LNCipedia

Names
More detailed information about this field from each metasource.

LNCipedia
metasource: Fairsharing.org
version: None

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:21.334586

lncipedia
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:21.334586

Other names: lncipedia

LNCipedia is a database for human long non-coding RNA (lncRNA) transcripts and genes. In addition to basic transcript information and gene structure, several statistics are determined for each entry in the database, such as secondary structure information, protein coding potential and microRNA binding sites. Available literature on specific lncRNAs is linked, and users or authors can submit articles through a web interface. LNCipedia is publicly available and allows users to query and download lncRNA sequences and structures based on different search criteria.

Webpage:

https://lncipedia.org/

Publications:

Publications
More detailed information about this field from each metasource.

LNCipedia: a database for annotated human lncRNA transcript sequences and structures
PMID: 23042674
metasource: Fairsharing.org
version: None

An update on LNCipedia: a database for annotated human lncRNA sequences
PMID: 25378313
metasource: Fairsharing.org
version: None

An update on LNCipedia: a database for annotated human lncRNA sequences
PMID: 25829178
metasource: Fairsharing.org
version: None

http://dx.doi.org/10.1093/nar/gku1060
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:21.334586

LNCipedia: a database for annotated human lncRNA transcript sequences and structures PubMed citations: 255.

255 articles citing: LNCipedia: a database for annotated human lncRNA transcript sequences and structures

