Integrated resource of protein families, domains and functional sites
Names
More detailed information about this field from each metasource.
Integrated resource of protein families, domains and functional sites
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
InterPro
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2021-04-07T11:50:35.288810
metasource: re3data.org
version: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
metasource: bio.tools
version: extracted_at: 2021-04-07T11:58:53.038455
protein sequence analysis & classification
metasource: re3data.org
version: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
interpro
metasource: bio.tools
version: extracted_at: 2021-04-07T11:58:53.038455
Names
More detailed information about this field from each metasource.
Integrated resource of protein families, domains and functional sites
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
InterPro
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2021-04-07T11:50:35.288810
metasource: re3data.org
version: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
metasource: bio.tools
version: extracted_at: 2021-04-07T11:58:53.038455
protein sequence analysis & classification
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
interpro
metasource: bio.toolsversion: extracted_at: 2021-04-07T11:58:53.038455
Other names: InterPro, protein sequence analysis & classification, interpro
Names
More detailed information about this field from each metasource.
Integrated resource of protein families, domains and functional sites
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
InterPro
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2021-04-07T11:50:35.288810
metasource: re3data.org
version: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
metasource: bio.tools
version: extracted_at: 2021-04-07T11:58:53.038455
protein sequence analysis & classification
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
interpro
metasource: bio.toolsversion: extracted_at: 2021-04-07T11:58:53.038455
InterPro is a resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this way, InterPro uses predictive models, known as signatures, provided by several different databases (referred to as member databases) that make up the InterPro consortium.
Description
More detailed information about this field from each metasource.
InterPro is a resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this way, InterPro uses predictive models, known as signatures, provided by several different databases (referred to as member databases) that make up the InterPro consortium.
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
The InterPro database (https://www.ebi.ac.uk/interpro/) provides an integrative classification of protein sequences into families, and identifies functionally important domains and conserved sites. InterProScan is the underlying software that allows protein and nucleic acid sequences to be searched against InterPro's signatures. Signatures are predictive models which describe protein families, domains or sites, and are provided by multiple databases. InterPro combines signatures representing equivalent families, domains or sites, and provides additional information such as descriptions, literature references and Gene Ontology (GO) terms, to produce a comprehensive resource for protein classification. Founded in 1999, InterPro has become one of the most widely used resources for protein family annotation. Here, we report the status of InterPro (version 81.0) in its 20th year of operation, and its associated software, including updates to database content, the release of a new website and REST API, and performance improvements in InterProScan.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
InterPro collects information about protein sequence analysis and classification, providing access to a database of predictive protein signatures used for the classification and automatic annotation of proteins and genomes. Sequences in InterPro are classified at superfamily, family, and subfamily. InterPro predicts the occurrence of functional domains, repeats, and important sites, and adds in-depth annotation such as GO terms to the protein signatures.
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
Protein families, domains, regions, repeats and sites in which identifiable features found in known proteins can be applied to new protein sequences.
metasource: bio.toolsversion: extracted_at: 2021-04-07T11:58:53.038455
Webpage:
https://www.ebi.ac.uk/interproWebpage
More detailed information about this field from each metasource.
https://www.ebi.ac.uk/interpro
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
http://www.ebi.ac.uk/interpro
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
http://www.ebi.ac.uk/interpro/beta/
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
http://www.ebi.ac.uk/interpro/
metasource: bio.toolsversion: extracted_at: 2021-04-07T11:58:53.038455
Licence:
Name: Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0Licence name
More detailed information about this field from each metasource.
Open Data Commons (ODC) Public Domain Dedication and Licence (PDDL) 1.0
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
Public Domain
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
Licence URL
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http://opendatacommons.org/licenses/pddl/1.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
https://www.ebi.ac.uk/about/terms-of-use
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
Publications:
Publications
More detailed information about this field from each metasource.
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
PMID: 30398656
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
InterPro, progress and status in 2005
PMID: 15608177
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
http://dx.doi.org/10.1093/nar/gkaa977
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2021-04-07T11:50:35.288810
http://dx.doi.org/10.1093/nar/gkw1107
metasource: bio.tools
version: extracted_at: 2021-04-07T11:58:53.038455
Publications
More detailed information about this field from each metasource.
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
PMID: 30398656
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
InterPro, progress and status in 2005
PMID: 15608177
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
http://dx.doi.org/10.1093/nar/gkaa977
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
http://dx.doi.org/10.1093/nar/gkw1107
metasource: bio.toolsversion: extracted_at: 2021-04-07T11:58:53.038455
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InterPro in 2019: improving coverage, classification and access to protein sequence annotations
PubMed citations: 321.
321 articles citing: InterPro in 2019: improving coverage, classification and access to protein sequence annotations
CE16 acetylesterases: in silico analysis, catalytic machinery prediction and comparison with related SGNH hydrolases. PMID:33505839
Genome-Wide Identification and Analysis of Chitinase GH18 Gene Family in Mycogone perniciosa. PMID:33505368
Porphyromonas gingivalis fimbrial protein Mfa5 contains a von Willebrand factor domain and an intramolecular isopeptide. PMID:33495563
Computing Cellulase Kinetics with a Two-Domain Linear Interaction Energy Approach. PMID:33490814
The impact of genetic diversity on gene essentiality within the Escherichia coli species. PMID:33462433
Structural Insights into Ankyrin Repeat-Containing Proteins and Their Influence in Ubiquitylation. PMID:33435370
MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes. PMID:33407081
Improved metagenome binning and assembly using deep variational autoencoders. PMID:33398153
Efflux identification and engineering for ansamitocin P-3 production in Actinosynnema pretiosum. PMID:33394151
Mutation Frequency in Main Susceptibility Genes Among Patients With Head and Neck Paragangliomas. PMID:33391357
De novo ZIC2 frameshift variant associated with frontonasal dysplasia in a Limousin calf. PMID:33388042
Zone of Interaction Between the Parasite and the Host: Protein Profile of the Body Cavity Fluid of Gasterosteus aculeatus L. Infected with the Cestode Schistocephalus solidus (Muller, 1776). PMID:33387269
Defining the 'HoneySweet' insertion event utilizing NextGen sequencing and a de novo genome assembly of plum (Prunus domestica). PMID:33384410
Insight into the bZIP Gene Family in Solanum tuberosum: Genome and Transcriptome Analysis to Understand the Roles of Gene Diversification in Spatiotemporal Gene Expression and Function. PMID:33383823
Genetic and genomic resources to study natural variation in Brassica rapa. PMID:33364543
Heteroexpression of Aspergillus nidulans laeA in Marine-Derived Fungi Triggers Upregulation of Secondary Metabolite Biosynthetic Genes. PMID:33352941
Novel perspectives of target-binding by the evolutionarily conserved PP4 phosphatase. PMID:33352067
