Porphyromonas gingivalis fimbrial protein Mfa5 contains a von Willebrand factor domain and an intramolecular isopeptide.
PMID:33495563
Identification and Downstream Analyses of Domains Amplified in Plant Genomes: The Case of StAR-Related Lipid Transfer (START) Domains in Rice.
PMID:33471342
Evolution of A bHLH Interaction Motif.
PMID:33466276
Genomic signatures of the evolution of defence against its natural enemies in the poisonous and medicinal plant Datura stramonium (Solanaceae).
PMID:33441607
Cold-Shock Domains-Abundance, Structure, Properties, and Nucleic-Acid Binding.
PMID:33430354
Alternative Splicing Increases Sirtuin Gene Family Diversity and Modulates Their Subcellular Localization and Function.
PMID:33418837
Phage infection and sub-lethal antibiotic exposure mediate Enterococcus faecalis type VII secretion system dependent inhibition of bystander bacteria.
PMID:33411815
Limited Proteolysis-Coupled Mass Spectrometry Identifies Phosphatidylinositol 4,5-Bisphosphate Effectors in Human Nuclear Proteome.
PMID:33406800
Bioinformatics: new tools and applications in life science and personalized medicine.
PMID:33404829
Insight into the bZIP Gene Family in Solanum tuberosum: Genome and Transcriptome Analysis to Understand the Roles of Gene Diversification in Spatiotemporal Gene Expression and Function.
PMID:33383823
Classification and phylogeny for the annotation of novel eukaryotic GNAT acetyltransferases.
PMID:33362253
Genome-wide identification and evolution of HECT genes in wheat.
PMID:33344088
The Central Region of Testican-2 Forms a Compact Core and Promotes Cell Migration.
PMID:33321927
Genomic Analysis of Natural Rough Brucella melitensis Rev.1 Vaccine Strains: Identification and Characterization of Mutations in Key Genes Associated with Bacterial LPS Biosynthesis and Virulence.
PMID:33302421
Real-time structural motif searching in proteins using an inverted index strategy.
PMID:33284792
Application of Next Generation Sequencing (NGS) in Phage Displayed Peptide Selection to Support the Identification of Arsenic-Binding Motifs.
PMID:33261041
Characterization of MSlys, the endolysin of Streptococcus pneumoniae phage MS1.
PMID:33204659
Inhibition of DNA Methylation in Picochlorum soloecismus Alters Algae Productivity.
PMID:33193644
Comparative Genomics Platform and Phylogenetic Analysis of Fungal Laccases and Multi-Copper Oxidases.
PMID:33177916
The InterPro protein families and domains database: 20 years on.
PMID:33156333
Genomic and phylogenetic characterization of ChPV2, a novel goat PV closely related to the Xi-PV1 species infecting bovines.
PMID:33126890
Zinc and Copper Ions Differentially Regulate Prion-Like Phase Separation Dynamics of Pan-Virus Nucleocapsid Biomolecular Condensates.
PMID:33081049
A high-quality chromosome-level genome assembly reveals genetics for important traits in eggplant.
PMID:33024567
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing.
PMID:32962098
Structural Insights into the Binding Modes of Viral RNA-Dependent RNA Polymerases Using a Function-Site Interaction Fingerprint Method for RNA Virus Drug Discovery.
PMID:32946692
Isolation and characterisation of Leishmania donovani protein antigens from urine of visceral leishmaniasis patients.
PMID:32925980
Draft Genome Assembly of the Freshwater Apex Predator Wels Catfish (Silurus glanis) Using Linked-Read Sequencing.
PMID:32917720
Hydrogenases and the Role of Molecular Hydrogen in Plants.
PMID:32887396
Phylogenetic Analyses of Glycosyl Hydrolase Family 6 Genes in Tunicates: Possible Horizontal Transfer.
PMID:32823766
"Mind the Gap": Hi-C Technology Boosts Contiguity of the Globe Artichoke Genome in Low-Recombination Regions.
PMID:32817122
Viral elements and their potential influence on microbial processes along the permanently stratified Cariaco Basin redoxcline.
PMID:32801311
Comparative Genomics Underlines Multiple Roles of Profftella, an Obligate Symbiont of Psyllids: Providing Toxins, Vitamins, and Carotenoids.
PMID:32797185
Transcriptomic profiling of the medicinal plant Clitoria ternatea: identification of potential genes in cyclotide biosynthesis.
PMID:32728092
Identification of Sulfenylated Cysteines in Arabidopsis thaliana Proteins Using a Disulfide-Linked Peptide Reporter.
PMID:32714340
Adaptation of gene loci to heterochromatin in the course of Drosophila evolution is associated with insulator proteins.
PMID:32681087
Structural Studies of Glutamate Dehydrogenase (Isoform 1) From Arabidopsis thaliana, an Important Enzyme at the Branch-Point Between Carbon and Nitrogen Metabolism.
PMID:32655590
A cryptic sequence targets the adhesion complex scaffold ANKS4B to apical microvilli to promote enterocyte brush border assembly.
PMID:32636301
Dual lysine and N-terminal acetyltransferases reveal the complexity underpinning protein acetylation.
PMID:32633465
Genetic factors for short life span associated with evolution of the loss of flight ability.
PMID:32607209
Expression of DOCK9 and DOCK11 Analyzed with Commercial Antibodies: Focus on Regulation of Mutually Exclusive First Exon Isoforms.
PMID:32605015
Bioinformatics analysis and characterization of a secretory cystatin from Thelohanellus kitauei.
PMID:32577834
Putative circumsporozoite protein (CSP) of Plasmodium vivax is considerably distinct from the well-known CSP and plays a role in the protein ubiquitination pathway.
PMID:32550551
Whole genome resequencing of four Italian sweet pepper landraces provides insights on sequence variation in genes of agronomic value.