Analysis of the lncRNA-Associated Competing Endogenous RNA (ceRNA) Network for Tendinopathy. PMID:35645614
BioTAGME: A Comprehensive Platform for Biological Knowledge Network Analysis. PMID:35571058
Non-Coding RNAs in Tuberculosis Epidemiology: Platforms and Approaches for Investigating the Genome's Dark Matter. PMID:35457250
SAWRPI: A Stacking Ensemble Framework With Adaptive Weight for Predicting ncRNA-Protein Interactions Using Sequence Information. PMID:35360836
The paradoxical functions of long noncoding RNAs in hepatocellular carcinoma: Implications in therapeutic opportunities and precision medicine. PMID:35224152
DeepWalk based method to predict lncRNA-miRNA associations via lncRNA-miRNA-disease-protein-drug graph. PMID:35216549
Long noncoding RNA EIF1AX-AS1 promotes endometrial cancer cell apoptosis by affecting EIF1AX mRNA stabilization. PMID:35080085
Bioinformatics Analysis for the Roles of long non-coding RNAs in the Immune Responses of Mouse Peripheral Blood Mononuclear Cells Exposed to Low-Dose Ionizing Radiation. PMID:35069048
Whole-genome-scale identification of novel non-protein-coding RNAs controlling cell proliferation and survival through a functional forward genetics strategy. PMID:34997014
Common Features in lncRNA Annotation and Classification: A Survey. PMID:34940758
RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation. PMID:34718734
lncRNA RP11-147L13.8 suppresses metastasis and chemo-resistance by modulating the phosphorylation of c-Jun protein in GBC. PMID:34703881
ceRNAs in Cancer: Mechanism and Functions in a Comprehensive Regulatory Network. PMID:34659409
High frequency of intron retention and clustered H3K4me3-marked nucleosomes in short first introns of human long non-coding RNAs. PMID:34579770
Advances in Computational Methodologies for Classification and Sub-Cellular Locality Prediction of Non-Coding RNAs. PMID:34445436
Comment on "Altered Expression of Long Non-coding RNAs in Peripheral Blood Mononuclear Cells of Patients with Alzheimer's Disease". PMID:34390470
Web tools to perform long non-coding RNAs analysis in oncology research. PMID:34296748
Long Non-coding RNAs: Mechanisms, Experimental, and Computational Approaches in Identification, Characterization, and Their Biomarker Potential in Cancer. PMID:34276764
ceRNA network development and tumor-infiltrating immune cell analysis in hepatocellular carcinoma. PMID:34148185
A machine learning framework that integrates multi-omics data predicts cancer-related LncRNAs. PMID:34134612
Lantern: an integrative repository of functional annotations for lncRNAs in the human genome. PMID:34039271
Highly deregulated lncRNA LOC is associated with overall worse prognosis in Hepatocellular Carcinoma patients. PMID:33976720
Emerging role of non-coding RNA in health and disease. PMID:33881724
IPCARF: improving lncRNA-disease association prediction using incremental principal component analysis feature selection and a random forest classifier. PMID:33794766
Unveiling the long non-coding RNA profile of porcine reproductive and respiratory syndrome virus-infected porcine alveolar macrophages. PMID:33711920
A novel prognostic prediction model based on seven immune-related RNAs for predicting overall survival of patients in early cervical squamous cell carcinoma. PMID:33588862
Long non-coding RNAs as novel therapeutic targets in juvenile myelomonocytic leukemia. PMID:33531590
Oncogenic HPV promotes the expression of the long noncoding RNA lnc-FANCI-2 through E7 and YY1. PMID:33436409
Circulating Non-Coding RNAs in Head and Neck Cancer: Roles in Diagnosis, Prognosis, and Therapy Monitoring. PMID:33396240
Identifying Discriminative Biological Function Features and Rules for Cancer-Related Long Non-coding RNAs. PMID:33391350
The lncRNA Toolkit: Databases and In Silico Tools for lncRNA Analysis. PMID:33339309
PHF6 Expression Levels Impact Human Hematopoietic Stem Cell Differentiation. PMID:33251223
Hypothetical Proteins as Predecessors of Long Non-coding RNAs. PMID:33214769
LncRNA LHFPL3-AS1 contributes to tumorigenesis of melanoma stem cells via the miR-181a-5p/BCL2 pathway. PMID:33149126
Long non-coding RNAs (lncRNAs) in spermatogenesis and male infertility. PMID:33126901
Identification and Characterization of lncRNAs Related to the Muscle Growth and Development of Japanese Flounder (Paralichthys olivaceus). PMID:33033494
lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA. PMID:33020484
Temozolomide-Induced RNA Interactome Uncovers Novel LncRNA Regulatory Loops in Glioblastoma. PMID:32927769
Identifying Circular RNA and Predicting Its Regulatory Interactions by Machine Learning. PMID:32849764
Pan-cancer proteogenomic analysis reveals long and circular noncoding RNAs encoding peptides. PMID:32803163
Long non-coding RNA RFPL3S is a novel prognostic biomarker in lung cancer. PMID:32724368
PHLPP2 is regulated by competing endogenous RNA network in pathogenesis of colon cancer. PMID:32633726
Non-coding RNAs and Exosomes: Their Role in the Pathogenesis of Sepsis. PMID:32506014
GC-AG Introns Features in Long Non-coding and Protein-Coding Genes Suggest Their Role in Gene Expression Regulation. PMID:32499820
Visualizing the functional 3D shape and topography of long noncoding RNAs by single-particle atomic force microscopy and in-solution hydrodynamic techniques. PMID:32451442
Online Databases and Non-coding RNAs in Cardiovascular Diseases. PMID:32285405
Significant association between long non-coding RNA H19 polymorphisms and cancer susceptibility: A PRISMA-compliant meta-analysis and bioinformatics prediction. PMID:32282694
Genome-Wide Analysis and Function Prediction of Long Noncoding RNAs in Sheep Pituitary Gland Associated with Sexual Maturation. PMID:32192168
Systematic identification of long intergenic non-coding RNAs expressed in bovine oocytes. PMID:32085734
Widespread Dysregulation of Long Noncoding Genes Associated With Fatty Acid Metabolism, Cell Division, and Immune Response Gene Networks in Xenobiotic-exposed Rat Liver. PMID:31926019
Non-coding RNAs underlie genetic predisposition to breast cancer. PMID:31910864
LINC01714 Enhances Gemcitabine Sensitivity by Modulating FOXO3 Phosphorylation in Cholangiocarcinoma. PMID:31902744
Research progress on the interactions between long non-coding RNAs and microRNAs in human cancer. PMID:31897175
Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs. PMID:31877126
Projection-Based Neighborhood Non-Negative Matrix Factorization for lncRNA-Protein Interaction Prediction. PMID:31824563
BC200 overexpression contributes to luminal and triple negative breast cancer pathogenesis. PMID:31646972
The Construction and Comprehensive Analysis of ceRNA Networks and Tumor-Infiltrating Immune Cells in Bone Metastatic Melanoma. PMID:31608101
A comprehensive method protocol for annotation and integrated functional understanding of lncRNAs. PMID:31578571
