R3SP63 last accessed: 2022-11-04

Conserved domain database CDD
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:05.829198

cdd
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:05.829198

Other names: CDD, Conserved Domain database, formerly: Conserved Domains and Protein Classification, Conserved domain database CDD, cdd

The Conserved Domain Database (CDD) brings together several collections of multiple sequence alignments representing conserved domains, including NCBI-curated domains, which use 3D-structure information to explicitly to define domain boundaries and provide insights into sequence/structure/function relationships, as well as domain models imported from a number of external source databases (Pfam, SMART, COG, NCBI Protein Clusters, TIGRFAM, NCBIfam). NCBI-curated models are organized hierarchically into families, sub- and super-families, and come with annotation of functional sites.

Webpage:

https://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml

Licence:

Name: NCBI Data Policies and Disclaimer
URL: http://www.ncbi.nlm.nih.gov/home/about/policies.shtml

Publications: (10)

Publications
More detailed information about this field from each metasource.

CDD: a Conserved Domain Database for the functional annotation of proteins
PMID: 21109532
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:05.829198

CDD: NCBI's conserved domain database
PMID: 25414356
metasource: Fairsharing.org
version: FAIRsharing.org: CDD; Conserved Domain Database; DOI: https://doi.org/10.25504/FAIRsharing.b9st5p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:05.829198

CDD/SPARCLE: functional classification of proteins via subfamily domain architectures
PMID: 27899674
metasource: Fairsharing.org
version: FAIRsharing.org: CDD; Conserved Domain Database; DOI: https://doi.org/10.25504/FAIRsharing.b9st5p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

CDD: specific functional annotation with the Conserved Domain Database
PMID: 18984618
metasource: Fairsharing.org
version: FAIRsharing.org: CDD; Conserved Domain Database; DOI: https://doi.org/10.25504/FAIRsharing.b9st5p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:05.829198

CDD/SPARCLE: the conserved domain database in 2020
PMID: 31777944
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:05.829198

CDD: a Conserved Domain Database for protein classification
PMID: 15608175
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:05.829198

CDD: conserved domains and protein three-dimensional structure
PMID: 23197659
metasource: Fairsharing.org
version: FAIRsharing.org: CDD; Conserved Domain Database; DOI: https://doi.org/10.25504/FAIRsharing.b9st5p; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:05.829198

CDD: a conserved domain database for interactive domain family analysis
PMID: 17135202
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:05.829198

CDD: a database of conserved domain alignments with links to domain three-dimensional structure
PMID: 11752315
metasource: bio.tools
version: extracted_at: 2022-11-04T11:24:05.829198

http://dx.doi.org/10.1093/nar/
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

CDD: a Conserved Domain Database for the functional annotation of proteins PubMed citations: 1423.

1423 articles citing: CDD: a Conserved Domain Database for the functional annotation of proteins