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies. PMID:33348379
Dehydroquinate dehydratase/shikimate dehydrogenases involved in gallate biosynthesis of the aluminum-tolerant tree species Eucalyptus camaldulensis. PMID:33346890
Furin cleavage sites naturally occur in coronaviruses. PMID:33340798
Metabolic Contributions of an Alphaproteobacterial Endosymbiont in the Apicomplexan Cardiosporidium cionae. PMID:33335517
Serum amyloid A is a positive acute phase protein in Russian sturgeon challenged with Aeromonas hydrophila. PMID:33335147
Biological and Genomic Characterization of a Novel Jumbo Bacteriophage, vB_VhaM_pir03 with Broad Host Lytic Activity against Vibrio harveyi. PMID:33333990
Polymer Adhesin Domains in Gram-Positive Cell Surface Proteins. PMID:33324381
Deciphering the functional role of hypothetical proteins from Chloroflexus aurantiacs J-10-f1 using bioinformatics approach. PMID:33313333
PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins. PMID:33305318
Computational methods for detecting cancer hotspots. PMID:33304455
Genomic Analysis of Natural Rough Brucella melitensis Rev.1 Vaccine Strains: Identification and Characterization of Mutations in Key Genes Associated with Bacterial LPS Biosynthesis and Virulence. PMID:33302421
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API. PMID:33290554
Histone variants in archaea and the evolution of combinatorial chromatin complexity. PMID:33288720
Systematic prediction of genes functionally associated with bacterial retrons and classification of the encoded tripartite systems. PMID:33275130
CCDC66 frameshift variant associated with a new form of early-onset progressive retinal atrophy in Portuguese Water Dogs. PMID:33273526
Towards a unified open access dataset of molecular interactions. PMID:33262342
The Draft Genome of Red Lechwe, Kobus leche leche. PMID:33250921
Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. PMID:33246485
MobiDB: intrinsically disordered proteins in 2021. PMID:33237329
RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures. PMID:33237313
The STRING database in 2021: customizable protein-protein networks, and functional characterization of user-uploaded gene/measurement sets. PMID:33237311
GreenPhylDB v5: a comparative pangenomic database for plant genomes. PMID:33237299
UniProt: the universal protein knowledgebase in 2021. PMID:33237286
Expression of Pro-Angiogenic Markers Is Enhanced by Blue Light in Human RPE Cells. PMID:33233546
Additions to the genus Gimesia: description of Gimesia alba sp. nov., Gimesia algae sp. nov., Gimesia aquarii sp. nov., Gimesia aquatilis sp. nov., Gimesia fumaroli sp. nov. and Gimesia panareensis sp. nov., isolated from aquatic habitats of the Northern Hemisphere. PMID:33231764
Comparative analyses and structural insights of new class glutathione transferases in Cryptosporidium species. PMID:33230237
BRENDA, the ELIXIR core data resource in 2021: new developments and updates. PMID:33211880
DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations. PMID:33209251
A combined transcriptomic approach to identify candidates for an anti-tick vaccine blocking B. afzelii transmission. PMID:33208766
E3 Ubiquitin Ligase TRIP12: Regulation, Structure, and Physiopathological Functions. PMID:33198194
OrthoDB in 2020: evolutionary and functional annotations of orthologs. PMID:33196836
Inhibition of DNA Methylation in Picochlorum soloecismus Alters Algae Productivity. PMID:33193644
MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database. PMID:33193550
Characterization of a Metal-Resistant Bacillus Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation. PMID:33193240
Structure of the human core transcription-export complex reveals a hub for multivalent interactions. PMID:33191911
Comparative Genomics Platform and Phylogenetic Analysis of Fungal Laccases and Multi-Copper Oxidases. PMID:33177916
Isolation and Characterization of Bacillus cereus Phage vB_BceP-DLc1 Reveals the Largest Member of the Φ29-Like Phages. PMID:33171789
COG database update: focus on microbial diversity, model organisms, and widespread pathogens. PMID:33167031
First draft genome assembly of the desert locust, Schistocerca gregaria. PMID:33163158
The InterPro protein families and domains database: 20 years on. PMID:33156333
Updates to the recently introduced family Lacipirellulaceae in the phylum Planctomycetes: isolation of strains belonging to the novel genera Aeoliella, Botrimarina, Pirellulimonas and Pseudobythopirellula and the novel species Bythopirellula polymerisocia and Posidoniimonas corsicana. PMID:33151460
Phylogenetic Analysis of Filifactor alocis Strains Isolated from Several Oral Infections Identified a Novel RTX Toxin, FtxA. PMID:33143036
Pfam: The protein families database in 2021. PMID:33125078
Bi-Allelic Novel Variants in CLIC5 Identified in a Cameroonian Multiplex Family with Non-Syndromic Hearing Impairment. PMID:33114113
Prometheus, an omics portal for interkingdom comparative genomic analyses. PMID:33112870
Spatiotemporal identification of druggable binding sites using deep learning. PMID:33110179
Comprehensive characterization of amino acid positions in protein structures reveals molecular effect of missense variants. PMID:33106425
Uncovering the Cyclic AMP Signaling Pathway of the Protozoan Parasite Entamoeba histolytica and Understanding Its Role in Phagocytosis. PMID:33102254
Tools of the trade: studying actin in zebrafish. PMID:33095903
Arginine-Rich Small Proteins with a Domain of Unknown Function, DUF1127, Play a Role in Phosphate and Carbon Metabolism of Agrobacterium tumefaciens. PMID:33093235
Shrinking of repeating unit length in leucine-rich repeats from double-stranded DNA viruses. PMID:33052487
Exploration into biomarker potential of region-specific brain gene co-expression networks. PMID:33051491
The role of selection in the evolution of marine turtles mitogenomes. PMID:33046778
Evolutionary aspects of the Viridiplantae nitroreductases. PMID:33025290
The reuse of public datasets in the life sciences: potential risks and rewards. PMID:33024631
Coding transcriptome analyses reveal altered functions underlying immunotolerance of PEG-fused rat sciatic nerve allografts. PMID:33008419
Differential network analysis of bovine muscle reveals changes in gene coexpression patterns in response to changes in maternal nutrition. PMID:33008289
High-quality nuclear genome for Sarcoptes scabiei-A critical resource for a neglected parasite. PMID:33001992
Ectopic Expression of the Transcriptional Regulator silky3 Causes Pleiotropic Meristem and Sex Determination Defects in Maize Inflorescences. PMID:32989171
Characterization and engineering of a two-enzyme system for plastics depolymerization. PMID:32989159
The E3 ubiquitin-protein ligase MDM2 is a novel interactor of the von Hippel-Lindau tumor suppressor. PMID:32985545
Expression of an Extracellular Protein (SMU.63) Is Regulated by SprV in Streptococcus mutans. PMID:32978138
Immunohistochemistry and Mutation Analysis of SDHx Genes in Carotid Paragangliomas. PMID:32971818
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing. PMID:32962098
Genome-Wide Screening and Characterization of Non-Coding RNAs in Coffea canephora. PMID:32932872
Forensic genomics of a novel Klebsiella quasipneumoniae type from a neonatal intensive care unit in China reveals patterns of colonization, evolution and epidemiology. PMID:32931409
Multi-omic studies on missense PLG variants in families with otitis media. PMID:32929111
Selective Inhibition of Coxiella burnetii Replication by the Steroid Hormone Progesterone. PMID:32928965
Comparative analyses of saprotrophy in Salisapilia sapeloensis and diverse plant pathogenic oomycetes reveal lifestyle-specific gene expression. PMID:32918444
Estimating the quality of eukaryotic genomes recovered from metagenomic analysis with EukCC. PMID:32912302
An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice. PMID:32899740
Valproic acid treatment rescues injured tissues after traumatic brain injury. PMID:32890344
Transcription Profile and Genomic Variations of Oryctes Rhinoceros Nudivirus in Coconut Rhinoceros Beetles. PMID:32878889
Plant expression of NifD protein variants resistant to mitochondrial degradation. PMID:32868448
High-Quality Assemblies for Three Invasive Social Wasps from the Vespula Genus. PMID:32859687
Establishment of Proximity-Dependent Biotinylation Approaches in Different Plant Model Systems. PMID:32843435
Short, Rich, and Powerful: a New Family of Arginine-Rich Small Proteins Have Outsized Impact in Agrobacterium tumefaciens. PMID:32839178
Integrative genomics analysis identifies five promising genes implicated in insomnia risk based on multiple omics datasets. PMID:32830860
FLAVi: An Enhanced Annotator for Viral Genomes of Flaviviridae. PMID:32824044
Chromosome-scale genome assembly of sweet cherry (Prunus avium L.) cv. Tieton obtained using long-read and Hi-C sequencing. PMID:32821405
