MOsDB
MOsDB (http://mips.gsf.de/proj/plant/jsf/rice/index.jsp) is a resource for publicly available sequences of the rice (Oryza sativa L.) genome. Our goal at MOsDB is to provide all available data about rice genes and genomics, including (in the future) mutant information and expression profiles. At this moment, the MOsDB database includes current (updated on daily basis) published sequences and gene annotation information of two Oryza sativa subspecies: japonica and indica. Currenty (Jan. 2005), MOsDB houses over 60000 gene calls on the pseudomolecule assembly (12 chromosomes) as provided by TIGR (http://www.tigr.org/tdb/e2k1/osa1/index.shtml). When the International Rice Genome Sequencing Project (IRGSP) genome sequence and annotation becomes available, that will be included in parallel. To browse data, the user can navigate in a genome-oriented way. Starting from a chromosome list, one can retrieve detailed information on the chromsosome as well as links to sequence and genetic elements. The genetic element list links to reports on the protein genes or other features on display. Sequences can be viewed and downloaded as HTML, XML, FASTA and GAMEXML (Apollo annotation tool compatible) format. To visualize and browse genetic elements on a specified chromosome or contig, a graphical interface, DBBrowser, was developed. Easy access to the MOsDB data is also provided through web services (http://www.eu-plant-genome.net) for application-level access.
Description
More detailed information about this field from each metasource.
MOsDB (http://mips.gsf.de/proj/plant/jsf/rice/index.jsp) is a resource for publicly available sequences of the rice (Oryza sativa L.) genome. Our goal at MOsDB is to provide all available data about rice genes and genomics, including (in the future) mutant information and expression profiles. At this moment, the MOsDB database includes current (updated on daily basis) published sequences and gene annotation information of two Oryza sativa subspecies: japonica and indica. Currenty (Jan. 2005), MOsDB houses over 60000 gene calls on the pseudomolecule assembly (12 chromosomes) as provided by TIGR (http://www.tigr.org/tdb/e2k1/osa1/index.shtml). When the International Rice Genome Sequencing Project (IRGSP) genome sequence and annotation becomes available, that will be included in parallel. To browse data, the user can navigate in a genome-oriented way. Starting from a chromosome list, one can retrieve detailed information on the chromsosome as well as links to sequence and genetic elements. The genetic element list links to reports on the protein genes or other features on display. Sequences can be viewed and downloaded as HTML, XML, FASTA and GAMEXML (Apollo annotation tool compatible) format. To visualize and browse genetic elements on a specified chromosome or contig, a graphical interface, DBBrowser, was developed. Easy access to the MOsDB data is also provided through web services (http://www.eu-plant-genome.net) for application-level access.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://mips.gsf.de/proj/plant/jsf/rice/index.jspWebpage
More detailed information about this field from each metasource.
http://mips.gsf.de/proj/plant/jsf/rice/index.jsp
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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More detailed information about this field from each metasource.
plant databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
rice
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
plant databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
rice
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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