Tag: protein sequence motifs and active sites

InterPro is a resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this way, InterPro uses predictive models, known as si ...

PROSITE is a database of protein families and domains. PROSITE consists of documentation entries describing protein domains, families and functional sites as well as associated patterns and profiles to identify them.

PhosphoSite Plus provides extensive information on mammalian post-translational modifications (PTMs). The resource supersedes PhosphoSite a mammalian protein database that provides information about in vivo phosphorylation sites.

PRINTS is a collection of groups of conserved protein motifs, called fingerprints, used to define a protein family. A fingerprint is a group of conserved motifs used to characterize a protein family. Usually, the motifs do not overlap, though they ma ...

Phosphorylation sites in various species identified by mass spectrometry

The primary goal of VDJdb is to facilitate access to existing information on T-cell receptor antigen specificities, i.e. the ability to recognize certain epitopes in certain MHC contexts. Our mission is to both aggregate the scarce TCR specificity in ...

Protein-RNA Interface Database

Mimotope database, active site-mimicking peptides selected from phage-display libraries

fireDB is a database of Protein Data Bank structures, ligands and annotated functional site residues. The database can be accessed by PDB codes or UniProt accession numbers as well as keywords.

Polyglutamine Repeats in Proteins

Linear motifs in alpha-helical transmembrane proteins

Mutations in Ligand Binding Sites gene DataBase

Projections of protein functional Sites on Exons

Phospho3D is a database of three-dimensional structures of phosphorylation sites which stores information retrieved from the phospho.ELM database and which is enriched with structural information and annotations at the residue level. The database als ...

Dictionary of binding sites in proteins

Comprehensive peptide signature database

Signature sequences at the protein N- and C-termini

3D structure of protein functional sites

Search tools for short functional motifs involved in posttranslational modifications, binding to other proteins, nucleic acids, or small molecules

Electrostatic potentials and hydrophobic properties of the active sites

NBDB database provides profiles of Elementary Functional Loops (EFLs) involved in binding of nucleotide-containing ligands. Each EFL in form of a PSSM (position-specific scoring matrix) profile is complemented with the information on SCOP entities, s ...

O-GLYCBASE is a database of glycoproteins with O-linked and C-linked glycosylation sites. Entries with at least one experimentally verified glycosylation site have been compiled from protein sequence databases and literature. Each entry contains info ...

The ProRule database is a new section of PROSITE, which contains additional information about profiles. ProRule provides position specific-information about functionally and structurally relevant residues found in PROSITE profiles, as well as specifi ...

ASC (Active Sequences Collection) is a database of short amino acid sequences with known biological activity. The current version is substantially improved as compared to the previous release; it now includes more than 1300 different active short pro ...

Classifying proteins into families and super-families allows identification of functionally mportant conserved domains. The motifs and scoring matrices derived from such conserved regions provide computational tools to recognize similar patterns in n ...

COMe (Co-Ordination of Metals etc.) represents the classification of bioinorganic proteins. COMe consists of three types of entries: "bioinorganic motif", "molecule", and "complex protein"; each entry is assigned a unique identifier. A bioinorganic m ...

With active studying of disordered regions and their function we focus our attention on manifold long repeats of one amino acid (homorepeats) (1). Our database includes 122 proteomes, 97 eukaryotic and 25 bacterial ones that can be divided into 9 kin ...