R3194Q last accessed: 2022-11-04

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

noncode
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

Other names: noncode

NONCODE is a database of noncoding RNAs (except tRNAs and rRNAs), including long noncoding (lnc) RNAs. Information contained within the database includes human lncRNA–disease relationships and single nucleotide polymorphism-lncRNA–disease relationships; human exosome lncRNA expression profiles; and predicted RNA secondary structures of human transcripts. This resource has not been updated since 2017, and therefore its status has been marked as Uncertain. Please get in touch if you have any information about the current status of this resource.

Webpage:

http://www.noncode.org

Licence:

Name: Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0)
URL: https://creativecommons.org/licenses/by-nc-sa/4.0/

Publications: (6)

Publications
More detailed information about this field from each metasource.

NONCODE 2016: an informative and valuable data source of long non-coding RNAs
PMID: 26586799
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

NONCODEV5: a comprehensive annotation database for long non-coding RNAs
PMID: 29140524
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

NONCODE v3.0: integrative annotation of long noncoding RNAs
PMID: 22135294
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

NONCODE: an integrated knowledge database of non-coding RNAs
PMID: 15608158
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

NONCODE v2.0: decoding the non-coding
PMID: 18000000
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

https://doi.org/10.1093/nar/gkaa1046
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

NONCODE 2016: an informative and valuable data source of long non-coding RNAs PubMed citations: 291.

291 articles citing: NONCODE 2016: an informative and valuable data source of long non-coding RNAs

