Annmap
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Annmap is a genome browser that includes mappings between genomic features and Affymetrix microarrays. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
Description
More detailed information about this field from each metasource.
Annmap is a genome browser that includes mappings between genomic features and Affymetrix microarrays. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
metasource: Fairsharing.orgversion: FAIRsharing.org: Annmap; Annmap; DOI: https://doi.org/10.25504/FAIRsharing.f8qafw; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Webpage:
http://annmap.cruk.manchester.ac.uk/Webpage
More detailed information about this field from each metasource.
http://annmap.cruk.manchester.ac.uk/
metasource: Fairsharing.orgversion: FAIRsharing.org: Annmap; Annmap; DOI: https://doi.org/10.25504/FAIRsharing.f8qafw; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis
PMID: 17932061
metasource: Fairsharing.org
version: FAIRsharing.org: Annmap; Annmap; DOI: https://doi.org/10.25504/FAIRsharing.f8qafw; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis
PMID: 17932061
metasource: Fairsharing.org
version: FAIRsharing.org: Annmap; Annmap; DOI: https://doi.org/10.25504/FAIRsharing.f8qafw; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis
PubMed citations: 48.
48 articles citing: X:Map: annotation and visualization of genome structure for Affymetrix exon array analysis
Expression Changes Confirm Genomic Variants Predicted to Result in Allele-Specific, Alternative mRNA Splicing. PMID:32211018
In silico prediction of housekeeping long intergenic non-coding RNAs reveals HKlincR1 as an essential player in lung cancer cell survival. PMID:31089191
Visual Analytics of Genomic and Cancer Data: A Systematic Review. PMID:30890859
Epstein-Barr Virus (EBV) Latent Protein EBNA3A Directly Targets and Silences the STK39 Gene in B Cells Infected by EBV. PMID:29367247
Hypoxia-driven splicing into noncoding isoforms regulates the DNA damage response. PMID:28480052
AnGeLi: A Tool for the Analysis of Gene Lists from Fission Yeast. PMID:26635866
Novel RNA variants in colorectal cancers. PMID:26474385
Seq-ing improved gene expression estimates from microarrays using machine learning. PMID:26338512
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future. PMID:26309733
ImmuSort, a database on gene plasticity and electronic sorting for immune cells. PMID:25988315
Mimoza: web-based semantic zooming and navigation in metabolic networks. PMID:25889977
Gene expression in transformed lymphocytes reveals variation in endomembrane and HLA pathways modifying cystic fibrosis pulmonary phenotypes. PMID:25640674
Computational extraction of a neural molecular network through alternative splicing. PMID:25523101
Evaluation and validation of a robust single cell RNA-amplification protocol through transcriptional profiling of enriched lung cancer initiating cells. PMID:25519510
Epithelial and stromal microRNA signatures of columnar cell hyperplasia linking Let-7c to precancerous and cancerous breast cancer cell proliferation. PMID:25122196
Tumorigenicity and genetic profiling of circulating tumor cells in small-cell lung cancer. PMID:24880617
A global non-coding RNA system modulates fission yeast protein levels in response to stress. PMID:24853205
Investigation of radiosensitivity gene signatures in cancer cell lines. PMID:24466029
Unraveling genomic variation from next generation sequencing data. PMID:23885890
Genome Maps, a new generation genome browser. PMID:23748955
What Google Maps can do for biomedical data dissemination: examples and a design study. PMID:23642009
Isoform level expression profiles provide better cancer signatures than gene level expression profiles. PMID:23594586
Induction of p16(INK4a) is the major barrier to proliferation when Epstein-Barr virus (EBV) transforms primary B cells into lymphoblastoid cell lines. PMID:23436997
Enhanced stability of microRNA expression facilitates classification of FFPE tumour samples exhibiting near total mRNA degradation. PMID:22805332
CBrowse: a SAM/BAM-based contig browser for transcriptome assembly visualization and analysis. PMID:22789590
Programmed fluctuations in sense/antisense transcript ratios drive sexual differentiation in S. pombe. PMID:22186733
Comprehensive exon array data processing method for quantitative analysis of alternative spliced variants. PMID:21745820
Computational detection of alternative exon usage. PMID:21625610
rnaSeqMap: a Bioconductor package for RNA sequencing data exploration. PMID:21612622
U1 adaptors result in reduction of multiple pre-mRNA species principally by sequestering U1snRNP. PMID:21415007
Exon-array profiling unlocks clinically and biologically relevant gene signatures from formalin-fixed paraffin-embedded tumour samples. PMID:21407225
Dalliance: interactive genome viewing on the web. PMID:21252075
Genome-wide analysis of alternative splicing in medulloblastoma identifies splicing patterns characteristic of normal cerebellar development. PMID:21248070
Exon array analysis using re-defined probe sets results in reliable identification of alternatively spliced genes in non-small cell lung cancer. PMID:21118496
Integration and visualization of systems biology data in context of the genome. PMID:20642854
AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. PMID:20513647
A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling. PMID:20444259
GATExplorer: genomic and transcriptomic explorer; mapping expression probes to gene loci, transcripts, exons and ncRNAs. PMID:20429936
Visualizing genomes: techniques and challenges. PMID:20195257
Expression map of the human exome in CD34+ cells and blood cells: increased alternative splicing in cell motility and immune response genes. PMID:20126548
Exon array analysis of head and neck cancers identifies a hypoxia related splice variant of LAMA3 associated with a poor prognosis. PMID:19936049
hnRNP A2 regulates alternative mRNA splicing of TP53INP2 to control invasive cell migration. PMID:19934309
PLANdbAffy: probe-level annotation database for Affymetrix expression microarrays. PMID:19906711
MMBGX: a method for estimating expression at the isoform level and detecting differential splicing using whole-transcript Affymetrix arrays. PMID:19854940
JBrowse: a next-generation genome browser. PMID:19570905
GenomeGraphs: integrated genomic data visualization with R. PMID:19123956
SNUGB: a versatile genome browser supporting comparative and functional fungal genomics. PMID:19055845
easyExon--a Java-based GUI tool for processing and visualization of Affymetrix exon array data. PMID:18851762
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dna microarray
metasource: Fairsharing.org
version: FAIRsharing.org: Annmap; Annmap; DOI: https://doi.org/10.25504/FAIRsharing.f8qafw; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: Annmap; Annmap; DOI: https://doi.org/10.25504/FAIRsharing.f8qafw; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Tags
More detailed information about this field from each metasource.
dna microarray
metasource: Fairsharing.orgversion: FAIRsharing.org: Annmap; Annmap; DOI: https://doi.org/10.25504/FAIRsharing.f8qafw; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: Annmap; Annmap; DOI: https://doi.org/10.25504/FAIRsharing.f8qafw; Last edited: June 25, 2021, 2:44 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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