LNRLMI: Linear neighbour representation for predicting lncRNA-miRNA interactions. PMID:31568653
The Flick of a Switch: Conferring Survival Advantage to Breast Cancer Stem Cells Through Metabolic Plasticity. PMID:31552162
Conserved Pseudoknots in lncRNA MEG3 Are Essential for Stimulation of the p53 Pathway. PMID:31444106
The nuclear hypoxia-regulated NLUCAT1 long non-coding RNA contributes to an aggressive phenotype in lung adenocarcinoma through regulation of oxidative stress. PMID:31417181
Activation of PARP-1 by snoRNAs Controls Ribosome Biogenesis and Cell Growth via the RNA Helicase DDX21. PMID:31351877
Up-regulation of long non-coding RNA-PCAT-1 promotes invasion and metastasis in esophageal squamous cell carcinoma. PMID:31338011
Distinct Profiles of Cell-Free MicroRNAs in Plasma of Veterans with Post-Traumatic Stress Disorder. PMID:31277223
Survival analysis and functional annotation of long non-coding RNAs in lung adenocarcinoma. PMID:31211495
The opposite role of alternatively spliced isoforms of LINC00477 in gastric cancer. PMID:31191018
Long non-coding RNA H19 promotes the proliferation and invasion of lung cancer cells and regulates the expression of E-cadherin, N-cadherin, and vimentin. PMID:31190899
Coding or Noncoding, the Converging Concepts of RNAs. PMID:31178900
LncRNA GAS5 regulates vascular smooth muscle cell cycle arrest and apoptosis via p53 pathway. PMID:31167125
Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis. PMID:31142264
LncRNAs Regulatory Networks in Cellular Senescence. PMID:31141943
Long non-coding RNAs in the spinal cord injury: Novel spotlight. PMID:31140726
Identification of a Combined RNA Prognostic Signature in Adenocarcinoma of the Lung. PMID:31132294
Prediction of Long Non-Coding RNAs Based on Deep Learning. PMID:30987229
Integrative analysis identifies lincRNAs up- and downstream of neuroblastoma driver genes. PMID:30952905
RNA-sequencing in ophthalmology research: considerations for experimental design and analysis. PMID:30911735
Long Noncoding RNA and Protein Interactions: From Experimental Results to Computational Models Based on Network Methods. PMID:30875752
LncRNA SNHG16 Functions as an Oncogene by Sponging MiR-135a and Promotes JAK2/STAT3 Signal Pathway in Gastric Cancer. PMID:30854107
Comparative Gene Expression Profiles in Parathyroid Adenoma and Normal Parathyroid Tissue. PMID:30832348
Long Chain Non-Coding RNA (lncRNA) HOTAIR Knockdown Increases miR-454-3p to Suppress Gastric Cancer Growth by Targeting STAT3/Cyclin D1. PMID:30810117
LEADeR role of miR-205 host gene as long noncoding RNA in prostate basal cell differentiation. PMID:30659180
Expression signatures of long non-coding RNA and mRNA in human traumatic brain injury. PMID:30632503
Novel link prediction for large-scale miRNA-lncRNA interaction network in a bipartite graph. PMID:30598112
LONG-NONCODING RNAs in gastroesophageal cancers. PMID:30533569
SFPEL-LPI: Sequence-based feature projection ensemble learning for predicting LncRNA-protein interactions. PMID:30533006
Detection of long non-coding RNA homology, a comparative study on alignment and alignment-free metrics. PMID:30400819
LNCipedia 5: towards a reference set of human long non-coding RNAs. PMID:30371849
mRNAs and lncRNAs intrinsically form secondary structures with short end-to-end distances. PMID:30337527
Role of flow-sensitive microRNAs and long noncoding RNAs in vascular dysfunction and atherosclerosis. PMID:30300747
NKX2-1-AS1 negatively regulates CD274/PD-L1, cell-cell interaction genes, and limits human lung carcinoma cell migration. PMID:30258080
Targeted Genomic Screen Reveals Focal Long Non-Coding RNA Copy Number Alterations in Cancer Cell Lines. PMID:30217017
Detecting long non-coding RNA biomarkers in prostate cancer liquid biopsies: Hype or hope? PMID:30159441
Long noncoding RNA PVT1-214 promotes proliferation and invasion of colorectal cancer by stabilizing Lin28 and interacting with miR-128. PMID:30076414
Long noncoding RNA expression in the cervix mid-pregnancy is associated with the length of gestation at delivery. PMID:30045669
Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data. PMID:30041657
Pathological bases and clinical impact of long noncoding RNAs in prostate cancer: a new budding star. PMID:30037351
The emergence of long non-coding RNAs in hepatocellular carcinoma: an update. PMID:30026854
Comprehensive identification of long noncoding RNAs in colorectal cancer. PMID:29963224
Platforms for Investigating LncRNA Functions. PMID:29945466
Islet Long Noncoding RNAs: A Playbook for Discovery and Characterization. PMID:29937433
Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics. PMID:29900110
The long non-coding RNA landscape in juvenile myelomonocytic leukemia. PMID:29858388
Gene-gene interaction network analysis of hepatocellular carcinoma using bioinformatic software. PMID:29805571
Long non-coding RNAs AC026904.1 and UCA1: a "one-two punch" for TGF-β-induced SNAI2 activation and epithelial-mesenchymal transition in breast cancer. PMID:29774079
The use of long non-coding RNAs as prognostic biomarkers and therapeutic targets in prostate cancer. PMID:29755696
Prediction of plant lncRNA by ensemble machine learning classifiers. PMID:29720103
Applicability of Precision Medicine Approaches to Managing Hypertension in Rural Populations. PMID:29710874
Long non-coding RNAs involved in the regulatory network during porcine pre-implantation embryonic development and iPSC induction. PMID:29703926
Present Scenario of Long Non-Coding RNAs in Plants. PMID:29657289
oncoNcRNA: A Web Portal for Exploring the Non-Coding RNAs with Oncogenic Potentials in Human Cancers. PMID:29657279
Insights into the Function of Long Noncoding RNAs in Sepsis Revealed by Gene Co-Expression Network Analysis. PMID:29657277
Non coding RNA analysis in fibrolamellar hepatocellular carcinoma. PMID:29535801
Discovery of coding regions in the human genome by integrated proteogenomics analysis workflow. PMID:29500430
Alcohol and hepatitis virus-dysregulated lncRNAs as potential biomarkers for hepatocellular carcinoma. PMID:29416609
Differentially expressed host long intergenic noncoding RNA and mRNA in HIV-1 and HIV-2 infection. PMID:29416066
Lnc2Catlas: an atlas of long noncoding RNAs associated with risk of cancers. PMID:29382910
Advances of Long Noncoding RNAs-mediated Regulation in Reproduction. PMID:29336373
When Long Noncoding RNAs Meet Genome Editing in Pluripotent Stem Cells. PMID:29333164
Statistical analysis of non-coding RNA data. PMID:29306017
Natural Antisense Transcripts: Molecular Mechanisms and Implications in Breast Cancers. PMID:29301303
A 4-lncRNA scoring system for prognostication of adult myelodysplastic syndromes. PMID:29296792
LncRNA AK023391 promotes tumorigenesis and invasion of gastric cancer through activation of the PI3K/Akt signaling pathway. PMID:29282102
