303
Silent but deadly: IS200 promotes pathogenicity in Salmonella Typhimurium. PMID:29120256
Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes. PMID:29114402
Staphylococcus edaphicus sp. nov., Isolated in Antarctica, Harbors the mecC Gene and Genomic Islands with a Suspected Role in Adaptation to Extreme Environments. PMID:29079617
Complete Genome Sequence of Kluyvera intestini sp. nov., Isolated from the Stomach of a Patient with Gastric Cancer. PMID:29074664
Characterization of Four Multidrug Resistance Plasmids Captured from the Sediments of an Urban Coastal Wetland. PMID:29067005
The chromosomal organization of horizontal gene transfer in bacteria. PMID:29018197
Rapid Gene Turnover as a Significant Source of Genetic Variation in a Recently Seeded Population of a Healthcare-Associated Pathogen. PMID:28979253
pSY153-MDR, a p12969-DIM-related mega plasmid carrying blaIMP-45 and armA, from clinical Pseudomonas putida. PMID:28978128
Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH. PMID:28961970
Glimpse into the genome sequence of a multidrug-resistant Acinetobacter pittii ST950 clinical isolate carrying the blaOXA-72 and blaOXA-533 genes in China. PMID:28954001
Safety Assessment of Lactobacillus helveticus KLDS1.8701 Based on Whole Genome Sequencing and Oral Toxicity Studies. PMID:28946645
The Environmental Acinetobacter baumannii Isolate DSM30011 Reveals Clues into the Preantibiotic Era Genome Diversity, Virulence Potential, and Niche Range of a Predominant Nosocomial Pathogen. PMID:28934377
Genome Organization of Sphingobium indicum B90A: An Archetypal Hexachlorocyclohexane (HCH) Degrading Genotype. PMID:28922869
Tremblaya phenacola PPER: an evolutionary beta-gammaproteobacterium collage. PMID:28914880
Genomic Characterization of Urethritis-Associated Neisseria meningitidis Shows that a Wide Range of N. meningitidis Strains Can Cause Urethritis. PMID:28904187
Coexistence of two novel resistance plasmids, blaKPC-2-carrying p14057A and tetA(A) -carrying p14057B, in Pseudomonas aeruginosa. PMID:28891735
Identification and genomic comparison of temperate bacteriophages derived from emetic Bacillus cereus. PMID:28886124
Genomic Characteristics of Bifidobacterium thermacidophilum Pig Isolates and Wild Boar Isolates Reveal the Unique Presence of a Putative Mobile Genetic Element with tetW for Pig Farm Isolates. PMID:28861055
Genetic characterization of novel class 1 Integrons In0, In1069 and In1287 to In1290, and the inference of In1069-associated integron evolution in Enterobacteriaceae. PMID:28852475
Genome sequencing and comparative genomics of enterohemorrhagic Escherichia coli O145:H25 and O145:H28 reveal distinct evolutionary paths and marked variations in traits associated with virulence & colonization. PMID:28830351
Comparative Transcriptomics of Bacillus mycoides Strains in Response to Potato-Root Exudates Reveals Different Genetic Adaptation of Endophytic and Soil Isolates. PMID:28824604
Co-occurrence of 3 different resistance plasmids in a multi-drug resistant Cronobacter sakazakii isolate causing neonatal infections. PMID:28771073
Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin-producing Escherichia coli strains. PMID:28765569
High abundance and expression of transposases in bacteria from the Baltic Sea. PMID:28731472
Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli. PMID:28725045
Genomic characterization of novel IncFII-type multidrug resistant plasmids p0716-KPC and p12181-KPC from Klebsiella pneumoniae. PMID:28725038
Comparative genomic analysis of Paenibacillus sp. SSG-1 and its closely related strains reveals the effect of glycometabolism on environmental adaptation. PMID:28720902
Plasmid composition in Aeromonas salmonicida subsp. salmonicida 01-B526 unravels unsuspected type three secretion system loss patterns. PMID:28701230
Expanding landscapes of the diversified mcr-1-bearing plasmid reservoirs. PMID:28683827
Analysis of the Genome and Mobilome of a Dissimilatory Arsenate Reducing Aeromonas sp. O23A Reveals Multiple Mechanisms for Heavy Metal Resistance and Metabolism. PMID:28611742
Genome Mining and Predictive Functional Profiling of Acidophilic Rhizobacterium Pseudomonas fluorescens Pt14. PMID:28611492
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads. PMID:28594827
The tet39 Determinant and the msrE-mphE Genes in Acinetobacter Plasmids Are Each Part of Discrete Modules Flanked by Inversely Oriented pdif (XerC-XerD) Sites. PMID:28533235
Comparative Genomics Unravels the Functional Roles of Co-occurring Acidophilic Bacteria in Bioleaching Heaps. PMID:28529505
Colistin Resistance in Carbapenem-Resistant Klebsiella pneumoniae Mediated by Chromosomal Integration of Plasmid DNA. PMID:28507118
Chromosomal features of Escherichia coli serotype O2:K2, an avian pathogenic E. coli. PMID:28496941
Genome Stability in Engineered Strains of the Extremely Thermophilic Lignocellulose-Degrading Bacterium Caldicellulosiruptor bescii. PMID:28476773
NDM-5 and OXA-181 Beta-Lactamases, a Significant Threat Continues To Spread in the Americas. PMID:28461314
Genome Sequencing Analysis of Atypical Shigella flexneri Isolated in Korea. PMID:28443228
Disruption of tetR type regulator adeN by mobile genetic element confers elevated virulence in Acinetobacter baumannii. PMID:28436748
Genetic interrelations in the actinomycin biosynthetic gene clusters of Streptomyces antibioticus IMRU 3720 and Streptomyces chrysomallus ATCC11523, producers of actinomycin X and actinomycin C. PMID:28435299
The evolutionary life cycle of the polysaccharide biosynthetic gene cluster based on the Sphingomonadaceae. PMID:28429731
Evidence of horizontal gene transfer by transposase gene analyses in Fervidobacterium species. PMID:28426805
Sequencing of blaIMP-Carrying IncN2 Plasmids, and Comparative Genomics of IncN2 Plasmids Harboring Class 1 Integrons. PMID:28424761
Genomic Analysis of Factors Associated with Low Prevalence of Antibiotic Resistance in Extraintestinal Pathogenic Escherichia coli Sequence Type 95 Strains. PMID:28405633
Regulation of solvent tolerance in Pseudomonas putida S12 mediated by mobile elements. PMID:28401676
Genome sequencing and comparative analysis of an NDM-1-producing Klebsiella pneumoniae ST15 isolated from a refugee patient. PMID:28395597
Unravelling the Complete Genome of Archangium gephyra DSM 2261T and Evolutionary Insights into Myxobacterial Chitinases. PMID:28379546
Quantitative assessment of insertion sequence impact on bacterial genome architecture. PMID:28348858
Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward. PMID:28348846