PMID:32514106
dBMHCC: A comprehensive hepatocellular carcinoma (HCC) biomarker database provides a reliable prediction system for novel HCC phosphorylated biomarkers.
PMID:32497121
piNET: a versatile web platform for downstream analysis and visualization of proteomics data.
PMID:32469073
Molecular Characterization of a Date Palm Vascular Highway 1-Interacting Kinase (PdVIK) Under Abiotic Stresses.
PMID:32438658
In silico Analyses of Core Proteins and Putative Effector and Immunity Proteins for T6SS in Enterohemorrhagic E. coli.
PMID:32432054
An improved high-quality genome assembly and annotation of Tibetan hulless barley.
PMID:32385314
Identification and in silico structural and functional analysis of a trypsin-like protease from shrimp Macrobrachium carcinus.
PMID:32351789
A draft genome assembly of spotted hyena, Crocuta crocuta.
PMID:32345970
Aspartate aminotransferase Rv3722c governs aspartate-dependent nitrogen metabolism in Mycobacterium tuberculosis.
PMID:32327655
RNAseq-Based Prioritization Revealed COL6A5, COL8A1, COL10A1 and MIR146A as Common and Differential Susceptibility Biomarkers for Psoriasis and Psoriatic Arthritis: Confirmation from Genotyping Analysis of 1417 Italian Subjects.
PMID:32326527
The Cell Wall PAC (Proline-Rich, Arabinogalactan Proteins, Conserved Cysteines) Domain-Proteins Are Conserved in the Green Lineage.
PMID:32260156
Cauliflower Mosaic Virus TAV, a Plant Virus Protein That Functions like Ribonuclease H1 and is Cytotoxic to Glioma Cells.
PMID:32258141
Accurate Representation of Protein-Ligand Structural Diversity in the Protein Data Bank (PDB).
PMID:32213914
Dynamics-function relationship in the catalytic domains of N-terminal acetyltransferases.
PMID:32206212
NBCZone: Universal three-dimensional construction of eleven amino acids near the catalytic nucleophile and base in the superfamily of (chymo)trypsin-like serine fold proteases.
PMID:32151723
Comparative genomics analysis of c-di-GMP metabolism and regulation in Microcystis aeruginosa.
PMID:32151246
A highly conserved complete accessory Escherichia coli type III secretion system 2 is widespread in bloodstream isolates of the ST69 lineage.
PMID:32139768
A potential role for integrins in host cell entry by SARS-CoV-2.
PMID:32130973
Expression of DOCK10.1 protein revealed with a specific antiserum: insights into regulation of first exon isoforms of DOCK10.
PMID:32112301
The Evolution History of Fe-S Cluster A-Type Assembly Protein Reveals Multiple Gene Duplication Events and Essential Protein Motifs.
PMID:32108236
Cryo-EM structure of the Shigella type III needle complex.
PMID:32092125
Molecular and functional insights into a novel teleost malectin from big-belly seahorse Hippocampus abdominalis.
PMID:32087279
HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes.
PMID:32034905
Bioinformatics for Renal and Urinary Proteomics: Call for Aggrandization.
PMID:32024005
Eighty-eight variants highlight the role of T cell regulation and airway remodeling in asthma pathogenesis.
PMID:31959851
The Chalcone Isomerase Family in Cotton: Whole-Genome Bioinformatic and Expression Analyses of the Gossypium barbadense L. Response to Fusarium Wilt Infection.
PMID:31817162
Type II-Metacaspases are involved in cell stress but not in cell death in the unicellular green alga Dunaliella tertiolecta.
PMID:31799323
Insights into evolutionary interaction patterns of the 'Phosphorylation Activation Segment' in kinase.
PMID:31787816
Global targeting of functional tyrosines using sulfur-triazole exchange chemistry.
PMID:31768034
Purification and characterization of proteins in multifloral honey from kelulut bee (stingless bee).
PMID:31763485
Overexpression of Saussurea involucrata dehydrin gene SiDHN promotes cold and drought tolerance in transgenic tomato plants.
PMID:31738789
Comprehensive Analysis of the Chitinase Gene Family in Cucumber (Cucumis sativus L.): From Gene Identification and Evolution to Expression in Response to Fusarium oxysporum.
PMID:31731414
NEDD4 family ubiquitin ligases associate with LCMV Z's PPXY domain and are required for virus budding, but not via direct ubiquitination of Z.
PMID:31710650
Enzyme annotation in UniProtKB using Rhea.
PMID:31688925
A specific fungal transcription factor controls effector gene expression and orchestrates the establishment of the necrotrophic pathogen lifestyle on wheat.
PMID:31685928
Identification and evolution of glucosinolate sulfatases in a specialist flea beetle.
PMID:31673017
Condensin II protein dysfunction impacts mitochondrial respiration and mitochondrial oxidative stress responses.
PMID:31653782
ExonSkipDB: functional annotation of exon skipping event in human.
PMID:31642488
Compound Dynamics and Combinatorial Patterns of Amino Acid Repeats Encode a System of Evolutionary and Developmental Markers.
PMID:31589292
The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomics.
PMID:31579570
The CLN3 gene and protein: What we know.
PMID:31568712
Vibrio Proteases for Biomedical Applications: Modulating the Proteolytic Secretome of V. alginolyticus and V. parahaemolyticus for Improved Enzymes Production.
PMID:31554228
Differential effects of membrane sphingomyelin and cholesterol on agonist-induced bitter taste receptor T2R14 signaling.
PMID:31541354
Role of Clathrin Assembly Protein-2 Beta Subunit during White Spot Syndrome Virus Infection in Black Tiger Shrimp Penaeus monodon.
PMID:31530841
Long-chain flavodoxin FldX1 improves Paraburkholderia xenovorans LB400 tolerance to oxidative stress caused by paraquat and H2O2.
PMID:31469877
HERCing: Structural and Functional Relevance of the Large HERC Ubiquitin Ligases.