Structural and Functional Characterization of CreFH1, the Frataxin Homolog from Chlamydomonas reinhardtii. PMID:35893635
Isolation of Novel Xanthomonas Phages Infecting the Plant Pathogens X. translucens and X. campestris. PMID:35891434
Identification and Characterization Roles of Phytoene Synthase (PSY) Genes in Watermelon Development. PMID:35885972
Recent Acquisition of Functional m6A RNA Demethylase Domain in Orchid Ty3/Gypsy Elements. PMID:35860540
Genome-wide identification and comparative evolutionary analysis of sorbitol metabolism pathway genes in four Rosaceae species and three model plants. PMID:35836134
In silico structural and functional characterization of Antheraea mylitta cocoonase. PMID:35816268
Loci underlying leaf agronomic traits identified by re-sequencing celery accessions based on an assembled genome. PMID:35784787
Genome-Wide Characterization of Superoxide Dismutase (SOD) Genes in Daucus carota: Novel Insights Into Structure, Expression, and Binding Interaction With Hydrogen Peroxide (H2O2) Under Abiotic Stress Condition. PMID:35783965
VisProDom: an interactive Shiny/R application for displaying protein domains with transcriptional features. PMID:35761171
Mutational Analysis of Vibrio fischeri c-di-GMP-Modulating Genes Reveals Complex Regulation of Motility. PMID:35758751
Thousands of small, novel genes predicted in global phage genomes. PMID:35732113
Characterization and Complete Genomic Analysis of Vibrio Parahaemolyticus-Infecting Phage KIT05. PMID:35704129
A chromosome-level genome assembly of Artocarpus nanchuanensis (Moraceae), an extremely endangered fruit tree. PMID:35701376
Decoding the byssus fabrication by spatiotemporal secretome analysis of scallop foot. PMID:35685371
An Emerging Duck Egg-Reducing Syndrome Caused by a Novel Picornavirus Containing Seven Putative 2A Peptides. PMID:35632674
Secretome Profiling by Proteogenomic Analysis Shows Species-Specific, Temperature-Dependent, and Putative Virulence Proteins of Pythium insidiosum. PMID:35628782
A regulatory linkage between scytonemin production and hormogonia differentiation in Nostoc punctiforme. PMID:35620423
Chromosome-scale genome assembly of an important medicinal plant honeysuckle. PMID:35610245
Chromosome-level genome assembly of the diploid blueberry Vaccinium darrowii provides insights into its subtropical adaptation and cuticle synthesis. PMID:35605198
CFVisual: an interactive desktop platform for drawing gene structure and protein architecture. PMID:35562653
Understanding Diversity, Evolution, and Structure of Small Heat Shock Proteins in Annelida Through in Silico Analyses. PMID:35530508
ImitateDB: A database for domain and motif mimicry incorporating host and pathogen protein interactions. PMID:35487995
Chromosome-Level Genome Assembly of the Hemiparasitic Taxillus chinensis (DC.) Danser. PMID:35482027
Genome-wide identification and expression analysis of the SWEET gene family in daylily (Hemerocallis fulva) and functional analysis of HfSWEET17 in response to cold stress. PMID:35468723
A Chromosome-Level Reference Genome of Chinese Balloon Flower (Platycodon grandiflorus). PMID:35464833
In silico prediction and interaction of resveratrol on methyl-CpG binding proteins by molecular docking and MD simulations study. PMID:35425086
Genomic evidence for homoploid hybrid speciation between ancestors of two different genera. PMID:35418567
Integration of Aspergillus niger transcriptomic profile with metabolic model identifies potential targets to optimise citric acid production from lignocellulosic hydrolysate. PMID:35418297
Genome-Wide Identification, Expression Pattern and Sequence Variation Analysis of SnRK Family Genes in Barley. PMID:35406955
Gene loss, genome rearrangement, and accelerated substitution rates in plastid genome of Hypericum ascyron (Hypericaceae). PMID:35321651
Odorant Binding Proteins (OBPs) and Odorant Receptors (ORs) of Anopheles stephensi: Identification and comparative insights. PMID:35316281
A High-Quality Reference Genome Sequence and Genetic Transformation System of Aralia elata. PMID:35300010
Identification and characterization of the key enzyme in the biosynthesis of the neurotoxin β-ODAP in grass pea. PMID:35271851
A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs. PMID:35211148
Unraveling the Genome Sequence of Plant Growth Promoting Aspergillus niger (CSR3) Provides Insight into the Synthesis of Secondary Metabolites and Its Comparative Genomics. PMID:35205861
The Caspase Homologues in Scallop Chlamys farreri and Their Expression Responses to Toxic Dinoflagellates Exposure. PMID:35202135
Insights into glucosinolate accumulation and metabolic pathways in Isatis indigotica Fort. PMID:35193497
Uip4p modulates nuclear pore complex function in Saccharomyces cerevisiae. PMID:35171083
Chromosome-level genome assembly of Aristolochia contorta provides insights into the biosynthesis of benzylisoquinoline alkaloids and aristolochic acids. PMID:35147168
Chromosome-level genome assembly of the fully mycoheterotrophic orchid Gastrodia elata. PMID:35100375
Isolation and Characterization of a Novel Temperate Escherichia coli Bacteriophage, Kapi1, Which Modifies the O-Antigen and Contributes to the Competitiveness of Its Host during Colonization of the Murine Gastrointestinal Tract. PMID:35073745
Genome-Wide Identification and Co-Expression Analysis of ARF and IAA Family Genes in Euscaphis konishii: Potential Regulators of Triterpenoids and Anthocyanin Biosynthesis. PMID:35069676
Characterization and regulation mechanism analysis of ubiquitin-conjugating family genes in strawberry reveals a potential role in fruit ripening. PMID:35045827
Newly identified HMO-2011-type phages reveal genomic diversity and biogeographic distributions of this marine viral group. PMID:35022515
Chromosome-level genome assembly of Bactrocera dorsalis reveals its adaptation and invasion mechanisms. PMID:35017661
Chromosome-level genome assembly of Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis. PMID:35017643
In-silico characterization and structure-based functional annotation of a hypothetical protein from Campylobacter jejuni involved in propionate catabolism. PMID:35012287
Identification of Partner Proteins of the Algae Klebsormidium nitens NO Synthases: Toward a Better Understanding of NO Signaling in Eukaryotic Photosynthetic Organisms. PMID:35003186
A Chromosome-Level Genome Assembly of the Pygmy Mole Cricket Xya riparia. PMID:34999819
Structural basis for effector recognition by an antibacterial type IV secretion system. PMID:34983846
Chromosome Genome Assembly of Cromileptes altivelis Reveals Loss of Genome Fragment in Cromileptes Compared with Epinephelus Species. PMID:34946822
High natural PHA production from acetate in Cobetia sp. MC34 and Cobetia marina DSM 4741T and in silico analyses of the genus specific PhaC2 polymerase variant. PMID:34930259
Re-examination of the APETALA2/Ethylene-Responsive Factor Gene Family in Barley (Hordeum vulgare L.) Indicates a Role in the Regulation of Starch Synthesis. PMID:34925430
Two-Component System Genes in Sorghum bicolor: Genome-Wide Identification and Expression Profiling in Response to Environmental Stresses. PMID:34899869
Investigation of Antidepressant Properties of Yohimbine by Employing Structure-Based Computational Assessments. PMID:34889886
Chromosome-Level Genome Assembly of the Burbot (Lota lota) Using Nanopore and Hi-C Technologies. PMID:34887901
Cross-species analysis of viral nucleic acid interacting proteins identifies TAOKs as innate immune regulators. PMID:34853303
Nitrogen-Doped Carbon Dots for Selective and Rapid Gene Detection of Human Papillomavirus Causing Cervical Cancer. PMID:34841146
Genome-wide identification and expression analysis of sucrose nonfermenting-1-related protein kinase (SnRK) genes in Triticum aestivum in response to abiotic stress. PMID:34795369
Genome of the estuarine oyster provides insights into climate impact and adaptive plasticity. PMID:34773106
Synthaser: a CD-Search enabled Python toolkit for analysing domain architecture of fungal secondary metabolite megasynth(et)ases. PMID:34763725
Evaluating functional ligand-GPCR interactions in cell-based assays. PMID:34752330
Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch. PMID:34711171
Lineage-Specific Variation in IR Boundary Shift Events, Inversions, and Substitution Rates among Caprifoliaceae s.l. (Dipsacales) Plastomes. PMID:34638831
Molecular characterization of superoxide dismutase and catalase genes, and the induction of antioxidant genes under the zinc oxide nanoparticle-induced oxidative stress in air-breathing magur catfish (Clarias magur). PMID:34609607
Novel MYO1D Missense Variant Identified Through Whole Exome Sequencing and Computational Biology Analysis Expands the Spectrum of Causal Genes of Laterality Defects. PMID:34589502
Mapping the glycosyltransferase fold landscape using interpretable deep learning. PMID:34580305
Optimizing Efficient RNAi-Mediated Control of Hemipteran Pests (Psyllids, Leafhoppers, Whitefly): Modified Pyrimidines in dsRNA Triggers. PMID:34579315
In Silico Characterization of Calcineurin from Pathogenic Obligate Intracellular Trypanosomatids: Potential New Biological Roles. PMID:34572535
StAR-Related Lipid Transfer (START) Domains Across the Rice Pangenome Reveal How Ontogeny Recapitulated Selection Pressures During Rice Domestication. PMID:34567086
Genome-Wide Investigation of SBT Family Genes in Pineapple and Functional Analysis of AcoSBT1.12 in Floral Transition. PMID:34557223
Incomplete tricarboxylic acid cycle and proton gradient in Pandoravirus massiliensis: is it still a virus? PMID:34556816
AprGPD: the apricot genomic and phenotypic database. PMID:34556150
Role of Dicer-Dependent RNA Interference in Regulating Mycoparasitic Interactions. PMID:34549988
The citron homology domain as a scaffold for Rho1 signaling. PMID:34544876
The GRAS gene family and its roles in seed development in litchi (Litchi chinensis Sonn). PMID:34535087
PathFams: statistical detection of pathogen-associated protein domains. PMID:34521345
Evolution of Functional Diversity in the Holozoan Tyrosine Kinome. PMID:34515793
DNA Methyltransferases Contribute to Cold Tolerance in Ticks Dermacentor silvarum and Haemaphysalis longicornis (Acari: Ixodidae). PMID:34513977
Characterization and Dynamics of Intracellular Gene Transfer in Plastid Genomes of Viola (Violaceae) and Order Malpighiales. PMID:34512682
The chromosome-scale genome of Magnolia officinalis provides insight into the evolutionary position of magnoliids. PMID:34505009
Genome-wide analysis of OSCA gene family members in Vigna radiata and their involvement in the osmotic response. PMID:34493199
Evolution of Methyltransferase-Like (METTL) Proteins in Metazoa: A Complex Gene Family Involved in Epitranscriptomic Regulation and Other Epigenetic Processes. PMID:34480573
Identification of anti-horn fly vaccine antigen candidates using a reverse vaccinology approach. PMID:34479607
In silico analysis and molecular identification of an anaphase-promoting complex homologue from human pathogen Entamoeba histolytica. PMID:34468883
The Natterin Proteins Diversity: A Review on Phylogeny, Structure, and Immune Function. PMID:34437409
Evolution of mechanisms controlling epithelial morphogenesis across animals: new insights from dissociation-reaggregation experiments in the sponge Oscarella lobularis. PMID:34418961
BB0562 is a nutritional virulence determinant with lipase activity important for Borrelia burgdorferi infection and survival in fatty acid deficient environments. PMID:34415955
A cysteine-rich receptor-like protein kinase CaCKR5 modulates immune response against Ralstonia solanacearum infection in pepper. PMID:34412592
Identification of non-ribosomal peptide synthetase in Ganoderma boninense Pat. that was expressed during the interaction with oil palm. PMID:34381084
Genome Characterization of Nocturne116, Novel Lactococcus lactis-Infecting Phage Isolated from Moth. PMID:34361975
Genome of the Southern Giant Petrel Assembled Using Third-Generation DNA Sequencing and Linked Reads Reveals Evolutionary Traits of Southern Avian. PMID:34359174
Comparative transcriptome analysis reveals regulatory network and regulators associated with proanthocyanidin accumulation in persimmon. PMID:34325657
Comparative Repeat Profiling of Two Closely Related Conifers (Larix decidua and Larix kaempferi) Reveals High Genome Similarity With Only Few Fast-Evolving Satellite DNAs. PMID:34322154
Dissecting the chromosome-level genome of the Asian Clam (Corbicula fluminea). PMID:34294825