Evolution of a zoonotic pathogen: investigating prophage diversity in enterohaemorrhagic Escherichia coli O157 by long-read sequencing. PMID:28348836
Genomic analysis of Salmonella enterica serotype Paratyphi A during an outbreak in Cambodia, 2013-2015. PMID:28348832
A transposon-derived small RNA regulates gene expression in Salmonella Typhimurium. PMID:28335027
Systematic and functional identification of small non-coding RNAs associated with exogenous biofuel stress in cyanobacterium Synechocystis sp. PCC 6803. PMID:28286552
Molecular Epidemiology of Colistin-Resistant, Carbapenemase-Producing Klebsiella pneumoniae in Serbia from 2013 to 2016. PMID:28242665
Genome Insight and Comparative Pathogenomic Analysis of Nesterenkonia jeotgali Strain CD08_7 Isolated from Duodenal Mucosa of Celiac Disease Patient. PMID:28210247
An operon for production of bioactive gibberellin A4 phytohormone with wide distribution in the bacterial rice leaf streak pathogen Xanthomonas oryzae pv. oryzicola. PMID:28134995
Complete Genome Sequence of Acinetobacter sp. Strain NCu2D-2 Isolated from a Mouse. PMID:28126932
Adaptive Evolution of Extreme Acidophile Sulfobacillus thermosulfidooxidans Potentially Driven by Horizontal Gene Transfer and Gene Loss. PMID:28115381
Comprehensive analysis of draft genomes of two closely related pseudomonas syringae phylogroup 2b strains infecting mono- and dicotyledon host plants. PMID:28105943
Mosaic structure of Mycobacterium bovis BCG genomes as a representation of phage sequences' mobility. PMID:28105923
Staphylococcus aureus CC395 harbours a novel composite staphylococcal cassette chromosome mec element. PMID:28088766
Comparative Genomics Analysis of Two Different Virulent Bovine Pasteurella multocida Isolates. PMID:28070502
Draft genome sequence of a multidrug-resistant beta-lactamase OXA-357-producing Acinetobacter pittii ST865 clinical isolate from China. PMID:28034597
Single-Molecule Sequencing (PacBio) of the Staphylococcus capitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit Environment. PMID:28018320
Gene Turnover Contributes to the Evolutionary Adaptation of Acidithiobacillus caldus: Insights from Comparative Genomics. PMID:27999570
Intraclonal Genome Stability of the Metallo-β-lactamase SPM-1-producing Pseudomonas aeruginosa ST277, an Endemic Clone Disseminated in Brazilian Hospitals. PMID:27994579
Convergent patterns in the evolution of mealybug symbioses involving different intrabacterial symbionts. PMID:27983719
Mechanisms of Evolution in High-Consequence Drug Resistance Plasmids. PMID:27923922
Carbapenemase-Producing Enterobacteriaceae Recovered from the Environment of a Swine Farrow-to-Finish Operation in the United States. PMID:27919894
Insertion sequences enrichment in extreme Red sea brine pool vent. PMID:27915389
Sponge Microbiota Are a Reservoir of Functional Antibiotic Resistance Genes. PMID:27909433
Genome Dynamics and Molecular Infection Epidemiology of Multidrug-Resistant Helicobacter pullorum Isolates Obtained from Broiler and Free-Range Chickens in India. PMID:27815276
The mosaic architecture of Aeromonas salmonicida subsp. salmonicida pAsa4 plasmid and its consequences on antibiotic resistance. PMID:27812409
Genomic analysis of the multi-drug-resistant clinical isolate Myroides odoratimimus PR63039. PMID:27796642
Draft Genome Sequence of Extremely Drug-Resistant Pseudomonas aeruginosa (ST357) Strain CMC_VB_PA_B22862 Isolated from a Community-Acquired Bloodstream Infection. PMID:27795257
Evolution and Diversity of the Antimicrobial Resistance Associated Mobilome in Streptococcus suis: A Probable Mobile Genetic Elements Reservoir for Other Streptococci. PMID:27774436
Adhesion of the genome-sequenced Lactococcus lactis subsp. cremoris IBB477 strain is mediated by specific molecular determinants. PMID:27687992
In Silico Analysis of a Novel Plasmid from the Coral Pathogen Vibrio coralliilyticus Reveals Two Potential "Ecological Islands". PMID:27681896
A Novel Genome-Editing Platform for Drug-Resistant Acinetobacter baumannii Reveals an AdeR-Unrelated Tigecycline Resistance Mechanism. PMID:27671072
Complete Genome Sequence of the Intracellular Bacterial Symbiont TC1 in the Anaerobic Ciliate Trimyema compressum. PMID:27660797
Comparative Genomics of Acetobacterpasteurianus Ab3, an Acetic Acid Producing Strain Isolated from Chinese Traditional Rice Vinegar Meiguichu. PMID:27611790
Characterization of Two Multidrug-Resistant IncA/C Plasmids from the 1960s by Using the MinION Sequencer Device. PMID:27600047
Complete Sequencing of Plasmids Containing blaOXA-163 and blaOXA-48 in Escherichia coli Sequence Type 131. PMID:27600043
Molecular Epidemiology and Genome Dynamics of New Delhi Metallo-β-Lactamase-Producing Extraintestinal Pathogenic Escherichia coli Strains from India. PMID:27600040
Viruses-to-mobile genetic elements skew in the deep Atlantis II brine pool sediments. PMID:27596223
Genome-based insights into the resistome and mobilome of multidrug-resistant Aeromonas sp. ARM81 isolated from wastewater. PMID:27590015
Diversity of the Tetracycline Mobilome within a Chinese Pig Manure Sample. PMID:27565618
The Genetic Analysis of an Acinetobacter johnsonii Clinical Strain Evidenced the Presence of Horizontal Genetic Transfer. PMID:27548264
Comparative Genomics of the Extreme Acidophile Acidithiobacillus thiooxidans Reveals Intraspecific Divergence and Niche Adaptation. PMID:27548157
PCR-based detection of composite transposons and translocatable units from oral metagenomic DNA. PMID:27521260
Complete Genome Sequence of Serratia marcescens U36365, a Green Pigment-Producing Strain Isolated from a Patient with Urinary Tract Infection. PMID:27516523
Genomic and functional features of the biosurfactant producing Bacillus sp. AM13. PMID:27492417
Genome sequence of OXA-23 producing Acinetobacter baumannii IHIT7853, a carbapenem-resistant strain from a cat belonging to international clone IC1. PMID:27471549
Mobilization of blaBKC-1 by ISKpn23? PMID:27451437
Whole Genome Sequencing for Genomics-Guided Investigations of Escherichia coli O157:H7 Outbreaks. PMID:27446025
The Complete Sequences and Ecological Roles of Two IncP-1β Plasmids, pHB44 and pBS64, Isolated from the Mycosphere of Laccaria proxima. PMID:27445994
Reannotation of Yersinia pestis Strain 91001 Based on Omics Data. PMID:27382076
Experimental single-strain mobilomics reveals events that shape pathogen emergence. PMID:27378783
Evidence of Naturalized Stress-Tolerant Strains of Escherichia coli in Municipal Wastewater Treatment Plants. PMID:27371583
Genomic Analysis of a Serotype 5 Streptococcus pneumoniae Outbreak in British Columbia, Canada, 2005-2009. PMID:27366170