PMID:31447701
The ABCD database: a repository for chemically defined antibodies.
PMID:31410491
Extreme Diversity of Mycoviruses Present in Isolates of Rhizoctonia solani AG2-2 LP From Zoysia japonica From Brazil.
PMID:31355150
The human 18S rRNA m6A methyltransferase METTL5 is stabilized by TRMT112.
PMID:31328227
FunFam protein families improve residue level molecular function prediction.
PMID:31319797
Combined alignments of sequences and domains characterize unknown proteins with remotely related protein search PSISearch2D.
PMID:31317184
RNA processing errors triggered by cadmium and integrator complex disruption are signals for environmental stress.
PMID:31311534
Environmental conditions shape the nature of a minimal bacterial genome.
PMID:31308405
De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan Province, China.
PMID:31307060
Atopic Eczema: Genetic Analysis of COL6A5, COL8A1, and COL10A1 in Mediterranean Populations.
PMID:31275967
In-silico Prediction of Synergistic Anti-Cancer Drug Combinations Using Multi-omics Data.
PMID:31222109
Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome.
PMID:31199787
Protective Function of Novel Fungal Immunomodulatory Proteins Fip-lti1 and Fip-lti2 from Lentinus tigrinus in Concanavalin A-Induced Liver Oxidative Injury.
PMID:31198490
In silico Prediction and Validations of Domains Involved in Gossypium hirsutum SnRK1 Protein Interaction With Cotton Leaf Curl Multan Betasatellite Encoded βC1.
PMID:31191577
TET2 missense variants in human neoplasia. A proposal of structural and functional classification.
PMID:31187595
New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes.
PMID:31117933
Genome-wide characterization of a SRO gene family involved in response to biotic and abiotic stresses in banana (Musa spp.).
PMID:31113386
An ADAMTS3 missense variant is associated with Norwich Terrier upper airway syndrome.
PMID:31095560
High precision protein functional site detection using 3D convolutional neural networks.
PMID:31051039
Comparative genomics of 10 new Caenorhabditis species.
PMID:31007946
Identification and expression analysis of ERECTA family genes in grape (Vitis vinifera L.).
PMID:31004330
The potato cyst nematode effector RHA1B is a ubiquitin ligase and uses two distinct mechanisms to suppress plant immune signaling.
PMID:30978251
A Multireporter Bacterial 2-Hybrid Assay for the High-Throughput and Dynamic Assay of PDZ Domain-Peptide Interactions.
PMID:30969105
Estimating probabilistic context-free grammars for proteins using contact map constraints.
PMID:30918754
Genome-wide identification and characterization of abiotic-stress responsive SOD (superoxide dismutase) gene family in Brassica juncea and B. rapa.
PMID:30890148
Identification of evolutionarily conserved virulence factor by selective pressure analysis of Streptococcus pneumoniae.
PMID:30886906
Draft genome of the brown alga, Nemacystus decipiens, Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway.
PMID:30872679
Identification of a novel potassium channel (GiK) as a potential drug target in Giardia lamblia: Computational descriptions of binding sites.
PMID:30834181
Anaerobic Degradation of Sulfated Polysaccharides by Two Novel Kiritimatiellales Strains Isolated From Black Sea Sediment.
PMID:30833937
Draft genomic and transcriptome resources for marine chelicerate Tachypleus tridentatus.
PMID:30806641
PIRSitePredict for protein functional site prediction using position-specific rules.
PMID:30805646
Moraxella catarrhalis NucM is an entry nuclease involved in extracellular DNA and RNA degradation, cell competence and biofilm scaffolding.
PMID:30796312
The Molecular Mechanism of Nitrate Chemotaxis via Direct Ligand Binding to the PilJ Domain of McpN.
PMID:30782655
Cdk8 and Ssn801 Regulate Oxidative Stress Resistance and Virulence in Cryptococcus neoformans.
PMID:30755515
Characterization of a phospholipid-regulated β-galactosidase from Akkermansia muciniphila involved in mucin degradation.
PMID:30729732
Protein analysis reveals differential accumulation of late embryogenesis abundant and storage proteins in seeds of wild and cultivated amaranth species.
PMID:30727945
Ulcerative colitis: functional analysis of the in-depth proteome.
PMID:30718987
DeepDrug3D: Classification of ligand-binding pockets in proteins with a convolutional neural network.
PMID:30716081
Chromosome conformation capture resolved near complete genome assembly of broomcorn millet.
PMID:30683940
PK-profiling method for identifying the expression of resistance-associated genes in partially resistant oats to crown rust.
PMID:30594125
Panproteome-wide analysis of antibody responses to whole cell pneumococcal vaccination.
PMID:30592459
Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing.
PMID:30576513
Vertebrate SLRP family evolution and the subfunctionalization of osteoglycin gene duplicates in teleost fish.
PMID:30545285
Exploring Seipin: From Biochemistry to Bioinformatics Predictions.
PMID:30402103
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
PMID:30398656
A de Novo EDA-Variant in a Litter of Shorthaired Standard Dachshunds with X-Linked Hypohidrotic Ectodermal Dysplasia.
PMID:30397018
Defining the human C2H2 zinc finger degrome targeted by thalidomide analogs through CRBN.
PMID:30385546
Motif-Aware PRALINE: Improving the alignment of motif regions.
PMID:30383764
Highly Continuous Genome Assembly of Eurasian Perch (Perca fluviatilis) Using Linked-Read Sequencing.
PMID:30355765
Analysis of impact metrics for the Protein Data Bank.
PMID:30325351
Global pentapeptide statistics are far away from expected distributions.
PMID:30310110
A helical LC3-interacting region mediates the interaction between the retroviral restriction factor Trim5α and mammalian autophagy-related ATG8 proteins.
PMID:30282803
Membrane-Bound Class III Peroxidases: Unexpected Enzymes with Exciting Functions.