Are Fusion Transcripts in Relapsed/Metastatic Head and Neck Cancer Patients Predictive of Response to Anti-EGFR Therapies? PMID:29259349
RNAStructuromeDB: A genome-wide database for RNA structural inference. PMID:29222504
decodeRNA- predicting non-coding RNA functions using guilt-by-association. PMID:29220434
Non-coding RNA: a potential biomarker and therapeutic target for sepsis. PMID:29207683
A Novel Y-Specific Long Non-Coding RNA Associated with Cellular Lipid Accumulation in HepG2 cells and Atherosclerosis-related Genes. PMID:29196750
Long non-coding RNAs in Colorectal Cancer: Progression and Future Directions. PMID:29158793
Molecular Crosstalking among Noncoding RNAs: A New Network Layer of Genome Regulation in Cancer. PMID:29147648
Functional annotation of structural ncRNAs within enhancer RNAs in the human genome: implications for human disease. PMID:29138457
The role of miRNA and lncRNA in gastric cancer. PMID:29113415
Chromosome preference of disease genes and vectorization for the prediction of non-coding disease genes. PMID:29108274
Long non-coding RNA HNF1A-AS1 promotes proliferation and suppresses apoptosis of bladder cancer cells through upregulating Bcl-2. PMID:29100339
Expression and regulation of long noncoding RNAs during the osteogenic differentiation of periodontal ligament stem cells in the inflammatory microenvironment. PMID:29070806
Constructing prediction models from expression profiles for large scale lncRNA-miRNA interaction profiling. PMID:29069317
The Function and Therapeutic Potential of Long Non-coding RNAs in Cardiovascular Development and Disease. PMID:28918050
Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project. PMID:28853897
Short and Long Noncoding RNAs Regulate the Epigenetic Status of Cells. PMID:28847161
Interaction and cross-talk between non-coding RNAs. PMID:28840253
Regulation of Peripheral Myelination through Transcriptional Buffering of Egr2 by an Antisense Long Non-coding RNA. PMID:28834756
Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection. PMID:28803142
Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function. PMID:28747224
A genome-wide association scan of biological processes involved in oral lichen planus and oral squamous cell carcinoma. PMID:28640079
Long Noncoding RNAs as Biomarkers in Cancer. PMID:28634418
Insights from Global Analyses of Long Noncoding RNAs in Breast Cancer. PMID:28616363
lncRNA-screen: an interactive platform for computationally screening long non-coding RNAs in large genomics datasets. PMID:28583068
DDX11-AS1 as potential therapy targets for human hepatocellular carcinoma. PMID:28496001
Long non-coding RNAs in cutaneous melanoma: clinical perspectives. PMID:28415644
Exploring functions of long noncoding RNAs across multiple cancers through co-expression network. PMID:28389669
DES-ncRNA: A knowledgebase for exploring information about human micro and long noncoding RNAs based on literature-mining. PMID:28387604
LncRNAs: From Basic Research to Medical Application. PMID:28367094
Influence of microRNAs and Long Non-Coding RNAs in Cancer Chemoresistance. PMID:28273813
T-ALL and thymocytes: a message of noncoding RNAs. PMID:28270163
Long noncoding RNAs and sulforaphane: a target for chemoprevention and suppression of prostate cancer. PMID:28131897
Non-Coding RNAs in Lung Cancer: Contribution of Bioinformatics Analysis to the Development of Non-Invasive Diagnostic Tools. PMID:28035947
Expression profiling and functional annotation of noncoding genes across 11 distinct organs in rat development. PMID:27934932
SNHG8 is identified as a key regulator of epstein-barr virus(EBV)-associated gastric cancer by an integrative analysis of lncRNA and mRNA expression. PMID:27835598
Mining, Validation, and Clinical Significance of Colorectal Cancer (CRC)-Associated lncRNAs. PMID:27788162
Differential expression of lncRNAs during the HIV replication cycle: an underestimated layer in the HIV-host interplay. PMID:27782208
lncScore: alignment-free identification of long noncoding RNA from assembled novel transcripts. PMID:27708423
RNA-seq analysis identifies key long non-coding RNAs connected to the pathogenesis of alcohol-associated head and neck squamous cell carcinoma. PMID:27698869
Co-expressed differentially expressed genes and long non-coding RNAs involved in the celecoxib treatment of gastric cancer: An RNA sequencing analysis. PMID:27698747
Unique long non-coding RNA expression signature in ETV6/RUNX1-driven B-cell precursor acute lymphoblastic leukemia. PMID:27650541
A critical overview of long non-coding RNA in glioma etiology 2016: an update. PMID:27629290
Portraying breast cancers with long noncoding RNAs. PMID:27617288
The long non-coding RNA, SNHG6-003, functions as a competing endogenous RNA to promote the progression of hepatocellular carcinoma. PMID:27530352
A Genomic Analysis of Factors Driving lincRNA Diversification: Lessons from Plants. PMID:27440919
Long non-coding RNAs and complex diseases: from experimental results to computational models. PMID:27345524
Conservation and tissue-specific transcription patterns of long noncoding RNAs. PMID:27335896
The non-coding landscape of head and neck squamous cell carcinoma. PMID:27323410
Long noncoding RNAs in prostate cancer: mechanisms and applications. PMID:27308347
Long noncoding RNA EGOT negatively affects the antiviral response and favors HCV replication. PMID:27283940
GFOD1 and peejar are promising markers for clear-cell renal cell carcinoma disease progression. PMID:27191742
Long noncoding RNA signatures define oncogenic subtypes in T-cell acute lymphoblastic leukemia. PMID:27168467
De novo deciphering three-dimensional chromatin interaction and topological domains by wavelet transformation of epigenetic profiles. PMID:27060148
Long non-coding RNA Databases in Cardiovascular Research. PMID:27049585
LIN28B is over-expressed in specific subtypes of pediatric leukemia and regulates lncRNA H19. PMID:26969084
A Bipartite Network-based Method for Prediction of Long Non-coding RNA-protein Interactions. PMID:26917505
LncDisease: a sequence based bioinformatics tool for predicting lncRNA-disease associations. PMID:26887819
Roles, Functions, and Mechanisms of Long Non-coding RNAs in Cancer. PMID:26883671
Competing endogenous RNA networks in human cancer: hypothesis, validation, and perspectives. PMID:26872371
LncRNAs: emerging players in gene regulation and disease pathogenesis. PMID:26690535
The long noncoding RNA HOXA transcript at the distal tip promotes colorectal cancer growth partially via silencing of p21 expression. PMID:26678886
A novel long non-coding RNA in the rheumatoid arthritis risk locus TRAF1-C5 influences C5 mRNA levels. PMID:26673966
RNA sequencing of transcriptomes in human brain regions: protein-coding and non-coding RNAs, isoforms and alleles. PMID:26597164
Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization. PMID:26516004