Complete Genome of the Starch-Degrading Myxobacteria Sandaracinus amylolyticus DSM 53668T. PMID:27358428
Whole genomic DNA sequencing and comparative genomic analysis of Arthrospira platensis: high genome plasticity and genetic diversity. PMID:27330141
Genomics of high molecular weight plasmids isolated from an on-farm biopurification system. PMID:27321040
Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile "Ferrovum". PMID:27303384
Structural and functional analysis of the finished genome of the recently isolated toxic Anabaena sp. WA102. PMID:27296936
Overproduction of active efflux pump and variations of OprD dominate in imipenem-resistant Pseudomonas aeruginosa isolated from patients with bloodstream infections in Taiwan. PMID:27296461
High Levels of Antibiotic Resistance Genes and Their Correlations with Bacterial Community and Mobile Genetic Elements in Pharmaceutical Wastewater Treatment Bioreactors. PMID:27294780
Genetic environment of the KPC gene in Acinetobacter baumannii ST2 clone from Puerto Rico and genomic insights into its drug resistance. PMID:27259867
First Report of blaIMP-14 on a Plasmid Harboring Multiple Drug Resistance Genes in Escherichia coli Sequence Type 131. PMID:27246777
Analysis of tigecycline resistance development in clinical Acinetobacter baumannii isolates through a combined genomic and transcriptomic approach. PMID:27240484
Host-Specific Patterns of Genetic Diversity among IncI1-Iγ and IncK Plasmids Encoding CMY-2 β-Lactamase in Escherichia coli Isolates from Humans, Poultry Meat, Poultry, and Dogs in Denmark. PMID:27235431
Peeping into genomic architecture by re-sequencing of Ochrobactrum intermedium M86 strain during laboratory adapted conditions. PMID:27222803
First Genome Sequence of Leptospira interrogans Serovar Pomona, Isolated from a Bovine Abortion. PMID:27198013
DNA Transposition at Work. PMID:27187082
Draft Genome of Shewanella frigidimarina Ag06-30, a Marine Bacterium Isolated from Potter Peninsula, King George Island, Antarctica. PMID:27151790
Identification and analysis of integrons and cassette arrays in bacterial genomes. PMID:27130947
Comparative Screening of Digestion Tract Toxic Genes in Proteus mirabilis. PMID:27010388
Whole genome comparison of six Crocosphaera watsonii strains with differing phenotypes. PMID:27007210
Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131. PMID:27006459
Horizontal Gene Acquisitions, Mobile Element Proliferation, and Genome Decay in the Host-Restricted Plant Pathogen Erwinia Tracheiphila. PMID:26992913
Draft Genome Sequence of Acinetobacter bereziniae HPC229, a Carbapenem-Resistant Clinical Strain from Argentina Harboring blaNDM-1. PMID:26966220
Whole genome sequencing revealed host adaptation-focused genomic plasticity of pathogenic Leptospira. PMID:26833181
Characterization of VCC-1, a Novel Ambler Class A Carbapenemase from Vibrio cholerae Isolated from Imported Retail Shrimp Sold in Canada. PMID:26824956
Novel Aminoglycoside Resistance Transposons and Transposon-Derived Circular Forms Detected in Carbapenem-Resistant Acinetobacter baumannii Clinical Isolates. PMID:26824943
Draft Genome Sequence of Pannonibacter phragmitetus Strain CGMCC9175, a Halotolerant Polycyclic Aromatic Hydrocarbon-Degrading Bacterium. PMID:26823598
Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus "Ferrovum". PMID:26808278
H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes. PMID:26789284
Increasing genomic diversity and evidence of constrained lifestyle evolution due to insertion sequences in Aeromonas salmonicida. PMID:26753691
Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of Xanthomonas translucens. PMID:26729225
ISC, a Novel Group of Bacterial and Archaeal DNA Transposons That Encode Cas9 Homologs. PMID:26712934
Comparison of Four Comamonas Catabolic Plasmids Reveals the Evolution of pBHB To Catabolize Haloaromatics. PMID:26682859
Complete genome sequence of and proposal of Thermofilum uzonense sp. nov. a novel hyperthermophilic crenarchaeon and emended description of the genus Thermofilum. PMID:26664700
The complete genome sequencing of Prevotella intermedia strain OMA14 and a subsequent fine-scale, intra-species genomic comparison reveal an unusual amplification of conjugative and mobile transposons and identify a novel Prevotella-lineage-specific repeat. PMID:26645327
Diversity and Homogeneity among Small Plasmids of Aeromonas salmonicida subsp. salmonicida Linked with Geographical Origin. PMID:26635745
Diversification of broad host range plasmids correlates with the presence of antibiotic resistance genes. PMID:26635412
Genome Analysis of Kingella kingae Strain KWG1 Reveals How a β-Lactamase Gene Inserted in the Chromosome of This Species. PMID:26574009
Stepwise evolution of pandrug-resistance in Klebsiella pneumoniae. PMID:26478520
Draft Genome Sequence of Brazilian Leptospira noguchii Serogroup Panama Strain U73, Isolated from Cattle. PMID:26472831
Identification of ISMyo2, a novel insertion sequence element of IS21 family and its diagnostic potential for detection of Mycobacterium yongonense. PMID:26472562
What's in a Name? ISSwi1 Corresponds to Transposons Related to Tn2 and Tn3. PMID:26443456
The bacterial pangenome as a new tool for analysing pathogenic bacteria. PMID:26442149
Insights on virulence from the complete genome of Staphylococcus capitis. PMID:26441910
Multiple Genetic Mutations Associated with Polymyxin Resistance in Acinetobacter baumannii. PMID:26438500
In Vivo Evolution of Bacterial Resistance in Two Cases of Enterobacter aerogenes Infections during Treatment with Imipenem. PMID:26398358
Characterization of Tn3000, a Transposon Responsible for blaNDM-1 Dissemination among Enterobacteriaceae in Brazil, Nepal, Morocco, and India. PMID:26392506
Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033. PMID:26391348
Genome Sequence of Rough and Smooth Variants of Pleomorphic Strain Lactobacillus farciminis CNCM-I-3699. PMID:26383668
Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia. PMID:26380645
Insights into the Evolutionary Relationships of LytA Autolysin and Ply Pneumolysin-Like Genes in Streptococcus pneumoniae and Related Streptococci. PMID:26349755
Complete sequences of KPC-2-encoding plasmid p628-KPC and CTX-M-55-encoding p628-CTXM coexisted in Klebsiella pneumoniae. PMID:26347725
Comparative genomics analysis of pKF3-94 in Klebsiella pneumoniae reveals plasmid compatibility and horizontal gene transfer. PMID:26347723
Whole transcriptomic analysis of the plant-beneficial rhizobacterium Bacillus amyloliquefaciens SQR9 during enhanced biofilm formation regulated by maize root exudates. PMID:26346121
ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data. PMID:26336060