PMID:30248965
Global Profiling of Lysine Acetylation in Borrelia burgdorferi B31 Reveals Its Role in Central Metabolism.
PMID:30233522
A comprehensive manually-curated compendium of bovine transcription factors.
PMID:30213987
Systematic Identification and Classification of β-Lactamases Based on Sequence Similarity Criteria: β-Lactamase Annotation.
PMID:30210232
Phylo-PFP: improved automated protein function prediction using phylogenetic distance of distantly related sequences.
PMID:30165572
A multi-source domain annotation pipeline for quantitative metagenomic and metatranscriptomic functional profiling.
PMID:30153857
Genomic analysis of the original Elberg Brucella melitensis Rev.1 vaccine strain reveals insights into virulence attenuation.
PMID:30139304
Tomato MYB49 enhances resistance to Phytophthora infestans and tolerance to water deficit and salt stress.
PMID:30132153
The genome sequence of the soft-rot fungus Penicillium purpurogenum reveals a high gene dosage for lignocellulolytic enzymes.
PMID:30123662
Structural basis of cell wall anchoring by SLH domains in Paenibacillus alvei.
PMID:30087354
Cloning and Functional Characterisation of the Duplicated RDL Subunits from the Pea Aphid, Acyrthosiphon pisum.
PMID:30065178
MouR controls the expression of the Listeria monocytogenes Agr system and mediates virulence.
PMID:30011022
A Pathogen-Responsive Leucine Rich Receptor Like Kinase Contributes to Fusarium Resistance in Cereals.
PMID:29997638
Learning with multiple pairwise kernels for drug bioactivity prediction.
PMID:29949975
DeepFam: deep learning based alignment-free method for protein family modeling and prediction.
PMID:29949966
Molecular characterization of a stress-induced NAC gene, GhSNAC3, from Gossypium hirsutum.
PMID:29932074
In silico and in vitro analysis of boAP3d1 protein interaction with bovine leukaemia virus gp51.
PMID:29928016
Annotation and profiling of barley GLYCOGEN SYNTHASE3/Shaggy-like genes indicated shift in organ-preferential expression.
PMID:29920545
Novel Insights from Comparative In Silico Analysis of Green Microalgal Cellulases.
PMID:29914107
SEVENS: a database for comprehensive GPCR genes obtained from genomes: -Update to 68 eukaryotes.
PMID:29892516
Genomic analysis of bifunctional Class C-Class D β-lactamases in environmental bacteria.
PMID:29846396
Evidence for interaction between Hsp90 and the ER membrane complex.
PMID:29808299
The conserved RNA recognition motif and C3H1 domain of the Not4 ubiquitin ligase regulate in vivo ligase function.
PMID:29802328
Using ZFIN: Data Types, Organization, and Retrieval.
PMID:29761463
Identification and structural characterization of a histidinol phosphate phosphatase from Mycobacterium tuberculosis.
PMID:29752410
Patscanui: an intuitive web interface for searching patterns in DNA and protein data.
PMID:29722870
Comparative systems analysis of the secretome of the opportunistic pathogen Aspergillus fumigatus and other Aspergillus species.
PMID:29700415
Identification of Placental Aspartic Proteinase in the Eurasian Beaver (Castor fiber L.).
PMID:29670018
Duplication and diversification of lectin receptor-like kinases (LecRLK) genes in soybean.
PMID:29651041
HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold.
PMID:29579071
MetaGO: Predicting Gene Ontology of Non-homologous Proteins Through Low-Resolution Protein Structure Prediction and Protein-Protein Network Mapping.
PMID:29534977
Two Phytoplasmas Elicit Different Responses in the Insect Vector Euscelidius variegatus Kirschbaum.
PMID:29531134
Surfaceome and Proteosurfaceome in Parietal Monoderm Bacteria: Focus on Protein Cell-Surface Display.
PMID:29491848
SUMO polymeric chains are involved in nuclear foci formation and chromatin organization in Trypanosoma brucei procyclic forms.
PMID:29474435
Biofilm Formation by the Acidophile Bacterium Acidithiobacillus thiooxidans Involves c-di-GMP Pathway and Pel exopolysaccharide.
PMID:29466318
Peptide Level Turnover Measurements Enable the Study of Proteoform Dynamics.
PMID:29414762
Activation of Aflatoxin Biosynthesis Alleviates Total ROS in Aspergillus parasiticus.
PMID:29382166
Genetic Architecture of Capitate Glandular Trichome Density in Florets of Domesticated Sunflower (Helianthus annuus L.).
PMID:29375602
Identification of the Autochaperone Domain in the Type Va Secretion System (T5aSS): Prevalent Feature of Autotransporters with a β-Helical Passenger.
PMID:29375499
A chelicerate-specific burst of nonclassical Dscam diversity.
PMID:29351731
Specialized attachment structure of the fish pathogenic oomycete Saprolegnia parasitica.
PMID:29342156
DmCatD, a cathepsin D-like peptidase of the hematophagous insect Dipetalogaster maxima (Hemiptera: Reduviidae): Purification, bioinformatic analyses and the significance of its interaction with lipophorin in the internalization by developing oocytes.
PMID:29325877
Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia viridis and Transcriptome Wide Identification of Cnidarian Homologues.
PMID:29324689
Molecular and Biochemical Characterization of Opisthorchis viverrini Calreticulin.
PMID:29320819
Simultaneous Silencing of Xylanase Genes in Botrytis cinerea.
PMID:29312413
Domain retention in transcription factor fusion genes and its biological and clinical implications: a pan-cancer study.
PMID:29299133
Synectin promotes fibrogenesis by regulating PDGFR isoforms through distinct mechanisms.
PMID:29263300
Improving the explainability of Random Forest classifier - user centered approach.
PMID:29218882
Prediction of protein-ligand interactions from paired protein sequence motifs and ligand substructures.