Genomic diversity, life strategies and ecology of marine HTVC010P-type pelagiphages. PMID:34227930
A highly efficient regeneration, genetic transformation system and induction of targeted mutations using CRISPR/Cas9 in Lycium ruthenicum. PMID:34217355
Evolution of the MLO gene families in octoploid strawberry (Fragaria ×ananassa) and progenitor diploid species identified potential genes for strawberry powdery mildew resistance. PMID:34193853
Genome-wide identification of AP2/EREBP in Fragaria vesca and expression pattern analysis of the FvDREB subfamily under drought stress. PMID:34174836
An SNP Mutation of Gene RsPP Converts Petal Color From Purple to White in Radish (Raphanus sativus L.). PMID:34149748
A Chromosome-Level Genome Assembly of the Spotted Scat (Scatophagus argus). PMID:34146395
Versatile control of the CDC48 segregase by the plant UBX-containing (PUX) proteins. PMID:34141135
Heterologous expression of cyanobacterial PCS confers augmented arsenic and cadmium stress tolerance and higher artemisinin in Artemisia annua hairy roots. PMID:34122662
Aux/IAA and ARF Gene Families in Salix suchowensis: Identification, Evolution, and Dynamic Transcriptome Profiling During the Plant Growth Process. PMID:34122487
Characterization of APX and APX-R gene family in Brassica juncea and B. rapa for tolerance against abiotic stresses. PMID:34115169
TcpC inhibits neutrophil extracellular trap formation by enhancing ubiquitination mediated degradation of peptidylarginine deiminase 4. PMID:34108482
Genome Wide Analysis of Citrus sinensis Heat Shock Proteins. PMID:34056019
The metabolic profile of Bifidobacterium dentium reflects its status as a human gut commensal. PMID:34030655
AUTS2 Regulates RNA Metabolism and Dentate Gyrus Development in Mice. PMID:34013328
Genome-wide identification of ABCC gene family and their expression analysis in pigment deposition of fiber in brown cotton (Gossypium hirsutum). PMID:33961624
Accurate Annotation of Microbial Metagenomic Genes and Identification of Core Sets. PMID:33961221
Molecular evidence of the avocado defense response to Fusarium kuroshium infection: a deep transcriptome analysis using RNA-Seq. PMID:33954045
Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response. PMID:33952202
Genome-wide analyses of the relict gull (Larus relictus): insights and evolutionary implications. PMID:33926388
Isolation, Identification, and Genomic Analysis of a Novel Reovirus from Healthy Grass Carp and Its Dynamic Proliferation In Vitro and In Vivo. PMID:33923543
Genome-Wide Identification and Expansion Patterns of SULTR Gene Family in Gramineae Crops and Their Expression Profiles under Abiotic Stress in Oryza sativa. PMID:33922737
A First Insight into the Gonad Transcriptome of Hong Kong Catfish (Clarias fuscus). PMID:33920938
Physiologists turned Geneticists: Identifying transcripts and genes for neuronal function in the Marbled Crayfish, Procambarus virginalis. PMID:33880091
New Insights Into Biomphalysin Gene Family Diversification in the Vector Snail Biomphalaria glabrata. PMID:33868258
Silencing GhFAR3.1 reduces wax accumulation in cotton leaves and leads to increased susceptibility to drought stress. PMID:33855256
Genome-wide identification and expression pattern of SnRK gene family under several hormone treatments and its role in floral scent emission in Hedychium coronarium. PMID:33854831
The draft genome of the specialist flea beetle Altica viridicyanea (Coleoptera: Chrysomelidae). PMID:33827435
The Craterostigma plantagineum protein kinase CpWAK1 interacts with pectin and integrates different environmental signals in the cell wall. PMID:33821335
In Silico Analysis of Huntingtin Homologs in Lower Eukaryotes. PMID:33809947
Characterization of a New Biofunctional, Exolytic Alginate Lyase from Tamlana sp. s12 with High Catalytic Activity and Cold-Adapted Features. PMID:33800691
The role of GDP-l-galactose phosphorylase in the control of ascorbate biosynthesis. PMID:33793952
TcpC inhibits toll-like receptor signaling pathway by serving as an E3 ubiquitin ligase that promotes degradation of myeloid differentiation factor 88. PMID:33788895
Two-step functional screen on multiple proteinaceous substrates reveals temperature-robust proteases with a broad-substrate range. PMID:33770243
SVEP1 is a human coronary artery disease locus that promotes atherosclerosis. PMID:33762433
Wheat Pm4 resistance to powdery mildew is controlled by alternative splice variants encoding chimeric proteins. PMID:33707738
Peptides Derived From the α-Core and γ-Core Regions of a Putative Silybum marianum Flower Defensin Show Antifungal Activity Against Fusarium graminearum. PMID:33679660
Study on cocoonase, sericin, and degumming of silk cocoon: computational and experimental. PMID:33594479
Comparative transcriptome analysis of Rheum australe, an endangered medicinal herb, growing in its natural habitat and those grown in controlled growth chambers. PMID:33580100
Comparative genomics of a novel clade shed light on the evolution of the genus Erysipelothrix and characterise an emerging species. PMID:33564084
Metagenomic Insights Into the Microbial Assemblage Capable of Quorum Sensing and Quorum Quenching in Particulate Organic Matter in the Yellow Sea. PMID:33519743
Combined genomic, transcriptomic, and metabolomic analyses provide insights into chayote (Sechium edule) evolution and fruit development. PMID:33517348
An arsRB resistance operon confers tolerance to arsenite in the environmental isolate Terribacillus sp. AE2B 122. PMID:33512483
Complete Genome Sequencing of Acinetobacter baumannii AC1633 and Acinetobacter nosocomialis AC1530 Unveils a Large Multidrug-Resistant Plasmid Encoding the NDM-1 and OXA-58 Carbapenemases. PMID:33504662
Bridging Themes: Short Protein Segments Found in Different Architectures. PMID:33502503
Identification and Downstream Analyses of Domains Amplified in Plant Genomes: The Case of StAR-Related Lipid Transfer (START) Domains in Rice. PMID:33471342
Structural-Genetic Characterization Of Novel Butaryl co-A Dehydrogenase and Proposition of Butanol Biosynthesis Pathway in Pusillimonas ginsengisoli SBSA. PMID:33462639
Quorum Sensing Signaling Molecules Positively Regulate c-di-GMP Effector PelD Encoding Gene and PEL Exopolysaccharide Biosynthesis in Extremophile Bacterium Acidithiobacillus thiooxidans. PMID:33430222
A Pseudoalteromonas Clade with Remarkable Biosynthetic Potential. PMID:33397702
Genomics- and Metabolomics-Based Investigation of the Deep-Sea Sediment-Derived Yeast, Rhodotorula mucilaginosa 50-3-19/20B. PMID:33396687
Classification and Computational Analysis of Arabidopsis thaliana Sperm Cell-Specific F-Box Protein Gene 3p.AtFBP113. PMID:33381153
Chromosomal-Level Genome Assembly of Silver Sillago (Sillago sihama). PMID:33367716
Genome sequencing and phylogenetic analysis of allotetraploid Salix matsudana Koidz. PMID:33328474
The genome and transcriptome analysis of snake gourd provide insights into its evolution and fruit development and ripening. PMID:33328440
Acinetobacter Plasmids: Diversity and Development of Classification Strategies. PMID:33304332
Diversity and Distribution of a Novel Genus of Hyperthermophilic Aquificae Viruses Encoding a Proof-Reading Family-A DNA Polymerase. PMID:33281778
Genome-wide identification, phylogenetic and expression pattern analysis of GATA family genes in Brassica napus. PMID:33276730
Type I toxin-antitoxin systems contribute to the maintenance of mobile genetic elements in Clostridioides difficile. PMID:33247281
Bacteriophages vB_Sen-TO17 and vB_Sen-E22, Newly Isolated Viruses from Chicken Feces, Specific for Several Salmonella enterica Strains. PMID:33233449
Casboundary: automated definition of integral Cas cassettes. PMID:33226067
Identification of Anthocyanins-Related Glutathione S-Transferase (GST) Genes in the Genome of Cultivated Strawberry (Fragaria × ananassa). PMID:33218073
A comprehensive analysis of cotton VQ gene superfamily reveals their potential and extensive roles in regulating cotton abiotic stress. PMID:33198654
In and Outs of Chuviridae Endogenous Viral Elements: Origin of a Potentially New Retrovirus and Signature of Ancient and Ongoing Arms Race in Mosquito Genomes. PMID:33193616
Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel. PMID:33168033
Plasmodium DEH is ER-localized and crucial for oocyst mitotic division during malaria transmission. PMID:33106323
Genome-Wide Characterization and Expression of Two-Component System Genes in Cytokinin-Regulated Gall Formation in Zizania latifolia. PMID:33105697
A small secreted protein from Zymoseptoria tritici interacts with a wheat E3 ubiquitin ligase to promote disease. PMID:33095257
The genome of Chinese flowering cherry (Cerasus serrulata) provides new insights into Cerasus species. PMID:33082971
Deciphering the molecular mechanisms of mother-to-egg immune protection in the mealworm beetle Tenebrio molitor. PMID:33057453
Genome-Wide Identification, Classification, Characterization, and Expression Analysis of the Wall-Associated Kinase Family during Fruit Development and under Wound Stress in Tomato (Solanum lycopersicum L.). PMID:33053790
Functional characterization of the AGL1 aegerolysin in the mycoparasitic fungus Trichoderma atroviride reveals a role in conidiation and antagonism. PMID:33052533
Biophysical and In-Silico Studies of Phytochemicals Targeting Chorismate Synthase from Drug-Resistant Moraxella Catarrhalis. PMID:33037984
Mechanism and evolution of the Zn-fingernail required for interaction of VARP with VPS29. PMID:33024112
High quality genome of Erigeron breviscapus provides a reference for herbal plants in Asteraceae. PMID:32985109
Identification, Characterization, and Genomic Analysis of Novel Serratia Temperate Phages from a Gold Mine. PMID:32933193
The Salt Sensitivity Induced by Disruption of Cell Wall-Associated Kinase 1 (SlWAK1) Tomato Gene Is Linked to Altered Osmotic and Metabolic Homeostasis. PMID:32878190
Nostoc edaphicum CCNP1411 from the Baltic Sea-A New Producer of Nostocyclopeptides. PMID:32858999
Characteristics of a Series of Three Bacteriophages Infecting Salmonella enterica Strains. PMID:32858954
2,4-Di-Tert-Butylphenol Isolated From an Endophytic Fungus, Daldinia eschscholtzii, Reduces Virulence and Quorum Sensing in Pseudomonas aeruginosa. PMID:32849344
QTL Mapping and Marker Development for Tolerance to Sulfur Phytotoxicity in Melon (Cucumis melo). PMID:32793259
Genomic Characteristics and Potential Metabolic Adaptations of Hadal Trench Roseobacter and Alteromonas Bacteria Based on Single-Cell Genomics Analyses. PMID:32793171
Pseudohyphal differentiation in Komagataella phaffii: investigating the FLO gene family. PMID:32766781
Defects in the Ferroxidase That Participates in the Reductive Iron Assimilation System Results in Hypervirulence in Botrytis Cinerea. PMID:32753496
Transcriptome wide identification and characterization of regulatory genes involved in EAA metabolism and validation through expression analysis in different developmental stages of finger millet spikes. PMID:32728514
A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes. PMID:32723799
The wheat pathogen Zymoseptoria tritici senses and responds to different wavelengths of light. PMID:32711450
The Bartonella autotransporter BafA activates the host VEGF pathway to drive angiogenesis. PMID:32678094
Characterization of Novel Broad-Host-Range Bacteriophage DLP3 Specific to Stenotrophomonas maltophilia as a Potential Therapeutic Agent. PMID:32670234
Gene Expression and Functional Analyses of Odorant Receptors in Small Hive Beetles (Aethina tumida). PMID:32605135
Detecting and correcting misclassified sequences in the large-scale public databases. PMID:32579213
Novel keratinolytic enzymes, discovered from a talented and efficient bacterial keratin degrader. PMID:32572051
Genome-wide identification and characterization of SnRK family genes in Brassica napus. PMID:32571241
Identification of a Neutralizing Monoclonal Antibody That Recognizes a Unique Epitope on Domain III of the Envelope Protein of Tembusu Virus. PMID:32549221
Risk1, a Phosphatidylinositol 3-Kinase Effector, Promotes Rickettsia typhi Intracellular Survival. PMID:32546622
Additional ORFs in Plant LTR-Retrotransposons. PMID:32528484
A unique combination of glycoside hydrolases in Streptococcus suis specifically and sequentially acts on host-derived αGal-epitope glycans. PMID:32518157
The Concerted Action of Two B3-Like Prophage Genes Excludes Superinfecting Bacteriophages by Blocking DNA Entry into Pseudomonas aeruginosa. PMID:32461312