Draft Genome Sequence of Aquamicrobium defluvii Strain W13Z1, a Psychrotolerant Halotolerant Hydrocarbon-Degrading Bacterium. PMID:26316640
Complete Genome Sequence of Acinetobacter baumannii Strain B8300, Which Displays High Twitching Motility. PMID:26294640
Complete Genome Sequence of Acinetobacter baumannii Strain B8342, a Motility-Positive Clinical Isolate. PMID:26294630
Intraspecies Genomic Diversity and Long-Term Persistence of Bifidobacterium longum. PMID:26275230
Complete Genome Sequence of Staphylococcus aureus FCFHV36, a Methicillin-Resistant Strain Heterogeneously Resistant to Vancomycin. PMID:26272570
Diversity and Global Distribution of IncL/M Plasmids Enabling Horizontal Dissemination of β-Lactam Resistance Genes among the Enterobacteriaceae. PMID:26236726
Draft Genome Sequence of Ochrobactrum anthropi Strain W13P3, a Halotolerant Polycyclic Aromatic Hydrocarbon-Degrading Bacterium. PMID:26227610
Genomic analyses of pneumococci reveal a wide diversity of bacteriocins - including pneumocyclicin, a novel circular bacteriocin. PMID:26215050
Genomic and Functional Portrait of a Highly Virulent, CTX-M-15-Producing H30-Rx Subclone of Escherichia coli Sequence Type 131. PMID:26195517
Insertion Sequence IS26 Reorganizes Plasmids in Clinically Isolated Multidrug-Resistant Bacteria by Replicative Transposition. PMID:26060276
A cis-encoded sRNA, Hfq and mRNA secondary structure act independently to suppress IS200 transposition. PMID:26044710
A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes. PMID:26042526
Candidatus Frankia Datiscae Dg1, the Actinobacterial Microsymbiont of Datisca glomerata, Expresses the Canonical nod Genes nodABC in Symbiosis with Its Host Plant. PMID:26020781
Genetic profiles of Propionibacterium acnes and identification of a unique transposon with novel insertion sequences in sarcoid and non-sarcoid isolates. PMID:25966054
Metronidazole- and carbapenem-resistant bacteroides thetaiotaomicron isolated in Rochester, Minnesota, in 2014. PMID:25941219
Comparative genomics of Pseudomonas syringae pv. syringae strains B301D and HS191 and insights into intrapathovar traits associated with plant pathogenesis. PMID:25940918
Complete Genome Sequence of Bifidobacterium longum GT15: Identification and Characterization of Unique and Global Regulatory Genes. PMID:25894918
Local hopping mobile DNA implicated in pseudogene formation and reductive evolution in an obligate cyanobacteria-plant symbiosis. PMID:25885210
Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260(T), a psychrotrophic lactic acid bacterium isolated from silage. PMID:25879859
War wound treatment complications due to transfer of an IncN plasmid harboring bla(OXA-181) from Morganella morganii to CTX-M-27-producing sequence type 131 Escherichia coli. PMID:25870058
Resources for Genetic and Genomic Analysis of Emerging Pathogen Acinetobacter baumannii. PMID:25845845
Analysis of Streptococcus agalactiae pan-genome for prevalence, diversity and functionality of integrative and conjugative or mobilizable elements integrated in the tRNA(Lys CTT) gene. PMID:25832353
Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea. PMID:25806405
Draft Genome Sequences of Thalassobacter Strains 1CONIMAR09 and 16PALIMAR09, Two Members of the Roseobacter Lineage Isolated from Coastal Areas of the Mediterranean Sea around Mallorca Island. PMID:25744993
Complete genome sequence of hypervirulent and outbreak-associated Acinetobacter baumannii strain LAC-4: epidemiology, resistance genetic determinants and potential virulence factors. PMID:25728466
Insights from 20 years of bacterial genome sequencing. PMID:25722247
A TALE of transposition: Tn3-like transposons play a major role in the spread of pathogenicity determinants of Xanthomonas citri and other xanthomonads. PMID:25691597
Characterization of a novel plasmid, pMAH135, from Mycobacterium avium subsp. hominissuis. PMID:25671431
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes. PMID:25666585
Engineering the genome of Thermus thermophilus using a counterselectable marker. PMID:25605305
Molecular variation and horizontal gene transfer of the homocysteine methyltransferase gene mmuM and its distribution in clinical pathogens. PMID:25552925
Comparative genomic analysis of Acinetobacter baumannii clinical isolates reveals extensive genomic variation and diverse antibiotic resistance determinants. PMID:25534766
Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India. PMID:25520706
Genome dynamics and evolution of Salmonella Typhi strains from the typhoid-endemic zones. PMID:25504040
Evolution of carbapenem-resistant Acinetobacter baumannii revealed through whole-genome sequencing and comparative genomic analysis. PMID:25487793
Identifying pathogenicity islands in bacterial pathogenomics using computational approaches. PMID:25437607
Complete Genome Sequence of Leuconostoc citreum Strain NRRL B-742. PMID:25428963
Diversification of bacterial genome content through distinct mechanisms over different timescales. PMID:25407023
Genome features of Pseudomonas putida LS46, a novel polyhydroxyalkanoate producer and its comparison with other P. putida strains. PMID:25401060
Tn4401 carrying blaKPC is inserted within another insertion in pKpQIL and related plasmids. PMID:25398998
Effects of actin-like proteins encoded by two Bacillus pumilus phages on unstable lysogeny, revealed by genomic analysis. PMID:25344242
Survey of chimeric IStron elements in bacterial genomes: multiple molecular symbioses between group I intron ribozymes and DNA transposons. PMID:25324310
Draft Genome Sequence of Halotolerant Polycyclic Aromatic Hydrocarbon-Degrading Pseudomonas bauzanensis Strain W13Z2. PMID:25323719
Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness. PMID:25280501
Draft Genome Sequence of Brachybacterium phenoliresistens Strain W13A50, a Halotolerant Hydrocarbon-Degrading Bacterium. PMID:25237019
Draft Genome Sequence of Pseudomonas sp. Strain JMM, a Sediment-Hosted Environmental Isolate. PMID:25189587
Microsporidian genomes harbor a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans. PMID:25172905
The contribution of Escherichia coli from human and animal sources to the integron gene pool in coastal waters. PMID:25161650
The primary transcriptome of the marine diazotroph Trichodesmium erythraeum IMS101. PMID:25155278
Mobility and generation of mosaic non-autonomous transposons by Tn3-derived inverted-repeat miniature elements (TIMEs). PMID:25121765
Improved Draft Genome Sequence of Probiotic Strain Lactobacillus gasseri K7. PMID:25059871
Large-scale genomic analysis suggests a neutral punctuated dynamics of transposable elements in bacterial genomes. PMID:24967627