PMID:29218866
Identification and Initial Characterization of the Effectors of an Anther Smut Fungus and Potential Host Target Proteins.
PMID:29165363
Genomic assessment in Lactobacillus plantarum links the butyrogenic pathway with glutamine metabolism.
PMID:29162929
Copy Number Variation and Expression Analysis Reveals a Nonorthologous Pinta Gene Family Member Involved in Butterfly Vision.
PMID:29136137
Identification of a molecular pH sensor in coral.
PMID:29093223
20 years of the SMART protein domain annotation resource.
PMID:29040681
Conotoxins as Tools to Understand the Physiological Function of Voltage-Gated Calcium (CaV) Channels.
PMID:29027927
Heterozygous mutations affecting the protein kinase domain of CDK13 cause a syndromic form of developmental delay and intellectual disability.
PMID:29021403
Dissecting the molecular assembly of the Toxoplasma gondii MyoA motility complex.
PMID:28972141
A Novel Calcium Uptake Transporter of Uncharacterized P-Type ATPase Family Supplies Calcium for Cell Surface Integrity in Mycobacterium smegmatis.
PMID:28951477
Apophysomyces variabilis: draft genome sequence and comparison of predictive virulence determinants with other medically important Mucorales.
PMID:28923009
Evidence-based gene models for structural and functional annotations of the oil palm genome.
PMID:28886750
When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants.
PMID:28882004
Prokaryotic and Highly-Repetitive WD40 Proteins: A Systematic Study.
PMID:28878378
De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read.
PMID:28873963
Myosin repertoire expansion coincides with eukaryotic diversification in the Mesoproterozoic era.
PMID:28870165
Disclosing 3' UTR cis-elements and putative partners involved in gene expression regulation in Leishmania spp.
PMID:28859096
Comparative molecular analyses of select pH- and osmoregulatory genes in three freshwater crayfish Cherax quadricarinatus, C. destructor and C. cainii.
PMID:28852583
Polymorphism and structure of style-specific arabinogalactan proteins as determinants of pollen tube growth in Nicotiana.
PMID:28797243
Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors.
PMID:28787438
PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection.
PMID:28761071
Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species.
PMID:28756777
Anion-selective Formate/nitrite transporters: taxonomic distribution, phylogenetic analysis and subfamily-specific conservation pattern in prokaryotes.
PMID:28738779
Cloning and Characterization of ThSHRs and ThSCR Transcription Factors in Taxodium Hybrid 'Zhongshanshan 406'.
PMID:28726763
Genome reconstruction in Cynara cardunculus taxa gains access to chromosome-scale DNA variation.
PMID:28717205
Structural and functional diversity of EF-hand proteins: Evolutionary perspectives.
PMID:28707401
Analysis of MAP kinase MPK4/MEKK1/MKK genes of Carica papaya L. comparative to other plant homologues.
PMID:28642634
Evolutionary origin of type IV classical cadherins in arthropods.
PMID:28623893
ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services.
PMID:28620454
Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1.
PMID:28530709
On patterns and re-use in bioinformatics databases.
PMID:28525546
Analysis of CFB, a cytokinin-responsive gene of Arabidopsis thaliana encoding a novel F-box protein regulating sterol biosynthesis.
PMID:28505379
Novel β-Lactamase blaARL in Staphylococcus arlettae.
PMID:28497118
ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data.
PMID:28472320
Comparative analysis of the predicted secretomes of Rosaceae scab pathogens Venturia inaequalis and V. pirina reveals expanded effector families and putative determinants of host range.
PMID:28464870
Analysis of the potato calcium-dependent protein kinase family and characterization of StCDPK7, a member induced upon infection with Phytophthora infestans.
PMID:28451820
Programmatic access to bioinformatics tools from EMBL-EBI update: 2017.
PMID:28431173
Noumeavirus replication relies on a transient remote control of the host nucleus.
PMID:28429720
Identification and analysis of mutational hotspots in oncogenes and tumour suppressors.
PMID:28423505
GibbsCluster: unsupervised clustering and alignment of peptide sequences.
PMID:28407089
APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins.
PMID:28334975
Novel methicillin resistance gene mecD in clinical Macrococcus caseolyticus strains from bovine and canine sources.
PMID:28272476
Ornithine Aminotransferase, an Important Glutamate-Metabolizing Enzyme at the Crossroads of Multiple Metabolic Pathways.
PMID:28272331
Draft Genome Sequence of Desulfuromonas acetexigens Strain 2873, a Novel Anode-Respiring Bacterium.
PMID:28254969
A Review of Functional Motifs Utilized by Viruses.
PMID:28248213
Time-resolved Phosphoproteome Analysis of Paradoxical RAF Activation Reveals Novel Targets of ERK.
PMID:28188228
Decay of Sexual Trait Genes in an Asexual Parasitoid Wasp.
PMID:28172869
From the research laboratory to the database: the Caenorhabditis elegans kinome in UniProtKB.
PMID:28159896
Protein Bioinformatics Databases and Resources.
PMID:28150231
Function annotation of peptides generated from the non-coding regions of D. melanogaster genome.
PMID:28149056
A Legionella Effector Disrupts Host Cytoskeletal Structure by Cleaving Actin.
PMID:28129393
The essential requirement of an animal heme peroxidase protein during the wing maturation process in Drosophila.
PMID:28077066
Transcriptomic analysis of human norovirus NS1-2 protein highlights a multifunctional role in murine monocytes.
PMID:28056773
The Papillomavirus Episteme: a major update to the papillomavirus sequence database.
PMID:28053164
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes.
PMID:28053160
An expressed, endogenous Nodavirus-like element captured by a retrotransposon in the genome of the plant parasitic nematode Bursaphelenchus xylophilus.
PMID:28004836
A bioinformatics pipeline to search functional motifs within whole-proteome data: a case study of poxviruses.