Kiwifruit Genome Database (KGD): a comprehensive resource for kiwifruit genomics. PMID:32821400
An autoregulatory switch in sex-specific phf7 transcription causes loss of sexual identity and tumors in the Drosophila female germline. PMID:32816970
Post-translational formation of strained cyclophanes in bacteria. PMID:32807886
S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM. PMID:32787778
Characterization of a SPM-1 metallo-beta-lactamase-producing Pseudomonas aeruginosa by comparative genomics and phenotypic analysis. PMID:32764694
The Arabidopsis RboHB Encoded by At1g09090 Is Important for Resistance against Nematodes. PMID:32756498
Integration of the pSLT Plasmid into the Salmonella Chromosome Results in a Temperature-Sensitive Growth Defect Due to Aberrant DNA Replication. PMID:32747428
Defining the transcriptional responses of Aspergillus nidulans to cation/alkaline pH stress and the role of the transcription factor SltA. PMID:32735212
Chemical structure and genetic organization of the E. coli O6:K15 capsular polysaccharide. PMID:32724125
Genome Analysis of Two Novel Synechococcus Phages That Lack Common Auxiliary Metabolic Genes: Possible Reasons and Ecological Insights by Comparative Analysis of Cyanomyoviruses. PMID:32722486
Lysin LysMK34 of Acinetobacter baumannii Bacteriophage PMK34 Has a Turgor Pressure-Dependent Intrinsic Antibacterial Activity and Reverts Colistin Resistance. PMID:32709718
Araport Lives: An Updated Framework for Arabidopsis Bioinformatics. PMID:32699173
Systematic mapping of genetic interactions for de novo fatty acid synthesis identifies C12orf49 as a regulator of lipid metabolism. PMID:32694731
Molecular characterization and gene expression modulation of the alternative oxidase in a scuticociliate parasite by hypoxia and mitochondrial respiration inhibitors. PMID:32681023
Expansions and contractions in gene families of independently-evolved blood-feeding insects. PMID:32680460
UXT in Sertoli cells is required for blood-testis barrier integrity†. PMID:32678429
Characterization of the Role of a Non-GPCR Membrane-Bound CFEM Protein in the Pathogenicity and Germination of Botrytis cinerea. PMID:32674341
Identification and sub-cellular localization of a NAD transporter in Leishmania braziliensis (LbNDT1). PMID:32671255
Biofilm and Pathogenesis-Related Proteins in the Foodborne P. fluorescens ITEM 17298 With Distinctive Phenotypes During Cold Storage. PMID:32670211
Prognostic alternative mRNA splicing signatures and associated splicing factors in acute myeloid leukemia. PMID:32653835
VviERF6Ls: an expanded clade in Vitis responds transcriptionally to abiotic and biotic stresses and berry development. PMID:32646368
The Intrinsically Disordered Protein CARP9 Bridges HYL1 to AGO1 in the Nucleus to Promote MicroRNA Activity. PMID:32636339
Rosistilla oblonga gen. nov., sp. nov. and Rosistilla carotiformis sp. nov., isolated from biotic or abiotic surfaces in Northern Germany, Mallorca, Spain and California, USA. PMID:32623658
Butyrate producing colonic Clostridiales metabolise human milk oligosaccharides and cross feed on mucin via conserved pathways. PMID:32620774
The bottromycin epimerase BotH defines a group of atypical α/β-hydrolase-fold enzymes. PMID:32601484
Fulvic acid increases forage legume growth inducing preferential up-regulation of nodulation and signalling-related genes. PMID:32599619
Environmental Enrichment Improved Learning and Memory, Increased Telencephalic Cell Proliferation, and Induced Differential Gene Expression in Colossoma macropomum. PMID:32595498
The C962R ORF of African Swine Fever Strain Georgia Is Non-Essential and Not Required for Virulence in Swine. PMID:32585808
Maioricimonas rarisocia gen. nov., sp. nov., a novel planctomycete isolated from marine sediments close to Mallorca Island. PMID:32583192
Thalassoglobus polymorphus sp. nov., a novel Planctomycete isolated close to a public beach of Mallorca Island. PMID:32583191
A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community). PMID:32566135
Molecular insights into the powerful mucus-based adhesion of limpets (Patella vulgata L.). PMID:32543352
Involvement of Chromosomally Encoded Homologs of the RRNPP Protein Family in Enterococcus faecalis Biofilm Formation and Urinary Tract Infection Pathogenesis. PMID:32540933
Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genome. PMID:32537769
Exploration of Two Pectate Lyases from Caldicellulosiruptor bescii Reveals that the CBM66 Module Has a Crucial Role in Pectic Biomass Degradation. PMID:32532871
Adaptive evolution among cytoplasmic piRNA proteins leads to decreased genomic auto-immunity. PMID:32525870
The Prediction of miRNAs in SARS-CoV-2 Genomes: hsa-miR Databases Identify 7 Key miRs Linked to Host Responses and Virus Pathogenicity-Related KEGG Pathways Significant for Comorbidities. PMID:32512929
Defining Critical Genes During Spherule Remodeling and Endospore Development in the Fungal Pathogen, Coccidioides posadasii. PMID:32499817
Structural studies of geranylgeranylglyceryl phosphate synthase, a prenyltransferase found in thermophilic Euryarchaeota. PMID:32496216
Comparative transcriptomics of an arctic foundation species, tussock cottongrass (Eriophorum vaginatum), during an extreme heat event. PMID:32488082
A Novel Inducible Prophage from Burkholderia Vietnamiensis G4 is Widely Distributed across the Species and Has Lytic Activity against Pathogenic Burkholderia. PMID:32486377
Characterization of the Porcine CLEC12A and Analysis of Its Expression on Blood Dendritic Cell Subsets. PMID:32477350
dbPSP 2.0, an updated database of protein phosphorylation sites in prokaryotes. PMID:32472030
H3.3 Nucleosome Assembly Mutants Display a Late-Onset Maternal Effect. PMID:32470364
The DNA methylation landscape of giant viruses. PMID:32461636
Heavy Metal Stress-Associated Proteins in Rice and Arabidopsis: Genome-Wide Identification, Phylogenetics, Duplication, and Expression Profiles Analysis. PMID:32457808
The Whole-Genome Sequencing and Hybrid Assembly of Mytilus coruscus. PMID:32457802
The Pheromone Module SteC-MkkB-MpkB-SteD-HamE Regulates Development, Stress Responses and Secondary Metabolism in Aspergillus fumigatus. PMID:32457716
MicrobioLink: An Integrated Computational Pipeline to Infer Functional Effects of Microbiome-Host Interactions. PMID:32455748
A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function. PMID:32449511
Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera. PMID:32442304
The Biotechnological Potential of the Marine Diatom Skeletonema dohrnii to the Elevated Temperature and pCO2 Concentration. PMID:32429035
Decoding the vital segments in human ATP-dependent RNA helicase. PMID:32405168
UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase. PMID:32399560
DNA Variant in the RPGRIP1L Gene Influences Alternative Splicing. PMID:32399473
Functional Characterisation of the Autophagy ATG12~5/16 Complex in Dictyostelium discoideum. PMID:32397394
Genome-wide association study leads to novel genetic insights into resistance to Aspergillus flavus in maize kernels. PMID:32393173
The Protector within: Comparative Genomics of APSE Phages across Aphids Reveals Rampant Recombination and Diverse Toxin Arsenals. PMID:32386316
ECMPride: prediction of human extracellular matrix proteins based on the ideal dataset using hybrid features with domain evidence. PMID:32377454
Hypogonadotropic hypogonadism due to variants in RAB3GAP2: expanding the phenotypic and genotypic spectrum of Martsolf syndrome. PMID:32376645
Honey-bee-associated prokaryotic viral communities reveal wide viral diversity and a profound metabolic coding potential. PMID:32341166
Hyd ubiquitinates the NF-κB co-factor Akirin to operate an effective immune response in Drosophila. PMID:32339205
Deep conservation of prion-like composition in the eukaryotic prion-former Pub1/Tia1 family and its relatives. PMID:32337108
Aspartate aminotransferase Rv3722c governs aspartate-dependent nitrogen metabolism in Mycobacterium tuberculosis. PMID:32327655
Novel Target Exploration from Hypothetical Proteins of Klebsiella pneumoniae MGH 78578 Reveals a Protein Involved in Host-Pathogen Interaction. PMID:32318354
Fold-Change-Specific Enrichment Analysis (FSEA): Quantification of Transcriptional Response Magnitude for Functional Gene Groups. PMID:32316383
Pathological, Morphological, Cytogenomic, Biochemical and Molecular Data Support the Distinction between Colletotrichum cigarro comb. et stat. nov. and Colletotrichum kahawae. PMID:32295225
Unraveling 1,4-Butanediol Metabolism in Pseudomonas putida KT2440. PMID:32256468
MaveQuest: a web resource for planning experimental tests of human variant effects. PMID:32251504
High expression in maize pollen correlates with genetic contributions to pollen fitness as well as with coordinated transcription from neighboring transposable elements. PMID:32236090