Settling down: the genome of Serratia symbiotica from the aphid Cinara tujafilina zooms in on the process of accommodation to a cooperative intracellular life. PMID:24951564
Elucidation of insertion elements carried on plasmids and in vitro construction of shuttle vectors from the toxic cyanobacterium Planktothrix. PMID:24907328
The genetic diversity of cereulide biosynthesis gene cluster indicates a composite transposon Tnces in emetic Bacillus weihenstephanensis. PMID:24906385
Resistance determinants and mobile genetic elements of an NDM-1-encoding Klebsiella pneumoniae strain. PMID:24905728
Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity. PMID:24884953
Lactobacillus delbrueckii ssp. lactis and ssp. bulgaricus: a chronicle of evolution in action. PMID:24884896
Draft Genome Sequences of Two Isolates of the Roseobacter Group, Sulfitobacter sp. Strains 3SOLIMAR09 and 1FIGIMAR09, from Harbors of Mallorca Island (Mediterranean Sea). PMID:24855294
Type Three Secretion System in Pseudomonas savastanoi Pathovars: Does Timing Matter? PMID:24710300
Factors behind junk DNA in bacteria. PMID:24705080
Visual ModuleOrganizer: a graphical interface for the detection and comparative analysis of repeat DNA modules. PMID:24678954
Comparative analysis of Salmonella genomes identifies a metabolic network for escalating growth in the inflamed gut. PMID:24643865
Chromosomal replication dynamics and interaction with the β sliding clamp determine orientation of bacterial transposable elements. PMID:24614824
Complete nucleotide sequences of two blaKPC-2-bearing IncN Plasmids isolated from sequence type 442 Klebsiella pneumoniae clinical strains four years apart. PMID:24566176
Insertion sequence distribution bias in Archaea. PMID:24558638
Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids. PMID:24517536
Genomic plasticity enables phenotypic variation of Pseudomonas syringae pv. tomato DC3000. PMID:24516535
Bacterial insertion sequences: their genomic impact and diversity. PMID:24499397
Draft Genome Sequence of Gordonia alkanivorans Strain CGMCC6845, a Halotolerant Hydrocarbon-Degrading Bacterium. PMID:24482528
Draft Genome Sequence of Advenella kashmirensis Strain W13003, a Polycyclic Aromatic Hydrocarbon-Degrading Bacterium. PMID:24482505
Pseudomonas putida CSV86: a candidate genome for genetic bioaugmentation. PMID:24475028
Draft Genome Sequence of Brevibacillus panacihumi Strain W25, a Halotolerant Hydrocarbon-Degrading Bacterium. PMID:24459276
Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms. PMID:24450656
Swapping symbionts in spittlebugs: evolutionary replacement of a reduced genome symbiont. PMID:24401857
Novel insight into the genetic context of the cadAB genes from a 4-chloro-2-methylphenoxyacetic acid-degrading Sphingomonas. PMID:24391756
Comparative genomics analysis of Streptococcus isolates from the human small intestine reveals their adaptation to a highly dynamic ecosystem. PMID:24386196
Uncovering Wolbachia diversity upon artificial host transfer. PMID:24376534
Metagenomic analysis reveals significant changes of microbial compositions and protective functions during drinking water treatment. PMID:24352003
Lineage-specific distribution of insertion sequence excision enhancer in enterotoxigenic Escherichia coli isolated from swine. PMID:24334665
Rates of transposition in Escherichia coli. PMID:24307531
Plasmids of carotenoid-producing Paracoccus spp. (Alphaproteobacteria) - structure, diversity and evolution. PMID:24260361
Sequences of two related multiple antibiotic resistance virulence plasmids sharing a unique IS26-related molecular signature isolated from different Escherichia coli pathotypes from different hosts. PMID:24223859
A proposed mechanism for IS607-family serine transposases. PMID:24195768
Integrated omics study delineates the dynamics of lipid droplets in Rhodococcus opacus PD630. PMID:24150943
Metagenomic profiling of antibiotic resistance genes and mobile genetic elements in a tannery wastewater treatment plant. PMID:24098424
Draft Genome Sequence of Sphingobium lactosutens Strain DS20T, Isolated from a Hexachlorocyclohexane Dumpsite. PMID:24051323
Draft Genome Sequence of Sphingobium sp. Strain HDIPO4, an Avid Degrader of Hexachlorocyclohexane. PMID:24051321
Acquired genetic mechanisms of a multiresistant bacterium isolated from a treatment plant receiving wastewater from antibiotic production. PMID:24038701
Reconstructing an ancestral genotype of two hexachlorocyclohexane-degrading Sphingobium species using metagenomic sequence data. PMID:24030592
Draft Genome Sequence of Sphingobium quisquiliarum Strain P25T, a Novel Hexachlorocyclohexane (HCH)-Degrading Bacterium Isolated from an HCH Dumpsite. PMID:24029763
Genome Sequence of Novosphingobium lindaniclasticum LE124T, Isolated from a Hexachlorocyclohexane Dumpsite. PMID:24029761
Comparative analysis of the complete genome of an epidemic hospital sequence type 203 clone of vancomycin-resistant Enterococcus faecium. PMID:24004955
Comparative genome analysis of Mycobacterium avium revealed genetic diversity in strains that cause pulmonary and disseminated disease. PMID:23990995
Draft Genome Sequence of Sphingobium chinhatense Strain IP26T, Isolated from a Hexachlorocyclohexane Dumpsite. PMID:23990581
Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range. PMID:23941402
Structure and evolution of chlorate reduction composite transposons. PMID:23919996
Variation of the virus-related elements within syntenic genomes of the hyperthermophilic Archaeon Aeropyrum. PMID:23872576
Complete genome analysis of three Acinetobacter baumannii clinical isolates in China for insight into the diversification of drug resistance elements. PMID:23826102
Detection and characterization of miniature inverted-repeat transposable elements in “Candidatus Liberibacter asiaticus”. PMID:23813735
Epidemiological and microbiological characteristics of an outbreak caused by OXA-48-producing Enterobacteriaceae in a neonatal intensive care unit in Jerusalem, Israel. PMID:23804390
Metaproteomics reveals abundant transposase expression in mutualistic endosymbionts. PMID:23781067
Identification and evolution of the silkworm helitrons and their contribution to transcripts. PMID:23771679
Lateral transfers of insertion sequences between Wolbachia, Cardinium and Rickettsia bacterial endosymbionts. PMID:23759724
Complete sequences of two plasmids in a blaNDM-1-positive Klebsiella oxytoca isolate from Taiwan. PMID:23752513
From passengers to drivers: Impact of bacterial transposable elements on evolvability. PMID:23734296