Genetics of RA susceptibility, what comes next? PMID:26509058
Long non-coding RNA profiling of human lymphoid progenitor cells reveals transcriptional divergence of B cell and T cell lineages. PMID:26502406
Identification of novel differentially expressed lncRNA and mRNA transcripts in clear cell renal cell carcinoma by expression profiling. PMID:26484251
Novel insights into a treatment for aplastic anemia based on the advanced proliferation of bone marrow‑derived mesenchymal stem cells induced by fibroblast growth factor 1. PMID:26460236
Effect of Environmental Chemical Stress on Nuclear Noncoding RNA Involved in Epigenetic Control. PMID:26339639
Allele-Selective Transcriptome Recruitment to Polysomes Primed for Translation: Protein-Coding and Noncoding RNAs, and RNA Isoforms. PMID:26331722
RNA sequencing from human neutrophils reveals distinct transcriptional differences associated with chronic inflammatory states. PMID:26310571
Discovery, Annotation, and Functional Analysis of Long Noncoding RNAs Controlling Cell-Cycle Gene Expression and Proliferation in Breast Cancer Cells. PMID:26236012
Long Non-Coding RNAs: The Key Players in Glioma Pathogenesis. PMID:26230711
Grabbing the genome by the NADs. PMID:26174338
Long Noncoding RNA in Digestive Tract Cancers: Function, Mechanism, and Potential Biomarker. PMID:26156325
PU.1-Regulated Long Noncoding RNA lnc-MC Controls Human Monocyte/Macrophage Differentiation through Interaction with MicroRNA 199a-5p. PMID:26149389
Characterization of the genome-wide TLX1 binding profile in T-cell acute lymphoblastic leukemia. PMID:26108691
Advances in long noncoding RNAs: identification, structure prediction and function annotation. PMID:26072035
Right ventricular long noncoding RNA expression in human heart failure. PMID:25992278
Transcriptome sequencing uncovers novel long noncoding and small nucleolar RNAs dysregulated in head and neck squamous cell carcinoma. PMID:25904139
HOTAIR forms an intricate and modular secondary structure. PMID:25866246
Epigenetic regulation in hepatocellular carcinoma requires long noncoding RNAs. PMID:25861629
ALDB: a domestic-animal long noncoding RNA database. PMID:25853886
The consensus 5' splice site motif inhibits mRNA nuclear export. PMID:25826302
Prognostic impact of HOTAIR expression is restricted to ER-negative breast cancers. PMID:25739705
Biological databases for human research. PMID:25712261
Novel long non-coding RNAs are specific diagnostic and prognostic markers for prostate cancer. PMID:25686826
Identification of novel long non-coding RNAs in clear cell renal cell carcinoma. PMID:25685243
Non-coding RNA: what is functional and what is junk? PMID:25674102
The long intergenic noncoding RNA landscape of human lymphocytes highlights the regulation of T cell differentiation by linc-MAF-4. PMID:25621826
Long Non-Coding RNA BST2/BISPR is Induced by IFN and Regulates the Expression of the Antiviral Factor Tetherin. PMID:25620967
The landscape of long noncoding RNAs in the human transcriptome. PMID:25599403
Human long noncoding RNAs are substantially less folded than messenger RNAs. PMID:25540450
ViVar: a comprehensive platform for the analysis and visualization of structural genomic variation. PMID:25503062
Investigation of serum lncRNA-uc003wbd and lncRNA-AF085935 expression profile in patients with hepatocellular carcinoma and HBV. PMID:25501706
Role of Pnn in alternative splicing of a specific subset of lncRNAs of the corneal epithelium. PMID:25489234
From discovery to function: the expanding roles of long noncoding RNAs in physiology and disease. PMID:25426780
Type I Interferon Regulates the Expression of Long Non-Coding RNAs. PMID:25414701
LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression. PMID:25399422
LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs. PMID:25399417
An update on LNCipedia: a database for annotated human lncRNA sequences. PMID:25378313
A genome-wide association study for diabetic retinopathy in a Japanese population: potential association with a long intergenic non-coding RNA. PMID:25364816
The Notch driven long non-coding RNA repertoire in T-cell acute lymphoblastic leukemia. PMID:25344525
lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse. PMID:25332392
Databases for lncRNAs: a comparative evaluation of emerging tools. PMID:25323317
Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells. PMID:25317556
The structure, function and evolution of proteins that bind DNA and RNA. PMID:25269475
LncRBase: an enriched resource for lncRNA information. PMID:25233092
Emerging paradigms of long non-coding RNAs in gastrointestinal cancer. PMID:25232506
A proteogenomics approach integrating proteomics and ribosome profiling increases the efficiency of protein identification and enables the discovery of alternative translation start sites. PMID:25156699
Long non-coding RNAs in cancer: implications for personalized therapy. PMID:25113790
SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites. PMID:25075616
A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers. PMID:25013169
Identification of potential therapeutic targets in a model of neuropathic pain. PMID:24904634
Role of non-coding RNAs in maintaining primary airway smooth muscle cells. PMID:24886442
Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. PMID:24669905
Long non-coding RNA and alternative splicing modulations in Parkinson's leukocytes identified by RNA sequencing. PMID:24651478
Missing links in cardiology: long non-coding RNAs enter the arena. PMID:24619481
Identification and initial functional characterization of a human vascular cell-enriched long noncoding RNA. PMID:24578380
Systematically profiling and annotating long intergenic non-coding RNAs in human embryonic stem cell. PMID:24564552
Evidence for a crucial role of a host non-coding RNA in influenza A virus replication. PMID:24440876
The multilayered complexity of ceRNA crosstalk and competition. PMID:24429633
The non-coding transcriptome as a dynamic regulator of cancer metastasis. PMID:24346158
Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing. PMID:24225384
Long non-coding RNAs and complex human diseases. PMID:24036441
Long noncoding RNAs-related diseases, cancers, and drugs. PMID:23843741
Long non-coding RNAs: novel targets for nervous system disease diagnosis and therapy. PMID:23817781
Comprehensive functional annotation of seventy-one breast cancer risk Loci. PMID:23717510
Pride-asap: automatic fragment ion annotation of identified PRIDE spectra. PMID:23603108
CentroidAlign-Web: A Fast and Accurate Multiple Aligner for Long Non-Coding RNAs. PMID:23507751
Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events. PMID:23429522
Molecular mechanisms and function prediction of long noncoding RNA. PMID:23319885
An update on LNCipedia: a database for annotated human lncRNA sequences PubMed citations: 141.