Type II and type IV toxin-antitoxin systems show different evolutionary patterns in the global Klebsiella pneumoniae population. PMID:32232417
Grad-seq in a Gram-positive bacterium reveals exonucleolytic sRNA activation in competence control. PMID:32227509
Genome analysis of cellulose and hemicellulose degrading Micromonospora sp. CP22. PMID:32206494
High Resolution Mapping of a Hordeum bulbosum-Derived Powdery Mildew Resistance Locus in Barley Using Distinct Homologous Introgression Lines. PMID:32194602
Elevated pCO2 Level Affects the Extracellular Polymer Metabolism of Phaeodactylum tricornutum. PMID:32194534
Klebsiella pneumoniae type VI secretion system-mediated microbial competition is PhoPQ controlled and reactive oxygen species dependent. PMID:32191774
LRRpredictor-A New LRR Motif Detection Method for Irregular Motifs of Plant NLR Proteins Using an Ensemble of Classifiers. PMID:32182725
Wikidata as a knowledge graph for the life sciences. PMID:32180547
Draft genomes of female and male turbot Scophthalmus maximus. PMID:32165614
Phylogenetics Identifies Two Eumetazoan TRPM Clades and an Eighth TRP Family, TRP Soromelastatin (TRPS). PMID:32159767
A Uniquely Complex Mitochondrial Proteome from Euglena gracilis. PMID:32159766
Isolation and Characterization of the Novel Phages vB_VpS_BA3 and vB_VpS_CA8 for Lysing Vibrio parahaemolyticus. PMID:32153543
Comprehensive analyses of the annexin (ANN) gene family in Brassica rapa, Brassica oleracea and Brassica napus reveals their roles in stress response. PMID:32152363
Mechanism of cargo recognition by retromer-linked SNX-BAR proteins. PMID:32150533
BarleyNet: A Network-Based Functional Omics Analysis Server for Cultivated Barley, Hordeum vulgare L. PMID:32133024
Range-wide neutral and adaptive genetic structure of an endemic herb from Amazonian Savannas. PMID:32128104
Evolution of metabolic capabilities and molecular features of diplonemids, kinetoplastids, and euglenids. PMID:32122335
Arabidopsis RanBP2-Type Zinc Finger Proteins Related to Chloroplast RNA Editing Factor OZ1. PMID:32121603
Whole-Genome Sequencing of Lactobacillus helveticus D75 and D76 Confirms Safety and Probiotic Potential. PMID:32111071
Two New Alginate Lyases of PL7 and PL6 Families from Polysaccharide-Degrading Bacterium Formosa algae KMM 3553T: Structure, Properties, and Products Analysis. PMID:32102373
Phenotypic expansion of KMT2D-related disorder: Beyond Kabuki syndrome. PMID:32083401
The tetrameric pheromone module SteC-MkkB-MpkB-SteD regulates asexual sporulation, sclerotia formation and aflatoxin production in Aspergillus flavus. PMID:32068947
Wheat PP2C-a10 regulates seed germination and drought tolerance in transgenic Arabidopsis. PMID:32065246
Parallel quorum-sensing system in Vibrio cholerae prevents signal interference inside the host. PMID:32059031
Antibiotics from Haloarchaea: What Can We Learn from Comparative Genomics? PMID:32048095
The identification of tick autophagy-related genes in Ixodes scapularis responding to amino acid starvation. PMID:32035896
HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes. PMID:32034905
High-resolution structural insights into the heliorhodopsin family. PMID:32034096
Non-intrinsic ATP-binding cassette proteins ABCI19, ABCI20 and ABCI21 modulate cytokinin response at the endoplasmic reticulum in Arabidopsis thaliana. PMID:32016506
Insect Mouthpart Transcriptome Unveils Extension of Cuticular Protein Repertoire and Complex Organization. PMID:32000126
Symbiotic lifestyle triggers drastic changes in the gene expression of the algal endosymbiont Breviolum minutum (Symbiodiniaceae). PMID:31993121
Biobtree: A tool to search, map and visualize bioinformatics identifiers and special keywords. PMID:31984130
Biosynthesis of Nitrogenase Cofactors. PMID:31975585
The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences. PMID:31950984
Annotated Genome Sequence of Aspergillus tanneri NIH1004. PMID:31948962
The Tip of the VgrG Spike Is Essential to Functional Type VI Secretion System Assembly in Acinetobacter baumannii. PMID:31937641
Antimicrobial Activity of Protein Fraction from Naja ashei Venom Against Staphylococcus epidermidis. PMID:31936872
Gene copy number and function of the APL1 immune factor changed during Anopheles evolution. PMID:31931885
Construction of asthma related competing endogenous RNA network revealed novel long non-coding RNAs and potential new drugs. PMID:31924195
Comparative Genomics Analysis of Ciliates Provides Insights on the Evolutionary History Within "Nassophorea-Synhymenia-Phyllopharyngea" Assemblage. PMID:31921016
Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products. PMID:31900122
A systems biology approach reveals neuronal and muscle developmental defects after chronic exposure to ionising radiation in zebrafish. PMID:31882844
Decrypting tubby-like protein gene family of multiple functions in starch root crop cassava. PMID:31871614
Genetic Determinants of Hydroxycinnamic Acid Metabolism in Heterofermentative Lactobacilli. PMID:31862715
NCBI's Conserved Domain Database and Tools for Protein Domain Analysis. PMID:31851420
Whole genome sequencing and novel candidate genes for CAKUT and altered nephrogenesis in the HSRA rat. PMID:31841396
The human DEPhOsphorylation Database DEPOD: 2019 update. PMID:31836896
New Genus Fibralongavirus in Siphoviridae Phages of Staphylococcus pseudintermedius. PMID:31835553
Organising the cell cycle in the absence of transcriptional control: Dynamic phosphorylation co-ordinates the Trypanosoma brucei cell cycle post-transcriptionally. PMID:31830130
Identification of emerging viral genomes in transcriptomic datasets of alfalfa (Medicago sativa L.). PMID:31818304
Metabolic and Genomic Traits of Phytobeneficial Phenazine-Producing Pseudomonas spp. Are Linked to Rhizosphere Colonization in Arabidopsis thaliana and Solanum tuberosum. PMID:31811040
Type II-Metacaspases are involved in cell stress but not in cell death in the unicellular green alga Dunaliella tertiolecta. PMID:31799323
A Conserved Regulatory Circuit Controls Large Adhesins in Vibrio cholerae. PMID:31796544
Molecular replacement using structure predictions from databases. PMID:31793899
Loss of Oxidation Resistance 1, OXR1, Is Associated with an Autosomal-Recessive Neurological Disease with Cerebellar Atrophy and Lysosomal Dysfunction. PMID:31785787
Identification and Characterization of Aspergillus nidulans Mutants Impaired in Asexual Development under Phosphate Stress. PMID:31779253
CDD/SPARCLE: the conserved domain database in 2020. PMID:31777944
Transcriptional characterization and response to defense elicitors of mevalonate pathway genes in cotton (Gossypium arboreum L.). PMID:31768304
The fenestrae-associated protein Plvap regulates the rate of blood-borne protein passage into the hypophysis. PMID:31740533
Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation. PMID:31733063
Comprehensive Analysis of the Chitinase Gene Family in Cucumber (Cucumis sativus L.): From Gene Identification and Evolution to Expression in Response to Fusarium oxysporum. PMID:31731414
Cell-Wall Hydrolases as Antimicrobials against Staphylococcus Species: Focus on Sle1. PMID:31726796
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences. PMID:31701143
Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598. PMID:31697692
Computational and cellular studies reveal structural destabilization and degradation of MLH1 variants in Lynch syndrome. PMID:31697235
MGnify: the microbiome analysis resource in 2020. PMID:31696235
Viromics Reveal a Number of Novel RNA Viruses in Swedish Mosquitoes. PMID:31694175
MitoRibo-Tag Mice Provide a Tool for In Vivo Studies of Mitoribosome Composition. PMID:31693908
PDBe: improved findability of macromolecular structure data in the PDB. PMID:31691821
Subcellular Targeting of the Euplotes raikovi Kinase Er-MAPK1, as Revealed by Expression in Different Cell Systems. PMID:31681773
Comparative Genomic and Transcriptomic Analysis Suggests the Evolutionary Dynamic of GH3 Genes in Gramineae Crops. PMID:31681387
TDR Targets 6: driving drug discovery for human pathogens through intensive chemogenomic data integration. PMID:31680154
The subcellular localization of bHLH transcription factor TCF4 is mediated by multiple nuclear localization and nuclear export signals. PMID:31666615
ChlamDB: a comparative genomics database of the phylum Chlamydiae and other members of the Planctomycetes-Verrucomicrobiae-Chlamydiae superphylum. PMID:31665454
MaGenDB: a functional genomics hub for Malvaceae plants. PMID:31665439
Crystal structure of the catalytic unit of GH 87-type α-1,3-glucanase Agl-KA from Bacillus circulans. PMID:31653959
Exploring the Phytochemical Landscape of the Early-Diverging Flowering Plant Amborella trichopoda Baill. PMID:31652707
Spider Venom: Components, Modes of Action, and Novel Strategies in Transcriptomic and Proteomic Analyses. PMID:31652611