Constraints on genome dynamics revealed from gene distribution among the Ralstonia solanacearum species. PMID:23723974
Poles apart: Arctic and Antarctic Octadecabacter strains share high genome plasticity and a new type of xanthorhodopsin. PMID:23671678
Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona. PMID:23637636
Comparative genomics of Wolbachia and the bacterial species concept. PMID:23593012
Pseudomonas syringae pv. actinidiae from recent outbreaks of kiwifruit bacterial canker belong to different clones that originated in China. PMID:23555547
Homologues of bacterial TnpB_IS605 are widespread in diverse eukaryotic transposable elements. PMID:23548000
The complete genome and phenome of a community-acquired Acinetobacter baumannii. PMID:23527001
Characterization of Halomonas sp. ZM3 isolated from the Zelazny Most post-flotation waste reservoir, with a special focus on its mobile DNA. PMID:23497212
Promoter reuse in prokaryotes. PMID:23481313
Detection of a novel active transposable element in Caldicellulosiruptor hydrothermalis and a new search for elements in this genus. PMID:23475285
Genome Sequence of Naphthalene-Degrading Soil Bacterium Pseudomonas putida CSV86. PMID:23469351
Suicide plasmid-dependent IS1-element untargeted integration into Aeromonas veronii bv. sobria generates brown pigment-producing and spontaneous pelleting mutant. PMID:23436029
Modular evolution of TnGBSs, a new family of integrative and conjugative elements associating insertion sequence transposition, plasmid replication, and conjugation for their spreading. PMID:23435978
Genetic analysis of capsular polysaccharide synthesis gene clusters from all serotypes of Streptococcus suis: potential mechanisms for generation of capsular variation. PMID:23416996
Complete Genome Sequence of a Propionibacterium acnes Isolate from a Sarcoidosis Patient. PMID:23405284
Constitutive expression of the cytochrome P450 EthABCD monooxygenase system enables degradation of synthetic dialkyl ethers in Aquincola tertiaricarbonis L108. PMID:23354715
Multiple mechanisms contribute to lateral transfer of an organophosphate degradation (opd) island in Sphingobium fuliginis ATCC 27551. PMID:23275877
TnpPred: A Web Service for the Robust Prediction of Prokaryotic Transposases. PMID:23251097
Genome-derived insights into the biology of the hepatotoxic bloom-forming cyanobacterium Anabaena sp. strain 90. PMID:23148582
Complete genome sequence of the naphthalene-degrading bacterium Pseudomonas stutzeri AN10 (CCUG 29243). PMID:23144395
Sequence of closely related plasmids encoding bla(NDM-1) in two unrelated Klebsiella pneumoniae isolates in Singapore. PMID:23139815
Whole genome sequencing of the fish pathogen Francisella noatunensis subsp. orientalis Toba04 gives novel insights into Francisella evolution and pathogenecity. PMID:23131096
Complete genome sequence of Brucella melitensis biovar 3 strain NI, isolated from an aborted bovine fetus. PMID:23105063
Mobile genetic elements in the bacterial phylum Acidobacteria. PMID:23087842
Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens. PMID:23051057
Sequence features contributing to chromosomal rearrangements in Neisseria gonorrhoeae. PMID:23029370
Promoter propagation in prokaryotes. PMID:22933716
Comparative genomics of the Staphylococcus intermedius group of animal pathogens. PMID:22919635
The complete genome sequence of Natrinema sp. J7-2, a haloarchaeon capable of growth on synthetic media without amino acid supplements. PMID:22911826
OASIS: an automated program for global investigation of bacterial and archaeal insertion sequences. PMID:22904081
Complete genome sequence of Streptococcus mutans GS-5, a serotype c strain. PMID:22887682
Draft genome sequence of Escherichia coli LCT-EC106. PMID:22843582
Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions. PMID:22792073
The physiological opportunism of Desulfitobacterium hafniense strain TCE1 towards organohalide respiration with tetrachloroethene. PMID:22729540
Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish. PMID:22727144
Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome. PMID:22636780
Edwardsiella comparative phylogenomics reveal the new intra/inter-species taxonomic relationships, virulence evolution and niche adaptation mechanisms. PMID:22590641
Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population. PMID:22563047
The Acinetobacter baumannii Oxymoron: Commensal Hospital Dweller Turned Pan-Drug-Resistant Menace. PMID:22536199
Complete genome sequence of the serotype k Streptococcus mutans strain LJ23. PMID:22535936
Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes. PMID:22502997
Variation at the capsule locus, cps, of mistyped and non-typable Streptococcus pneumoniae isolates. PMID:22403189
Housekeeping gene sequencing and multilocus variable-number tandem-repeat analysis to identify subpopulations within Pseudomonas syringae pv. maculicola and Pseudomonas syringae pv. tomato that correlate with host specificity. PMID:22389364
Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria). PMID:22359677
Ultrafast evolution and loss of CRISPRs following a host shift in a novel wildlife pathogen, Mycoplasma gallisepticum. PMID:22346765
Two Strains of Crocosphaera watsonii with Highly Conserved Genomes are Distinguished by Strain-Specific Features. PMID:22232617
Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments. PMID:22216014
Distribution of the multidrug resistance gene cfr in Staphylococcus species isolates from swine farms in China. PMID:22183168
Solving the Problem: Genome Annotation Standards before the Data Deluge. PMID:22180819
Acinetobacter insertion sequence ISAba11 belongs to a novel family that encodes transposases with a signature HHEK motif. PMID:22081580
E622, a miniature, virulence-associated mobile element. PMID:22081398
The UCSC Archaeal Genome Browser: 2012 update. PMID:22080555
Optical mapping and sequencing of the Escherichia coli KO11 genome reveal extensive chromosomal rearrangements, and multiple tandem copies of the Zymomonas mobilis pdc and adhB genes. PMID:22075923
Insight into cross-talk between intra-amoebal pathogens. PMID:22047552
Comparative genomic analysis of Streptococcus suis reveals significant genomic diversity among different serotypes. PMID:22026465
The influence of the accessory genome on bacterial pathogen evolution. PMID:22016845
Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge. PMID:22016806
Miniature transposable sequences are frequently mobilized in the bacterial plant pathogen Pseudomonas syringae pv. phaseolicola. PMID:22016774
ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria. PMID:22009673