lncRNA-miRNA-mRNA ceRNA Network Involved in Sheep Prolificacy: An Integrated Approach. PMID:35893032
Construction of a lncRNA-mRNA Co-Expression Network for Nasopharyngeal Carcinoma. PMID:35875165
lncRNA HIT000218960 enhances resistance to 5-fluorouracil by promoting HMGA2 and activating the AKT/mTOR/P70S6K pathway in gastric cancer cells. PMID:35837027
Functional Micropeptides Encoded by Long Non-Coding RNAs: A Comprehensive Review. PMID:35769907
The Emerging Roles of Long Non-Coding RNAs in Intellectual Disability and Related Neurodevelopmental Disorders. PMID:35682796
Identification of Long Noncoding RNAs Involved in Eyelid Pigmentation of Hereford Cattle. PMID:35601493
Annotation and functional characterization of long noncoding RNAs deregulated in pancreatic adenocarcinoma. PMID:35567709
Potential Key Markers for Predicting the Prognosis of Gastric Adenocarcinoma Based on the Expression of Ferroptosis-Related lncRNA. PMID:35528617
Non-Coding RNAs in Tuberculosis Epidemiology: Platforms and Approaches for Investigating the Genome's Dark Matter. PMID:35457250
Bronchial epithelium epithelial-mesenchymal plasticity forms aberrant basaloid-like cells in vitro. PMID:35438006
SGII: Systematic Identification of Essential lncRNAs in Mouse and Human Genome With lncRNA-Protein-Protein Heterogeneous Interaction Network. PMID:35386279
Functional Similarities of Protein-Coding Genes in Topologically Associating Domains and Spatially-Proximate Genomic Regions. PMID:35328034
Emerging function and clinical significance of extracellular vesicle noncoding RNAs in lung cancer. PMID:35317517
Long non-coding RNA TUG1 sponges microRNA-9 to protect podocytes from high glucose-induced apoptosis and mitochondrial dysfunction via SIRT1 upregulation. PMID:35222713
LncRNA POU3F3 promotes melanoma cell proliferation by downregulating lncRNA MEG3. PMID:35201451
Predicting lncRNA-Protein Interactions by Heterogenous Network Embedding. PMID:35186016
Perillyl alcohol and quercetin modulate the expression of non-coding RNAs MIAT, H19, miR-29a, and miR-33a in pulmonary artery hypertension in rats. PMID:35155877
ImReLnc: Identifying Immune-Related LncRNA Characteristics in Human Cancers Based on Heuristic Correlation Optimization. PMID:35082835
Distinct transcription kinetics of pluripotent cell states. PMID:35020268
The long non-coding RNA landscape of Candida yeast pathogens. PMID:34916523
Advances in Non-Coding RNA Sequencing. PMID:34842804
LncRNAs in domesticated animals: from dog to livestock species. PMID:34773482
The Role of Long Non-coding RNAs in Human Imprinting Disorders: Prospective Therapeutic Targets. PMID:34760887
Regulatory network of miRNA, lncRNA, transcription factor and target immune response genes in bovine mastitis. PMID:34753991
LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system. PMID:34751395
RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation. PMID:34718734
Non-Coding RNA in Systemic Sclerosis: A Valuable Tool for Translational and Personalized Medicine. PMID:34573278
LncRNA OIP5-AS1 Regulates the Warburg Effect Through miR-124-5p/IDH2/HIF-1α Pathway in Cervical Cancer. PMID:34513821
lncExplore: a database of pan-cancer analysis and systematic functional annotation for lncRNAs from RNA-sequencing data. PMID:34464437
Learning the Fastest RNA Folding Path Based on Reinforcement Learning and Monte Carlo Tree Search. PMID:34361572
The first draft genome of Picrorhiza kurrooa, an endangered medicinal herb from Himalayas. PMID:34294764
The Molecular Basis of Depression: Implications of Sex-Related Differences in Epigenetic Regulation. PMID:34276306
Identification of Regulatory Functions of LncRNAs Associated With T. circumcincta Infection in Adult Sheep. PMID:34194481
Identification and Analysis of Long Non-coding RNAs in Leuciscus waleckii Adapted to Highly Alkaline Conditions. PMID:34177616
KCNQ1OT1 lncRNA affects the proliferation, apoptosis, and chemoresistance of small cell lung cancer cells via the JAK2/STAT3 axis. PMID:34164525
Classification of Breast Cancer and Breast Neoplasm Scenarios Based on Machine Learning and Sequence Features from lncRNAs-miRNAs-Diseases Associations. PMID:34152557
A machine learning framework that integrates multi-omics data predicts cancer-related LncRNAs. PMID:34134612
Identification and characterization of immune-related lncRNAs and lncRNA-miRNA-mRNA networks of Paralichthys olivaceus involved in Vibrio anguillarum infection. PMID:34130627
LncRNA linc00152/NF-κB feedback loop promotes fibroblast-like synovial cells inflammation in rheumatoid arthritis via regulating miR-103a/TAK1 axis and YY1 expression. PMID:34061447
Long non-coding RNA HIT000218960 is associated with poor prognosis in patients with gastric cancer. PMID:34055048
Lantern: an integrative repository of functional annotations for lncRNAs in the human genome. PMID:34039271
Genome-wide long non-coding RNA association study on Han Chinese women identifies lncHSAT164 as a novel susceptibility gene for breast cancer. PMID:34018994
AFAP1-AS1: a rising star among oncogenic long non-coding RNAs. PMID:33999309
Identification of the conserved long non-coding RNAs in myogenesis. PMID:33971818
miRMaster 2.0: multi-species non-coding RNA sequencing analyses at scale. PMID:33872372
Implication of repeat insertion domains in the trans-activity of the long non-coding RNA ANRIL. PMID:33872355
Long Noncoding RNAs and Their Therapeutic Promise in Diabetic Nephropathy. PMID:33853077
AlnC: An extensive database of long non-coding RNAs in angiosperms. PMID:33852582
CALINCA-A Novel Pipeline for the Identification of lncRNAs in Podocyte Disease. PMID:33804736
Noncoding RNAs in Glioblastoma: Emerging Biological Concepts and Potential Therapeutic Implications. PMID:33800703
Roles of Non-Coding RNAs in Cervical Cancer Metastasis. PMID:33777808
Long read, isoform aware sequencing of mouse nucleus accumbens after chronic cocaine treatment. PMID:33762610
Identification of 11 candidate structured noncoding RNA motifs in humans by comparative genomics. PMID:33750298
EZH2 Dynamically Associates With Non-coding RNAs in Mouse Hearts After Acute Angiotensin II Treatment. PMID:33732733
RNA-Seq Implies Divergent Regulation Patterns of LincRNA on Spermatogenesis and Testis Growth in Goats. PMID:33653002
Alterations of long non-coding RNA and mRNA profiles associated with extracellular matrix homeostasis and vascular aging in rats. PMID:33645431
Evolutionarily Conserved Long Non-coding RNA Regulates Gene Expression in Cytokine Storm During COVID-19. PMID:33520952
Predicting lincRNA-Disease Association in Heterogeneous Networks Using Co-regularized Non-negative Matrix Factorization. PMID:33510774
Barley Anther and Meiocyte Transcriptome Dynamics in Meiotic Prophase I. PMID:33510760
LncRNA UCA1 Enhances Cisplatin Resistance by Regulating CYP1B1-mediated Apoptosis via miR-513a-3p in Human Gastric Cancer. PMID:33469378
Effect of emodin on long non-coding RNA-mRNA networks in rats with severe acute pancreatitis-induced acute lung injury. PMID:33438315
RNA-Seq Whole Transcriptome Analysis of Bovine Mammary Epithelial Cells in Response to Intracellular Staphylococcus aureus. PMID:33426011
Pathogenetic Role and Clinical Implications of Regulatory RNAs in Biliary Tract Cancer. PMID:33375055
Long Non-Coding RNAs, the Dark Matter: An Emerging Regulatory Component in Plants. PMID:33374835
Global Analysis of Gene Expression Profiles Provides Novel Insights into the Development and Evolution of the Large Crustacean Eriocheir sinensis. PMID:33346084
The lncRNA Toolkit: Databases and In Silico Tools for lncRNA Analysis. PMID:33339309
Long Non-coding RNAs in Cancer: Implications for Diagnosis, Prognosis, and Therapy. PMID:33330574
Our emerging understanding of the roles of long non-coding RNAs in normal liver function, disease, and malignancy. PMID:33294829
The landscape of long noncoding RNA-involved and tumor-specific fusions across various cancers. PMID:33275145
EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. PMID:33221906
FishDB: an integrated functional genomics database for fishes. PMID:33203359
LINC00473 as an Immediate Early Gene under the Control of the EGR1 Transcription Factor. PMID:33198374
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. PMID:33196801
deepBase v3.0: expression atlas and interactive analysis of ncRNAs from thousands of deep-sequencing data. PMID:33175131
Molecular landscape of long noncoding RNAs in brain disorders. PMID:33173194
Oncogene or tumor suppressor? Long noncoding RNAs role in patient's prognosis varies depending on disease type. PMID:33152534
A small protein encoded by a putative lncRNA regulates apoptosis and tumorigenicity in human colorectal cancer cells. PMID:33112233
Non-Coding RNAs in Psychiatric Disorders and Suicidal Behavior. PMID:33101077
Uncovering epigenetic landscape: a new path for biomarkers identification and drug development. PMID:33089404
A systematic evaluation of bioinformatics tools for identification of long noncoding RNAs. PMID:33055239
Long non-coding RNAs: emerging players regulating plant abiotic stress response and adaptation. PMID:33046001
A reciprocal feedback of Myc and lncRNA MTSS1-AS contributes to extracellular acidity-promoted metastasis of pancreatic cancer. PMID:32929338
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
An integrative proteogenomics approach reveals peptides encoded by annotated lincRNA in the mouse kidney inner medulla. PMID:32866085
Identifying Cancer-Related lncRNAs Based on a Convolutional Neural Network. PMID:32850792
Role of Non-coding RNAs in the Pathogenesis of Endometriosis. PMID:32850438
Genome-Wide Analysis of the FOXA1 Transcriptional Network Identifies Novel Protein-Coding and Long Noncoding RNA Targets in Colorectal Cancer Cells. PMID:32839292
Principles and innovative technologies for decrypting noncoding RNAs: from discovery and functional prediction to clinical application. PMID:32778133
Involvement of long noncoding RNAs in the pathogenesis of autoimmune diseases. PMID:32743525
LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities. PMID:32657379
Insights into lncRNAs in Alzheimer's disease mechanisms. PMID:32605500
LRIK interacts with the Ku70-Ku80 heterodimer enhancing the efficiency of NHEJ repair. PMID:32587379
ProbeRating: a recommender system to infer binding profiles for nucleic acid-binding proteins. PMID:32573679
Role for carbohydrate response element-binding protein (ChREBP) in high glucose-mediated repression of long noncoding RNA Tug1. PMID:32467232
lncRNA OGFRP1 functions as a ceRNA to promote the progression of prostate cancer by regulating SARM1 level via miR-124-3p. PMID:32428870
Long Noncoding RNA H19 Facilitates Small Cell Lung Cancer Tumorigenesis Through miR-140-5p/FGF9 Axis. PMID:32425552
Long Non-Coding RNAs in Biliary Tract Cancer-An Up-to-Date Review. PMID:32331331
A long non-coding RNA OLBC15 promotes triple-negative breast cancer progression via enhancing ZNF326 degradation. PMID:32329931
Sex-Specific Role for the Long Non-coding RNA LINC00473 in Depression. PMID:32304628
Online Databases and Non-coding RNAs in Cardiovascular Diseases. PMID:32285405
The Emerging Role of ncRNAs and RNA-Binding Proteins in Mitotic Apparatus Formation. PMID:32245090
Long noncoding RNA LINC00844-mediated molecular network regulates expression of drug metabolizing enzymes and nuclear receptors in human liver cells. PMID:32222775
Optimization of small RNA library preparation protocol from human urinary exosomes. PMID:32188466
PncStress: a manually curated database of experimentally validated stress-responsive non-coding RNAs in plants. PMID:32185394
ncRNAs: New Players in Mitochondrial Health and Disease? PMID:32180794
Engineering salinity tolerance in plants: progress and prospects. PMID:32152761
ncRPheno: a comprehensive database platform for identification and validation of disease related noncoding RNAs. PMID:32122231
Systematic identification of long intergenic non-coding RNAs expressed in bovine oocytes. PMID:32085734
Probing lncRNA-Protein Interactions: Data Repositories, Models, and Algorithms. PMID:32082358
Long non-coding RNAs in immune regulation and their potential as therapeutic targets. PMID:32058929
Genome-wide identification and characterization of novel long non-coding RNA in Ruminal tissue affected with sub-acute Ruminal acidosis from Holstein cattle. PMID:32043213
Role of microRNA and Long Non-Coding RNA in Hepatocellular Carcinoma. PMID:31939724
Widespread Dysregulation of Long Noncoding Genes Associated With Fatty Acid Metabolism, Cell Division, and Immune Response Gene Networks in Xenobiotic-exposed Rat Liver. PMID:31926019
Non-coding RNAs underlie genetic predisposition to breast cancer. PMID:31910864
Current role of non-coding RNAs in the clinical setting. PMID:31891017
Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing. PMID:31885040
IDLDA: An Improved Diffusion Model for Predicting LncRNA-Disease Associations. PMID:31867043
Profiles of Long Non-Coding RNAs and mRNA Expression in Human Macrophages Regulated by Interleukin-27. PMID:31835347
Are Long Noncoding RNAs New Potential Biomarkers in Gastrointestinal Stromal Tumors (GISTs)? The Role of H19 and MALAT1. PMID:31827510
Functional impact of the long non-coding RNA MEG3 deletion by CRISPR/Cas9 in the human triple negative metastatic Hs578T cancer cell line. PMID:31788068
ODNA: a manually curated database of noncoding RNAs associated with orthopedics. PMID:31781773
Regulation of mTOR signaling by long non-coding RNA. PMID:31751821
SyntDB: defining orthologues of human long noncoding RNAs across primates. PMID:31728519
TET2-interacting long noncoding RNA promotes active DNA demethylation of the MMP-9 promoter in diabetic wound healing. PMID:31653825
lncRNA RMST Enhances DNMT3 Expression through Interaction with HuR. PMID:31636039
Small RNA and degradome deep sequencing reveal respective roles of cold-related microRNAs across Chinese wild grapevine and cultivated grapevine. PMID:31615400
LncRNA LUCAT1 as a novel prognostic biomarker for patients with papillary thyroid cancer. PMID:31591432
The Long Noncoding RNA HEAL Regulates HIV-1 Replication through Epigenetic Regulation of the HIV-1 Promoter. PMID:31551335
Insights into the Functions of LncRNAs in Drosophila. PMID:31546813
Interior circular RNA. PMID:31532701
Comprehensive Characterization of Somatic Mutations Impacting lncRNA Expression for Pan-Cancer. PMID:31525663
LncRNA SNHG6 promotes chemoresistance through ULK1-induced autophagy by sponging miR-26a-5p in colorectal cancer cells. PMID:31516391
LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search. PMID:31510672
New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform. PMID:31504171
Efficient Mining of Variants From Trios for Ventricular Septal Defect Association Study. PMID:31440271
Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe. PMID:31426739
Decreased Expression of Long Non-Coding RNA GMDS Divergent Transcript (GMDS-DT) is a Potential Biomarker for Poor Prognosis of Hepatocellular Carcinoma. PMID:31423008
DNILMF-LDA: Prediction of lncRNA-Disease Associations by Dual-Network Integrated Logistic Matrix Factorization and Bayesian Optimization. PMID:31409034