Molecular characterization and In Vitro synthesis of infectious RNA of a Turnip vein-clearing virus isolated from Alliaria petiolata in Hungary. PMID:31648277
Bovine Genome Database: new annotation tools for a new reference genome. PMID:31647100
Draft genome sequences of two oriental melons, Cucumis melo L. var. makuwa. PMID:31641135
POLR3A-related spastic ataxia: new mutations and a look into the phenotype. PMID:31637490
A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock. PMID:31636702
Disease related single point mutations alter the global dynamics of a tetratricopeptide (TPR) α-solenoid domain. PMID:31628985
Determination of Ligand Profiles for Pseudomonas aeruginosa Solute Binding Proteins. PMID:31627455
Whole Genome Sequencing of Familial Non-Medullary Thyroid Cancer Identifies Germline Alterations in MAPK/ERK and PI3K/AKT Signaling Pathways. PMID:31614935
TetR-family transcription factors in Gram-negative bacteria: conservation, variation and implications for efflux-mediated antimicrobial resistance. PMID:31606035
PDBe-KB: a community-driven resource for structural and functional annotations. PMID:31584092
The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomics. PMID:31579570
Draft genome sequence of Solanum aethiopicum provides insights into disease resistance, drought tolerance, and the evolution of the genome. PMID:31574156
The cbb 3-type cytochrome oxidase assembly factor CcoG is a widely distributed cupric reductase. PMID:31570589
Hexa-Longin domain scaffolds for inter-Rab signalling. PMID:31562761
Characterization of Vibrio cholerae's Extracellular Nuclease Xds. PMID:31551990
A scale-free analysis of the HIV-1 genome demonstrates multiple conserved regions of structural and functional importance. PMID:31545786
Prospecting for microbial α-N-acetylgalactosaminidases yields a new class of GH31 O-glycanase. PMID:31530641
Identification and Molecular Characterization of Superoxide Dismutases Isolated From A Scuticociliate Parasite: Physiological Role in Oxidative Stress. PMID:31527617
Using MARRVEL v1.2 for Bioinformatics Analysis of Human Genes and Variant Pathogenicity. PMID:31524990
HH-suite3 for fast remote homology detection and deep protein annotation. PMID:31521110
Structural Insights into the Regulation Mechanism of Small GTPases by GEFs. PMID:31514408
A protein architecture guided screen for modification dependent restriction endonucleases. PMID:31504772
Interspecies comparison of sea star adhesive proteins. PMID:31495313
Genome Sequence of Metarhizium rileyi, a Microbial Control Agent for Lepidoptera. PMID:31488537
Hemimetabolous insects elucidate the origin of sexual development via alternative splicing. PMID:31478483
Combinatorial Avidity Selection of Mosaic Landscape Phages Targeted at Breast Cancer Cells-An Alternative Mechanism of Directed Molecular Evolution. PMID:31454976
A high-quality genome assembly for the endangered golden snub-nosed monkey (Rhinopithecus roxellana). PMID:31437279
The draft genome sequence of the spider Dysdera silvatica (Araneae, Dysderidae): A valuable resource for functional and evolutionary genomic studies in chelicerates. PMID:31430368
Comparative Genomic Analysis of Three Salmonid Species Identifies Functional Candidate Genes Involved in Resistance to the Intracellular Bacterium Piscirickettsia salmonis. PMID:31428125
Resources to Discover and Use Short Linear Motifs in Viral Proteins. PMID:31427097
Identity and functions of inorganic and inositol polyphosphates in plants. PMID:31423587
Phellem Cell-Wall Components Are Discriminants of Cork Quality in Quercus suber. PMID:31417580
The expanding spectrum of neurological disorders of phosphoinositide metabolism. PMID:31413155
The ABCD database: a repository for chemically defined antibodies. PMID:31410491
Transcriptomic Analysis of Marine Gastropod Hemifusus tuba Provides Novel Insights into Conotoxin Genes. PMID:31405144
Comparative Genomics of Marine Sponge-Derived Streptomyces spp. Isolates SM17 and SM18 With Their Closest Terrestrial Relatives Provides Novel Insights Into Environmental Niche Adaptations and Secondary Metabolite Biosynthesis Potential. PMID:31404169
Omics Driven Understanding of the Intestines of Parasitic Nematodes. PMID:31402928
Cassava AGPase genes and their encoded proteins are different from those of other plants. PMID:31399791
Spatially conserved motifs in complement control protein domains determine functionality in regulators of complement activation-family proteins. PMID:31396570
The revised complete mitogenome sequence of the tree frog Polypedatesmegacephalus (Anura, Rhacophoridae) by next-generation sequencing and phylogenetic analysis. PMID:31396450
Proteome-wide subtractive approach to prioritize a hypothetical protein of XDR-Mycobacterium tuberculosis as potential drug target. PMID:31388979
An RNAi Screen for Genes Required for Growth of Drosophila Wing Tissue. PMID:31387856
Identification of a noncanonical RNA binding domain in the U2 snRNP protein SF3A1. PMID:31383795
Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. PMID:31358948
Discovery of Two New Sorbicillinoids by Overexpression of the Global Regulator LaeA in a Marine-Derived Fungus Penicillium dipodomyis YJ-11. PMID:31357680
Quantitative Proteomic Analyses of a Pathogenic Strain and Its Highly Passaged Attenuated Strain of Mycoplasma hyopneumoniae. PMID:31355261
FunFam protein families improve residue level molecular function prediction. PMID:31319797
Environmental conditions shape the nature of a minimal bacterial genome. PMID:31308405
Royal jelly-derived proteins enhance proliferation and migration of human epidermal keratinocytes in an in vitro scratch wound model. PMID:31299973
A critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation. PMID:31273374
Characterization of intellectual disability and autism comorbidity through gene panel sequencing. PMID:31209962
Crystal Structure of the YcjX Stress Protein Reveals a Ras-Like GTP-Binding Protein. PMID:31202886
Correlation between Disease Severity and the Intestinal Microbiome in Mycobacterium tuberculosis-Infected Rhesus Macaques. PMID:31164469
Map and model-moving from observation to prediction in toxicogenomics. PMID:31140561
Evolutionary Analyses Reveal Diverged Patterns of SQUAMOSA Promoter Binding Protein-Like (SPL) Gene Family in Oryza Genus. PMID:31139200
Comprehensive Genomic Survey, Characterization and Expression Analysis of the HECT Gene Family in Brassica rapa L. and Brassica oleracea L. PMID:31137879
Whole Genome Sequencing and Comparative Genomic Analysis Reveal Allelic Variations Unique to a Purple Colored Rice Landrace (Oryza sativa ssp. indica cv. Purpleputtu). PMID:31134103
NetGO: improving large-scale protein function prediction with massive network information. PMID:31106361
Targeting protein methylation: from chemical tools to precision medicines. PMID:31104094
Co-cultivation of the anaerobic fungus Anaeromyces robustus with Methanobacterium bryantii enhances transcription of carbohydrate active enzymes. PMID:31089985
Rhodanese-Like Domain Protein UbaC and Its Role in Ubiquitin-Like Protein Modification and Sulfur Mobilization in Archaea. PMID:31085691
INGA 2.0: improving protein function prediction for the dark proteome. PMID:31073595
Identification of a role for an E6-like 1 gene in early pollen-stigma interactions in Arabidopsis thaliana. PMID:31069543
modEnrichr: a suite of gene set enrichment analysis tools for model organisms. PMID:31069376
Developmental regulators FlbE/D orchestrate the polarity site-to-nucleus dynamics of the fungal bZIP transcription factor FlbB. PMID:31065746
Computational Characterization of the mtORF of Pocilloporid Corals: Insights into Protein Structure and Function in Stylophora Lineages from Contrasting Environments. PMID:31035578
A highly expressed intestinal cysteine protease of Ancylostoma ceylanicum protects vaccinated hamsters from hookworm infection. PMID:31009474
Rapid identification of novel protein families using similarity searches. PMID:30984369
The EMBL-EBI search and sequence analysis tools APIs in 2019. PMID:30976793
Two forms of phosphomannomutase in gammaproteobacteria: The overlooked membrane-bound form of AlgC is required for twitching motility of Lysobacter enzymogenes. PMID:30938049
Cell Wall Hydrolases in Bacteria: Insight on the Diversity of Cell Wall Amidases, Glycosidases and Peptidases Toward Peptidoglycan. PMID:30873139
Mutational load in carotid body tumor. PMID:30871634
The Draft Genome of an Octocoral, Dendronephthya gigantea. PMID:30825304
Genome-Wide Characterization and Identification of Trihelix Transcription Factor and Expression Profiling in Response to Abiotic Stresses in Rice (Oryza sativa L.). PMID:30634597
The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection. PMID:30626175
The European Bioinformatics Institute in 2018: tools, infrastructure and training. PMID:30445657 -
InterPro, progress and status in 2005
PubMed citations: 237.