Comparative genomics study of multi-drug-resistance mechanisms in the antibiotic-resistant Streptococcus suis R61 strain. PMID:21966396
A bacterial genome in transition--an exceptional enrichment of IS elements but lack of evidence for recent transposition in the symbiont Amoebophilus asiaticus. PMID:21943072
Short- and long-term evolutionary dynamics of bacterial insertion sequences: insights from Wolbachia endosymbionts. PMID:21940637
Complete genome sequence of the fish pathogen Flavobacterium branchiophilum. PMID:21926215
Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1, which causes citrus bacterial spot disease, and related strains provides insights into virulence and host specificity. PMID:21908674
Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential. PMID:21901521
Genome-wide protein localization prediction strategies for gram negative bacteria. PMID:21810203
The genome sequence of Brucella pinnipedialis B2/94 sheds light on the evolutionary history of the genus Brucella. PMID:21745361
Reductive evolution of bacterial genome in insect gut environment. PMID:21737395
Yersinia enterocolitica palearctica serobiotype O:3/4--a successful group of emerging zoonotic pathogens. PMID:21733159
Virulence determinants, drug resistance and mobile genetic elements of Laribacter hongkongensis: a genome-wide analysis. PMID:21711902
Complete genome sequence of the bacterium Porphyromonas gingivalis TDC60, which causes periodontal disease. PMID:21705612
Haloquadratum walsbyi: limited diversity in a global pond. PMID:21701686
Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance. PMID:21666019
Genome sequence of Lactococcus garvieae UNIUD074, isolated in Italy from a lactococcosis outbreak. PMID:21602331
ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes. PMID:21443786
Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements. PMID:21359229
Complete genome sequence of a Yersinia enterocolitica "Old World" (3/O:9) strain and comparison with the "New World" (1B/O:8) strain. PMID:21325549
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes. PMID:21298028
Insights into plant biomass conversion from the genome of the anaerobic thermophilic bacterium Caldicellulosiruptor bescii DSM 6725. PMID:21227922
Insertion sequence-excision enhancer removes transposable elements from bacterial genomes and induces various genomic deletions. PMID:21224843
Distribution of putative virulence genes in Streptococcus mutans strains does not correlate with caries experience. PMID:21209168
The genome sequence of E. coli W (ATCC 9637): comparative genome analysis and an improved genome-scale reconstruction of E. coli. PMID:21208457
Burst expansion, distribution and diversification of MITEs in the silkworm genome. PMID:20875122
Intergenic transposable elements are not randomly distributed in bacteria. PMID:20697140
The insertion sequences of Anabaena sp. strain PCC 7120 and their effects on its open reading frames. PMID:20656907
Mobile genetic element proliferation and gene inactivation impact over the genome structure and metabolic capabilities of Sodalis glossinidius, the secondary endosymbiont of tsetse flies. PMID:20649993
Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium. PMID:20628610
Structural characterization of ISCR8, ISCR22, and ISCR23, subgroups of IS91-like insertion elements. PMID:20625149
Characterization of the transposase encoded by IS256, the prototype of a major family of bacterial insertion sequence elements. PMID:20543074
Small variable segments constitute a major type of diversity of bacterial genomes at the species level. PMID:20433696
Functional organization of the inverted repeats of IS30. PMID:20418401
A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. PMID:20368977
Partial chromosome sequence of Spiroplasma citri reveals extensive viral invasion and important gene decay. PMID:20363791
Exploring repetitive DNA landscapes using REPCLASS, a tool that automates the classification of transposable elements in eukaryotic genomes. PMID:20333191
Integrating prokaryotes and eukaryotes: DNA transposases in light of structure. PMID:20067338
Genomic characterization of the Yersinia genus. PMID:20047673
The genome of the amoeba symbiont "Candidatus Amoebophilus asiaticus" reveals common mechanisms for host cell interaction among amoeba-associated bacteria. PMID:20023027
Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium. PMID:19948807
ACLAME: a CLAssification of Mobile genetic Elements, update 2010. PMID:19933762
ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomes. PMID:19906702
Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PMID:19893622
Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricum type E strains. PMID:19804621
Brucella microti: the genome sequence of an emerging pathogen. PMID:19653890
Does gene translocation accelerate the evolution of laterally transferred genes? PMID:19474197
Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1. PMID:19465526
Methylobacterium genome sequences: a reference blueprint to investigate microbial metabolism of C1 compounds from natural and industrial sources. PMID:19440302
Microbial co-habitation and lateral gene transfer: what transposases can tell us. PMID:19393086
Assembling the marine metagenome, one cell at a time. PMID:19390573
Gene Context and DNA rearrangements in the carbapenemase locus of division II strains of Bacteroides fragilis. PMID:19364865
The complete genome sequence of Staphylothermus marinus reveals differences in sulfur metabolism among heterotrophic Crenarchaeota. PMID:19341479
Oenococcus oeni genome plasticity is associated with fitness. PMID:19218413
Distribution and abundance of nontoxic mutants of cyanobacteria in lakes of the Alps. PMID:19214623
Transposition of an insertion sequence, ISTth7, in the genome of the extreme thermophile Thermus thermophilus HB8. PMID:19016874
Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences. PMID:18751731
A recently active miniature inverted-repeat transposable element, Chunjie, inserted into an operon without disturbing the operon structure in Geobacter uraniireducens Rf4. PMID:18660544
Nontoxic strains of cyanobacteria are the result of major gene deletion events induced by a transposable element. PMID:18502770
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. PMID:18452608
Identification of mobile elements and pseudogenes in the Shewanella oneidensis MR-1 genome. PMID:18378659
Comparative analysis of Acinetobacters: three genomes for three lifestyles. PMID:18350144
Whole-genome comparison of disease and carriage strains provides insights into virulence evolution in Neisseria meningitidis. PMID:18305155