In silico Analyses of Core Proteins and Putative Effector and Immunity Proteins for T6SS in Enterohemorrhagic E. coli. PMID:32432054
Characterization of an A-Type Muscarinic Acetylcholine Receptor and Its Possible Non-neuronal Role in the Oriental Armyworm, Mythimna separata Walker (Lepidoptera: Noctuidae). PMID:32425811
Genome-wide analysis of the superoxide dismutase (SOD) gene family in Zostera marina and expression profile analysis under temperature stress. PMID:32411532
Complex Analysis of Retroposed Genes' Contribution to Human Genome, Proteome and Transcriptome. PMID:32408516
Automated Cell-Free Multiprotein Synthesis Facilitates the Identification of a Secretory, Oligopeptide Elicitor-Like, Immunoreactive Protein of the Oomycete Pythium insidiosum. PMID:32398276
Study of combining virtual screening and antiviral treatments of the Sars-CoV-2 (Covid-19). PMID:32387389
The chromosome-scale genome reveals the evolution and diversification after the recent tetraploidization event in tea plant. PMID:32377354
LysM Proteins Regulate Fungal Development and Contribute to Hyphal Protection and Biocontrol Traits in Clonostachys rosea. PMID:32373095
Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110. PMID:32346757
A tudor domain protein, SIMR-1, promotes siRNA production at piRNA-targeted mRNAs in C. elegans. PMID:32338603
A Chromosome-Scale Assembly of the Asian Honeybee Apis cerana Genome. PMID:32292419
Identification of immune-related proteins of Dreissena polymorpha hemocytes and plasma involved in host-microbe interactions by differential proteomics. PMID:32277127
Functional study of C-terminal domain of the thermoacidophilic raw starch-hydrolyzing α-amylase Gt-amy. PMID:32257525
The chromosome-scale assembly of the willow genome provides insight into Salicaceae genome evolution. PMID:32257231
Subtilisin-like Pr1 proteases marking the evolution of pathogenicity in a wide-spectrum insect-pathogenic fungus. PMID:32253991
Biological functions of the autophagy-related proteins Atg4 and Atg8 in Cryptococcus neoformans. PMID:32251488
Identification and Characterization of the First Virulent Phages, Including a Novel Jumbo Virus, Infecting Ochrobactrum spp. PMID:32197547
Metagenomic Analysis of Plant Viruses Associated With Papaya Ringspot Disease in Carica papaya L. in Kenya. PMID:32194518
Novel Cell-Virus-Virophage Tripartite Infection Systems Discovered in the Freshwater Lake Dishui Lake in Shanghai, China. PMID:32188734
The NIa-Protease Protein Encoded by the Pepper Mottle Virus Is a Pathogenicity Determinant and Releases DNA Methylation of Nicotiana benthamiana. PMID:32153517
Comparative Genomics of Actinobacillus pleuropneumoniae Serotype 8 Reveals the Importance of Prophages in the Genetic Variability of the Species. PMID:32149072
An assessment of genome annotation coverage across the bacterial tree of life. PMID:32124724
Genome-wide discovery, and computational and transcriptional characterization of an AIG gene family in the freshwater snail Biomphalaria glabrata, a vector for Schistosoma mansoni. PMID:32122294
The ArathEULS3 Lectin Ends up in Stress Granules and Can Follow an Unconventional Route for Secretion. PMID:32121292
Investigation of the quorum-sensing regulon of the biocontrol bacterium Pseudomonas chlororaphis strain PA23. PMID:32109244
DES2 is a fatty acid Δ11 desaturase capable of synthesizing palmitvaccenic acid in the arbuscular mycorrhizal fungus Rhizophagus irregularis. PMID:32060917
Gene Expression Pattern of Vacuolar-Iron Transporter-Like (VTL) Genes in Hexaploid Wheat during Metal Stress. PMID:32053953
Comparative genome characterization of the periodontal pathogen Tannerella forsythia. PMID:32046654
Genomic characterization of Parengyodontium americanum sp. nov. PMID:32028048
Systematic Analysis of the Maize OSCA Genes Revealing ZmOSCA Family Members Involved in Osmotic Stress and ZmOSCA2.4 Confers Enhanced Drought Tolerance in Transgenic Arabidopsis. PMID:31948071
Identification and Characterization of the Chitin Synthase Genes From the Fish Pathogen Saprolegnia parasitica. PMID:31921051
Looking for the X Factor in Bacterial Pathogenesis: Association of orfX-p47 Gene Clusters with Toxin Genes in Clostridial and Non-Clostridial Bacterial Species. PMID:31906154
The Drosophila melanogaster Ortholog of RFWD3 Functions Independently of RAD51 During DNA Repair. PMID:31900333
Genome-wide identification and functional analysis of JmjC domain-containing genes in flower development of Rosa chinensis. PMID:31898146
The persimmon (Diospyros oleifera Cheng) genome provides new insights into the inheritance of astringency and ancestral evolution. PMID:31871686
Rapid classification of group B Streptococcus serotypes based on matrix-assisted laser desorption ionization-time of flight mass spectrometry and machine learning techniques. PMID:31870283
Phylogenetic analysis of ABCG subfamily proteins in plants: functional clustering and coevolution with ABCGs of pathogens. PMID:31828796
Genomic insights into mite phylogeny, fitness, development, and reproduction. PMID:31818245
Viruses Infecting the Plant Pathogenic Fungus Rhizoctonia solani. PMID:31801308
Cloning and characterization of a gene encoding MIZ1, a domain of unknown function protein and its role in salt and drought stress in rice. PMID:31786672
Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110. PMID:31736895
The Novel Serine/Threonine Protein Kinase LmjF.22.0810 from Leishmania major may be Involved in the Resistance to Drugs such as Paromomycin. PMID:31718000
Isolation and Genome Sequencing of a Novel Pseudomonas aeruginosa Phage PA-YS35. PMID:31664502
Integration of Quantitative Trait Loci Mapping and Expression Profiling Analysis to Identify Genes Potentially Involved in Ramie Fiber Lignin Biosynthesis. PMID:31653111
Metallochaperones Are Needed for Mycobacterium tuberculosis and Escherichia coli Nicotinamidase-Pyrazinamidase Activity. PMID:31636108
The pomegranate (Punica granatum L.) draft genome dissects genetic divergence between soft- and hard-seeded cultivars. PMID:31549477
Overexpression of BpCUC2 Influences Leaf Shape and Internode Development in Betula pendula. PMID:31548512
Overlapping transcriptional expression response of wheat zinc-induced facilitator-like transporters emphasize important role during Fe and Zn stress. PMID:31547799
Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence. PMID:31529539
The RpoS Gatekeeper in Borrelia burgdorferi: An Invariant Regulatory Scheme That Promotes Spirochete Persistence in Reservoir Hosts and Niche Diversity. PMID:31507550
Interspecies comparison of sea star adhesive proteins. PMID:31495313
Bioinformatic and Molecular Analysis of Inverse Autotransporters from Escherichia coli. PMID:31462414
A Quorum-Sensing Inhibitor Strain of Vibrio alginolyticus Blocks Qs-Controlled Phenotypes in Chromobacterium violaceum and Pseudomonas aeruginosa. PMID:31450549
A chromosome-level draft genome of the grain aphid Sitobion miscanthi. PMID:31430367
Identification of Maize CC-Type Glutaredoxins That Are Associated with Response to Drought Stress. PMID:31409044
Comparative Genomics of Marine Sponge-Derived Streptomyces spp. Isolates SM17 and SM18 With Their Closest Terrestrial Relatives Provides Novel Insights Into Environmental Niche Adaptations and Secondary Metabolite Biosynthesis Potential. PMID:31404169
Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes. PMID:31402174
Information theoretic measures for quantifying sequence-ensemble relationships of intrinsically disordered proteins. PMID:31375817
Functional Analysis of Polyprenyl Diphosphate Synthase Genes Involved in Plastoquinone and Ubiquinone Biosynthesis in Salvia miltiorrhiza. PMID:31354766
A polyketide synthase gene cluster associated with the sexual reproductive cycle of the banana pathogen, Pseudocercospora fijiensis. PMID:31344104
Genome-Wide Identification and Expression Analysis of the Metacaspase Gene Family in Gossypium Species. PMID:31336941
Complete genome sequence of the Sulfodiicoccus acidiphilus strain HS-1T, the first crenarchaeon that lacks polB3, isolated from an acidic hot spring in Ohwaku-dani, Hakone, Japan. PMID:31331368
Characterization and Expression Analysis of Heme Oxygenase Genes from Sorghum bicolor. PMID:31320797
A maize polygalacturonase functions as a suppressor of programmed cell death in plants. PMID:31307401
Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C. PMID:31289832
Characterization of an acetyl xylan esterase from the marine bacterium Ochrovirga pacifica and its synergism with xylanase on beechwood xylan. PMID:31286972
Pseudomolecule-level assembly of the Chinese oil tree yellowhorn (Xanthoceras sorbifolium) genome. PMID:31241154
The endonuclease Cue2 cleaves mRNAs at stalled ribosomes during No Go Decay. PMID:31219035
Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation. PMID:31214244
Three new serine-protease autotransporters of Enterobacteriaceae (SPATEs) from extra-intestinal pathogenic Escherichia coli and combined role of SPATEs for cytotoxicity and colonization of the mouse kidney. PMID:31198092
Comprehensive Analysis of SnRK Gene Family and their Responses to Salt Stress in Eucalyptus grandis. PMID:31174407
Integrated transcriptomic and secretomic approaches reveal critical pathogenicity factors in Pseudofabraea citricarpa inciting citrus target spot. PMID:31162831
Individual Physiological Adaptations Enable Selected Bacterial Taxa To Prevail during Long-Term Incubations. PMID:31152013
Characterization of the virome of Paracoccus spp. (Alphaproteobacteria) by combined in silico and in vivo approaches. PMID:31133656
Expansion and Functional Divergence of Inositol Polyphosphate 5-Phosphatases in Angiosperms. PMID:31121965
First Report of Integrative Conjugative Elements in Riemerella anatipestifer Isolates From Ducks in China. PMID:31069241
Distribution and Evolution of Nonribosomal Peptide Synthetase Gene Clusters in the Ceratocystidaceae. PMID:31052158
BjuWRR1, a CC-NB-LRR gene identified in Brassica juncea, confers resistance to white rust caused by Albugo candida. PMID:31049632
MyDGR: a server for identification and characterization of diversity-generating retroelements. PMID:31049585
The trihelix family of transcription factors: functional and evolutionary analysis in Moso bamboo (Phyllostachys edulis). PMID:31023225
Tracing the origin and evolution of pseudokinases across the tree of life. PMID:31015289
Characterization and genome analysis of a novel bacteriophage vB_SpuP_Spp16 that infects Salmonella enterica serovar pullorum. PMID:31004278
Genome-wide analysis of maize OSCA family members and their involvement in drought stress. PMID:30997296
Novel Stenotrophomonas maltophilia temperate phage DLP4 is capable of lysogenic conversion. PMID:30991961
Adaptive dif Modules in Permafrost Strains of Acinetobacter lwoffii and Their Distribution and Abundance Among Present Day Acinetobacter Strains. PMID:30984151
Evolution of folate biosynthesis and metabolism across algae and land plant lineages. PMID:30952916
Genomic Analysis of Pseudomonas sp. Strain SCT, an Iodate-Reducing Bacterium Isolated from Marine Sediment, Reveals a Possible Use for Bioremediation. PMID:30910818
Homology modeling and docking analysis of ßC1 protein encoded by Cotton leaf curl Multan betasatellite with different plant flavonoids. PMID:30899831
Computational Molecular Phenotypic Analysis of PTPN22 (W620R), IL6R (D358A), and TYK2 (P1104A) Gene Mutations of Rheumatoid Arthritis. PMID:30899276
Genome-wide identification and characterization of abiotic-stress responsive SOD (superoxide dismutase) gene family in Brassica juncea and B. rapa. PMID:30890148
Characterization of a novel cathepsin L-like protease from Taenia solium metacestodes for the immunodiagnosis of porcine cysticercosis. PMID:30878092
Genome-wide Analysis of bZIP Transcription Factors in wheat and Functional Characterization of a TabZIP under Abiotic Stress. PMID:30872683
Functional characterization of HSFs from wheat in response to heat and other abiotic stress conditions. PMID:30868385
Molecular Interaction-Based Exploration of the Broad Spectrum Efficacy of a Bacillus thuringiensis Insecticidal Chimeric Protein, Cry1AcF. PMID:30832332
RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena. PMID:30808657
Deciphering structure, function and mechanism of Plasmodium IspD homologs from their evolutionary imprints. PMID:30783866
Fibroblast growth factor receptor influences primary cilium length through an interaction with intestinal cell kinase. PMID:30782830