237 articles citing: InterPro, progress and status in 2005
Design principles of gene evolution for niche adaptation through changes in protein-protein interaction networks. PMID:32973219
A PAS-Containing Histidine Kinase is Required for Conidiation, Appressorium Formation, and Disease Development in the Rice Blast Fungus, Magnaporthe oryzae. PMID:32010469
Genome-Wide Identification, Expression Profile of the TIFY Gene Family in Brassica oleracea var. capitata, and Their Divergent Response to Various Pathogen Infections and Phytohormone Treatments. PMID:31991606
De novo genome assembly and comparative annotation reveals metabolic versatility in cellulolytic bacteria from cropland and forest soils. PMID:31378834
Characterization of a Protein Phosphatase Type-1 and a Kinase Anchoring Protein in Plasmodium falciparum. PMID:30429842
Distinct roles of the YPEL gene family in development and pathogenicity in the ascomycete fungus Magnaporthe oryzae. PMID:30262874
Antivirals for allosteric inhibition of Zika virus using a homology model and experimentally determined structure of envelope protein. PMID:28754167
An Approach for Zika Virus Inhibition Using Homology Structure of the Envelope Protein. PMID:27683255
Evidence of recent interspecies horizontal gene transfer regarding nucleopolyhedrovirus infection of Spodoptera frugiperda. PMID:26607569
Virus proteins similar to human proteins as possible disturbance on human pathways. PMID:26396652
An orthology-based analysis of pathogenic protozoa impacting global health: an improved comparative genomics approach with prokaryotes and model eukaryote orthologs. PMID:24960463
Species-specific expansion and molecular evolution of the 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGR) gene family in plants. PMID:24722776
A Novel Type III Endosome Transmembrane Protein, TEMP. PMID:24710541
Mouse model phenotypes provide information about human drug targets. PMID:24158600
The genus Pseudovibrio contains metabolically versatile bacteria adapted for symbiosis. PMID:23601235
Catalog of Erycina pusilla miRNA and categorization of reproductive phase-related miRNAs and their target gene families. PMID:23575662
Computational model for pathway reconstruction to unravel the evolutionary significance of melanin synthesis. PMID:23390353
Gene sets for utilization of primary and secondary nutrition supplies in the distal gut of endangered Iberian lynx. PMID:23251564
Expression of a finger millet transcription factor, EcNAC1, in tobacco confers abiotic stress-tolerance. PMID:22808152
Genome-wide analysis of the MYB transcription factor superfamily in soybean. PMID:22776508
Novel domain combinations in proteins encoded by chimeric transcripts. PMID:22689780
"Guilt by association" is the exception rather than the rule in gene networks. PMID:22479173
A Resource of Quantitative Functional Annotation for Homo sapiens Genes. PMID:22384401
Structure- and sequence-based function prediction for non-homologous proteins. PMID:22270458
Generation and Analysis of Large-Scale Data-Driven Mycobacterium tuberculosis Functional Networks for Drug Target Identification. PMID:22190924
Time-resolved transcriptomics and bioinformatic analyses reveal intrinsic stress responses during batch culture of Bacillus subtilis. PMID:22087258
Genomic basis of endosymbiont-conferred protection against an insect parasitoid. PMID:21948522
Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales. PMID:21829548
Exploring metabolic pathway reconstruction and genome-wide expression profiling in Lactobacillus reuteri to define functional probiotic features. PMID:21559529
Alternatively Spliced Genes as Biomarkers for Schizophrenia, Bipolar Disorder and Psychosis: A Blood-Based Spliceome-Profiling Exploratory Study. PMID:21532980
Scoring protein relationships in functional interaction networks predicted from sequence data. PMID:21526183
The draft genome of the parasitic nematode Trichinella spiralis. PMID:21336279
Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida. PMID:21170345
Genome-wide computational function prediction of Arabidopsis proteins by integration of multiple data sources. PMID:21098674
Inference of surface membrane factors of HIV-1 infection through functional interaction networks. PMID:20967291
Automatic, context-specific generation of Gene Ontology slims. PMID:20929524
In silico identification of carboxylate clamp type tetratricopeptide repeat proteins in Arabidopsis and rice as putative co-chaperones of Hsp90/Hsp70. PMID:20856808
Detecting novel genes with sparse arrays. PMID:20691772
Real-time ligand binding pocket database search using local surface descriptors. PMID:20455259
Mining Cytochrome b561 proteins from plant genomes. PMID:20223741
Bayesian Markov Random Field analysis for protein function prediction based on network data. PMID:20195360
Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity. PMID:20158875
Predicting Type 1 Diabetes Candidate Genes using Human Protein-Protein Interaction Networks. PMID:20148193
The comprehensive microbial resource. PMID:19892825
The integrated microbial genomes system: an expanding comparative analysis resource. PMID:19864254
Cloning and molecular characterization of a novel rolling-circle replicating plasmid, pK1S-1, from Bacillus thuringiensis subsp. kurstaki K1. PMID:19763421
Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network. PMID:19728866
The functional domain grouping of microtubule associated proteins. PMID:19704789
Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii. PMID:19578403
Mining the Arabidopsis and rice genomes for cyclophilin protein families. PMID:19525202
An integrative genomics approach identifies Hypoxia Inducible Factor-1 (HIF-1)-target genes that form the core response to hypoxia. PMID:19491311
A novel pathogenicity gene is required in the rice blast fungus to suppress the basal defenses of the host. PMID:19390617
Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes in Drosophila. PMID:19323841
Molecular determinants archetypical to the phylum Nematoda. PMID:19296854
TFCat: the curated catalog of mouse and human transcription factors. PMID:19284633
Structural genomics reveals EVE as a new ASCH/PUA-related domain. PMID:19191354
Michigan molecular interactions r2: from interacting proteins to pathways. PMID:18978014
PlasmoDB: a functional genomic database for malaria parasites. PMID:18957442
MODOMICS: a database of RNA modification pathways. 2008 update. PMID:18854352
Just how versatile are domains? PMID:18854028
The genome of the simian and human malaria parasite Plasmodium knowlesi. PMID:18843368
Mutations in CHD7, encoding a chromatin-remodeling protein, cause idiopathic hypogonadotropic hypogonadism and Kallmann syndrome. PMID:18834967
RiceGeneThresher: a web-based application for mining genes underlying QTL in rice genome. PMID:18820292
Development and use of genetic system to identify genes required for efficient low-temperature growth of Psychrobacter arcticus 273-4. PMID:18818866
Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice. PMID:18813954
NetGrep: fast network schema searches in interactomes. PMID:18801179
Access to immunology through the Gene Ontology. PMID:18798919
Fungal cytochrome P450 database. PMID:18755027
Impacts of protein-protein interaction domains on organism and network complexity. PMID:18687879
Intestinal transcriptomes of nematodes: comparison of the parasites Ascaris suum and Haemonchus contortus with the free-living Caenorhabditis elegans. PMID:18682827
Meta-basic estimates the size of druggable human genome. PMID:18663489
Challenges and solutions in proteomics. PMID:18645629
An en masse phenotype and function prediction system for Mus musculus. PMID:18613952
Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function. PMID:18613951
Predicting gene function in a hierarchical context with an ensemble of classifiers. PMID:18613947
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. PMID:18613946
Sequence similarity network reveals common ancestry of multidomain proteins. PMID:18475320
Phylogenomics of plant genomes: a methodology for genome-wide searches for orthologs in plants. PMID:18426584
Complete genome sequence of the soil actinomycete Kocuria rhizophila. PMID:18408034
Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. PMID:18407065
JCoast - a biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes. PMID:18380896
Systematic characterization of the murine mitochondrial proteome using functionally validated cardiac mitochondria. PMID:18348319
Defining functional distances over gene ontology. PMID:18221506
Genes and (common) pathways underlying drug addiction. PMID:18179280
The Arabidopsis MUM2 gene encodes a beta-galactosidase required for the production of seed coat mucilage with correct hydration properties. PMID:18165329
Evaluating deterministic motif significance measures in protein databases. PMID:18157916