Genome sequence of Thermofilum pendens reveals an exceptional loss of biosynthetic pathways without genome reduction. PMID:18263724
The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. PMID:18245285
Insertion Sequences show diverse recent activities in Cyanobacteria and Archaea. PMID:18218090
IS4 family goes genomic. PMID:18215304
Systematic identification of stem-loop containing sequence families in bacterial genomes. PMID:18201379
Analysis of the neurotoxin complex genes in Clostridium botulinum A1-A4 and B1 strains: BoNT/A3, /Ba4 and /B1 clusters are located within plasmids. PMID:18060065
Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. PMID:17999997
A survey of bacterial insertion sequences using IScan. PMID:17686783
In vitro transposition of ISY100, a bacterial insertion sequence belonging to the Tc1/mariner family. PMID:17680987
Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site. PMID:17578578
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains. PMID:17550600
Mycobacterium avium in the postgenomic era. PMID:17428883
Towards pathogenomics: a web-based resource for pathogenicity islands. PMID:17090594
CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes. PMID:17062155
Genomic patterns of pathogen evolution revealed by comparison of Burkholderia pseudomallei, the causative agent of melioidosis, to avirulent Burkholderia thailandensis. PMID:16725056 -
ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomes
PubMed citations: 21.
21 articles citing: ISbrowser: an extension of ISfinder for visualizing insertion sequences in prokaryotic genomes
Integrative Genomics Sheds Light on Evolutionary Forces Shaping the Acidithiobacillia Class Acidophilic Lifestyle. PMID:35242113
Molecular Characterisation of Vancomycin-Resistant Enterococcus faecium Isolates Belonging to the Lineage ST117/CT24 Causing Hospital Outbreaks. PMID:34646248
digIS: towards detecting distant and putative novel insertion sequence elements in prokaryotic genomes. PMID:34016050
Functional Analysis of Phenazine Biosynthesis Genes in Burkholderia spp. PMID:33741619
Web-Based Genome Analysis of Bacterial Meningitis Pathogens for Public Health Applications Using the Bacterial Meningitis Genomic Analysis Platform (BMGAP). PMID:33324449
Structures of ISCth4 transpososomes reveal the role of asymmetry in copy-out/paste-in DNA transposition. PMID:33006208
Prevalence and Distribution Characteristics of blaKPC-2 and blaNDM-1 Genes in Klebsiella pneumoniae. PMID:32903853
Characterization of a Novel mcr-8.2-Bearing Plasmid in ST395 Klebsiella pneumoniae of Chicken Origin. PMID:32606828
A hybrid sub-lineage of Listeria monocytogenes comprising hypervirulent isolates. PMID:31570766
Comparative genomic analysis of Bacillus paralicheniformis MDJK30 with its closely related species reveals an evolutionary relationship between B. paralicheniformis and B. licheniformis. PMID:30975079
Wild eel microbiome reveals that skin mucus of fish could be a natural niche for aquatic mucosal pathogen evolution. PMID:29268781
Distribution of 2,4-Diacetylphloroglucinol Biosynthetic Genes among the Pseudomonas spp. Reveals Unexpected Polyphyletism. PMID:28713346
Sense overlapping transcripts in IS1341-type transposase genes are functional non-coding RNAs in archaea. PMID:25806405
Large-scale genomic analysis suggests a neutral punctuated dynamics of transposable elements in bacterial genomes. PMID:24967627
Spy: a new group of eukaryotic DNA transposons without target site duplications. PMID:24966181
Chromosomal replication dynamics and interaction with the β sliding clamp determine orientation of bacterial transposable elements. PMID:24614824
Analysis of IS1236-mediated gene amplification events in Acinetobacter baylyi ADP1. PMID:22707704
Genome sequencing of a genetically tractable Pyrococcus furiosus strain reveals a highly dynamic genome. PMID:22636780
ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes. PMID:21443786
Insertion sequence-driven evolution of Escherichia coli in chemostats. PMID:21399911
The complete genome of Propionibacterium freudenreichii CIRM-BIA1, a hardy actinobacterium with food and probiotic applications. PMID:20668525
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gene
metasource: Fairsharing.org
version: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
insertion sequence
metasource: Fairsharing.org
version: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
nucleic acid sequence
metasource: Fairsharing.org
version: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
transposable element
metasource: Fairsharing.org
version: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
region
metasource: Fairsharing.org
version: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
coding and non-coding dna
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
prokaryotic genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
literature and language
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.354592
phylogeny
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.354592
mobile genetic elements
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.354592
model organisms
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.354592
sequencing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:08.354592
Tags
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gene
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
insertion sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
nucleic acid sequence
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
transposable element
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
region
metasource: Fairsharing.orgversion: FAIRsharing.org: IS Finder; Insertion Sequence Finder; DOI: https://doi.org/10.25504/FAIRsharing.xhpc3h; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
coding and non-coding dna
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
prokaryotic genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
literature and language
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:08.354592
phylogeny
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:08.354592
mobile genetic elements
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:08.354592
model organisms
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:08.354592
sequencing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:08.354592
gene insertion sequence nucleic acid sequence transposable element region nucleic acid sequence coding and non-coding dna genomics prokaryotic genome literature and language phylogeny mobile genetic elements model organisms sequencing
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