PMID:28000080
The Streptococcus gordonii Adhesin CshA Protein Binds Host Fibronectin via a Catch-Clamp Mechanism.
PMID:27920201
Defining Substrate Specificities for Lipase and Phospholipase Candidates.
PMID:27911408
InterPro in 2017-beyond protein family and domain annotations.
PMID:27899635
De-novo protein function prediction using DNA binding and RNA binding proteins as a test case.
PMID:27869118
Diversity, evolution and expression profiles of histone acetyltransferases and deacetylases in oomycetes.
PMID:27852223
Molecular cloning, expression, IgE binding activities and in silico epitope prediction of Per a 9 allergens of the American cockroach.
PMID:27840974
Phosphorylation of poly(rC) binding protein 1 (PCBP1) contributes to stabilization of mu opioid receptor (MOR) mRNA via interaction with AU-rich element RNA-binding protein 1 (AUF1) and poly A binding protein (PABP).
PMID:27836661
Convert your favorite protein modeling program into a mutation predictor: "MODICT".
PMID:27760515
Ohgata, the Single Drosophila Ortholog of Human Cereblon, Regulates Insulin Signaling-dependent Organismic Growth.
PMID:27702999
Genome-wide Identification of TCP Family Transcription Factors from Populus euphratica and Their Involvement in Leaf Shape Regulation.
PMID:27605130
Biophysical Analysis of the N-Terminal Domain from the Human Protein Phosphatase 1 Nuclear Targeting Subunit PNUTS Suggests an Extended Transcription Factor TFIIS-Like Fold.
PMID:27591855
Deep targeted sequencing in pediatric acute lymphoblastic leukemia unveils distinct mutational patterns between genetic subtypes and novel relapse-associated genes.
PMID:27590521
Genome-wide analysis of lectin receptor-like kinases in Populus.
PMID:27580945
G23D: Online tool for mapping and visualization of genomic variants on 3D protein structures.
PMID:27565432
Evolution of the Twist Subfamily Vertebrate Proteins: Discovery of a Signature Motif and Origin of the Twist1 Glycine-Rich Motifs in the Amino-Terminus Disordered Domain.
PMID:27556926
A Fast Alignment-Free Approach for De Novo Detection of Protein Conserved Regions.
PMID:27552220
RNA Remodeling Activity of DEAD Box Proteins Tuned by Protein Concentration, RNA Length, and ATP.
PMID:27546789
A Conserved Nuclear Cyclophilin Is Required for Both RNA Polymerase II Elongation and Co-transcriptional Splicing in Caenorhabditis elegans.
PMID:27541139
Comparative Genomics of the Sigatoka Disease Complex on Banana Suggests a Link between Parallel Evolutionary Changes in Pseudocercospora fijiensis and Pseudocercospora eumusae and Increased Virulence on the Banana Host.
PMID:27513322
Flavoprotein-Mediated Tellurite Reduction: Structural Basis and Applications to the Synthesis of Tellurium-Containing Nanostructures.
PMID:27507969
N-Terminal Peptide Detection with Optimized Peptide-Spectrum Matching and Streamlined Sequence Libraries.
PMID:27498768
Evolutionary and functional analysis of mulberry type III polyketide synthases.
PMID:27487946
Novel Metal Cation Resistance Systems from Mutant Fitness Analysis of Denitrifying Pseudomonas stutzeri.
PMID:27474723
Genome-wide identification, characterisation and expression profiles of calcium-dependent protein kinase genes in barley (Hordeum vulgare L.).
PMID:27447459
Machine Learning of Protein Interactions in Fungal Secretory Pathways.
PMID:27441920
Identification of Preferred DNA-Binding Sites for the Thermus thermophilus Transcriptional Regulator SbtR by the Combinatorial Approach REPSA.
PMID:27428627
Loss of function of the Drosophila Ninein-related centrosomal protein Bsg25D causes mitotic defects and impairs embryonic development.
PMID:27422905
LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system.
PMID:27387560
Reannotation of Yersinia pestis Strain 91001 Based on Omics Data.
PMID:27382076
Misannotation Awareness: A Tale of Two Gene-Groups.
PMID:27379147
Extent of pre-translational regulation for the control of nucleocytoplasmic protein localization.
PMID:27342569
The Ensembl gene annotation system.
PMID:27337980
DFLpred: High-throughput prediction of disordered flexible linker regions in protein sequences.
PMID:27307636
Consensus protein design.
PMID:27274091
VESPUCCI: Exploring Patterns of Gene Expression in Grapevine.
PMID:27242836
Genome- wide characterization of Nuclear Factor Y (NF-Y) gene family of sorghum [Sorghum bicolor (L.) Moench]: a bioinformatics approach.
PMID:27186017
The Immature Fiber Mutant Phenotype of Cotton (Gossypium hirsutum) Is Linked to a 22-bp Frame-Shift Deletion in a Mitochondria Targeted Pentatricopeptide Repeat Gene.
PMID:27172184
High-performance web services for querying gene and variant annotation.
PMID:27154141
UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB.
PMID:27153729
TOPDOM: database of conservatively located domains and motifs in proteins.
PMID:27153630
Rational Structure-Based Rescaffolding Approach to De Novo Design of Interleukin 10 (IL-10) Receptor-1 Mimetics.
PMID:27123592
Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource.
PMID:27087306
PAT: predictor for structured units and its application for the optimization of target molecules for the generation of synthetic antibodies.
PMID:27039071
Topology based identification and comprehensive classification of four-transmembrane helix containing proteins (4TMs) in the human genome.
PMID:27030248
GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations.
PMID:26994912
Structural Studies of Medicago truncatula Histidinol Phosphate Phosphatase from Inositol Monophosphatase Superfamily Reveal Details of Penultimate Step of Histidine Biosynthesis in Plants.
PMID:26994138
Structural and kinetic studies on RosA, the enzyme catalysing the methylation of 8-demethyl-8-amino-d-riboflavin to the antibiotic roseoflavin.