Structure of [NiFe] hydrogenase maturation protein HypE from Escherichia coli and its interaction with HypF. PMID:18065529
A primer on python for life science researchers. PMID:18052533
Assessing and combining reliability of protein interaction sources. PMID:17990508
GreenPhylDB: a database for plant comparative genomics. PMID:17986457
Gene Ontology annotations at SGD: new data sources and annotation methods. PMID:17982175
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. PMID:17980028
CFGP: a web-based, comparative fungal genomics platform. PMID:17947331
Characterization of protein hubs by inferring interacting motifs from protein interactions. PMID:17941705
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. PMID:17933782
Structural and transcriptional analyses of a purine nucleotide-binding protein from Pyrococcus furiosus: a component of a novel, membrane-bound multiprotein complex unique to this hyperthermophilic archaeon. PMID:17932790
AutoPSI: a database for automatic structural classification of protein sequences and structures. PMID:17932066
SmedGD: the Schmidtea mediterranea genome database. PMID:17881371
Comparison of protein coding gene contents of the fungal phyla Pezizomycotina and Saccharomycotina. PMID:17868481
Automatic generation of 3D motifs for classification of protein binding sites. PMID:17760982
Characterising alternate splicing and tissue specific expression in the chicken from ESTs. PMID:17675868
Identification of sensory and signal-transducing domains in two-component signaling systems. PMID:17628134
Probabilistic prediction and ranking of human protein-protein interactions. PMID:17615067
FlyMine: an integrated database for Drosophila and Anopheles genomics. PMID:17615057
A topological algorithm for identification of structural domains of proteins. PMID:17608939
WebMOTIFS: automated discovery, filtering and scoring of DNA sequence motifs using multiple programs and Bayesian approaches. PMID:17584794
Evolution of symbiotic bacteria in the distal human intestine. PMID:17579514
Genomic and microarray analysis of aromatics degradation in Geobacter metallireducens and comparison to a Geobacter isolate from a contaminated field site. PMID:17578578
The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. PMID:17570147
A domain-based approach to predict protein-protein interactions. PMID:17567909
Differentiation-dependent expression of Adhfe1 in adipogenesis. PMID:17559793
A new advance in alternative splicing databases: from catalogue to detailed analysis of regulation of expression and function of human alternative splicing variants. PMID:17547750
MyHits: improvements to an interactive resource for analyzing protein sequences. PMID:17545200
Molecular concepts analysis links tumors, pathways, mechanisms, and drugs. PMID:17534450
ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequences. PMID:17526512
Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome. PMID:17511520
Identification of a single HNH active site in type IIS restriction endonuclease Eco31I. PMID:17499273
Patterns of selection and tissue-specific expression among maize domestication and crop improvement loci. PMID:17496114
DBAli tools: mining the protein structure space. PMID:17478513
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. PMID:17478504
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. PMID:17460045
Homology modeling of major intrinsic proteins in rice, maize and Arabidopsis: comparative analysis of transmembrane helix association and aromatic/arginine selectivity filters. PMID:17445256
Statistical analysis of genomic protein family and domain controlled annotations for functional investigation of classified gene lists. PMID:17430558
A kingdom-specific protein domain HMM library for improved annotation of fungal genomes. PMID:17425790
From genes to functional classes in the study of biological systems. PMID:17407596
Gene function in early mouse embryonic stem cell differentiation. PMID:17394647
HitKeeper, a generic software package for hit list management. PMID:17391514
Membrane protein prediction methods. PMID:17367718
Linear array of conserved sequence motifs to discriminate protein subfamilies: study on pyridine nucleotide-disulfide reductases. PMID:17367536
Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. PMID:17356713
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PMID:17355171
GOTax: investigating biological processes and biochemical activities along the taxonomic tree. PMID:17346342
A phylogenomic analysis of the Actinomycetales mce operons. PMID:17324287
Specificity and evolvability in eukaryotic protein interaction networks. PMID:17305419
Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans. PMID:17274809
Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins. PMID:17263873
Motif kernel generated by genetic programming improves remote homology and fold detection. PMID:17254344
Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology. PMID:17254302
Genomic functional investigation through statistical analysis of protein families and domains. PMID:17238639
Plant Gene and Alternatively Spliced Variant Annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species expressed sequence tag conservation from seven plant species. PMID:17220363
DiscoverySpace: an interactive data analysis application. PMID:17210078
SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions. PMID:17202171
New developments in the InterPro database. PMID:17202162
Analysis and prediction of functionally important sites in proteins. PMID:17192586
Evolutionary conservation of domain-domain interactions. PMID:17184549
EMBL Nucleotide Sequence Database in 2006. PMID:17148479
IntAct--open source resource for molecular interaction data. PMID:17145710
Expanded protein information at SGD: new pages and proteome browser. PMID:17142221
MiST: a microbial signal transduction database. PMID:17135192
GeneSpeed: protein domain organization of the transcriptome. PMID:17132830
The mouse Gene Expression Database (GXD): 2007 update. PMID:17130151
Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. PMID:17130145
PANTHER version 6: protein sequence and function evolution data with expanded representation of biological pathways. PMID:17130144
EVEREST: a collection of evolutionary conserved protein domains. PMID:17099230
SynDB: a Synapse protein DataBase based on synapse ontology. PMID:17098931
The SUPERFAMILY database in 2007: families and functions. PMID:17098927
Human-specific insertions and deletions inferred from mammalian genome sequences. PMID:17095709
CancerGenes: a gene selection resource for cancer genome projects. PMID:17088289
Proteolytic adaptor for transfer-messenger RNA-tagged proteins from alpha-proteobacteria. PMID:17085560
ProtoBee: hierarchical classification and annotation of the honey bee proteome. PMID:17065614
'Genome design' model and multicellular complexity: golden middle. PMID:17062620
Java GUI for InterProScan (JIPS): a tool to help process multiple InterProScans and perform ortholog analysis. PMID:17054794
Maintenance DNA methyltransferase (Met1) and silencing of CpG-methylated foreign DNA in Volvox carteri. PMID:17033890
Comparative proteomic analysis of high cell density cultivations with two recombinant Bacillus megaterium strains for the production of a heterologous dextransucrase. PMID:17022804
Analysis of protein sequence and interaction data for candidate disease gene prediction. PMID:17020920
The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes. PMID:16980466
Cataloging the relationships between proteins: a review of interaction databases. PMID:16943573
A RecA-mediated exon profiling method. PMID:16896013
Genomic organization, differential expression, and interaction of SQUAMOSA promoter-binding-like transcription factors and microRNA156 in rice. PMID:16861571
Crystal structure of TDP-fucosamine acetyltransferase (WecD) from Escherichia coli, an enzyme required for enterobacterial common antigen synthesis. PMID:16855251
ProKware: integrated software for presenting protein structural properties in protein tertiary structures. PMID:16845116
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. PMID:16845052
ScanProsite: detection of PROSITE signature matches and ProRule-associated functional and structural residues in proteins. PMID:16845026
TACT: Transcriptome Auto-annotation Conducting Tool of H-InvDB. PMID:16845023
MACSIMS: multiple alignment of complete sequences information management system. PMID:16792820
Prioritizing genomic drug targets in pathogens: application to Mycobacterium tuberculosis. PMID:16789813
A new measure for functional similarity of gene products based on Gene Ontology. PMID:16776819
The Escherichia coli proteome: past, present, and future prospects. PMID:16760308
Energetic consequences of nitrite stress in Desulfovibrio vulgaris Hildenborough, inferred from global transcriptional analysis. PMID:16751553