The Magnitude of IFN-γ Responses Is Fine-Tuned by DNA Architecture and the Non-coding Transcript of Ifng-as1. PMID:31377117
Functional genetic variants can mediate their regulatory effects through alteration of transcription factor binding. PMID:31375681
An expanded landscape of human long noncoding RNA. PMID:31350901
Long Non-Coding RNA Function in CD4+ T Cells: What We Know and What Next? PMID:31336952
Regulation of cytochrome P450 expression by microRNAs and long noncoding RNAs: Epigenetic mechanisms in environmental toxicology and carcinogenesis. PMID:31305208
Computational Methods for Mapping, Assembly and Quantification for Coding and Non-coding Transcripts. PMID:31193391
Genome-wide identification and characterization of long non-coding RNAs expressed during sheep fetal and postnatal hair follicle development. PMID:31186438
LncRNAs Regulatory Networks in Cellular Senescence. PMID:31141943
Human transposons are an abundant supply of transcription factor binding sites and promoter activities in breast cancer cell lines. PMID:31061680
An Overview of Methodologies in Studying lncRNAs in the High-Throughput Era: When Acronyms ATTACK! PMID:30945176
Integrated analysis of lncRNA and mRNA repertoires in Marek's disease infected spleens identifies genes relevant to resistance. PMID:30922224
Long Noncoding RNA and Protein Interactions: From Experimental Results to Computational Models Based on Network Methods. PMID:30875752
TADKB: Family classification and a knowledge base of topologically associating domains. PMID:30871473
The cellular landscape of mid-size noncoding RNA. PMID:30843375
Characterization of lncRNA-miRNA-mRNA Network to Reveal Potential Functional ceRNAs in Bovine Skeletal Muscle. PMID:30842787
Sex-Biased lncRNAs Inversely Correlate With Sex-Opposite Gene Coexpression Networks in Diversity Outbred Mouse Liver. PMID:30840070
Multi-Omics Approaches to Study Long Non-coding RNA Function in Atherosclerosis. PMID:30838214
Identification and Expression Analysis of Long Noncoding RNAs in Fat-Tail of Sheep Breeds. PMID:30787031
Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information. PMID:30782113
Long Non-Coding RNAs in the Regulation of Gene Expression: Physiology and Disease. PMID:30781588
Long noncoding RNA and mRNA expression profiles following igf3 knockdown in common carp, Cyprinus carpio. PMID:30778253
Re-analysis of the coral Acropora digitifera transcriptome reveals a complex lncRNAs-mRNAs interaction network implicated in Symbiodinium infection. PMID:30651068
Propofol Suppresses Proinflammatory Cytokine Production by Increasing ABCA1 Expression via Mediation by the Long Noncoding RNA LOC286367. PMID:30647536
A pan-transcriptome analysis shows that disease resistance genes have undergone more selection pressure during barley domestication. PMID:30616511
lncRNA profile study reveals the mRNAs and lncRNAs associated with docetaxel resistance in breast cancer cells. PMID:30568280
Identification of long intergenic non-coding RNAs (lincRNAs) deregulated in gastrointestinal stromal tumors (GISTs). PMID:30557328
LONG-NONCODING RNAs in gastroesophageal cancers. PMID:30533569
ENPD - A Database of Eukaryotic Nucleic Acid Binding Proteins: Linking Gene Regulations to Proteins. PMID:30476229
Gene Ontology-based function prediction of long non-coding RNAs using bi-random walk. PMID:30453964
Transcriptome Analysis of Long Non-Coding RNA in the Bovine Mammary Gland Following Dietary Supplementation with Linseed Oil and Safflower Oil. PMID:30445766
Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing. PMID:30397543
Defining Essentiality Score of Protein-Coding Genes and Long Noncoding RNAs. PMID:30356729
ZFLNC: a comprehensive and well-annotated database for zebrafish lncRNA. PMID:30335154
Analysis of impact metrics for the Protein Data Bank. PMID:30325351
Accurate prediction of protein-lncRNA interactions by diffusion and HeteSim features across heterogeneous network. PMID:30309340
EZH2 RIP-seq Identifies Tissue-specific Long Non-coding RNAs. PMID:30295189
POSTAR2: deciphering the post-transcriptional regulatory logics. PMID:30239819
Dataset for regulation between lncRNAs and their nearby protein-coding genes in human cancers. PMID:30229065
Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease. PMID:30224808
Regional Differences in mRNA and lncRNA Expression Profiles in Non-Failing Human Atria and Ventricles. PMID:30224797
Noncoding RNAs in Cardiac Hypertrophy. PMID:30171598
Non-Coding Transcriptome Maps across Twenty Tissues of the Korean Black Chicken, Yeonsan Ogye. PMID:30103450
Computational resources associating diseases with genotypes, phenotypes and exposures. PMID:30102366
Role of Pseudogenes in Tumorigenesis. PMID:30071685
HDncRNA: a comprehensive database of non-coding RNAs associated with heart diseases. PMID:30053237
Inference of Crosstalk Effects between DNA Methylation and lncRNA Regulation in NSCLC. PMID:30035125
The emergence of long non-coding RNAs in hepatocellular carcinoma: an update. PMID:30026854
Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye. PMID:30010758
The oncogenic potentials and diagnostic significance of long non-coding RNA LINC00310 in breast cancer. PMID:29993199
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Platforms for Investigating LncRNA Functions. PMID:29945466
Non-coding RNAs in lipid metabolism. PMID:29929012
Regulatory variants: from detection to predicting impact. PMID:29893792
BASiNET-BiologicAl Sequences NETwork: a case study on coding and non-coding RNAs identification. PMID:29873784
Long Non-coding RNAs in Endothelial Biology. PMID:29867565
Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis. PMID:29860520
Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish. PMID:29764394
The use of long non-coding RNAs as prognostic biomarkers and therapeutic targets in prostate cancer. PMID:29755696
Prediction of plant lncRNA by ensemble machine learning classifiers. PMID:29720103
De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts. PMID:29707046
Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome. PMID:29690875
Characterization of Human Salivary Extracellular RNA by Next-generation Sequencing. PMID:29685897
Rare Splice Variants in Long Non-Coding RNAs. PMID:29657294
Present Scenario of Long Non-Coding RNAs in Plants. PMID:29657289
Characterization of lncRNAs involved in cold acclimation of zebrafish ZF4 cells. PMID:29634734
Competitive endogenous RNA networks: integrated analysis of non-coding RNA and mRNA expression profiles in infantile hemangioma. PMID:29552284
Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci. PMID:29540241
Integration of lncRNA and mRNA Transcriptome Analyses Reveals Genes and Pathways Potentially Involved in Calf Intestinal Growth and Development during the Early Weeks of Life. PMID:29510583
Transcriptional regulation of macrophage cholesterol efflux and atherogenesis by a long noncoding RNA. PMID:29431742
Comprehensive Characterization of the RNA Editomes in Cancer Development and Progression. PMID:29387082
Lnc2Catlas: an atlas of long noncoding RNAs associated with risk of cancers. PMID:29382910
Functional Classification and Experimental Dissection of Long Noncoding RNAs. PMID:29373828
Scuba: scalable kernel-based gene prioritization. PMID:29370760
Linc-RAM is required for FGF2 function in regulating myogenic cell differentiation. PMID:29364044
Identification of novel diagnostic biomarkers for thyroid carcinoma. PMID:29340074
Advances of Long Noncoding RNAs-mediated Regulation in Reproduction. PMID:29336373
Statistical analysis of non-coding RNA data. PMID:29306017
Transcription Factor and lncRNA Regulatory Networks Identify Key Elements in Lung Adenocarcinoma. PMID:29303984
Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function. PMID:29301847
Natural Antisense Transcripts: Molecular Mechanisms and Implications in Breast Cancers. PMID:29301303
Identification and characterization of conserved lncRNAs in human and rat brain. PMID:29297275
DLREFD: a database providing associations of long non-coding RNAs, environmental factors and phenotypes. PMID:29220470
NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations. PMID:29220444
circlncRNAnet: an integrated web-based resource for mapping functional networks of long or circular forms of noncoding RNAs. PMID:29194536
Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs. PMID:29165713
Genome-wide identification of long non-coding RNA genes and their association with insecticide resistance and metamorphosis in diamondback moth, Plutella xylostella. PMID:29158595
NONCODEV5: a comprehensive annotation database for long non-coding RNAs. PMID:29140524
Functional annotation of structural ncRNAs within enhancer RNAs in the human genome: implications for human disease. PMID:29138457
Mechanisms of Long Non-Coding RNAs in the Assembly and Plasticity of Neural Circuitry. PMID:29109677
Chromosome preference of disease genes and vectorization for the prediction of non-coding disease genes. PMID:29108274
High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing. PMID:29106417
LOC285629 regulates cell proliferation and motility in colorectal cancer cells. PMID:29098557
lncRNASNP2: an updated database of functional SNPs and mutations in human and mouse lncRNAs. PMID:29077939
Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease. PMID:29069510
Constructing prediction models from expression profiles for large scale lncRNA-miRNA interaction profiling. PMID:29069317
Systematic Identification and Molecular Characteristics of Long Noncoding RNAs in Pig Tissues. PMID:29062838
Non-coding RNAs and Their Roles in Stress Response in Plants. PMID:29017967
EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments. PMID:28985416
Plant small RNAs: the essential epigenetic regulators of gene expression for salt-stress responses and tolerance. PMID:28951953
Whole Transcriptome Profiling: An RNA-Seq Primer and Implications for Pharmacogenomics Research. PMID:28945944
The Function and Therapeutic Potential of Long Non-coding RNAs in Cardiovascular Development and Disease. PMID:28918050
Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs. PMID:28911107
RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats. PMID:28878329
Systematic analysis of transcription start sites in avian development. PMID:28873399
Noncoding RNAs in neurodegeneration. PMID:28855739
Short and Long Noncoding RNAs Regulate the Epigenetic Status of Cells. PMID:28847161
De novo transcriptome assembly for the spiny mouse (Acomys cahirinus). PMID:28827620
Long Noncoding RNAs in Plants. PMID:28815539
The non-coding RNA landscape of human hematopoiesis and leukemia. PMID:28794406
Annotation and cluster analysis of spatiotemporal- and sex-related lncRNA expression in rhesus macaque brain. PMID:28687705
Long Noncoding RNAs as Biomarkers in Cancer. PMID:28634418
Transcriptomics technologies. PMID:28545146
DDX11-AS1 as potential therapy targets for human hepatocellular carcinoma. PMID:28496001
Single-cell topological RNA-seq analysis reveals insights into cellular differentiation and development. PMID:28459448
A class of circadian long non-coding RNAs mark enhancers modulating long-range circadian gene regulation. PMID:28335007
Comprehensive analysis of long non-coding RNAs highlights their spatio-temporal expression patterns and evolutional conservation in Sus scrofa. PMID:28233874
Identification and evolutionary analysis of long non-coding RNAs in zebra finch. PMID:28143393
The Long Noncoding RNA Landscape of the Ischemic Human Left Ventricle. PMID:28115490
Gene co-expression analysis for functional classification and gene-disease predictions. PMID:28077403
Long noncoding RNA repertoire in chicken liver and adipose tissue. PMID:28073357
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome. PMID:28053114
Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination. PMID:28042575
A comprehensive benchmark of RNA-RNA interaction prediction tools for all domains of life. PMID:27993777
Improved method for prioritization of disease associated lncRNAs based on ceRNA theory and functional genomics data. PMID:27992375
PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs). PMID:27936097
Expression profiling and functional annotation of noncoding genes across 11 distinct organs in rat development. PMID:27934932
FARNA: knowledgebase of inferred functions of non-coding RNA transcripts. PMID:27924038
The BIG Data Center: from deposition to integration to translation. PMID:27899658
NSDNA: a manually curated database of experimentally supported ncRNAs associated with nervous system diseases. PMID:27899613
cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs. PMID:27895807
A lncRNA Perspective into (Re)Building the Heart. PMID:27882316
Long Non-Coding RNAs: A Novel Paradigm for Toxicology. PMID:27864543
Insights into long noncoding RNAs of naked mole rat (Heterocephalus glaber) and their potential association with cancer resistance. PMID:27833660
RNAcentral: a comprehensive database of non-coding RNA sequences. PMID:27794554
Mining, Validation, and Clinical Significance of Colorectal Cancer (CRC)-Associated lncRNAs. PMID:27788162
The state of play in higher eukaryote gene annotation. PMID:27773922
Genome-Wide Anaplasma phagocytophilum AnkA-DNA Interactions Are Enriched in Intergenic Regions and Gene Promoters and Correlate with Infection-Induced Differential Gene Expression. PMID:27703927
Regulation of PCGEM1 by p54/nrb in prostate cancer. PMID:27682980
LNCediting: a database for functional effects of RNA editing in lncRNAs. PMID:27651464
A critical overview of long non-coding RNA in glioma etiology 2016: an update. PMID:27629290
Comprehensive Transcriptome Analyses of the Fructose-Fed Syrian Golden Hamster Liver Provides Novel Insights into Lipid Metabolism. PMID:27589064
ANGIOGENES: knowledge database for protein-coding and noncoding RNA genes in endothelial cells. PMID:27582018
A new avenue for obtaining insight into the functional characteristics of long noncoding RNAs associated with estrogen receptor signaling. PMID:27539025
MYOSLID Is a Novel Serum Response Factor-Dependent Long Noncoding RNA That Amplifies the Vascular Smooth Muscle Differentiation Program. PMID:27444199
Long Noncoding RNA and mRNA Expression Profiles in the Thyroid Gland of Two Phenotypically Extreme Pig Breeds Using Ribo-Zero RNA Sequencing. PMID:27409639
Long non-coding RNAs and complex diseases: from experimental results to computational models. PMID:27345524
IntNetLncSim: an integrative network analysis method to infer human lncRNA functional similarity. PMID:27323856
Long non-coding RNA: Functional agent for disease traits. PMID:27229269
The lncRNA SLNCR1 Mediates Melanoma Invasion through a Conserved SRA1-like Region. PMID:27210747
Long non-coding RNA Databases in Cardiovascular Research. PMID:27049585
Long non-coding RNAs as prognostic markers in human breast cancer. PMID:26942882
Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas. PMID:26902283
NONCODEV5: a comprehensive annotation database for long non-coding RNAs PubMed citations: 205.