PMID:26913589
Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC).
PMID:26911138
What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira.
PMID:26890609
Identification of new palmitoylated proteins in Toxoplasma gondii.
PMID:26825284
Insight into the Salivary Gland Transcriptome of Lygus lineolaris (Palisot de Beauvois).
PMID:26789269
An evaluation of the accuracy and speed of metagenome analysis tools.
PMID:26778510
3DIANA: 3D Domain Interaction Analysis: A Toolbox for Quaternary Structure Modeling.
PMID:26772592
Use of a Probabilistic Motif Search to Identify Histidine Phosphotransfer Domain-Containing Proteins.
PMID:26751210
Why do Sequence Signatures Predict Enzyme Mechanism? Homology versus Chemistry.
PMID:26740739
Requirement for the E1 Helicase C-Terminal Domain in Papillomavirus DNA Replication In Vivo.
PMID:26739052
Whole genome sequence and manual annotation of Clostridium autoethanogenum, an industrially relevant bacterium.
PMID:26692227
Kiwifruit Information Resource (KIR): a comparative platform for kiwifruit genomics.
PMID:26656885
Cloning and Characterization of Two Potent Kunitz Type Protease Inhibitors from Echinococcus granulosus.
PMID:26645974
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases.
PMID:26615188
Eukaryotic Components Remodeled Chloroplast Nucleoid Organization during the Green Plant Evolution.
PMID:26608058
Arabidopsis Rab Geranylgeranyltransferases Demonstrate Redundancy and Broad Substrate Specificity in Vitro.
PMID:26589801
Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA.
PMID:26581084
Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica.
PMID:26531864
Protein O-Glucosyltransferase 1 (POGLUT1) Promotes Mouse Gastrulation through Modification of the Apical Polarity Protein CRUMBS2.
PMID:26496195
A multi-objective optimization approach accurately resolves protein domain architectures.
PMID:26458889
Dissecting Leishmania infantum Energy Metabolism - A Systems Perspective.
PMID:26367006
Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View.
PMID:26366735
Evolution of plant δ(1)-pyrroline-5-carboxylate reductases from phylogenetic and structural perspectives.
PMID:26284089
Amplitude spectrum distance: measuring the global shape divergence of protein fragments.
PMID:26268224
OsPRR37 and Ghd7 are the major genes for general combining ability of DTH, PH and SPP in rice.
PMID:26238949
Functional expression of a novel Kunitz type protease inhibitor from the human blood fluke Schistosoma mansoni.
PMID:26238343
Molecular mechanisms of the non-coenzyme action of thiamin in brain: biochemical, structural and pathway analysis.
PMID:26212886
Database of RNA binding protein expression and disease dynamics (READ DB).
PMID:26210853
Evolutionary Influenced Interaction Pattern as Indicator for the Investigation of Natural Variants Causing Nephrogenic Diabetes Insipidus.
PMID:26180540
In-depth characterization of trypsin-like serine peptidases in the midgut of the sugar fed Culex quinquefasciatus.
PMID:26174750
Bayesian phylogeny analysis of vertebrate serpins illustrates evolutionary conservation of the intron and indels based six groups classification system from lampreys for ∼500 MY.
PMID:26157611
SInCRe-structural interactome computational resource for Mycobacterium tuberculosis.
PMID:26130660
A Database of Plastid Protein Families from Red Algae and Apicomplexa and Expression Regulation of the moeB Gene.
PMID:26114108
Comparative Analysis of Apicoplast-Targeted Protein Extension Lengths in Apicomplexan Parasites.
PMID:26114107
Early origin and adaptive evolution of the GW182 protein family, the key component of RNA silencing in animals.
PMID:26106978
IBS: an illustrator for the presentation and visualization of biological sequences.
PMID:26069263
Looking below the surface of nicotinic acetylcholine receptors.
PMID:26067101
The structure of hookworm platelet inhibitor (HPI), a CAP superfamily member from Ancylostoma caninum.
PMID:26057788
Expression of active trypsin-like serine peptidases in the midgut of sugar-feeding female Anopheles aquasalis.
PMID:26021986
Garlic (A. sativum L.) alliinase gene family polymorphism reflects bolting types and cysteine sulphoxides content.
PMID:25997498
Comparative transcriptome profiling approach to glean virulence and immunomodulation-related genes of Fasciola hepatica.
PMID:25956885
Genome-wide identification and evolution of HECT genes in soybean.
PMID:25894222
Amelotin: an enamel matrix protein that experienced distinct evolutionary histories in amphibians, sauropsids and mammals.
PMID:25884299
Statistical approaches to detecting and analyzing tandem repeats in genomic sequences.
PMID:25853125
Can the natural diversity of quorum-sensing advance synthetic biology?
PMID:25806368
Ankyrin domain of myosin 16 influences motor function and decreases protein phosphatase catalytic activity.
PMID:25775934
FR database 1.0: a resource focused on fruit development and ripening.
PMID:25725058
Identification of divergent WH2 motifs by HMM-HMM alignments.
PMID:25616999
A Phospho-SIM in the Antiviral Protein PML is Required for Its Recruitment to HSV-1 Genomes.
PMID:25513827
Identification of two missense mutations of ERCC6 in three Chinese sisters with Cockayne syndrome by whole exome sequencing.
PMID:25463447
Molecular basis for DPY-30 association to COMPASS-like and NURF complexes.
PMID:25456412
The InterPro protein families database: the classification resource after 15 years.
PMID:25428371
CFam: a chemical families database based on iterative selection of functional seeds and seed-directed compound clustering.
PMID:25414339
Bioinformatic analysis reveals genome size reduction and the emergence of tyrosine phosphorylation site in the movement protein of New World bipartite begomoviruses.
PMID:25383632
WDSPdb: a database for WD40-repeat proteins.