Stenotrophomonas maltophilia AHL-Degrading Strains Isolated from Marine Invertebrate Microbiota Attenuate the Virulence of Pectobacterium carotovorum and Vibrio coralliilyticus. PMID:30762152
Heterochromatin evolution in Arachis investigated through genome-wide analysis of repetitive DNA. PMID:30680457
Complementary Proteomics, Genomics approaches identifies potential pathogenicity/virulence factors in Tilletia indica induced under the influence of host factor. PMID:30679765
Investigations into PoyH, a promiscuous protease from polytheonamide biosynthesis. PMID:30627933
Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification. PMID:30622655
Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton. PMID:30619142
Genome-wide identification and comparative analysis of alternative splicing across four legume species. PMID:30603789
Identification of Viral Taxon-Specific Genes (VTSG): Application to Caliciviridae. PMID:30602084
Genome-Wide Identification and Comparative Analysis for OPT Family Genes in Panax ginseng and Eleven Flowering Plants. PMID:30577553
Transcriptome analysis of the anhydrobiotic cell line Pv11 infers the mechanism of desiccation tolerance and recovery. PMID:30560869
Prediction of pathogenesis-related secreted proteins from Stemphylium lycopersici. PMID:30458731
Evolution and multiple origins of zona pellucida genes in vertebrates. PMID:30425109
The extracellular loop of Man-PTS subunit IID is responsible for the sensitivity of Lactococcus garvieae to garvicins A, B and C. PMID:30361679
A most wanted list of conserved microbial protein families with no known domains. PMID:30332487
Quorum Sensing Modulates the Epibiotic-Parasitic Relationship Between Actinomyces odontolyticus and Its Saccharibacteria epibiont, a Nanosynbacter lyticus Strain, TM7x. PMID:30319555
Complete Genome Sequence of a Novel RNA Virus Identified from a Deep-Sea Animal, Osedax japonicus. PMID:30318497
Functional analysis of polyketide synthase genes in the biocontrol fungus Clonostachys rosea. PMID:30301915
Ceramide Synthase 6: Comparative Analysis, Phylogeny and Evolution. PMID:30297675
Identity and validity of conserved B cell epitopes of filovirus glycoprotein: towards rapid diagnostic testing for Ebola and possibly Marburg virus disease. PMID:30285648
New insights into Phakopsora pachyrhizi infection based on transcriptome analysis in planta. PMID:30235396
Comparative genomics of molybdenum utilization in prokaryotes and eukaryotes. PMID:30231876
Cross-exchange of B-vitamins underpins a mutualistic interaction between Ostreococcus tauri and Dinoroseobacter shibae. PMID:30228381
Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci. PMID:30227868
Genome Sequencing Reveals a Large and Diverse Repertoire of Antimicrobial Peptides. PMID:30210481
Nature-inspired engineering of an F-type lectin for increased binding strength. PMID:30202877
A database of metazoan cytochrome c oxidase subunit I gene sequences derived from GenBank with CO-ARBitrator. PMID:30084847
A WUSCHEL Homeobox Transcription Factor, OsWOX13, Enhances Drought Tolerance and Triggers Early Flowering in Rice. PMID:30078233
A novel Fas-binding outer membrane protein and lipopolysaccharide of Leptospira interrogans induce macrophage apoptosis through the Fas/FasL-caspase-8/-3 pathway. PMID:30061622
A Tangled Web: Origins of Reproductive Parasitism. PMID:30060072
Searching ECOD for Homologous Domains by Sequence and Structure. PMID:30040199
Genome Sequencing and analyses of Two Marine Fungi from the North Sea Unraveled a Plethora of Novel Biosynthetic Gene Clusters. PMID:29976990
Histone Methylation by SETD1A Protects Nascent DNA through the Nucleosome Chaperone Activity of FANCD2. PMID:29937342
Mammalian Glutamyl Aminopeptidase Genes (ENPEP) and Proteins: Comparative Studies of a Major Contributor to Arterial Hypertension. PMID:29900035
Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships. PMID:29881631
Fermentative Spirochaetes mediate necromass recycling in anoxic hydrocarbon-contaminated habitats. PMID:29849169
Salmonella enterica serovar Typhimurium has three transketolase enzymes contributing to the pentose phosphate pathway. PMID:29848552
Genomic and ecological study of two distinctive freshwater bacteriophages infecting a Comamonadaceae bacterium. PMID:29789681
BLAST-XYPlot Viewer: A Tool for Performing BLAST in Whole-Genome Sequenced Bacteria/Archaea and Visualize Whole Results Simultaneously. PMID:29789313
Integrated proteomics, genomics, metabolomics approaches reveal oxalic acid as pathogenicity factor in Tilletia indica inciting Karnal bunt disease of wheat. PMID:29777151
Hookworm Secreted Extracellular Vesicles Interact With Host Cells and Prevent Inducible Colitis in Mice. PMID:29760697
Two New Lytic Bacteriophages of the Myoviridae Family Against Carbapenem-Resistant Acinetobacter baumannii. PMID:29760690
Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations. PMID:29740420
Plastid genome analysis of three Nemaliophycidae red algal species suggests environmental adaptation for iron limited habitats. PMID:29738547
Periplasmic depolymerase provides insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides. PMID:29735649
Male-killing toxin in a bacterial symbiont of Drosophila. PMID:29720654
Comparative genomics of cocci-shaped Sporosarcina strains with diverse spatial isolation. PMID:29716534
Identification of RNA-binding proteins in exosomes capable of interacting with different types of RNA: RBP-facilitated transport of RNAs into exosomes. PMID:29689087
Phylogenomic Analysis of β-Lactamase in Archaea and Bacteria Enables the Identification of Putative New Members. PMID:29672703
Candidate genes of flavonoid biosynthesis in Selaginella bryopteris (L.) Baker identified by RNA-Seq. PMID:29666977
Duplication and diversification of lectin receptor-like kinases (LecRLK) genes in soybean. PMID:29651041
Catabolism of 2-Hydroxypyridine by Burkholderia sp. Strain MAK1: a 2-Hydroxypyridine 5-Monooxygenase Encoded by hpdABCDE Catalyzes the First Step of Biodegradation. PMID:29602788
Engineering of Phage-Derived Lytic Enzymes: Improving Their Potential as Antimicrobials. PMID:29565804
Genome-Wide Identification and Characterization of Tyrosine Kinases in the Silkworm, Bombyx mori. PMID:29561793
Genomic and physiological analyses of an indigenous strain, Enterococcus faecium 17OM39. PMID:29556852
Genomic Insights into Evolution of AdpA Family Master Regulators of Morphological Differentiation and Secondary Metabolism in Streptomyces. PMID:29536136
Loss and gain of N-linked glycosylation sequons due to single-nucleotide variation in cancer. PMID:29531238
A Decade of Streptococcus thermophilus Phage Evolution in an Irish Dairy Plant. PMID:29523549
In silico comparative analysis of GGDEF and EAL domain signaling proteins from the Azospirillum genomes. PMID:29523074
Probing the Phylogenomics and Putative Pathogenicity Genes of Pythium insidiosum by Oomycete Genome Analyses. PMID:29515152
Complete Genome Sequence of Temperate Stenotrophomonas maltophilia Bacteriophage DLP5. PMID:29496826
Structure, computational and biochemical analysis of PcCel45A endoglucanase from Phanerochaete chrysosporium and catalytic mechanisms of GH45 subfamily C members. PMID:29487297
Complete genome sequence of Lactobacillus rhamnosus Pen, a probiotic component of a medicine used in prevention of antibiotic-associated diarrhoea in children. PMID:29483943
Genome-Wide Identification and Characterization of WD40 Protein Genes in the Silkworm, Bombyx mori. PMID:29425159
Genome-Wide Analysis of Type VI System Clusters and Effectors in Burkholderia Species. PMID:29422784
Characterization of Trichuris muris secreted proteins and extracellular vesicles provides new insights into host-parasite communication. PMID:29410780
The Global Acetylome of the Human Pathogen Vibrio cholerae V52 Reveals Lysine Acetylation of Major Transcriptional Regulators. PMID:29376036
Systematic discovery of antiphage defense systems in the microbial pangenome. PMID:29371424
Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC). PMID:29343217
The genome sequence of the commercially cultivated mushroom Agrocybe aegerita reveals a conserved repertoire of fruiting-related genes and a versatile suite of biopolymer-degrading enzymes. PMID:29334897
Analysis of viral diversity for vaccine target discovery. PMID:29322922
Dystrophin gene expression and intracellular calcium changes in the giant freshwater prawn, Macrobrachium rosenbergii, in response to white spot symptom disease infection. PMID:29322096
Inhibitor repurposing reveals ALK, LTK, FGFR, RET and TRK kinases as the targets of AZD1480. PMID:29312610
The genome sequence of Escherichia coli tailed phage D6 and the diversity of Enterobacteriales circular plasmid prophages. PMID:29304472
Genome of Russian wheat aphid an economically important cereal aphid. PMID:29299110
Genome sequence of the model plant pathogen Pectobacterium carotovorum SCC1. PMID:29276572
Dicer uses distinct modules for recognizing dsRNA termini. PMID:29269422
Peptide Uptake Is Essential for Borrelia burgdorferi Viability and Involves Structural and Regulatory Complexity of its Oligopeptide Transporter. PMID:29259089
KiPho: malaria parasite kinome and phosphatome portal. PMID:29220464
Evolution of intron-poor clades and expression patterns of the glycosyltransferase family 47. PMID:29196940
The Brassicaceae Family Displays Divergent, Shoot-Skewed NLR Resistance Gene Expression. PMID:29187571
A leptospiral AAA+ chaperone-Ntn peptidase complex, HslUV, contributes to the intracellular survival of Leptospira interrogans in hosts and the transmission of leptospirosis. PMID:29184154
Cgl2 plays an essential role in cuticular wax biosynthesis in cabbage (Brassica oleracea L. var. capitata). PMID:29179675
New eight genes identified at the clinical multidrug-resistant Acinetobacter baumannii DMS06669 strain in a Vietnam hospital. PMID:29137647
Biophysical and enzymatic properties of aminoglycoside adenylyltransferase AadA6 from Pseudomonas aeruginosa. PMID:29124199
Simultaneous genome-wide gene expression and transcript isoform profiling in the human malaria parasite. PMID:29112986
Genome-wide identification and expression analysis of glutathione S-transferase gene family in tomato: Gaining an insight to their physiological and stress-specific roles. PMID:29095889
Rapid turnover of effectors in grass powdery mildew (Blumeria graminis). PMID:29089018
Variant Amino Acid Residues Alter the Enzyme Activity of Peanut Type 2 Diacylglycerol Acyltransferases. PMID:29085382
Molecular Cloning of the Vitellogenin Gene and the Effects of Vitellogenin Protein Expression on the Physiology of Harmonia axyridis (Coleoptera: Coccinellidae). PMID:29066802
Specific Pathogen Recognition by Multiple Innate Immune Sensors in an Invertebrate. PMID:29051762
QTL analysis of four main stem bark traits using a GBS-SNP-based high-density genetic map in ramie. PMID:29044147
Membrane Trafficking Modulation during Entamoeba Encystation. PMID:28993644
The evolutionary history of Saccharomyces species inferred from completed mitochondrial genomes and revision in the 'yeast mitochondrial genetic code'. PMID:28992063
Quantitative proteomics reveals that long non-coding RNA MALAT1 interacts with DBC1 to regulate p53 acetylation. PMID:28973437
Experimental and Theoretical Approaches To Investigate the Immunogenicity of Taenia solium-Derived KE7 Antigen. PMID:28923896
Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis. PMID:28892507
Novel Organelles with Elements of Bacterial and Eukaryotic Secretion Systems Weaponize Parasites of Drosophila. PMID:28889977
Systems Identification and Characterization of Cell Wall Reassembly and Degradation Related Genes in Glycine max (L.) Merill, a Bioenergy Legume. PMID:28883533
Evolution of Vertebrate Solute Carrier Family 9B Genes and Proteins (SLC9B): Evidence for a Marsupial Origin for Testis Specific SLC9B1 from an Ancestral Vertebrate SLC9B2 Gene. PMID:28868326
Sero-diagnosis of Active Mycobacterium tuberculosis Disease among HIV Co-infected Persons using Thymidylate Kinase based Antigen and Antibody Capture Enzyme Immuno-Assays. PMID:28856068
Auxin Response Factor Genes Repertoire in Mulberry: Identification, and Structural, Functional and Evolutionary Analyses. PMID:28841197
A large scale Plasmodium vivax- Saimiri boliviensis trophozoite-schizont transition proteome. PMID:28829774
Argonaute 8 (AGO8) Mediates the Elicitation of Direct Defenses against Herbivory. PMID:28811334
Genome-wide analysis of transcription factors during somatic embryogenesis in banana (Musa spp.) cv. Grand Naine. PMID:28797040