205 articles citing: NONCODEV5: a comprehensive annotation database for long non-coding RNAs

Non-Coding RNAs: New Dawn for Diabetes Mellitus Induced Erectile Dysfunction. PMID:35813828
Whole Transcriptome Sequencing of Peripheral Blood Shows That Immunity/GnRH/PI3K-Akt Pathways Are Associated With Opioid Use Disorder. PMID:35800019
Decoding microRNA drivers in atherosclerosis. PMID:35758143
TACOS: a novel approach for accurate prediction of cell-specific long noncoding RNAs subcellular localization. PMID:35753698
Drosophila Relish Activating lncRNA-CR33942 Transcription Facilitates Antimicrobial Peptide Expression in Imd Innate Immune Response. PMID:35720331
De Novo Large Deletion Leading to Fragile X Syndrome. PMID:35646065
An update on the functional roles of long non‑coding RNAs in ischemic injury (Review). PMID:35593308
Revealing the novel complexity of plant long non-coding RNA by strand-specific and whole transcriptome sequencing for evolutionarily representative plant species. PMID:35590257
Skin-Expressing lncRNAs in Inflammatory Responses. PMID:35559048
Long Non Coding RNA Based Regulation of Cerebrovascular Endothelium. PMID:35495157
The Roles of Noncoding RNAs in Systemic Sclerosis. PMID:35464474
An Unanticipated Modulation of Cyclin-Dependent Kinase Inhibitors: The Role of Long Non-Coding RNAs. PMID:35456025
lincRNA-Cox2 Functions to Regulate Inflammation in Alveolar Macrophages during Acute Lung Injury. PMID:35365562
The expression discrepancy and characteristics of long non-coding RNAs in peripheral blood leukocytes from amyotrophic lateral sclerosis patients. PMID:35364800
Potential Roles of Long Noncoding RNAs as Therapeutic Targets in Organ Transplantation. PMID:35359941
Biomarkers in Human Peripheral Blood Mononuclear Cells: The State of the Art in Amyotrophic Lateral Sclerosis. PMID:35269723
Exosomal RNAs: Novel Potential Biomarkers for Diseases-A Review. PMID:35269604
LncRNA RP5-998N21.4 promotes immune defense through upregulation of IFIT2 and IFIT3 in schizophrenia. PMID:35232977
DeepWalk based method to predict lncRNA-miRNA associations via lncRNA-miRNA-disease-protein-drug graph. PMID:35216549
Significant modulations of linc001128 and linc0938 with miR-24-3p and miR-30c-5p in Parkinson disease. PMID:35173238
Mechanisms of lncRNA biogenesis as revealed by nascent transcriptomics. PMID:35079163
Exosome microRNAs in Metabolic Syndrome as Tools for the Early Monitoring of Diabetes and Possible Therapeutic Options. PMID:34959658
Bioinformatics Analysis of Long Non-coding RNA and Related Diseases: An Overview. PMID:34956340
Long Non-Coding RNAs, Novel Offenders or Guardians in Multiple Sclerosis: A Scoping Review. PMID:34950142
RNA editing regulates lncRNA splicing in human early embryo development. PMID:34851956
A Concise Review on the Role of CircPVT1 in Tumorigenesis, Drug Sensitivity, and Cancer Prognosis. PMID:34804965
Cell type identification from single-cell transcriptomes in melanoma. PMID:34784909
Aberrant Post-Transcriptional Regulation of Protein Expression in the Development of Chronic Obstructive Pulmonary Disease. PMID:34769392
The Role of Long Non-coding RNAs in Human Imprinting Disorders: Prospective Therapeutic Targets. PMID:34760887
Current and Future Perspectives of Noncoding RNAs in Brain Function and Neuropsychiatric Disease. PMID:34742545
Long Non-Coding RNA Regulation of Epigenetics in Vascular Cells. PMID:34698214
Nucleic Acids as Novel Therapeutic Modalities to Address Multiple Sclerosis Onset and Progression. PMID:34694513
Single-cell transcriptomic landscape of human blood cells. PMID:34691592
(In)Distinctive Role of Long Non-Coding RNAs in Common and Rare Ovarian Cancers. PMID:34680193
Data integration and evolutionary analysis of long non-coding RNAs in 25 flowering plants. PMID:34649506
Discovery of alternatively spliced isoforms and long non-coding RNA in full length brain transcriptomes of anadromous Hilsa shad, Tenualosa ilisha (Hamilton, 1822). PMID:34643921
miRNATissueAtlas2: an update to the human miRNA tissue atlas. PMID:34570238
Designing libraries for pooled CRISPR functional screens of long noncoding RNAs. PMID:34533605
Epigenetic Regulation of the Vascular Endothelium by Angiogenic LncRNAs. PMID:34512715
lncExplore: a database of pan-cancer analysis and systematic functional annotation for lncRNAs from RNA-sequencing data. PMID:34464437
Advances with Long Non-Coding RNAs in Alzheimer's Disease as Peripheral Biomarker. PMID:34440298
Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review. PMID:34439912
Illuminating lncRNA Function Through Target Prediction. PMID:34417758
Purification and Structural Characterization of the Long Noncoding RNAs. PMID:34417746
Web tools to perform long non-coding RNAs analysis in oncology research. PMID:34296748
Identification and expression analysis of lncRNA in seven organs of Rhinopithecus roxellana. PMID:34291340
Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity. PMID:34284134
Long Non-coding RNAs: Mechanisms, Experimental, and Computational Approaches in Identification, Characterization, and Their Biomarker Potential in Cancer. PMID:34276764
Emerging roles of exosomal miRNAs in diabetes mellitus. PMID:34185424
LncRNAs and Available Databases. PMID:34160796
Regulatory Mechanisms and Functional Roles of Hypoxia-Induced Long Non-Coding RNA MTORT1 in Breast Cancer Cells. PMID:34141617
The pleiotropic roles of circular and long noncoding RNAs in cutaneous melanoma. PMID:34080276
Multi-Omic Meta-Analysis of Transcriptomes and the Bibliome Uncovers Novel Hypoxia-Inducible Genes. PMID:34065451
SPMLMI: predicting lncRNA-miRNA interactions in humans using a structural perturbation method. PMID:34055486
Interplay between miRNAs and lncRNAs: Mode of action and biological roles in plant development and stress adaptation. PMID:34025943
Genome-wide long non-coding RNA association study on Han Chinese women identifies lncHSAT164 as a novel susceptibility gene for breast cancer. PMID:34018994
Identification of Long Non-coding RNA Isolated From Naturally Infected Macrophages and Associated With Bovine Johne's Disease in Canadian Holstein Using a Combination of Neural Networks and Logistic Regression. PMID:33969037
Intergenic RNA mainly derives from nascent transcripts of known genes. PMID:33952325
lncRNA PVT1 in the Pathogenesis and Clinical Management of Renal Cell Carcinoma. PMID:33947142
The effect of cell isolation methods on the human transcriptome profiling and microbial transcripts of peripheral blood. PMID:33929647
Long Intergenic Non-Coding RNAs in the Mammary Parenchyma and Fat Pad of Pre-Weaning Heifer Calves: Identification and Functional Analysis. PMID:33924848
lncRNA HAR1B has potential to be a predictive marker for pazopanib therapy in patients with sarcoma. PMID:33907565
Computational Methods and Online Resources for Identification of piRNA-Related Molecules. PMID:33886096
Transcriptomic analysis to infer key molecular players involved during host response to NDV challenge in Gallus gallus (Leghorn & Fayoumi). PMID:33875770
Genome-wide analysis of lncRNA stability in human. PMID:33861746
Functional annotation of lncRNA in high-throughput screening. PMID:33835127
Dysregulations of long non-coding RNAs - The emerging "lnc" in environmental carcinogenesis. PMID:33823237
Non-Coding RNA Signatures of B-Cell Acute Lymphoblastic Leukemia. PMID:33799946
Pathogenesis and prospects for therapeutic clinical application of noncoding RNAs in glaucoma: Systematic perspectives. PMID:33634475
Systematic and computational identification of Androctonus crassicauda long non-coding RNAs. PMID:33633149
Associating divergent lncRNAs with target genes by integrating genome sequence, gene expression and chromatin accessibility data. PMID:33575579
Impact of storage conditions on peripheral leukocytes transcriptome. PMID:33565022
Role of Transposable Elements in Gene Regulation in the Human Genome. PMID:33557056
Identification of Potential Prognostic Competing Triplets in High-Grade Serous Ovarian Cancer. PMID:33519912
Functional lncRNA-miRNA-mRNA Networks in Response to Baicalein Treatment in Hepatocellular Carcinoma. PMID:33511213
Epigenetic and non-coding regulation of alcohol abuse and addiction. PMID:33461665
DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms. PMID:33461501
Long non-coding RNA review and implications in acute lung inflammation. PMID:33454366
The Functions and Unique Features of LncRNAs in Cancer Development and Tumorigenesis. PMID:33435206
Mutual dependency between lncRNA LETN and protein NPM1 in controlling the nucleolar structure and functions sustaining cell proliferation. PMID:33432115
A chromatin-associated splicing isoform of OIP5-AS1 acts in cis to regulate the OIP5 oncogene. PMID:33404283
LPI-SKF: Predicting lncRNA-Protein Interactions Using Similarity Kernel Fusions. PMID:33362868
Gene regulation by long non-coding RNAs and its biological functions. PMID:33353982
Disease-Causing Mutations and Rearrangements in Long Non-coding RNA Gene Loci. PMID:33329688
Annotation of Full-Length Long Noncoding RNAs with Capture Long-Read Sequencing (CLS). PMID:33326074
AnnoLnc: A One-Stop Portal to Systematically Annotate Novel Human Long Noncoding RNAs. PMID:33326073
Discoveries for Long Non-Coding RNA Dynamics in Traumatic Brain Injury. PMID:33321920
Identification and Expression Analysis of Long Non-coding RNA in Large Yellow Croaker (Larimichthys crocea) in Response to Cryptocaryon irritans Infection. PMID:33281881
GENCODE 2021. PMID:33270111
HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine. PMID:33264402
An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues. PMID:33235280
EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. PMID:33221906
LincSNP 3.0: an updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements. PMID:33219661
Single cell characterization of B-lymphoid differentiation and leukemic cell states during chemotherapy in ETV6-RUNX1-positive pediatric leukemia identifies drug-targetable transcription factor activities. PMID:33218352
Transcriptome Analysis Identifies SenZfp536, a Sense LncRNA that Suppresses Self-renewal of Cortical Neural Progenitors. PMID:33196962
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. PMID:33196801
Dense sampling of bird diversity increases power of comparative genomics. PMID:33177665
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. PMID:33175170
Genome-wide analysis of long non-coding RNAs responsive to multiple nutrient stresses in Arabidopsis thaliana. PMID:33130916
Long non-coding RNAs (lncRNAs) in spermatogenesis and male infertility. PMID:33126901
LncRBase V.2: an updated resource for multispecies lncRNAs and ClinicLSNP hosting genetic variants in lncRNAs for cancer patients. PMID:33112702
LncRNAs in adaptive immunity: role in physiological and pathological conditions. PMID:33094664
PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs. PMID:33079992
LncExpDB: an expression database of human long non-coding RNAs. PMID:33045751
LncSEA: a platform for long non-coding RNA related sets and enrichment analysis. PMID:33045741