PMID:25348404
Genome wide in silico characterization of Dof gene families of pigeonpea (Cajanus cajan (L) Millsp.).
PMID:25344821
Homology modeling and comparative profiling of superoxide dismutase among extremophiles: exiguobacterium as a model organism.
PMID:25320445
Two structural motifs within canonical EF-hand calcium-binding domains identify five different classes of calcium buffers and sensors.
PMID:25313560
Molecular cloning and in-silico characterization of high temperature stress responsive pAPX gene isolated from heat tolerant Indian wheat cv. Raj 3765.
PMID:25304397
SMART: recent updates, new developments and status in 2015.
PMID:25300481
Chlorovirus Skp1-binding ankyrin repeat protein interplay and mimicry of cellular ubiquitin ligase machinery.
PMID:25253343
tBRD-1 selectively controls gene activity in the Drosophila testis and interacts with two new members of the bromodomain and extra-terminal (BET) family.
PMID:25251222
Characterizing the pocketome of Mycobacterium tuberculosis and application in rationalizing polypharmacological target selection.
PMID:25220818
Bioinformatic characterisation of genes encoding cell wall degrading enzymes in the Phytophthora parasitica genome.
PMID:25214042
One origin for metallo-β-lactamase activity, or two? An investigation assessing a diverse set of reconstructed ancestral sequences based on a sample of phylogenetic trees.
PMID:25185655
Developmentally-Dynamic Murine Brain Proteomes and Phosphoproteomes Revealed by Quantitative Proteomics.
PMID:25177544
Expression of α-subunit of α-glucosidase II in adult mouse brain regions and selected organs.
PMID:25131991
A comprehensive reference transcriptome resource for the common house spider Parasteatoda tepidariorum.
PMID:25118601
The genome and occlusion bodies of marine Penaeus monodon nudivirus (PmNV, also known as MBV and PemoNPV) suggest that it should be assigned to a new nudivirus genus that is distinct from the terrestrial nudiviruses.
PMID:25063321
The PML-associated protein DEK regulates the balance of H3.3 loading on chromatin and is important for telomere integrity.
PMID:25049225
Identification of an ideal-like fingerprint for a protein fold using overlapped conserved residues based approach.
PMID:25008052
Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef).
PMID:25007843
Systems biology in the context of big data and networks.
PMID:24982882
CutProtFam-Pred: detection and classification of putative structural cuticular proteins from sequence alone, based on profile hidden Markov models.
PMID:24978609
The structure and dynamics of BmR1 protein from Brugia malayi: in silico approaches.
PMID:24950179
C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses.
PMID:24915771
DUF581 is plant specific FCS-like zinc finger involved in protein-protein interaction.
PMID:24901469
Apolipoprotein L2 contains a BH3-like domain but it does not behave as a BH3-only protein.
PMID:24901046
In Silico Prediction of T and B Cell Epitopes of Der f 25 in Dermatophagoides farinae.
PMID:24895543
The structural and functional signatures of proteins that undergo multiple events of post-translational modification.
PMID:24888500
From sequence to enzyme mechanism using multi-label machine learning.
PMID:24885296
Integrating omics technologies to study pulmonary physiology and pathology at the systems level.
PMID:24802001
PredictProtein--an open resource for online prediction of protein structural and functional features.
PMID:24799431
Mining a database of single amplified genomes from Red Sea brine pool extremophiles-improving reliability of gene function prediction using a profile and pattern matching algorithm (PPMA).
PMID:24778629
Cloning and functional characterization of three branch point oxidosqualene cyclases from Withania somnifera (L.) dunal.
PMID:24770414
Proteomic analysis of Daphnia magna hints at molecular pathways involved in defensive plastic responses.
PMID:24762235
Prediction and analysis of canonical EF hand loop and qualitative estimation of Ca²⁺ binding affinity.
PMID:24760183
A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i).
PMID:24742296
What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins.
PMID:24723265
Extracellular DNA metabolism in Haloferax volcanii.
PMID:24600440
Improving transcriptome construction in non-model organisms: integrating manual and automated gene definition in Emiliania huxleyi.
PMID:24559402
Multimethylation of Rickettsia OmpB catalyzed by lysine methyltransferases.
PMID:24497633
Functional understanding of the diverse exon-intron structures of human GPCR genes.
PMID:24467758
BurrH: a new modular DNA binding protein for genome engineering.
PMID:24452192
InterProScan 5: genome-scale protein function classification.
PMID:24451626
Transient fusion and selective secretion of vesicle proteins in Phytophthora nicotianae zoospores.
PMID:24392285
A special member of the rice SRO family, OsSRO1c, mediates responses to multiple abiotic stresses through interaction with various transcription factors.
PMID:24337801
topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins.
PMID:24302577
Graph representation of high-dimensional alpha-helical membrane protein data.
PMID:24294896
Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application).
PMID:24256031
The human protein PRR14 tethers heterochromatin to the nuclear lamina during interphase and mitotic exit.
PMID:24209742
Differential expression of CPKs and cytosolic Ca2+ variation in resistant and susceptible apple cultivars (Malus x domestica) in response to the pathogen Erwinia amylovora and mechanical wounding.
PMID:24192013
EBI metagenomics--a new resource for the analysis and archiving of metagenomic data.
PMID:24165880
Two distinct sensing pathways allow recognition of Klebsiella pneumoniae by Dictyostelium amoebae.
PMID:24128258
PPR proteins of green algae.
PMID:24021981
Identification and characterization of a periplasmic aminoacyl-phosphatidylglycerol hydrolase responsible for Pseudomonas aeruginosa lipid homeostasis.
PMID:23792962
A high molecular-mass Anoxybacillus sp. SK3-4 amylopullulanase: characterization and its relationship in carbohydrate utilization.
PMID:23759984
pfsearchV3: a code acceleration and heuristic to search PROSITE profiles.
PMID:23505298
The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection.
PMID:23203983