Immuno-diagnosis of Mycobacterium tuberculosis in sputum, and reduction of timelines for its positive cultures to within 3 h by pathogen-specific thymidylate kinase expression assays. PMID:28789704
Comprehensive in silico allergenicity assessment of novel protein engineered chimeric Cry proteins for safe deployment in crops. PMID:28768539
ProtozoaDB 2.0: A Trypanosoma Brucei Case Study. PMID:28726736
Overexpression and purification of Dicer and accessory proteins for biochemical and structural studies. PMID:28723582
Three members of Medicago truncatula ST family are ubiquitous during development and modulated by nutritional status (MtST1) and dehydration (MtST2 and MtST3). PMID:28693485
Origin and evolution of group XI secretory phospholipase A2 from flax (Linum usitatissimum) based on phylogenetic analysis of conserved domains. PMID:28669075
An RNA Recognition Motif-Containing Protein Functions in Meiotic Silencing by Unpaired DNA. PMID:28667016
Genomic introgression mapping of field-derived multiple-anthelmintic resistance in Teladorsagia circumcincta. PMID:28644839
Allele specific CAPS marker development and characterization of chalcone synthase gene in Indian mulberry (Morus spp., family Moraceae). PMID:28640826
The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses. PMID:28634470
The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa. PMID:28616073
Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach. PMID:28611792
Genome-wide survey of switchgrass NACs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific NACs. PMID:28596552
The pepper virome: natural co-infection of diverse viruses and their quasispecies. PMID:28595635
Genome-Wide Transcriptome Analysis Reveals Extensive Alternative Splicing Events in the Protoscoleces of Echinococcus granulosus and Echinococcus multilocularis. PMID:28588571
Genetic Analysis of NBS-LRR Gene Family in Chickpea and Their Expression Profiles in Response to Ascochyta Blight Infection. PMID:28580004
Promiscuous signaling by a regulatory system unique to the pandemic PMEN1 pneumococcal lineage. PMID:28542565
Identification and expression analysis of starch branching enzymes involved in starch synthesis during the development of chestnut (Castanea mollissima Blume) cotyledons. PMID:28542293
Evolutionary journey of the Gc protein (vitamin D-binding protein) across vertebrates. PMID:28516027
13 novel putative mutations in ATP7A found in a cohort of 25 Italian families. PMID:28451781
Cloning retinoid and peroxisome proliferator-activated nuclear receptors of the Pacific oyster and in silico binding to environmental chemicals. PMID:28426724
Regulation of Banana Phytoene Synthase (MaPSY) Expression, Characterization and Their Modulation under Various Abiotic Stress Conditions. PMID:28421096
Genome-wide analysis of VQ motif-containing proteins in Moso bamboo (Phyllostachys edulis). PMID:28417193
Identification and screening of effective protective antigens for channel catfish against Streptococcus iniae. PMID:28415641
Comparative studies of vertebrate iduronate 2-sulfatase (IDS) genes and proteins: evolution of A mammalian X-linked gene. PMID:28401457
Expression of four phosphate transporter genes from Finger millet (Eleusine coracana L.) in response to mycorrhizal colonization and Pi stress. PMID:28391483
A Locus Encoding Variable Defense Systems against Invading DNA Identified in Streptococcus suis. PMID:28379509
Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota). PMID:28348446
Structural insights into ligand binding of PGRP1 splice variants in Chinese giant salamander (Andrias davidianus) from molecular dynamics and free energy calculations. PMID:28341996
Structure-based functional annotation of hypothetical proteins from Candida dubliniensis: a quest for potential drug targets. PMID:28324558
Characterization of the polyphenol oxidase gene family reveals a novel microRNA involved in posttranscriptional regulation of PPOs in Salvia miltiorrhiza. PMID:28304398
Phage Biodiversity in Artisanal Cheese Wheys Reflects the Complexity of the Fermentation Process. PMID:28300778
The receptor-like pseudokinase MRH1 interacts with the voltage-gated potassium channel AKT2. PMID:28300158
The isolation and characterization of Stenotrophomonas maltophilia T4-like bacteriophage DLP6. PMID:28291834
Characterisation and genome sequence of the lytic Acinetobacter baumannii bacteriophage vB_AbaS_Loki. PMID:28207864
Novel Three-Component Phenazine-1-Carboxylic Acid 1,2-Dioxygenase in Sphingomonas wittichii DP58. PMID:28188209
Genetic and functional characterisation of the lactococcal P335 phage-host interactions. PMID:28183268
Distribution bias analysis of germline and somatic single-nucleotide variations that impact protein functional site and neighboring amino acids. PMID:28176830
Complete genome sequence of Thermus brockianus GE-1 reveals key enzymes of xylan/xylose metabolism. PMID:28174620
Evolution of the merozoite surface protein 7 (msp7) family in Plasmodium vivax and P. falciparum: A comparative approach. PMID:28163236
Evolutionary Covariance Combined with Molecular Dynamics Predicts a Framework for Allostery in the MutS DNA Mismatch Repair Protein. PMID:28135092
Exploring the dark foldable proteome by considering hydrophobic amino acids topology. PMID:28134276
Genome-Wide Transcriptional Profiling to Elucidate Key Candidates Involved in Bud Burst and Rattling Growth in a Subtropical Bamboo (Dendrocalamus hamiltonii). PMID:28123391
Safety assessment of Staphylococcus phages of the family Myoviridae based on complete genome sequences. PMID:28117392
Characterization and in vivo regulon determination of an ECF sigma factor and its cognate anti-sigma factor in Nostoc punctiforme. PMID:28105698
The PPE2 protein of Mycobacterium tuberculosis translocates to host nucleus and inhibits nitric oxide production. PMID:28071726
Duplication and Divergence of Leucine-Rich Repeat Receptor-Like Protein Kinase (LRR-RLK) Genes in Basal Angiosperm Amborella trichopoda. PMID:28066499
Insertion Polymorphisms of Mobile Genetic Elements in Sexual and Asexual Populations of Daphnia pulex. PMID:28057730
Insights into the lifestyle of uncultured bacterial natural product factories associated with marine sponges. PMID:28049838
Screening for angiogenic inhibitors in zebrafish to evaluate a predictive model for developmental vascular toxicity. PMID:28007540
The Effect of West Nile Virus Infection on the Midgut Gene Expression of Culex pipiens quinquefasciatus Say (Diptera: Culicidae). PMID:27999244
Convergent patterns in the evolution of mealybug symbioses involving different intrabacterial symbionts. PMID:27983719
Non-canonical integration events in Pichia pastoris encountered during standard transformation analysed with genome sequencing. PMID:27958335
Genetic Characterization of the Galactitol Utilization Pathway of Salmonella enterica Serovar Typhimurium. PMID:27956522
Divergent Expression Patterns in Two Vernicia Species Revealed the Potential Role of the Hub Gene VmAP2/ERF036 in Resistance to Fusarium oxysporum in Vernicia montana. PMID:27916924
Visualizing Evolutionary Relationships of Multidomain Proteins: An Example from Receiver (REC) Domains of Sensor Histidine Kinases in the Candidatus Maribeggiatoa str. Orange Guaymas Draft Genome. PMID:27895624
Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome. PMID:27892853
Genome mining unveils widespread natural product biosynthetic capacity in human oral microbe Streptococcus mutans. PMID:27869143
Diversity, evolution and expression profiles of histone acetyltransferases and deacetylases in oomycetes. PMID:27852223
De novo assembly and analysis of changes in the protein-coding transcriptome of the freshwater shrimp Paratya australiensis (Decapoda: Atyidae) in response to acid sulfate drainage water. PMID:27821072
Recent and dynamic transposable elements contribute to genomic divergence under asexuality. PMID:27821059
Genome Dynamics and Molecular Infection Epidemiology of Multidrug-Resistant Helicobacter pullorum Isolates Obtained from Broiler and Free-Range Chickens in India. PMID:27815276
Characterization of the starch-acting MaAmyB enzyme from Microbacterium aurum B8.A representing the novel subfamily GH13_42 with an unusual, multi-domain organization. PMID:27808246
Resistance of Permafrost and Modern Acinetobacter lwoffii Strains to Heavy Metals and Arsenic Revealed by Genome Analysis. PMID:27795957
CoSpliceNet: a framework for co-splicing network inference from transcriptomics data. PMID:27793091
Plant-Specific Preprotein and Amino Acid Transporter Proteins Are Required for tRNA Import into Mitochondria. PMID:27789739
Comprehensive analysis of trihelix genes and their expression under biotic and abiotic stresses in Populus trichocarpa. PMID:27782188
Alr2954 of Anabaena sp. PCC 7120 with ADP-ribose pyrophosphatase activity bestows abiotic stress tolerance in Escherichia coli. PMID:27778111
A computational interactome and functional annotation for the human proteome. PMID:27770567
Morphological and Transcriptomic Analysis of a Beetle Chemosensory System Reveals a Gnathal Olfactory Center. PMID:27751175
Comparative Genomic Analysis among Four Representative Isolates of Phytophthora sojae Reveals Genes under Evolutionary Selection. PMID:27746768
Complex Patterns of Association between Pleiotropy and Transcription Factor Evolution. PMID:27635052
Genome-Wide Analysis of the Glutathione S-Transferase Gene Family in Capsella rubella: Identification, Expression, and Biochemical Functions. PMID:27630652
Identification, Characterization, and Expression Analysis of Cell Wall Related Genes in Sorghum bicolor (L.) Moench, a Food, Fodder, and Biofuel Crop. PMID:27630645
Artificial Diiron Enzymes with a De Novo Designed Four-Helix Bundle Structure. PMID:27630532
Revisiting Myosin Families Through Large-scale Sequence Searches Leads to the Discovery of New Myosins. PMID:27597808
Transcriptome sequencing of Mycosphaerella fijiensis during association with Musa acuminata reveals candidate pathogenicity genes. PMID:27576702
Linker Flexibility Facilitates Module Exchange in Fungal Hybrid PKS-NRPS Engineering. PMID:27551732
Identification of Complete Repertoire of Apis florea Odorant Receptors Reveals Complex Orthologous Relationships with Apis mellifera. PMID:27540087
The DUF59 Containing Protein SufT Is Involved in the Maturation of Iron-Sulfur (FeS) Proteins during Conditions of High FeS Cofactor Demand in Staphylococcus aureus. PMID:27517714
Characterization of a New Cold-Adapted and Salt-Activated Polysaccharide Lyase Family 7 Alginate Lyase from Pseudoalteromonas sp. SM0524. PMID:27486451
Genome-wide Identification and Structural, Functional and Evolutionary Analysis of WRKY Components of Mulberry. PMID:27477686
Draft Genome Sequence of the Emerging Bivalve Pathogen Vibrio tubiashii subsp. europaeus. PMID:27469949
Disruption of Transporters Affiliated with Enantio-Pyochelin Biosynthesis Gene Cluster of Pseudomonas protegens Pf-5 Has Pleiotropic Effects. PMID:27442435
Two fatty acyl reductases involved in moth pheromone biosynthesis. PMID:27427355
Bioinformatics Prediction of Polyketide Synthase Gene Clusters from Mycosphaerella fijiensis. PMID:27388157
Misannotation Awareness: A Tale of Two Gene-Groups. PMID:27379147
The first characterization of multidrug and toxin extrusion (MATE/SLC47) proteins in zebrafish (Danio rerio). PMID:27357367
Metatranscriptomics reveals the molecular mechanism of large granule formation in granular anammox reactor. PMID:27319320
A Meiotic Drive Element in the Maize Pathogen Fusarium verticillioides Is Located Within a 102 kb Region of Chromosome V. PMID:27317777
Characterization of mycobacteria and mycobacteriophages isolated from compost at the São Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U. PMID:27316672
Characterization of Five Novel Brevibacillus Bacteriophages and Genomic Comparison of Brevibacillus Phages. PMID:27304881
Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile "Ferrovum". PMID:27303384
Identification of Multiple Loci Associated with Social Parasitism in Honeybees. PMID:27280405
The Proteome and Lipidome of Thermococcus kodakarensis across the Stationary Phase. PMID:27274708
Newly identified bacteriolytic enzymes that target a wide range of clinical isolates of Clostridium difficile. PMID:27260850
Toxoplasma gondii Cyclic AMP-Dependent Protein Kinase Subunit 3 Is Involved in the Switch from Tachyzoite to Bradyzoite Development. PMID:27247232
Unique lipid anchor attaches Vi antigen capsule to the surface of Salmonella enterica serovar Typhi. PMID:27226298