The regulatory roles of long noncoding RNAs in osteoporosis. PMID:33042467
lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA. PMID:33020484
The Interplay between Long Noncoding RNAs and Proteins of the Epigenetic Machinery in Ovarian Cancer. PMID:32967233
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing. PMID:32962098
One locus with two roles: microRNA-independent functions of microRNA-host-gene locus-encoded long noncoding RNAs. PMID:32945142
Promising targets and drugs in rheumatoid arthritis: a module-based and cumulatively scoring approach. PMID:32922758
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
A novel antiviral lncRNA, EDAL, shields a T309 O-GlcNAcylation site to promote EZH2 lysosomal degradation. PMID:32873321
Microarray analysis of long non-coding RNA expression profiles in Marfan syndrome. PMID:32855713
Exploring the Regulatory Potential of Long Non-Coding RNA in Feed Efficiency of Indicine Cattle. PMID:32854445
PreLnc: An Accurate Tool for Predicting lncRNAs Based on Multiple Features. PMID:32842486
Non-coding RNAs: emerging players in cardiomyocyte proliferation and cardiac regeneration. PMID:32748089
Analysis of long non-coding RNA expression profiles in high-glucose treated vascular endothelial cells. PMID:32689997
Competing Endogenous RNAs, Non-Coding RNAs and Diseases: An Intertwined Story. PMID:32605220
The Roles of Long Noncoding RNAs HNF1α-AS1 and HNF4α-AS1 in Drug Metabolism and Human Diseases. PMID:32599764
Non-coding RNAs in neuropathic pain. PMID:32587755
Non-Coding RNAs in Cancer Radiosensitivity: MicroRNAs and lncRNAs as Regulators of Radiation-Induced Signaling Pathways. PMID:32585857
Computational Methods and Applications for Identifying Disease-Associated lncRNAs as Potential Biomarkers and Therapeutic Targets. PMID:32585624
Learning Representations to Predict Intermolecular Interactions on Large-Scale Heterogeneous Molecular Association Network. PMID:32580123
Bioentity2vec: Attribute- and behavior-driven representation for predicting multi-type relationships between bioentities. PMID:32533701
GC-AG Introns Features in Long Non-coding and Protein-Coding Genes Suggest Their Role in Gene Expression Regulation. PMID:32499820
AnnoLnc2: the one-stop portal to systematically annotate novel lncRNAs for human and mouse. PMID:32406920
Psychiatric Disorders and lncRNAs: A Synaptic Match. PMID:32344798
RNA-Binding Proteins as Important Regulators of Long Non-Coding RNAs in Cancer. PMID:32340118
The Challenges and Opportunities of LncRNAs in Ovarian Cancer Research and Clinical Use. PMID:32326249
Linear and circular PVT1 in hematological malignancies and immune response: two faces of the same coin. PMID:32228602
LncRNAs in HCV Infection and HCV-Related Liver Disease. PMID:32214045
Transcriptomic analysis of long noncoding RNAs and mRNAs expression profiles in the spinal cord of bone cancer pain rats. PMID:32209134
Long Non-coding RNAs Mechanisms of Action in HIV-1 Modulation and the Identification of Novel Therapeutic Targets. PMID:32183241
A learning based framework for diverse biomolecule relationship prediction in molecular association network. PMID:32170157
Inferring lncRNA Functional Similarity Based on Integrating Heterogeneous Network Data. PMID:32117916
Reviewing the Limitations of Adult Mammalian Cardiac Regeneration: Noncoding RNAs as Regulators of Cardiomyogenesis. PMID:32050588
LncRNA-AC006129.1 reactivates a SOCS3-mediated anti-inflammatory response through DNA methylation-mediated CIC downregulation in schizophrenia. PMID:32015466
The Emerging Role of Noncoding RNAs in Pediatric Inflammatory Bowel Disease. PMID:32009179
Transcriptomic and open chromatin atlas of high-resolution anatomical regions in the rhesus macaque brain. PMID:31980617
Phenotype-genotype network construction and characterization: a case study of cardiovascular diseases and associated non-coding RNAs. PMID:31942979
Targeting the Oncogenic Long Non-coding RNA SLNCR1 by Blocking Its Sequence-Specific Binding to the Androgen Receptor. PMID:31940495
Integrative Construction and Analysis of Molecular Association Network in Human Cells by Fusing Node Attribute and Behavior Information. PMID:31923739
Identification of a novel anthocyanin synthesis pathway in the fungus Aspergillus sydowii H-1. PMID:31914922
Integrated analysis of directly captured microRNA targets reveals the impact of microRNAs on mammalian transcriptome. PMID:31900330
LncRNA-miRNA interaction prediction through sequence-derived linear neighborhood propagation method with information combination. PMID:31856716
Projection-Based Neighborhood Non-Negative Matrix Factorization for lncRNA-Protein Interaction Prediction. PMID:31824563
Whole Transcriptome Analysis of Obese Adipose Tissue Suggests u001kfc.1 as a Potential Regulator to Glucose Homeostasis. PMID:31824561
Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples. PMID:31808800
Cardioinformatics: the nexus of bioinformatics and precision cardiology. PMID:31802103
Integrating the Ribonucleic Acid Sequencing Data From Various Studies for Exploring the Multiple Sclerosis-Related Long Noncoding Ribonucleic Acids and Their Functions. PMID:31781177
Characterization of Hepatocellular Carcinoma Cell Lines Using a Fractionation-Then-Sequencing Approach Reveals Nuclear-Enriched HCC-Associated lncRNAs. PMID:31781161
Long noncoding RNAs in lipid metabolism: literature review and conservation analysis across species. PMID:31752679
The Regulatory Roles of Non-coding RNAs in Angiogenesis and Neovascularization From an Epigenetic Perspective. PMID:31709179
Database Resources of the National Genomics Data Center in 2020. PMID:31702008
Genome-wide expression profiling in colorectal cancer focusing on lncRNAs in the adenoma-carcinoma transition. PMID:31694571
Enhancer LncRNAs Influence Chromatin Interactions in Different Ways. PMID:31681405
NPInter v4.0: an integrated database of ncRNA interactions. PMID:31670377
ncRNA2MetS: a manually curated database for non-coding RNAs associated with metabolic syndrome. PMID:31637139
Novel Y-Chromosome Long Non-Coding RNAs Expressed in Human Male CNS During Early Development. PMID:31608120
A comprehensive method protocol for annotation and integrated functional understanding of lncRNAs. PMID:31578571
Evolution of a reverse transcriptase to map N1-methyladenosine in human messenger RNA. PMID:31548705
The how and why of lncRNA function: An innate immune perspective. PMID:31487549
Long Noncoding Transcriptome in Chronic Obstructive Pulmonary Disease. PMID:31486667
The role of long non-coding RNAs in cardiac development and disease. PMID:31435517
Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe. PMID:31426739
LncRNA expression profile during autophagy and Malat1 function in macrophages. PMID:31425535
The nuclear hypoxia-regulated NLUCAT1 long non-coding RNA contributes to an aggressive phenotype in lung adenocarcinoma through regulation of oxidative stress. PMID:31417181
Construction and Comprehensive Analysis of a Molecular Association Network via lncRNA-miRNA -Disease-Drug-Protein Graph. PMID:31405040
A Noninvasive Prediction Nomogram for Lymph Node Metastasis of Hepatocellular Carcinoma Based on Serum Long Noncoding RNAs. PMID:31355249
Predicting functional long non-coding RNAs validated by low throughput experiments. PMID:31345106
lncRNA expression predicts mRNA abundance. PMID:31339345
Systematic identification of intergenic long-noncoding RNAs in mouse retinas using full-length isoform sequencing. PMID:31286854
Stability of an RNA•DNA-DNA triple helix depends on base triplet composition and length of the RNA third strand. PMID:31265072
Molecular Traits of Long Non-protein Coding RNAs from Diverse Plant Species Show Little Evidence of Phylogenetic Relationships. PMID:31235560
RNA-protein interactions: disorder, moonlighting and junk contribute to eukaryotic complexity. PMID:31213136
Phytochemicals as Modulators of Long Non-Coding RNAs and Inhibitors of Cancer-Related Carbonic Anhydrases. PMID:31208095
AMBRA1-mediated autophagy and apoptosis associated with an epithelial-mesenchymal transition in the development of cleft palate induced by all-trans retinoic acid. PMID:31157249
CNIT: a fast and accurate web tool for identifying protein-coding and long non-coding transcripts based on intrinsic sequence composition. PMID:31147700
Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate. PMID:31039751
Long noncoding RNAs: a missing link in osteoporosis. PMID:30937214
RNA-sequencing in ophthalmology research: considerations for experimental design and analysis. PMID:30911735
Multi-Omics Approaches to Study Long Non-coding RNA Function in Atherosclerosis. PMID:30838214
Upregulation of lncRNA NR_046683 Serves as a Prognostic Biomarker and Potential Drug Target for Multiple Myeloma. PMID:30766487
Multiple Partial Regularized Nonnegative Matrix Factorization for Predicting Ontological Functions of lncRNAs. PMID:30728826
Invited Review: Long non-coding RNAs: important regulators in the development, function and disorders of the central nervous system. PMID:30636336
Genome-wide methods for investigating long noncoding RNAs. PMID:30594777
Different effects of long noncoding RNA NDRG1-OT1 fragments on NDRG1 transcription in breast cancer cells under hypoxia. PMID:30497328
Long non-coding RNAs in hematological malignancies: translating basic techniques into diagnostic and therapeutic strategies. PMID:30466456
Coordinate regulation of long non-coding RNAs and protein-coding genes in germ-free mice. PMID:30463508
Transcriptional Profiling of Hypoxia-Regulated Non-coding RNAs in Human Primary Endothelial Cells. PMID:30456215
LncRNA2Target v2.0: a comprehensive database for target genes of lncRNAs in human and mouse. PMID:30380072
LNCipedia 5: towards a reference set of human long non-coding RNAs. PMID:30371849
LncBook: a curated knowledgebase of human long non-coding RNAs. PMID:30329098
CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs. PMID:30285246
lncRNA GCAWKR Promotes Gastric Cancer Development by Scaffolding the Chromatin Modification Factors WDR5 and KAT2A. PMID:30274785
MEG8 long noncoding RNA contributes to epigenetic progression of the epithelial-mesenchymal transition of lung and pancreatic cancer cells. PMID:30262664
Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species. PMID:30227846
BC200 (BCYRN1) - The shortest, long, non-coding RNA associated with cancer. PMID:30175286
Exploring Long Noncoding RNAs in Glioblastoma: Regulatory Mechanisms and Clinical Potentials. PMID:30116729
The State of Long Non-Coding RNA Biology. PMID:30103474
Differential Expression of Coding and Long Noncoding RNAs in Keratoconus-Affected Corneas. PMID:29860458
Functional Role of Non-Coding RNAs during Epithelial-To-Mesenchymal Transition. PMID:29843425
Towards a complete map of the human long non-coding RNA transcriptome. PMID:29795125
Long Non-Coding RNAs in Multiple Myeloma. PMID:29389884
NONCODE v3.0: integrative annotation of long noncoding RNAs PubMed citations: 179.