141 articles citing: An update on LNCipedia: a database for annotated human lncRNA sequences

Identification of Differentially Expressed Long Noncoding RNAs as Functional Biomarkers and Construction of Function Enrichment Network in Oral Squamous Cell Carcinoma. PMID:35795287
Heterogeneous graph inference based on similarity network fusion for predicting lncRNA-miRNA interaction. PMID:35496629
Integrative Analyses of Circulating mRNA and lncRNA Expression Profile in Plasma of Lung Cancer Patients. PMID:35433477
LncRNAs and Chromatin Modifications Pattern m6A Methylation at the Untranslated Regions of mRNAs. PMID:35368653
Common Features in lncRNA Annotation and Classification: A Survey. PMID:34940758
LINC00665 Targets miR-214-3p/MAPK1 Axis to Accelerate Hepatocellular Carcinoma Growth and Warburg Effect. PMID:34804162
LncRNAWiki 2.0: a knowledgebase of human long non-coding RNAs with enhanced curation model and database system. PMID:34751395
Construction of ceRNA network to identify the lncRNA and mRNA related to non-small cell lung cancer. PMID:34714841
Lnc-DC promotes estrogen independent growth and tamoxifen resistance in breast cancer. PMID:34697301
Targeting mutant p53 for cancer therapy: direct and indirect strategies. PMID:34583722
Non-Coding RNA in Systemic Sclerosis: A Valuable Tool for Translational and Personalized Medicine. PMID:34573278
Changthangi Pashmina Goat Genome: Sequencing, Assembly, and Annotation. PMID:34354739
Using Network Distance Analysis to Predict lncRNA-miRNA Interactions. PMID:34232474
Competing Endogenous RNA in Colorectal Cancer: An Analysis for Colon, Rectum, and Rectosigmoid Junction. PMID:34178670
LncRNAs and Available Databases. PMID:34160796
Epigenetic regulation of cellular functions in wound healing. PMID:33690920
The role of micropeptides in biology. PMID:33507325
Effect of emodin on long non-coding RNA-mRNA networks in rats with severe acute pancreatitis-induced acute lung injury. PMID:33438315
Direct Interactions with Nascent Transcripts Is Potentially a Common Targeting Mechanism of Long Non-Coding RNAs. PMID:33321875
Genetics of fulminant type 1 diabetes. PMID:33088637
lncRNAKB, a knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA. PMID:33020484
Integrated analysis of lncRNA, miRNA and mRNA reveals novel insights into the fertility regulation of large white sows. PMID:32928107
A novel antiviral lncRNA, EDAL, shields a T309 O-GlcNAcylation site to promote EZH2 lysosomal degradation. PMID:32873321
Functional annotation of human long noncoding RNAs via molecular phenotyping. PMID:32718982
Aging-regulated anti-apoptotic long non-coding RNA Sarrah augments recovery from acute myocardial infarction. PMID:32341350
Transcriptome Analyses of lncRNAs in A2E-Stressed Retinal Epithelial Cells Unveil Advanced Links between Metabolic Impairments Related to Oxidative Stress and Retinitis Pigmentosa. PMID:32326576
Online Databases and Non-coding RNAs in Cardiovascular Diseases. PMID:32285405
Genome-Wide Analysis and Function Prediction of Long Noncoding RNAs in Sheep Pituitary Gland Associated with Sexual Maturation. PMID:32192168
Unravelling the role of long non-coding RNA - LINC01087 in breast cancer. PMID:31989062
LINC00665 promotes breast cancer progression through regulation of the miR-379-5p/LIN28B axis. PMID:31907362
LncDisAP: a computation model for LncRNA-disease association prediction based on multiple biological datasets. PMID:31787106
Long noncoding RNAs in lipid metabolism: literature review and conservation analysis across species. PMID:31752679
Clinical relevance of the lnc-HNF1B-3:1 genetic polymorphisms in Western Chinese tuberculosis patients. PMID:31692082
Interior circular RNA. PMID:31532701
Long Noncoding RNAs in Pathological Cardiac Remodeling: A Review of the Update Literature. PMID:31355277
Integrated analysis of long non-coding RNA and mRNA expression in different colored skin of koi carp. PMID:31226932
Survival analysis and functional annotation of long non-coding RNAs in lung adenocarcinoma. PMID:31211495
Genome-wide identification and characterization of long non-coding RNAs expressed during sheep fetal and postnatal hair follicle development. PMID:31186438
Dynamic Transcriptome Analysis Reveals Potential Long Non-coding RNAs Governing Postnatal Pineal Development in Pig. PMID:31130986
The long non-coding RNA Cerox1 is a post transcriptional regulator of mitochondrial complex I catalytic activity. PMID:31045494
Investigation of somatic single nucleotide variations in human endogenous retrovirus elements and their potential association with cancer. PMID:30934003
TADKB: Family classification and a knowledge base of topologically associating domains. PMID:30871473
Long noncoding RNA expression profile and functional analysis in psoriasis. PMID:30816535
LINC01554-Mediated Glucose Metabolism Reprogramming Suppresses Tumorigenicity in Hepatocellular Carcinoma via Downregulating PKM2 Expression and Inhibiting Akt/mTOR Signaling Pathway. PMID:30809309
Upregulation of lncRNA NR_046683 Serves as a Prognostic Biomarker and Potential Drug Target for Multiple Myeloma. PMID:30766487
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products. PMID:30668832
Incorporation of long non-coding RNA expression profile in the 2017 ELN risk classification can improve prognostic prediction of acute myeloid leukemia patients. PMID:30662003
Expression of long non-coding RNA ENSG00000226738 (LncKLHDC7B) is enriched in the immunomodulatory triple-negative breast cancer subtype and its alteration promotes cell migration, invasion, and resistance to cell death. PMID:30648789
Into the Wild: GWAS Exploration of Non-coding RNAs. PMID:30619888
Non-Coding RNAs to Aid in Neurological Prognosis after Cardiac Arrest. PMID:30567385
Analyses of long non-coding RNA and mRNA profiling in the spleen of diarrheic piglets caused by Clostridium perfringens type C. PMID:30533301
Non-coding RNAome of RPE cells under oxidative stress suggests unknown regulative aspects of Retinitis pigmentosa etiopathogenesis. PMID:30413775
The UCSC Genome Browser database: 2019 update. PMID:30407534
Detection of long non-coding RNA homology, a comparative study on alignment and alignment-free metrics. PMID:30400819
RNAcentral: a hub of information for non-coding RNA sequences. PMID:30395267
LNCipedia 5: towards a reference set of human long non-coding RNAs. PMID:30371849
LncBook: a curated knowledgebase of human long non-coding RNAs. PMID:30329098
Long Noncoding RNA Signatures Induced by Toll-Like Receptor 7 and Type I Interferon Signaling in Activated Human Plasmacytoid Dendritic Cells. PMID:30230983
Targeted Genomic Screen Reveals Focal Long Non-Coding RNA Copy Number Alterations in Cancer Cell Lines. PMID:30217017
BC200 (BCYRN1) - The shortest, long, non-coding RNA associated with cancer. PMID:30175286
The State of Long Non-Coding RNA Biology. PMID:30103474
Structural characterization of maternally expressed gene 3 RNA reveals conserved motifs and potential sites of interaction with polycomb repressive complex 2. PMID:30102382
Computational resources associating diseases with genotypes, phenotypes and exposures. PMID:30102366
The emergence of long non-coding RNAs in hepatocellular carcinoma: an update. PMID:30026854
Comprehensive identification of long noncoding RNAs in colorectal cancer. PMID:29963224
LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs. PMID:29961817
Platforms for Investigating LncRNA Functions. PMID:29945466
Public proteomics data: How the field has evolved from sceptical inquiry to the promise of in silico proteomics. PMID:29900110