A wing expressed sequence tag resource for Bicyclus anynana butterflies, an evo-devo model. PMID:16737530
Protein family expansions and biological complexity. PMID:16733546
The gain and loss of genes during 600 million years of vertebrate evolution. PMID:16723033
The effects of multiple features of alternatively spliced exons on the K(A)/K(S) ratio test. PMID:16709259
Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. PMID:16685651
Functional annotation prediction: all for one and one for all. PMID:16672244
Conversion of MapMan to allow the analysis of transcript data from Solanaceous species: effects of genetic and environmental alterations in energy metabolism in the leaf. PMID:16649112
Phylogenomic analysis of the GIY-YIG nuclease superfamily. PMID:16646971
Phylogenomic analysis of vertebrate thrombospondins reveals fish-specific paralogues, ancestral gene relationships and a tetrapod innovation. PMID:16620379
The dictyostelium kinome--analysis of the protein kinases from a simple model organism. PMID:16596165
Update of the NAD(P)H:quinone oxidoreductase (NQO) gene family. PMID:16595077
L-tartaric acid synthesis from vitamin C in higher plants. PMID:16567629
Amplification of the Gene Ontology annotation of Affymetrix probe sets. PMID:16549014
Exploring dynamics of protein structure determination and homology-based prediction to estimate the number of superfamilies and folds. PMID:16549009
Domain-based small molecule binding site annotation. PMID:16545112
ExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organisms. PMID:16539733
Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat. PMID:16536879
Towards genome-scale structure prediction for transmembrane proteins. PMID:16524835
The proteome: structure, function and evolution. PMID:16524832
Structure of the conserved hypothetical protein MAL13P1.257 from Plasmodium falciparum. PMID:16511296
A comprehensive software suite for the analysis of cDNAs. PMID:16487083
Transcriptional activators in yeast. PMID:16464826
A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks. PMID:16420670
MaGe: a microbial genome annotation system supported by synteny results. PMID:16407324
A systematic approach to infer biological relevance and biases of gene network structures. PMID:16407322
Panzea: a database and resource for molecular and functional diversity in the maize genome. PMID:16381974
Phytome: a platform for plant comparative genomics. PMID:16381967
Gramene: a bird's eye view of cereal genomes. PMID:16381966
The UCSC Genome Browser Database: update 2006. PMID:16381938
The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. PMID:16381934
TRANSPATH: an information resource for storing and visualizing signaling pathways and their pathological aberrations. PMID:16381929
pSTIING: a 'systems' approach towards integrating signalling pathways, interaction and transcriptional regulatory networks in inflammation and cancer. PMID:16381926
FLIGHT: database and tools for the integration and cross-correlation of large-scale RNAi phenotypic datasets. PMID:16381916
The UCSC Archaeal Genome Browser. PMID:16381898
VMD: a community annotation database for oomycetes and microbial genomes. PMID:16381891
INVHOGEN: a database of homologous invertebrate genes. PMID:16381884
The integrated microbial genomes (IMG) system. PMID:16381883
The SWISS-MODEL Repository: new features and functionalities. PMID:16381875
SCOPPI: a structural classification of protein-protein interfaces. PMID:16381874
SIMAP: the similarity matrix of proteins. PMID:16381858
ChimerDB--a knowledgebase for fusion sequences. PMID:16381848
The Universal Protein Resource (UniProt): an expanding universe of protein information. PMID:16381842
MODOMICS: a database of RNA modification pathways. PMID:16381833
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes. PMID:16381825
EMBL Nucleotide Sequence Database: developments in 2005. PMID:16381823
Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity. PMID:16351747
The EH1 motif in metazoan transcription factors. PMID:16309560
Discover protein sequence signatures from protein-protein interaction data. PMID:16305745
Channel formation by CarO, the carbapenem resistance-associated outer membrane protein of Acinetobacter baumannii. PMID:16304148
Sequence and structural analysis of BTB domain proteins. PMID:16207353
Recognition of unknown conserved alternatively spliced exons. PMID:16110330
Mating type loci of Sporisorium reilianum: novel pattern with three a and multiple b specificities. PMID:16087737
MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences. PMID:16043635
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function. PMID:16011798
The MicrobesOnline Web site for comparative genomics. PMID:15998914
Proteomic analysis of a eukaryotic cilium. PMID:15998802
Scooby-domain: prediction of globular domains in protein sequence. PMID:15980446
InterProScan: protein domains identifier. PMID:15980438 - http://dx.doi.org/10.1093/nar/gkaa977
- http://dx.doi.org/10.1093/nar/gkw1107
Tags:
Tags
More detailed information about this field from each metasource.
binding motif
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
computational predictions
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
conserved region
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
function analysis
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
functional domain
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
genome
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
molecular function
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
protein domain
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
sequencing
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
polypeptide_region
metasource: Fairsharing.org
version: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2021-04-07T11:50:35.288810
protein sequence motifs and active sites
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2021-04-07T11:50:35.288810
amino acid sequence
metasource: re3data.org
version: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
amino acids
metasource: re3data.org
version: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
genomes
metasource: re3data.org
version: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
nucleic acids
metasource: re3data.org
version: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
proteins
metasource: re3data.org
version: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
metasource: bio.tools
version: extracted_at: 2021-04-07T11:58:53.038455
gene and protein families
metasource: bio.tools
version: extracted_at: 2021-04-07T11:58:53.038455
sequence composition, complexity and repeats
metasource: bio.tools
version: extracted_at: 2021-04-07T11:58:53.038455
Tags
More detailed information about this field from each metasource.
binding motif
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
computational predictions
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
conserved region
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
function analysis
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
functional domain
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
genome
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
molecular function
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
protein domain
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
sequencing
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
polypeptide_region
metasource: Fairsharing.orgversion: FAIRsharing.org: InterPro; Integrated resource of protein families, domains and functional sites; DOI: https://doi.org/10.25504/FAIRsharing.pda11d; Last edited: Feb. 11, 2020, 8:37 p.m.; Last accessed: Apr 07 2021 11:38 a.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
protein sequence motifs and active sites
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
amino acid sequence
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
amino acids
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
genomes
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
nucleic acids
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
proteins
metasource: re3data.orgversion: re3data.org: InterPro; editing status 2019-02-12; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FS61 last accessed: 2021-04-07
metasource: bio.tools
version: extracted_at: 2021-04-07T11:58:53.038455
gene and protein families
metasource: bio.toolsversion: extracted_at: 2021-04-07T11:58:53.038455
sequence composition, complexity and repeats
metasource: bio.toolsversion: extracted_at: 2021-04-07T11:58:53.038455
binding motif computational predictions conserved region function analysis functional domain genome molecular function protein protein domain sequencing polypeptide region protein sequence protein sequence motifs and active sites amino acid sequence amino acids genomes nucleic acids proteins gene and protein families sequence composition, complexity and repeats