179 articles citing: NONCODE v3.0: integrative annotation of long noncoding RNAs

Fusion of KATZ measure and space projection to fast probe potential lncRNA-disease associations in bipartite graphs. PMID:34807960
LINC00857 promotes colorectal cancer progression by sponging miR-150-5p and upregulating HMGB3 (high mobility group box 3) expression. PMID:34753396
Introduction to Bioinformatics Resources for Post-transcriptional Regulation of Gene Expression. PMID:34694601
Non-Coding Variants in Cancer: Mechanistic Insights and Clinical Potential for Personalized Medicine. PMID:34449663
Long non-coding RNA USP30-AS1 aggravates the malignant progression of cervical cancer by sequestering microRNA-299-3p and thereby overexpressing PTP4A1. PMID:33986866
IPCARF: improving lncRNA-disease association prediction using incremental principal component analysis feature selection and a random forest classifier. PMID:33794766
Unveiling the long non-coding RNA profile of porcine reproductive and respiratory syndrome virus-infected porcine alveolar macrophages. PMID:33711920
Comparative mRNA and LncRNA Analysis of the Molecular Mechanisms Associated With Low Silk Production in Bombyx mori. PMID:33552120
A novel computational model for predicting potential LncRNA-disease associations based on both direct and indirect features of LncRNA-disease pairs. PMID:33267800
EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. PMID:33221906
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. PMID:33196801
Expression profiles of long non-coding RNAs during fetal lung development. PMID:33093882
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
Computational Identification of piRNAs Using Features Based on RNA Sequence, Structure, Thermodynamic and Physicochemical Properties. PMID:32655289
Exosomal Long Non-Coding RNAs in Lung Diseases. PMID:32438606
Genome-wide identification of Arabidopsis long noncoding RNAs in response to the blue light. PMID:32277122
LncRNA LINC00588 Suppresses the Progression of Osteosarcoma by Acting as a ceRNA for miRNA-1972. PMID:32265694
Genome-Wide Analysis and Function Prediction of Long Noncoding RNAs in Sheep Pituitary Gland Associated with Sexual Maturation. PMID:32192168
NCResNet: Noncoding Ribonucleic Acid Prediction Based on a Deep Resident Network of Ribonucleic Acid Sequences. PMID:32180792
Exosomes Transmit Viral Genetic Information and Immune Signals may cause Immunosuppression and Immune Tolerance in ALV-J Infected HD11 cells. PMID:32140061
2lpiRNApred: a two-layered integrated algorithm for identifying piRNAs and their functions based on LFE-GM feature selection. PMID:32138598
Long noncoding RNAs: new insights in modulating mammalian spermatogenesis. PMID:32128162
LDAI-ISPS: LncRNA-Disease Associations Inference Based on Integrated Space Projection Scores. PMID:32098405
Non-Coding RNAs as Regulators and Markers for Targeting of Breast Cancer and Cancer Stem Cells. PMID:32033146
A Long Non-coding RNA Lnc712 Regulates Breast Cancer Cell Proliferation. PMID:31892853
A novel target convergence set based random walk with restart for prediction of potential LncRNA-disease associations. PMID:31795943
Differentiation of Long Non-Coding RNA and mRNA Expression Profiles in Male and Female Aedes albopictus. PMID:31681418
CL-PMI: A Precursor MicroRNA Identification Method Based on Convolutional and Long Short-Term Memory Networks. PMID:31681416
Water-deficit responsive microRNAs in the primary root growth zone of maize. PMID:31651253
LNRLMI: Linear neighbour representation for predicting lncRNA-miRNA interactions. PMID:31568653
Predicting lncRNA-miRNA Interaction via Graph Convolution Auto-Encoder. PMID:31555320
Identification and Temporal Expression Analysis of Conserved and Novel MicroRNAs in the Leaves of Winter Wheat Grown in the Field. PMID:31552091
Long Noncoding Transcriptome in Chronic Obstructive Pulmonary Disease. PMID:31486667
Integration analysis for novel lncRNA markers predicting tumor recurrence in human colon adenocarcinoma. PMID:31470869
Unique trophoblast chromatin environment mediated by the PcG protein SFMBT2. PMID:31391163
An expanded landscape of human long noncoding RNA. PMID:31350901
lncRNA MALAT1 Accelerates Wound Healing of Diabetic Mice Transfused with Modified Autologous Blood via the HIF-1α Signaling Pathway. PMID:31344658
Identifying microRNAs and Their Editing Sites in Macaca mulatta. PMID:31284505
Genome-wide identification and characterization of long non-coding RNAs expressed during sheep fetal and postnatal hair follicle development. PMID:31186438
Analysis of microRNAs, phased small interfering RNAs and their potential targets in Rosarugosa Thunb. PMID:30999850
Prediction of Long Non-Coding RNAs Based on Deep Learning. PMID:30987229
Integrative system genetic analysis reveals mRNA-lncRNA network associated with mouse spontaneous lung cancer susceptibility. PMID:30719228
Novel link prediction for large-scale miRNA-lncRNA interaction network in a bipartite graph. PMID:30598112
Single-molecule long-read sequencing facilitates shrimp transcriptome research. PMID:30446694
Transcriptome Analysis of Long Non-Coding RNA in the Bovine Mammary Gland Following Dietary Supplementation with Linseed Oil and Safflower Oil. PMID:30445766
Expression profiling of lncRNAs and mRNAs reveals regulation of muscle growth in the Pacific abalone, Haliotis discus hannai. PMID:30442913
A Novel Approach for Predicting Disease-lncRNA Associations Based on the Distance Correlation Set and Information of the miRNAs. PMID:30046354
The emergence of long non-coding RNAs in hepatocellular carcinoma: an update. PMID:30026854
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish. PMID:29764394
Genome-wide identification and comprehensive analysis of microRNAs and phased small interfering RNAs in watermelon. PMID:29764387
MALAT1: a druggable long non-coding RNA for targeted anti-cancer approaches. PMID:29739426
HLPI-Ensemble: Prediction of human lncRNA-protein interactions based on ensemble strategy. PMID:29583068
An epigenomic approach to identifying differential overlapping and cis-acting lncRNAs in cisplatin-resistant cancer cells. PMID:29436261
Long Noncoding RNA H19 Inhibits Cell Viability, Migration, and Invasion Via Downregulation of IRS-1 in Thyroid Cancer Cells. PMID:29332545
LncRNA Structural Characteristics in Epigenetic Regulation. PMID:29292750
Interplay of neuronal and non-neuronal genes regulates intestinal DAF-16-mediated immune response during Fusarium infection of Caenorhabditis elegans. PMID:29152379
NONCODEV5: a comprehensive annotation database for long non-coding RNAs. PMID:29140524
Structure, target-specificity and expression of PN_LNC_N13, a long non-coding RNA differentially expressed in apomictic and sexual Paspalum notatum. PMID:29119346
Genome-wide discovery of long intergenic noncoding RNAs and their epigenetic signatures in the rat. PMID:29093522
Constructing prediction models from expression profiles for large scale lncRNA-miRNA interaction profiling. PMID:29069317
Global network random walk for predicting potential human lncRNA-disease associations. PMID:28963512
BRWLDA: bi-random walks for predicting lncRNA-disease associations. PMID:28947982
Transcriptome analysis of Callery pear (Pyrus calleryana) reveals a comprehensive signalling network in response to Alternaria alternata. PMID:28934298
Small RNA profiles from Panax notoginseng roots differing in sizes reveal correlation between miR156 abundances and root biomass levels. PMID:28842680
Fine particulate matter 2.5 exerted its toxicological effect by regulating a new layer, long non-coding RNA. PMID:28839203
2L-piRNA: A Two-Layer Ensemble Classifier for Identifying Piwi-Interacting RNAs and Their Function. PMID:28624202
Mining Cancer Transcriptomes: Bioinformatic Tools and the Remaining Challenges. PMID:28229366
Down-Regulation of lncRNA-AK001085 and its Influences on the Diagnosis of Ankylosing Spondylitis. PMID:28042142
Dysregulation of long non-coding RNA profiles in human colorectal cancer and its association with overall survival. PMID:27895773
Long Non-Coding RNAs: A Novel Paradigm for Toxicology. PMID:27864543
Regulation of PCGEM1 by p54/nrb in prostate cancer. PMID:27682980
Transcriptome altered by latent human cytomegalovirus infection on THP-1 cells using RNA-seq. PMID:27623506
A genetic algorithm-based weighted ensemble method for predicting transposon-derived piRNAs. PMID:27578422
Long non-coding RNAs link extracellular matrix gene expression to ischemic cardiomyopathy. PMID:27557636
IRWRLDA: improved random walk with restart for lncRNA-disease association prediction. PMID:27517318
piRNAs and Their Functions in the Brain. PMID:27512315
qiRNApredictor: A Novel Computational Program for the Prediction of qiRNAs in Neurospora crassa. PMID:27428111
Long Non-Coding RNAs (lncRNAs) of Sea Cucumber: Large-Scale Prediction, Expression Profiling, Non-Coding Network Construction, and lncRNA-microRNA-Gene Interaction Analysis of lncRNAs in Apostichopus japonicus and Holothuria glaberrima During LPS Challenge and Radial Organ Complex Regeneration. PMID:27392411
Long non-coding RNAs and complex diseases: from experimental results to computational models. PMID:27345524
FMLNCSIM: fuzzy measure-based lncRNA functional similarity calculation model. PMID:27322210
LncRNApred: Classification of Long Non-Coding RNAs and Protein-Coding Transcripts by the Ensemble Algorithm with a New Hybrid Feature. PMID:27228152
Characterization of piRNAs across postnatal development in mouse brain. PMID:27112104
NPInter v3.0: an upgraded database of noncoding RNA-associated interactions. PMID:27087310
Accurate Prediction of Transposon-Derived piRNAs by Integrating Various Sequential and Physicochemical Features. PMID:27074043
Long non-coding RNA Databases in Cardiovascular Research. PMID:27049585
ILNCSIM: improved lncRNA functional similarity calculation model. PMID:27028993
Altered Long Noncoding RNA Expression Precedes the Course of Parkinson's Disease-a Preliminary Report. PMID:27021022
Long noncoding RNAs in psychiatric disorders. PMID:26974119
Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout. PMID:26895175
LncDisease: a sequence based bioinformatics tool for predicting lncRNA-disease associations. PMID:26887819
Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus). PMID:26785828
Prioritizing and selecting likely novel miRNAs from NGS data. PMID:26635395
deepBase v2.0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data. PMID:26590255
NONCODE 2016: an informative and valuable data source of long non-coding RNAs. PMID:26586799
KATZLDA: KATZ measure for the lncRNA-disease association prediction. PMID:26577439
A Comprehensive MicroRNA Expression Profile Related to Hypoxia Adaptation in the Tibetan Pig. PMID:26571238
Novel insights into a treatment for aplastic anemia based on the advanced proliferation of bone marrow‑derived mesenchymal stem cells induced by fibroblast growth factor 1. PMID:26460236
Predicting lncRNA-disease associations and constructing lncRNA functional similarity network based on the information of miRNA. PMID:26278472
Long noncoding RNA expression profiles in gut tissues constitute molecular signatures that reflect the types of microbes. PMID:26123364
Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma. PMID:26104160
Constructing lncRNA functional similarity network based on lncRNA-disease associations and disease semantic similarity. PMID:26061969
High throughput profiling of the cotton bollworm Helicoverpa armigera immunotranscriptome during the fungal and bacterial infections. PMID:26001831
Long non-coding RNAs and their biological roles in plants. PMID:25936895
Prediction of long noncoding RNA functions with co-expression network in esophageal squamous cell carcinoma. PMID:25885227
BCYRN1, a c-MYC-activated long non-coding RNA, regulates cell metastasis of non-small-cell lung cancer. PMID:25866480
Epigenetic regulation in hepatocellular carcinoma requires long noncoding RNAs. PMID:25861629
Non-coding RNA: a new frontier in regulatory biology. PMID:25821635
Long Noncoding RNA-Directed Epigenetic Regulation of Gene Expression Is Associated With Anxiety-like Behavior in Mice. PMID:25792222
Rsite: a computational method to identify the functional sites of noncoding RNAs. PMID:25776805
Biological databases for human research. PMID:25712261
Prediction of mature microRNA and piwi-interacting RNA without a genome reference or precursors. PMID:25580537
Discovery and annotation of long noncoding RNAs. PMID:25565026
Identification of Stably Expressed lncRNAs as Valid Endogenous Controls for Profiling of Human Glioma. PMID:25561975
Prediction of piRNAs using transposon interaction and a support vector machine. PMID:25547961
Comprehensive reconstruction and visualization of non-coding regulatory networks in human. PMID:25540777
Long non-coding RNA normalisers in human brain tissue. PMID:25528156
Developmental programming of long non-coding RNAs during postnatal liver maturation in mice. PMID:25503252
Epitranscriptional regulation of cardiovascular development and disease. PMID:25433070
From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease. PMID:25426780
An update on LNCipedia: a database for annotated human lncRNA sequences. PMID:25378313
Transcriptomic analysis of the mussel Elliptio complanata identifies candidate stress-response genes and an abundance of novel or noncoding transcripts. PMID:25375103
De novo Assembly and Analysis of the Northern Leopard Frog Rana pipiens Transcriptome. PMID:25371763
lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. PMID:25332394
lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse. PMID:25332392
Databases for lncRNAs: a comparative evaluation of emerging tools. PMID:25323317
ptRNApred: computational identification and classification of post-transcriptional RNA. PMID:25303994
Transcriptome analysis elucidates key developmental components of bryozoan lophophore development. PMID:25300304
New gene models and alternative splicing in the maize pathogen Colletotrichum graminicola revealed by RNA-Seq analysis. PMID:25281481
Identification and functional analysis of long non-coding RNAs in mouse cleavage stage embryonic development based on single cell transcriptome data. PMID:25277336
LncRBase: an enriched resource for lncRNA information. PMID:25233092
Current status of long non-coding RNAs in human cancer with specific focus on colorectal cancer. PMID:25119862
A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers. PMID:25013169
A method for detecting long non-coding RNAs with tiled RNA expression microarrays. PMID:24937006
Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts. PMID:24922324
The transcriptomes of the crucian carp complex (Carassius auratus) provide insights into the distinction between unisexual triploids and sexual diploids. PMID:24871367
A long noncoding RNA critically regulates Bcr-Abl-mediated cellular transformation by acting as a competitive endogenous RNA. PMID:24837367
Identification of non-coding RNAs with a new composite feature in the Hybrid Random Forest Ensemble algorithm. PMID:24771344
Role of the lncRNA-p53 regulatory network in cancer. PMID:24721780
AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource. PMID:24573881
Production of a reference transcriptome and transcriptomic database (EdwardsiellaBase) for the lined sea anemone, Edwardsiella lineata, a parasitic cnidarian. PMID:24467778
Deep RNA sequencing reveals dynamic regulation of myocardial noncoding RNAs in failing human heart and remodeling with mechanical circulatory support. PMID:24429688
Sebnif: an integrated bioinformatics pipeline for the identification of novel large intergenic noncoding RNAs (lincRNAs)--application in human skeletal muscle cells. PMID:24400097
A computational framework to infer human disease-associated long noncoding RNAs. PMID:24392133
NONCODEv4: exploring the world of long non-coding RNA genes. PMID:24285305
Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing. PMID:24225384
NPInter v2.0: an updated database of ncRNA interactions. PMID:24217916
High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research. PMID:24160351
Genome-wide analysis of the rat colon reveals proximal-distal differences in histone modifications and proto-oncogene expression. PMID:24151245
Expression and regulation of intergenic long noncoding RNAs during T cell development and differentiation. PMID:24056746
Long non-coding RNAs and complex human diseases. PMID:24036441
The complexity of bladder cancer: long noncoding RNAs are on the stage. PMID:24006935
Identification and characterization of long non-coding RNAs related to mouse embryonic brain development from available transcriptomic data. PMID:23967161
Comprehensive characterization of 10,571 mouse large intergenic noncoding RNAs from whole transcriptome sequencing. PMID:23951020
Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells. PMID:23934149
A blood based 12-miRNA signature of Alzheimer disease patients. PMID:23895045
Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts. PMID:23892401
lncRNome: a comprehensive knowledgebase of human long noncoding RNAs. PMID:23846593
Long noncoding RNAs-related diseases, cancers, and drugs. PMID:23843741
CoRAL: predicting non-coding RNAs from small RNA-sequencing data. PMID:23700308
On the classification of long non-coding RNAs. PMID:23696037
Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs. PMID:23637635
Conserved expression of natural antisense transcripts in mammals. PMID:23577827
CentroidAlign-Web: A Fast and Accurate Multiple Aligner for Long Non-Coding RNAs. PMID:23507751
PLncDB: plant long non-coding RNA database. PMID:23476021
Multiclass relevance units machine: benchmark evaluation and application to small ncRNA discovery. PMID:23445533
Potential roles of microRNAs in regulating long intergenic noncoding RNAs. PMID:23369519
Molecular mechanisms and function prediction of long noncoding RNA. PMID:23319885
Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study. PMID:23237380
Imprinting and expression of Dio3os mirrors Dio3 in rat. PMID:23230449
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. PMID:23193281
LncRNADisease: a database for long-non-coding RNA-associated diseases. PMID:23175614
LNCipedia: a database for annotated human lncRNA transcript sequences and structures. PMID:23042674
Noncoder: a web interface for exon array-based detection of long non-coding RNAs. PMID:23012263
Tuning the engine: an introduction to resources on post-transcriptional regulation of gene expression. PMID:22995832
Online tools for bioinformatics analyses in nutrition sciences. PMID:22983844
Small RNA deep sequencing reveals a distinct miRNA signature released in exosomes from prion-infected neuronal cells. PMID:22965126
RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development. PMID:22960373
Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis. PMID:22312241
NONCODE: an integrated knowledge database of non-coding RNAs PubMed citations: 138.