Towards a complete map of the human long non-coding RNA transcriptome. PMID:29795125
Non-coding RNAs in Various Stages of Liver Disease Leading to Hepatocellular Carcinoma: Differential Expression of miRNAs, piRNAs, lncRNAs, circRNAs, and sno/mt-RNAs. PMID:29789629
MALAT1: a druggable long non-coding RNA for targeted anti-cancer approaches. PMID:29739426
Applicability of Precision Medicine Approaches to Managing Hypertension in Rural Populations. PMID:29710874
A compendium of long non-coding RNAs transcriptional fingerprint in multiple myeloma. PMID:29700321
RNA-seq analysis of lncRNA-controlled developmental gene expression during puberty in goat & rat. PMID:29609543
Identification of key genes and long non‑coding RNAs in celecoxib‑treated lung squamous cell carcinoma cell line by RNA‑sequencing. PMID:29512696
Structural determinants of the SINE B2 element embedded in the long non-coding RNA activator of translation AS Uchl1. PMID:29453387
An epigenomic approach to identifying differential overlapping and cis-acting lncRNAs in cisplatin-resistant cancer cells. PMID:29436261
Long Non-Coding RNAs in Multiple Myeloma. PMID:29389884
The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data. PMID:29386051
Deep Illumina sequencing reveals differential expression of long non-coding RNAs in hyperoxia induced bronchopulmonary dysplasia in a rat model. PMID:29312522
Identification of a novel lncRNA induced by the nephrotoxin ochratoxin A and expressed in human renal tumor tissue. PMID:29282485
LncRNA AK023391 promotes tumorigenesis and invasion of gastric cancer through activation of the PI3K/Akt signaling pathway. PMID:29282102
TRAVeLer: a tool for template-based RNA secondary structure visualization. PMID:29141608
rSNPBase 3.0: an updated database of SNP-related regulatory elements, element-gene pairs and SNP-based gene regulatory networks. PMID:29140525
Trends of long noncoding RNA research from 2007 to 2016: a bibliometric analysis. PMID:29137328
Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease. PMID:29069510
EVLncRNAs: a manually curated database for long non-coding RNAs validated by low-throughput experiments. PMID:28985416
Long non-coding RNAs in B-cell malignancies: a comprehensive overview. PMID:28947998
Small Non-coding RNA Abundance in Adrenocortical Carcinoma: A Footprint of a Rare Cancer. PMID:28943972
The Function and Therapeutic Potential of Long Non-coding RNAs in Cardiovascular Development and Disease. PMID:28918050
Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project. PMID:28853897
Short and Long Noncoding RNAs Regulate the Epigenetic Status of Cells. PMID:28847161
Interaction and cross-talk between non-coding RNAs. PMID:28840253
Regulation of Peripheral Myelination through Transcriptional Buffering of Egr2 by an Antisense Long Non-coding RNA. PMID:28834756
Identification and characterization of a long non-coding RNA up-regulated during HIV-1 infection. PMID:28803142
The non-coding RNA landscape of human hematopoiesis and leukemia. PMID:28794406
Linc-DYNC2H1-4 promotes EMT and CSC phenotypes by acting as a sponge of miR-145 in pancreatic cancer cells. PMID:28703793
DDX11-AS1 as potential therapy targets for human hepatocellular carcinoma. PMID:28496001
The More the Merrier-Complexity in Long Non-Coding RNA Loci. PMID:28487673
Zipper plot: visualizing transcriptional activity of genomic regions. PMID:28464823
A three-lncRNA expression signature associated with the prognosis of gastric cancer patients. PMID:28444881
Dysfunction of the WT1-MEG3 signaling promotes AML leukemogenesis via p53-dependent and -independent pathways. PMID:28400619
A Comprehensive NGS Data Analysis of Differentially Regulated miRNAs, piRNAs, lncRNAs and sn/snoRNAs in Triple Negative Breast Cancer. PMID:28367238
Exploration of small RNA-seq data for small non-coding RNAs in Human Colorectal Cancer. PMID:28348640
A class of circadian long non-coding RNAs mark enhancers modulating long-range circadian gene regulation. PMID:28335007
Screening and evaluating of long noncoding RNAs in the puberty of goats. PMID:28196477
Epigenetic sampling effects: nephrectomy modifies the clear cell renal cell cancer methylome. PMID:28074387
LincSNP 2.0: an updated database for linking disease-associated SNPs to human long non-coding RNAs and their TFBSs. PMID:27924020
The BIG Data Center: from deposition to integration to translation. PMID:27899658
RNAcentral: a comprehensive database of non-coding RNA sequences. PMID:27794554
Novel Genetic Variants for Cartilage Thickness and Hip Osteoarthritis. PMID:27701424
lncRNA profiling in early-stage chronic lymphocytic leukemia identifies transcriptional fingerprints with relevance in clinical outcome. PMID:27611921
Conservation and tissue-specific transcription patterns of long noncoding RNAs. PMID:27335896
Identification of long non-coding RNAs involved in neuronal development and intellectual disability. PMID:27319317
Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic. PMID:27197205
Long non-coding RNAs in normal and malignant hematopoiesis. PMID:27177333
The interplay of long non-coding RNAs and MYC in cancer. PMID:27077133
Comprehensive analysis of lncRNA expression profiles reveals a novel lncRNA signature to discriminate nonequivalent outcomes in patients with ovarian cancer. PMID:27074572
Long non-coding RNA Databases in Cardiovascular Research. PMID:27049585
Retrotransposon-associated long non-coding RNAs in mice and men. PMID:27044413
Systematic characterization of lncRNAs' cell-to-cell expression heterogeneity in glioblastoma cells. PMID:26918340
Distinct lncRNA transcriptional fingerprints characterize progressive stages of multiple myeloma. PMID:26895470
Genome-wide analysis of long non-coding RNAs at early stage of skin pigmentation in goats (Capra hircus). PMID:26785828
Non-coding yet non-trivial: a review on the computational genomics of lincRNAs. PMID:26697116
Proteogenomics from a bioinformatics angle: A growing field. PMID:26670565
Role of microRNAs in Alcohol-Induced Multi-Organ Injury. PMID:26610589
SomamiR 2.0: a database of cancer somatic mutations altering microRNA-ceRNA interactions. PMID:26578591
Long non-coding RNA regulation of reproduction and development. PMID:26517592
rVarBase: an updated database for regulatory features of human variants. PMID:26503253
Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers. PMID:26481356
Epigenetic marks: regulators of livestock phenotypes and conceivable sources of missing variation in livestock improvement programs. PMID:26442116
Devising a Consensus Framework for Validation of Novel Human Coding Loci. PMID:26367542
Co-LncRNA: investigating the lncRNA combinatorial effects in GO annotations and KEGG pathways based on human RNA-Seq data. PMID:26363020
Convergent BCL6 and lncRNA promoters demarcate the major breakpoint region for BCL6 translocations. PMID:26276666
TANRIC: An Interactive Open Platform to Explore the Function of lncRNAs in Cancer. PMID:26208906
Revealing protein-lncRNA interaction. PMID:26041786
The short and long of noncoding sequences in the control of vascular cell phenotypes. PMID:26022065
Long non-coding RNAs and their biological roles in plants. PMID:25936895
The role of piRNA and its potential clinical implications in cancer. PMID:25929784
The Landscape of long noncoding RNA classification. PMID:25869999
LncRNAs in vertebrates: advances and challenges. PMID:25812751
An update on LNCipedia: a database for annotated human lncRNA sequences PubMed citations: 72.