LAMP Detection Assays for Boxwood Blight Pathogens: A Comparative Genomics Approach. PMID:27199028
Genome-scale investigation of phenotypically distinct but nearly clonal Trichoderma strains. PMID:27190719
Phylogenetic and Genomic Analyses Resolve the Origin of Important Plant Genes Derived from Transposable Elements. PMID:27189548
Optimizing Hybrid de Novo Transcriptome Assembly and Extending Genomic Resources for Giant Freshwater Prawns (Macrobrachium rosenbergii): The Identification of Genes and Markers Associated with Reproduction. PMID:27164098
Cyanidin inhibits quorum signalling pathway of a food borne opportunistic pathogen. PMID:27162376
Genomes of parasitic nematodes (Meloidogyne hapla, Meloidogyne incognita, Ascaris suum and Brugia malayi) have a reduced complement of small RNA interference pathway genes: knockdown can reduce host infectivity of M. incognita. PMID:27126863
KvLEA, a New Isolated Late Embryogenesis Abundant Protein Gene from Kosteletzkya virginica Responding to Multiabiotic Stresses. PMID:27123459
CoReCG: a comprehensive database of genes associated with colon-rectal cancer. PMID:27114494
Divergence of RNA polymerase α subunits in angiosperm plastid genomes is mediated by genomic rearrangement. PMID:27087667
Functional Divergence of the Nuclear Receptor NR2C1 as a Modulator of Pluripotentiality During Hominid Evolution. PMID:27075724
Reconstructing the complex evolutionary history of mobile plasmids in red algal genomes. PMID:27030297
Site-Directed Mutagenesis from Arg195 to His of a Microalgal Putatively Chloroplastidial Glycerol-3-Phosphate Acyltransferase Causes an Increase in Phospholipid Levels in Yeast. PMID:27014309
Genomic Insight into the Host-Endosymbiont Relationship of Endozoicomonas montiporae CL-33(T) with its Coral Host. PMID:27014194
Prediction of the in planta Phakopsora pachyrhizi secretome and potential effector families. PMID:27010366
Genome-Wide Identification of R2R3-MYB Genes and Expression Analyses During Abiotic Stress in Gossypium raimondii. PMID:27009386
Characterisation of the Porphyromonas gingivalis Manganese Transport Regulator Orthologue. PMID:27007570
Transcription profile of Trichophyton rubrum conidia grown on keratin reveals the induction of an adhesin-like protein gene with a tandem repeat pattern. PMID:26993619
Genome-wide identification and characterization of Glyceraldehyde-3-phosphate dehydrogenase genes family in wheat (Triticum aestivum). PMID:26984398
Production of unstable proteins through the formation of stable core complexes. PMID:26983699
Genomic Analysis of Salmonella enterica Serovar Typhimurium Characterizes Strain Diversity for Recent U.S. Salmonellosis Cases and Identifies Mutations Linked to Loss of Fitness under Nitrosative and Oxidative Stress. PMID:26956590
Transcriptome analysis of stem wood of Nothapodytes nimmoniana (Graham) Mabb. identifies genes associated with biosynthesis of camptothecin, an anti-carcinogenic molecule. PMID:26949094
Genome-wide analysis, expression dynamics and varietal comparison of NAC gene family at various developmental stages in Morus notabilis. PMID:26942603
Bacterial Vegetative Insecticidal Proteins (Vip) from Entomopathogenic Bacteria. PMID:26935135
Towards the bridging of molecular genetics data across Xenopus species. PMID:26925848
Heterologous Production of the Marine Myxobacterial Antibiotic Haliangicin and Its Unnatural Analogues Generated by Engineering of the Biochemical Pathway. PMID:26915413
A Central Nervous System-Dependent Intron-Embedded Gene Encodes a Novel Murine Fyn Binding Protein. PMID:26901312
Genome-Based Selection and Characterization of Fusarium circinatum-Specific Sequences. PMID:26888868
Deubiquitylation of Protein Cargo Is Not an Essential Step in Exosome Formation. PMID:26884507
Allosteric substrate switching in a voltage-sensing lipid phosphatase. PMID:26878552
Molecular Evolution and Functional Diversification of Replication Protein A1 in Plants. PMID:26858742
Novel Virophages Discovered in a Freshwater Lake in China. PMID:26834726
Six Medicago truncatula Dicer-like protein genes are expressed in plant cells and upregulated in nodules. PMID:26825594
Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus "Ferrovum". PMID:26808278
Novel α-L-Fucosidases from a Soil Metagenome for Production of Fucosylated Human Milk Oligosaccharides. PMID:26800369
Proteomics analysis of global regulatory cascades involved in clavulanic acid production and morphological development in Streptomyces clavuligerus. PMID:26790415
Medically Relevant Acinetobacter Species Require a Type II Secretion System and Specific Membrane-Associated Chaperones for the Export of Multiple Substrates and Full Virulence. PMID:26764912
Isolation and Biosynthetic Analysis of Haliamide, a New PKS-NRPS Hybrid Metabolite from the Marine Myxobacterium Haliangium ochraceum. PMID:26751435
Insect Herbivory-Elicited GABA Accumulation in Plants is a Wound-Induced, Direct, Systemic, and Jasmonate-Independent Defense Response. PMID:26734035
Abundant Intergenic TAACTGA Direct Repeats and Putative Alternate RNA Polymerase β' Subunits in Marine Beggiatoaceae Genomes: Possible Regulatory Roles and Origins. PMID:26733950
Corynebacterium accolens Releases Antipneumococcal Free Fatty Acids from Human Nostril and Skin Surface Triacylglycerols. PMID:26733066
Characterization of the general stress response in Bartonella henselae. PMID:26724735
Search for genes responsible for the remarkably high acetic acid tolerance of a Zygosaccharomyces bailii-derived interspecies hybrid strain. PMID:26673744
Disruption of Golgi morphology and altered protein glycosylation in PLA2G6-associated neurodegeneration. PMID:26668131
A 2-Hydroxypyridine Catabolism Pathway in Rhodococcus rhodochrous Strain PY11. PMID:26655765
Structural Insight into How Bacteria Prevent Interference between Multiple Divergent Type IV Secretion Systems. PMID:26646013
Cloning, expression, and antiviral activity of interferon β from the Chinese microbat, Myotis davidii. PMID:26645237
Cloning and Functional Characterization of Two BTB Genes in the Predatory Mite Metaseiulus occidentalis. PMID:26640898
Draft Genome Sequence of the Marine Pathogen Vibrio coralliilyticus RE22. PMID:26634766
Production, crystallization and X-ray diffraction analysis of the protease CT441 from Chlamydia trachomatis. PMID:26625285
An Evolutionarily Young Polar Bear (Ursus maritimus) Endogenous Retrovirus Identified from Next Generation Sequence Data. PMID:26610552
Complete Genome Sequence of Caulobacter crescentus Podophage Percy. PMID:26607888
Complete genome sequence of bacteriophage P26218 infecting Rhodoferax sp. strain IMCC26218. PMID:26605005
Identification of Putative Nuclear Receptors and Steroidogenic Enzymes in Murray-Darling Rainbowfish (Melanotaenia fluviatilis) Using RNA-Seq and De Novo Transcriptome Assembly. PMID:26599404
Torsins: not your typical AAA+ ATPases. PMID:26592310
Defluviitalea phaphyphila sp. nov., a Novel Thermophilic Bacterium That Degrades Brown Algae. PMID:26590273
Draft genome sequence of Cellulomonas carbonis T26(T) and comparative analysis of six Cellulomonas genomes. PMID:26587181
Next-generation sequencing reveals differentially amplified tandem repeats as a major genome component of Northern Europe's oldest Camellia japonica. PMID:26582634
Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos. PMID:26572793
Evolution of the EKA family of powdery mildew avirulence-effector genes from the ORF 1 of a LINE retrotransposon. PMID:26556056
Zahedan rhabdovirus, a novel virus detected in ticks from Iran. PMID:26542354
Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors. PMID:26527297
The ABC transporter ABCG29 is involved in H2O2 tolerance and biocontrol traits in the fungus Clonostachys rosea. PMID:26520102
De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster. PMID:26505484
Complete genome sequence of Propionibacterium freudenreichii DSM 20271(T). PMID:26500719
Silencing NADPH-cytochrome P450 reductase results in reduced acaricide resistance in Tetranychus cinnabarinus (Boisduval). PMID:26493678
Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes. PMID:26493560
Insulin-like growth factor 1 (IGF-1) regulates prolactin, growth hormone, and IGF-1 receptor expression in the pituitary gland of the gilthead sea bream Sparus aurata. PMID:26486515
Evolutionary history of phosphatidylinositol- 3-kinases: ancestral origin in eukaryotes and complex duplication patterns. PMID:26482564
Identification of catalytically important residues of the carotenoid 1,2-hydratases from Rubrivivax gelatinosus and Thiocapsa roseopersicina. PMID:26481619
Identification of two mutations increasing the methanol tolerance of Corynebacterium glutamicum. PMID:26474849
Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia. PMID:26457128
Complete Genome Sequence of Caulobacter crescentus Siphophage Sansa. PMID:26450723
Complete Genome Sequence of Carbapenemase-Producing Klebsiella pneumoniae Myophage Matisse. PMID:26430049
Germinal Center Kinases SmKIN3 and SmKIN24 Are Associated with the Sordaria macrospora Striatin-Interacting Phosphatase and Kinase (STRIPAK) Complex. PMID:26418262
Evolution of Mycolic Acid Biosynthesis Genes and Their Regulation during Starvation in Mycobacterium tuberculosis. PMID:26416833
NbRABG3f, a member of Rab GTPase, is involved in Bamboo mosaic virus infection in Nicotiana benthamiana. PMID:26416342
Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival. PMID:26405831
Trypanosoma cruzi Binds to Cytokeratin through Conserved Peptide Motifs Found in the Laminin-G-Like Domain of the gp85/Trans-sialidase Proteins. PMID:26398185
Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores. PMID:26393325
Comparative genome-based identification of a cell wall-anchored protein from Lactobacillus plantarum increases adhesion of Lactococcus lactis to human epithelial cells. PMID:26370773
Arabidopsis TAF1 is an MRE11-interacting protein required for resistance to genotoxic stress and viability of the male gametophyte. PMID:26358508
Evolutionary History of the Photolyase/Cryptochrome Superfamily in Eukaryotes. PMID:26352435
A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis. PMID:26351307
Cadmium induces cadmium-tolerant gene expression in the filamentous fungus Trichoderma harzianum. PMID:26349455
NCBI BLAST+ integrated into Galaxy. PMID:26336600
Genome mining for natural product biosynthetic gene clusters in the Subsection V cyanobacteria. PMID:26335778
The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity. PMID:26335566
Isolation and Expression Analysis of CYP9A11 and Cytochrome P450 Reductase Gene in the Beet Armyworm (Lepidoptera: Noctuidae). PMID:26320261
Conservation of the Host-Interacting Proteins Tp0750 and Pallilysin among Treponemes and Restriction of Proteolytic Capacity to Treponema pallidum. PMID:26283341
Proteome analysis of shell matrix proteins in the brachiopod Laqueus rubellus. PMID:26279640
Hypoxia-Inducible Factor α and Hif-prolyl Hydroxylase Characterization and Gene Expression in Short-Time Air-Exposed Mytilus galloprovincialis. PMID:26277612
Putative type 1 thymidylate synthase and dihydrofolate reductase as signature genes of a novel Bastille-like group of phages in the subfamily Spounavirinae. PMID:26250905
Quercetin Influences Quorum Sensing in Food Borne Bacteria: In-Vitro and In-Silico Evidence. PMID:26248208
RNA-seq reveals the critical role of OtpR in regulating Brucella melitensis metabolism and virulence under acidic stress. PMID:26242322
"PP2C7s", Genes Most Highly Elaborated in Photosynthetic Organisms, Reveal the Bacterial Origin and Stepwise Evolution of PPM/PP2C Protein Phosphatases. PMID:26241330
Genome wide comprehensive analysis and web resource development on cell wall degrading enzymes from phyto-parasitic nematodes. PMID:26232118
Biochemical and Spectroscopic Studies of Epoxyqueuosine Reductase: A Novel Iron-Sulfur Cluster- and Cobalamin-Containing Protein Involved in the Biosynthesis of Queuosine. PMID:26230193
Draft genomic sequence of a selenite-reducing bacterium, Paenirhodobacter enshiensis DW2-9(T). PMID:26221419
Phytochrome diversity in green plants and the origin of canonical plant phytochromes. PMID:26215968
Characterization by Small RNA Sequencing of Taro Bacilliform CH Virus (TaBCHV), a Novel Badnavirus. PMID:26207896
The conserved carboxyl domain of MorC, an inner membrane protein of Aggregatibacter actinomycetemcomitans, is essential for membrane function. PMID:26205976
Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota. PMID:26203339