138 articles citing: NONCODE: an integrated knowledge database of non-coding RNAs

Whole Transcriptome Sequencing of Peripheral Blood Shows That Immunity/GnRH/PI3K-Akt Pathways Are Associated With Opioid Use Disorder. PMID:35800019
A learning-based method to predict LncRNA-disease associations by combining CNN and ELM. PMID:35317723
DBHR: a collection of databases relevant to human research. PMID:35251694
The association of long non-coding RNA in the prognosis of oral squamous cell carcinoma. PMID:35023067
Identification of Novel Micropeptides Derived from Hepatocellular Carcinoma-Specific Long Noncoding RNA. PMID:35008483
miRNATissueAtlas2: an update to the human miRNA tissue atlas. PMID:34570238
Non-Coding Variants in Cancer: Mechanistic Insights and Clinical Potential for Personalized Medicine. PMID:34449663
Advances in Computational Methodologies for Classification and Sub-Cellular Locality Prediction of Non-Coding RNAs. PMID:34445436
Long Non-Coding RNA TRG-AS1 Promoted Proliferation and Invasion of Lung Cancer Cells Through the miR-224-5p/SMAD4 Axis. PMID:34408438
Web tools to perform long non-coding RNAs analysis in oncology research. PMID:34296748
An epigenetic switch regulates the ontogeny of AXL-positive/EGFR-TKi-resistant cells by modulating miR-335 expression. PMID:34254585
Long Non-Coding RNAs in Insects. PMID:33919662
Identification of the specific long-noncoding RNAs involved in night-break mediated flowering retardation in Chenopodium quinoa. PMID:33874907
Cardiovascular RNA markers and artificial intelligence may improve COVID-19 outcome: a position paper from the EU-CardioRNA COST Action CA17129. PMID:33839767
Prediction of lncRNA-Protein Interactions via the Multiple Information Integration. PMID:33718346
LncRNAs and Immunity: Coding the Immune System with Noncoding Oligonucleotides. PMID:33572313
Differentially expressed lncRNAs in liver tissues of TX mice with hepatolenticular degeneration. PMID:33446761
Graph embedding ensemble methods based on the heterogeneous network for lncRNA-miRNA interaction prediction. PMID:33334307
Functional interaction between long non-coding RNA and microRNA in rheumatoid arthritis. PMID:33319382
EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. PMID:33221906
Hypothetical Proteins as Predecessors of Long Non-coding RNAs. PMID:33214769
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. PMID:33196801
Two Compound Heterozygous Variants in SNX14 Cause Stereotypies and Dystonia in Autosomal Recessive Spinocerebellar Ataxia 20. PMID:33193593
Long non-coding RNAs: emerging players regulating plant abiotic stress response and adaptation. PMID:33046001
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
Online Databases and Non-coding RNAs in Cardiovascular Diseases. PMID:32285405
Engineering salinity tolerance in plants: progress and prospects. PMID:32152761
Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs. PMID:31877126
IDLDA: An Improved Diffusion Model for Predicting LncRNA-Disease Associations. PMID:31867043
Projection-Based Neighborhood Non-Negative Matrix Factorization for lncRNA-Protein Interaction Prediction. PMID:31824563
The effects of long non-coding ribonucleic acids on various cellular components in rheumatoid arthritis. PMID:31605483
Insights into the Functions of LncRNAs in Drosophila. PMID:31546813
CASC15 contributes to proliferation and invasion through regulating miR-766-5p/ KLK12 axis in lung cancer. PMID:31378128
An expanded landscape of human long noncoding RNA. PMID:31350901
Non-Coding RNAs and their Integrated Networks. PMID:31301674
De novo assembly of the goldfish (Carassius auratus) genome and the evolution of genes after whole-genome duplication. PMID:31249862
Coding or Noncoding, the Converging Concepts of RNAs. PMID:31178900
The germ cell marker dead end reveals alternatively spliced transcripts with dissimilar expression. PMID:30787383
Genome-wide identification of long non-coding RNAs in tomato plants irradiated by neutrons followed by infection with Tomato yellow leaf curl virus. PMID:30713817
Arena-Idb: a platform to build human non-coding RNA interaction networks. PMID:30367585
ZFLNC: a comprehensive and well-annotated database for zebrafish lncRNA. PMID:30335154
Computational resources associating diseases with genotypes, phenotypes and exposures. PMID:30102366
Non-coding RNAs: the riddle of the transcriptome and their perspectives in cancer. PMID:30069443
The emergence of long non-coding RNAs in hepatocellular carcinoma: an update. PMID:30026854
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish. PMID:29764394
The mRNA, miRNA and lncRNA networks in hepatocellular carcinoma: An integrative transcriptomic analysis from Gene Expression Omnibus. PMID:29512731
When Long Noncoding RNAs Meet Genome Editing in Pluripotent Stem Cells. PMID:29333164
Comparative analysis of miRNAs of two rapeseed genotypes in response to acetohydroxyacid synthase-inhibiting herbicides by high-throughput sequencing. PMID:28950015
Long Noncoding RNAs as Biomarkers in Cancer. PMID:28634418
Prediction of lncRNA-protein interactions using HeteSim scores based on heterogeneous networks. PMID:28623317
A Review on Recent Computational Methods for Predicting Noncoding RNAs. PMID:28553651
LncRNAs: From Basic Research to Medical Application. PMID:28367094
Genetic variability of the activity of bidirectional promoters: a pilot study in bovine muscle. PMID:28338730
Recurrently deregulated lncRNAs in hepatocellular carcinoma. PMID:28194035
Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination. PMID:28042575
A Review of Computational Methods for Finding Non-Coding RNA Genes. PMID:27918472
A critical overview of long non-coding RNA in glioma etiology 2016: an update. PMID:27629290
Long non-coding RNAs and complex diseases: from experimental results to computational models. PMID:27345524
Tracing the expression of circular RNAs in human pre-implantation embryos. PMID:27315811
NPInter v3.0: an upgraded database of noncoding RNA-associated interactions. PMID:27087310
Long non-coding RNA Databases in Cardiovascular Research. PMID:27049585
IL-22 Impedes the Proliferation of Schwann cells: Transcriptome Sequencing and Bioinformatics Analysis. PMID:26960328
Identifying Novel Transcriptional Regulators with Circadian Expression. PMID:26644408
NONCODE 2016: an informative and valuable data source of long non-coding RNAs. PMID:26586799
The Emerging Functions of Long Noncoding RNA in Immune Cells: Autoimmune Diseases. PMID:26090502
miRBoost: boosting support vector machines for microRNA precursor classification. PMID:25795417
Databases and web tools for cancer genomics study. PMID:25707591
Identification of Stably Expressed lncRNAs as Valid Endogenous Controls for Profiling of Human Glioma. PMID:25561975
Long non-coding RNA normalisers in human brain tissue. PMID:25528156
An update on LNCipedia: a database for annotated human lncRNA sequences. PMID:25378313
A novel class of somatic small RNAs similar to germ cell pachytene PIWI-interacting small RNAs. PMID:25320077
The lncRNA-MYC regulatory network in cancer. PMID:25139102
piRNAQuest: searching the piRNAome for silencers. PMID:24997126
Comprehensive microRNA profiling of prostate cancer cells after ionizing radiation treatment. PMID:24452514
NONCODEv4: exploring the world of long non-coding RNA genes. PMID:24285305
siRNA Genome Screening Approaches to Therapeutic Drug Repositioning. PMID:24275945
Long non-coding RNAs and complex human diseases. PMID:24036441
Detecting and comparing non-coding RNAs in the high-throughput era. PMID:23887659
A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration. PMID:23425577
An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs. PMID:23369107
MicroRNA 3' end nucleotide modification patterns and arm selection preference in liver tissues. PMID:23282006
Comprehensive analysis of microRNAs in breast cancer. PMID:23281739
Computer-assisted annotation of murine Sertoli cell small RNA transcriptome. PMID:23136297
LNCipedia: a database for annotated human lncRNA transcript sequences and structures. PMID:23042674
Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants. PMID:22613869
Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis. PMID:22312241
Long non-coding RNAs and cancer: a new frontier of translational research? PMID:22266873
In-silico human genomics with GeneCards. PMID:22155609
NONCODE v3.0: integrative annotation of long noncoding RNAs. PMID:22135294
RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA. PMID:21947200
Local structural alignment of RNA with affine gap model. PMID:21554760
The functional role of long non-coding RNA in human carcinomas. PMID:21489289
Rice-Map: a new-generation rice genome browser. PMID:21450055
Discovery of novel human breast cancer microRNAs from deep sequencing data by analysis of pri-microRNA secondary structures. PMID:21346806
A k-mer scheme to predict piRNAs and characterize locust piRNAs. PMID:21224287
A framework for automated enrichment of functionally significant inverted repeats in whole genomes. PMID:20946604
Adjacent nucleotide dependence in ncRNA and order-1 SCFG for ncRNA identification. PMID:20927402
ncRNAimprint: a comprehensive database of mammalian imprinted noncoding RNAs. PMID:20801769
PsRNA: a computing engine for the comparative identification of putative small RNA locations within intergenic regions. PMID:20691398
Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68. PMID:20668074
Genome-wide computational identification and manual annotation of human long noncoding RNA genes. PMID:20587619
Characteristics of transposable element exonization within human and mouse. PMID:20532223
Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis. PMID:19956260
Homology-based annotation of non-coding RNAs in the genomes of Schistosoma mansoni and Schistosoma japonicum. PMID:19814823
Estimating the fraction of non-coding RNAs in mammalian transcriptomes. PMID:19812767
Prediction and identification of tumor-specific noncoding RNAs from human UniGene. PMID:19757216
De novo computational prediction of non-coding RNA genes in prokaryotic genomes. PMID:19744996
No-match ORESTES explored as tumor markers. PMID:19270067
The Rat Genome Database 2009: variation, ontologies and pathways. PMID:18996890
Analysis and classification of RNA tertiary structures. PMID:18824509
Bioinformatics in China: a personal perspective. PMID:18437216
RNACompress: Grammar-based compression and informational complexity measurement of RNA secondary structure. PMID:18373878
Exploration of small RNAs. PMID:18225959
Evolutionary patterns of non-coding RNAs. PMID:18202870
LeARN: a platform for detecting, clustering and annotating non-coding RNAs. PMID:18194551
A role for microRNAs in maintenance of mouse mammary epithelial progenitor cells. PMID:18079172
Computational RNomics of drosophilids. PMID:17996037
RNA sequence analysis defines Dicer's role in mouse embryonic stem cells. PMID:17989215
Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics. PMID:17971083
Computational methods in noncoding RNA research. PMID:17786447
Mapping the C. elegans noncoding transcriptome with a whole-genome tiling microarray. PMID:17785534
miRAS: a data processing system for miRNA expression profiling study. PMID:17683571
Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions. PMID:17577407
RNAstrand: reading direction of structured RNAs in multiple sequence alignments. PMID:17540014
Dynamic regulation of miRNA expression in ordered stages of cellular development. PMID:17344418
Comparative analysis of genome tiling array data reveals many novel primate-specific functional RNAs in human. PMID:17288572
Improvement of whole-genome annotation of cereals through comparative analyses. PMID:17284677
Considerations in the identification of functional RNA structural elements in genomic alignments. PMID:17263882
An annotated cDNA library and microarray for large-scale gene-expression studies in the ant Solenopsis invicta. PMID:17224046
fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences. PMID:17099231
Bioinformatic discovery of microRNA precursors from human ESTs and introns. PMID:16813663
Distinguishing protein-coding from non-coding RNAs through support vector machines. PMID:16683024
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. PMID:16381834
Argonaute--a database for gene regulation by mammalian microRNAs. PMID:16381827
Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression. PMID:16344563
Web-based resources for comparative genomics. PMID:16197736
Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes. PMID:16087735
NONCODE v2.0: decoding the non-coding PubMed citations: 59.