72 articles citing: An update on LNCipedia: a database for annotated human lncRNA sequences

Web tools to perform long non-coding RNAs analysis in oncology research. PMID:34296748
SFPQ promotes an oncogenic transcriptomic state in melanoma. PMID:34218270
Lantern: an integrative repository of functional annotations for lncRNAs in the human genome. PMID:34039271
Highly deregulated lncRNA LOC is associated with overall worse prognosis in Hepatocellular Carcinoma patients. PMID:33976720
Investigation of circulating lncRNAs as potential biomarkers in chronic respiratory diseases. PMID:33168013
Approaching Sex Differences in Cardiovascular Non-Coding RNA Research. PMID:32664454
Placental lncRNA expression associated with placental cadmium concentrations and birth weight. PMID:32411397
Mechanism of long noncoding RNAs as transcriptional regulators in cancer. PMID:31888402
LINC01149 variant modulates MICA expression that facilitates hepatitis B virus spontaneous recovery but increases hepatocellular carcinoma risk. PMID:31754211
BC200 overexpression contributes to luminal and triple negative breast cancer pathogenesis. PMID:31646972
The RNA-binding protein ILF3 binds to transposable element sequences in SINEUP lncRNAs. PMID:31570000
Comprehensive Characterization of Somatic Mutations Impacting lncRNA Expression for Pan-Cancer. PMID:31525663
The nuclear hypoxia-regulated NLUCAT1 long non-coding RNA contributes to an aggressive phenotype in lung adenocarcinoma through regulation of oxidative stress. PMID:31417181
D-lnc: a comprehensive database and analytical platform to dissect the modification of drugs on lncRNA expression. PMID:31390943
SMARTer single cell total RNA sequencing. PMID:31216024
Lnc-ITM2C-1 and GPR55 Are Proviral Host Factors for Hepatitis C Virus. PMID:31200545
Microdeletion of pseudogene chr14.232.a affects LRFN5 expression in cells of a patient with autism spectrum disorder. PMID:31152157
Human skin long noncoding RNA WAKMAR1 regulates wound healing by enhancing keratinocyte migration. PMID:31019085
Analysis of lncRNA Expression in Patients With Eosinophilic and Neutrophilic Asthma Focusing on LNC_000127. PMID:30941157
Comparative Gene Expression Profiles in Parathyroid Adenoma and Normal Parathyroid Tissue. PMID:30832348
Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing. PMID:30702898
ABCA4-associated disease as a model for missing heritability in autosomal recessive disorders: novel noncoding splice, cis-regulatory, structural, and recurrent hypomorphic variants. PMID:30670881
Genome-wide methods for investigating long noncoding RNAs. PMID:30594777
RNA⁻Protein Interactions Prevent Long RNA Duplex Formation: Implications for the Design of RNA-Based Therapeutics. PMID:30558267
ENPD - A Database of Eukaryotic Nucleic Acid Binding Proteins: Linking Gene Regulations to Proteins. PMID:30476229
Mass Spectrometry-Based Proteomics to Unveil the Non-coding RNA World. PMID:30467545
Expression profiling of lncRNAs and mRNAs reveals regulation of muscle growth in the Pacific abalone, Haliotis discus hannai. PMID:30442913
Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers. PMID:30407549
Role of flow-sensitive microRNAs and long noncoding RNAs in vascular dysfunction and atherosclerosis. PMID:30300747
Effect of long non-coding RNA AOC4P on gastrointestinal stromal tumor cells. PMID:30288061
NKX2-1-AS1 negatively regulates CD274/PD-L1, cell-cell interaction genes, and limits human lung carcinoma cell migration. PMID:30258080
Long non-coding RNA H19 regulates endothelial cell aging via inhibition of STAT3 signalling. PMID:30107531
Differential Expression of Coding and Long Noncoding RNAs in Keratoconus-Affected Corneas. PMID:29860458
Gene-gene interaction network analysis of hepatocellular carcinoma using bioinformatic software. PMID:29805571
Molecular mechanisms of long noncoding RNAs and their role in disease pathogenesis. PMID:29719633
Non coding RNA analysis in fibrolamellar hepatocellular carcinoma. PMID:29535801
Long Noncoding RNA Discovery in Cardiovascular Disease: Decoding Form to Function. PMID:29301847
RNAStructuromeDB: A genome-wide database for RNA structural inference. PMID:29222504
Non-coding RNA: a potential biomarker and therapeutic target for sepsis. PMID:29207683
Current Research on Non-Coding Ribonucleic Acid (RNA). PMID:29206165
circlncRNAnet: an integrated web-based resource for mapping functional networks of long or circular forms of noncoding RNAs. PMID:29194536
NONCODEV5: a comprehensive annotation database for long non-coding RNAs. PMID:29140524
Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease. PMID:29069510
A Support Vector Machine based method to distinguish long non-coding RNAs from protein coding transcripts. PMID:29047334
How long noncoding RNAs enforce their will on mitochondrial activity: regulation of mitochondrial respiration, reactive oxygen species production, apoptosis, and metabolic reprogramming in cancer. PMID:28879612
Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project. PMID:28853897
Regions of common inter-individual DNA methylation differences in human monocytes: genetic basis and potential function. PMID:28747224
LncRNA-SARCC suppresses renal cell carcinoma (RCC) progression via altering the androgen receptor(AR)/miRNA-143-3p signals. PMID:28644440
Long Noncoding RNAs as Biomarkers in Cancer. PMID:28634418
LncRNAs: From Basic Research to Medical Application. PMID:28367094
Influence of microRNAs and Long Non-Coding RNAs in Cancer Chemoresistance. PMID:28273813
T-ALL and thymocytes: a message of noncoding RNAs. PMID:28270163
A Golden Age for Working with Public Proteomics Data. PMID:28118949
Long intergenic non-coding RNA 271 is predictive of a poorer prognosis of papillary thyroid cancer. PMID:27833134
The state of play in higher eukaryote gene annotation. PMID:27773922
Differentially Expressed Long Non-Coding RNAs Were Predicted to Be Involved in the Control of Signaling Pathways in Pediatric Astrocytoma. PMID:27738870
LNCediting: a database for functional effects of RNA editing in lncRNAs. PMID:27651464
A critical overview of long non-coding RNA in glioma etiology 2016: an update. PMID:27629290
BmncRNAdb: a comprehensive database of non-coding RNAs in the silkworm, Bombyx mori. PMID:27623959
Well-characterized sequence features of eukaryote genomes and implications for ab initio gene prediction. PMID:27536341
Long non-coding RNAs and complex diseases: from experimental results to computational models. PMID:27345524
IntNetLncSim: an integrative network analysis method to infer human lncRNA functional similarity. PMID:27323856
Long Non-coding RNA in Neurons: New Players in Early Response to BDNF Stimulation. PMID:26973456
Long non-coding RNAs as prognostic markers in human breast cancer. PMID:26942882
PRINS, a primate-specific long non-coding RNA, plays a role in the keratinocyte stress response and psoriasis pathogenesis. PMID:26935426
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. PMID:26612864
NONCODE 2016: an informative and valuable data source of long non-coding RNAs. PMID:26586799
Progress and Current Challenges in Modeling Large RNAs. PMID:26585404
Long non-coding RNA regulation of reproduction and development. PMID:26517592
rVarBase: an updated database for regulatory features of human variants. PMID:26503253
Exploring the potential of public proteomics data. PMID:26449181
SINEUPs: A new class of natural and synthetic antisense long non-coding RNAs that activate translation. PMID:26259533
http://dx.doi.org/10.1093/nar/gku1060

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long non-coding rna
metasource: Fairsharing.org
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long non-coding ribonucleic acid
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micro rna (mirna) target site
metasource: Fairsharing.org
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rna sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

data mining
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:21.334586

gene structure
metasource: bio.tools
version: extracted_at: 2022-11-04T11:35:21.334586

long non-coding rna long non-coding ribonucleic acid micro rna (mirna) target site rna sequence data mining gene structure

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