59 articles citing: NONCODE v2.0: decoding the non-coding

SmProt: A Reliable Repository with Comprehensive Annotation of Small Proteins Identified from Ribosome Profiling. PMID:34536568
Using Network Distance Analysis to Predict lncRNA-miRNA Interactions. PMID:34232474
EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments. PMID:33221906
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. PMID:33196801
Non-Coding RNA Databases in Cardiovascular Research. PMID:32887511
An expanded landscape of human long noncoding RNA. PMID:31350901
The emergence of long non-coding RNAs in hepatocellular carcinoma: an update. PMID:30026854
A comprehensive review of web-based resources of non-coding RNAs for plant science research. PMID:29989090
Aedes aegypti microRNA miR-2b regulates ubiquitin-related modifier to control chikungunya virus replication. PMID:29247247
CPC2: a fast and accurate coding potential calculator based on sequence intrinsic features. PMID:28521017
Long non-coding RNAs and complex diseases: from experimental results to computational models. PMID:27345524
NPInter v3.0: an upgraded database of noncoding RNA-associated interactions. PMID:27087310
Long non-coding RNA Databases in Cardiovascular Research. PMID:27049585
Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome. PMID:26658305
NONCODE 2016: an informative and valuable data source of long non-coding RNAs. PMID:26586799
RAG-3D: a search tool for RNA 3D substructures. PMID:26304547
Identification and characterization of mRNA-like noncoding RNAs in Salvia miltiorrhiza. PMID:25601000
Identification of Stably Expressed lncRNAs as Valid Endogenous Controls for Profiling of Human Glioma. PMID:25561975
Long non-coding RNA normalisers in human brain tissue. PMID:25528156
RNA sequencing analysis of the gametophyte transcriptome from the liverwort, Marchantia polymorpha. PMID:24841988
Identifying microRNAs and transcript targets in Jatropha seeds. PMID:24551031
NONCODEv4: exploring the world of long non-coding RNA genes. PMID:24285305
The complete exosome workflow solution: from isolation to characterization of RNA cargo. PMID:24205503
Long noncoding RNAs-related diseases, cancers, and drugs. PMID:23843741
NF-Y coassociates with FOS at promoters, enhancers, repetitive elements, and inactive chromatin regions, and is stereo-positioned with growth-controlling transcription factors. PMID:23595228
pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes. PMID:23396300
Transcribed pseudogene ψPPM1K generates endogenous siRNA to suppress oncogenic cell growth in hepatocellular carcinoma. PMID:23376929
An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs. PMID:23369107
Identifying conserved and novel microRNAs in developing seeds of Brassica napus using deep sequencing. PMID:23226347
Identification of microRNAs from Eugenia uniflora by high-throughput sequencing and bioinformatics analysis. PMID:23166775
Polyadenylation-dependent control of long noncoding RNA expression by the poly(A)-binding protein nuclear 1. PMID:23166521
Computational analysis of noncoding RNAs. PMID:22991327
A global identification and analysis of small nucleolar RNAs and possible intermediate-sized non-coding RNAs in Oryza sativa. PMID:22986792
High-throughput sequencing of black pepper root transcriptome. PMID:22984782
Bovine ncRNAs are abundant, primarily intergenic, conserved and associated with regulatory genes. PMID:22880061
Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants. PMID:22613869
Bioinformatics tools and novel challenges in long non-coding RNAs (lncRNAs) functional analysis. PMID:22312241
Thousands of Novel Transcripts Identified in Mouse Cerebrum, Testis, and ES Cells Based on ribo-minus RNA Sequencing. PMID:22303387
Deep-sequencing of endothelial cells exposed to hypoxia reveals the complexity of known and novel microRNAs. PMID:22282338
Comprehensive transcriptome analysis reveals novel genes involved in cardiac glycoside biosynthesis and mlncRNAs associated with secondary metabolism and stress response in Digitalis purpurea. PMID:22233149
NONCODE v3.0: integrative annotation of long noncoding RNAs. PMID:22135294
ncFANs: a web server for functional annotation of long non-coding RNAs. PMID:21715382
Databases and resources for human small non-coding RNAs. PMID:21504869
Computational detection and functional analysis of human tissue-specific A-to-I RNA editing. PMID:21448465
The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression. PMID:21378118
Female-biased expression of long non-coding RNAs in domains that escape X-inactivation in mouse. PMID:21047393
Characteristics of transposable element exonization within human and mouse. PMID:20532223
Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. PMID:20350329
Discovery of novel human transcript variants by analysis of intronic single-block EST with polyadenylation site. PMID:19906316
Screening non-coding RNAs in transcriptomes from neglected species using PORTRAIT: case study of the pathogenic fungus Paracoccidioides brasiliensis. PMID:19653905
Disease-causing 7.4 kb cis-regulatory deletion disrupting conserved non-coding sequences and their interaction with the FOXL2 promotor: implications for mutation screening. PMID:19543368
FASTR3D: a fast and accurate search tool for similar RNA 3D structures. PMID:19435878
A transcriptional sketch of a primary human breast cancer by 454 deep sequencing. PMID:19379481
Non-coding RNA annotation of the genome of Trichoplax adhaerens. PMID:19151082
Primate-specific spliced PMCHL RNAs are non-protein coding in human and macaque tissues. PMID:19068116
sRNAMap: genomic maps for small non-coding RNAs, their regulators and their targets in microbial genomes. PMID:19015153
The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs. PMID:18948287
OKCAM: an ontology-based, human-centered knowledgebase for cell adhesion molecules. PMID:18790807
Bioinformatics in China: a personal perspective. PMID:18437216

https://doi.org/10.1093/nar/gkaa1046

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More detailed information about this field from each metasource.

extracellular exosome
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

function analysis
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

long non-coding rna
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

long non-coding ribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

non-coding rna
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: re3data.org
version: re3data.org: NONCODE; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3194Q last accessed: 2022-11-04

rna secondary structure
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

rna sequence
metasource: Fairsharing.org
version: FAIRsharing.org: NONCODE; NONCODE; DOI: https://doi.org/10.25504/FAIRsharing.hmb1f4; Last edited: March 17, 2020, 12:35 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

rna sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

biology
metasource: re3data.org
version: re3data.org: NONCODE; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3194Q last accessed: 2022-11-04

genetics
metasource: re3data.org
version: re3data.org: NONCODE; editing status 2021-11-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3194Q last accessed: 2022-11-04

functional, regulatory and non-coding rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

dna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

rna
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:52.869309

extracellular exosome function analysis gene expression gene expression long non-coding rna long non-coding ribonucleic acid non-coding rna rna secondary structure rna sequence rna sequence genetics functional, regulatory and non-coding rna dna rna

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