Genomic and Functional Portrait of a Highly Virulent, CTX-M-15-Producing H30-Rx Subclone of Escherichia coli Sequence Type 131. PMID:26195517
Tsv-N1: A Novel DNA Algal Virus that Infects Tetraselmis striata. PMID:26193304
Genome-wide identification and expression characterization of ABCC-MRP transporters in hexaploid wheat. PMID:26191068
Three genes encoding AOP2, a protein involved in aliphatic glucosinolate biosynthesis, are differentially expressed in Brassica rapa. PMID:26188204
Degradation of Granular Starch by the Bacterium Microbacterium aurum Strain B8.A Involves a Modular α-Amylase Enzyme System with FNIII and CBM25 Domains. PMID:26187958
The SARP Family Regulator Txn9 and Two-Component Response Regulator Txn11 are Key Activators for Trioxacarcin Biosynthesis in Streptomyces bottropensis. PMID:26178900
Genome and secretome analyses provide insights into keratin decomposition by novel proteases from the non-pathogenic fungus Onygena corvina. PMID:26177915
In Silico Structural and Functional Annotation of Hypothetical Proteins of Vibrio cholerae O139. PMID:26175663
The molecular evolution of spiggin nesting glue in sticklebacks. PMID:26173374
New classes of self-cleaving ribozymes revealed by comparative genomics analysis. PMID:26167874
In Silico/In Vivo Insights into the Functional and Evolutionary Pathway of Pseudomonas aeruginosa Oleate-Diol Synthase. Discovery of a New Bacterial Di-Heme Cytochrome C Peroxidase Subfamily. PMID:26154497
Identification and Characterization of 40 Isolated Rehmannia glutinosa MYB Family Genes and Their Expression Profiles in Response to Shading and Continuous Cropping. PMID:26147429
Diversity and evolution of cytochrome P450 monooxygenases in Oomycetes. PMID:26129850
Expression of Five Endopolygalacturonase Genes and Demonstration that MfPG1 Overexpression Diminishes Virulence in the Brown Rot Pathogen Monilinia fructicola. PMID:26120831
Molecular characterization of heat-shock protein 90 gene and its expression in Gobiocypris rarus juveniles exposed to pentachlorophenol. PMID:26119907
Discovery of microbial natural products by activation of silent biosynthetic gene clusters. PMID:26119570
Saliva from nymph and adult females of Haemaphysalis longicornis: a proteomic study. PMID:26104117
The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity. PMID:26095358
Cross Talk between KGF and KITLG Proteins Implicated with Ovarian Folliculogenesis in Buffalo Bubalus bubalis. PMID:26083339
Towards New Drug Targets? Function Prediction of Putative Proteins of Neisseria meningitidis MC58 and Their Virulence Characterization. PMID:26076386
Multi-instance multilabel learning with weak-label for predicting protein function in electricigens. PMID:26075251
Comprehensive analysis of sequences of a protein switch. PMID:26073558
Expansion and Functional Divergence of Jumonji C-Containing Histone Demethylases: Significance of Duplications in Ancestral Angiosperms and Vertebrates. PMID:26059336
Bicarbonate transporters in corals point towards a key step in the evolution of cnidarian calcification. PMID:26040894
Cracking the nodule worm code advances knowledge of parasite biology and biotechnology to tackle major diseases of livestock. PMID:26026709
Evolutionary, Comparative and Functional Analyses of the Brassinosteroid Receptor Gene, BRI1, in Wheat and Its Relation to Other Plant Genomes. PMID:26020768
Phenotypic and transcriptional profiling in Entamoeba histolytica reveal costs to fitness and adaptive responses associated with metronidazole resistance. PMID:25999919
The cytoplasmic prolyl-tRNA synthetase of the malaria parasite is a dual-stage target of febrifugine and its analogs. PMID:25995223
First Staphylococcal Cassette Chromosome mec Containing a mecB-Carrying Gene Complex Independent of Transposon Tn6045 in a Macrococcus canis Isolate from a Canine Infection. PMID:25987634
Genome-Wide Analysis of the AP2/ERF Transcription Factors Family and the Expression Patterns of DREB Genes in Moso Bamboo (Phyllostachys edulis). PMID:25985202
Metagenome Skimming of Insect Specimen Pools: Potential for Comparative Genomics. PMID:25979752
The Novel Gene CRNDE Encodes a Nuclear Peptide (CRNDEP) Which Is Overexpressed in Highly Proliferating Tissues. PMID:25978564
Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants. PMID:25977457
Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor. PMID:25976599
Planctomycetes do possess a peptidoglycan cell wall. PMID:25964217
Classification of fungal and bacterial lytic polysaccharide monooxygenases. PMID:25956378
Dicer-Dependent Biogenesis of Small RNAs and Evidence for MicroRNA-Like RNAs in the Penicillin Producing Fungus Penicillium chrysogenum. PMID:25955857
Identification and distribution of the NBS-LRR gene family in the Cassava genome. PMID:25948536
DNA METHYLTRANSFERASE 1 is involved in (m)CG and (m)CCG DNA methylation and is essential for sporophyte development in Physcomitrella patens. PMID:25944663
Detection and molecular characterisation of Grapevine Syrah virus-1 isolates from Central Europe. PMID:25940164
Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis. PMID:25928405
RNA-seq-Based Gene Annotation and Comparative Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements. PMID:25917918
Manual classification strategies in the ECOD database. PMID:25917548
REGULATOR OF BULB BIOGENESIS1 (RBB1) Is Involved in Vacuole Bulb Formation in Arabidopsis. PMID:25915922
Elucidating the composition and conservation of the autophagy pathway in photosynthetic eukaryotes. PMID:25915714
The evolutionary dynamics of major regulators for sexual development among Hymenoptera species. PMID:25914717
Computational identification and analysis of MADS box genes in Camellia sinensis. PMID:25914445
Identification of novel esterase-active enzymes from hot environments by use of the host bacterium Thermus thermophilus. PMID:25904908
Strawberry notch homolog 2 is a novel inflammatory response factor predominantly but not exclusively expressed by astrocytes in the central nervous system. PMID:25903009
Characterization of unusual truncated hemoglobins of Chlamydomonas reinhardtii suggests specialized functions. PMID:25893868
Drosophila dicer-2 cleavage is mediated by helicase- and dsRNA termini-dependent states that are modulated by Loquacious-PD. PMID:25891075
Genome comparison provides molecular insights into the phylogeny of the reassigned new genus Lysinibacillus. PMID:25888315
Babela massiliensis, a representative of a widespread bacterial phylum with unusual adaptations to parasitism in amoebae. PMID:25884386
Personalized genomic analyses for cancer mutation discovery and interpretation. PMID:25877891
Characterization of KfrA proteins encoded by a plasmid of Paenibacillus popilliae ATCC 14706(T). PMID:25853059
Characterization and structure prediction of partial length protein sequences of pcoA, pcoR and chrB genes from heavy metal resistant bacteria from the Klip River, South Africa. PMID:25837632
Analysis of Streptococcus agalactiae pan-genome for prevalence, diversity and functionality of integrative and conjugative or mobilizable elements integrated in the tRNA(Lys CTT) gene. PMID:25832353
Prevalence of bovine theileriosis in North Central region of Algeria by real-time polymerase chain reaction with a note on its distribution. PMID:25827097
Selective sweep analysis in the genomes of the 91-R and 91-C Drosophila melanogaster strains reveals few of the 'usual suspects' in dichlorodiphenyltrichloroethane (DDT) resistance. PMID:25826265
Enhancing alkane production in cyanobacterial lipid droplets: a model platform for industrially relevant compound production. PMID:25821934
Characterization of the Xylella fastidiosa PD1671 gene encoding degenerate c-di-GMP GGDEF/EAL domains, and its role in the development of Pierce's disease. PMID:25811864
Structural models of zebrafish (Danio rerio) NOD1 and NOD2 NACHT domains suggest differential ATP binding orientations: insights from computational modeling, docking and molecular dynamics simulations. PMID:25811192
Brachypodium as an emerging model for cereal-pathogen interactions. PMID:25808446
COMP-1 promotes competitive advantage of nematode sperm. PMID:25789512
Structure and functional annotation of hypothetical proteins having putative Rubisco activase function from Vitis vinifera. PMID:25780274
The broad-spectrum antibiotic, zeamine, kills the nematode worm Caenorhabditis elegans. PMID:25767467
Improving the consistency of domain annotation within the Conserved Domain Database. PMID:25767294
High correlation between genotypes and phenotypes of environmental bacteria Comamonas testosteroni strains. PMID:25766446
In silico analysis of usher encoding genes in Klebsiella pneumoniae and characterization of their role in adhesion and colonization. PMID:25751658
Lactococcal 949 group phages recognize a carbohydrate receptor on the host cell surface. PMID:25746988
Recombinant NAD-dependent SIR-2 protein of Leishmania donovani: immunobiochemical characterization as a potential vaccine against visceral leishmaniasis. PMID:25745863
Lincosamide synthetase--a unique condensation system combining elements of nonribosomal peptide synthetase and mycothiol metabolism. PMID:25741696
Drosophila muller f elements maintain a distinct set of genomic properties over 40 million years of evolution. PMID:25740935
Proteomic analysis of the soybean symbiosome identifies new symbiotic proteins. PMID:25724908
A patatin-like protein associated with the polyhydroxyalkanoate (PHA) granules of Haloferax mediterranei acts as an efficient depolymerase in the degradation of native PHA. PMID:25710370
Archaeal extrachromosomal genetic elements. PMID:25694123
Inhibition of the growth of Bacillus subtilis DSM10 by a newly discovered antibacterial protein from the soil metagenome. PMID:25692994
Lineage-specific evolution of Methylthioalkylmalate synthases (MAMs) involved in glucosinolates biosynthesis. PMID:25691886
Disruption of the membrane nuclease gene (MBOVPG45_0215) of Mycoplasma bovis greatly reduces cellular nuclease activity. PMID:25691526
Discovery of novel S. aureus autolysins and molecular engineering to enhance bacteriolytic activity. PMID:25690309
Molecular evolution of cytochrome bd oxidases across proteobacterial genomes. PMID:25688108
Experimental strategies for the identification and characterization of adhesive proteins in animals: a review. PMID:25657842
Complete Genome of Citrobacter freundii Siphophage Stevie. PMID:25657269
Identification of Coq11, a new coenzyme Q biosynthetic protein in the CoQ-synthome in Saccharomyces cerevisiae. PMID:25631044
MpSaci is a widespread gypsy-Ty3 retrotransposon highly represented by non-autonomous copies in the Moniliophthora perniciosa genome. PMID:25614078
DBC1/CCAR2 and CCAR1 Are Largely Disordered Proteins that Have Evolved from One Common Ancestor. PMID:25610865
Dark-induced senescence of barley leaves involves activation of plastid transglutaminases. PMID:25583605
Distinct roles for carbohydrate-binding modules of glycoside hydrolase 10 (GH10) and GH11 xylanases from Caldicellulosiruptor sp. strain F32 in thermostability and catalytic efficiency. PMID:25576604
Isolation and characterization of novel lipases/esterases from a bovine rumen metagenome. PMID:25575887
A new family of secreted toxins in pathogenic Neisseria species. PMID:25569427
Tsetse GmmSRPN10 has anti-complement activity and is important for successful establishment of trypanosome infections in the fly midgut. PMID:25569180
High temporal and spatial diversity in marine RNA viruses implies that they have an important role in mortality and structuring plankton communities. PMID:25566218
Identification and computational analysis of gene regulatory elements. PMID:25561628
Multiscale investigation of mealiness in apple: an atypical role for a pectin methylesterase during fruit maturation. PMID:25551767
Plasmodium vivax trophozoite-stage proteomes. PMID:25545414
Metazoan remaining genes for essential amino acid biosynthesis: sequence conservation and evolutionary analyses. PMID:25545100
Adaptive regulation of testis gene expression and control of male fertility by the Drosophila hairpin RNA pathway. [Corrected]. PMID:25544562
Core and accessory genome architecture in a group of Pseudomonas aeruginosa Mu-like phages. PMID:25527250
NEDD4: The founding member of a family of ubiquitin-protein ligases. PMID:25527121
The spliceosomal PRP19 complex of trypanosomes. PMID:25524563
Tissue-specific transcriptomics, chromosomal localization, and phylogeny of chemosensory and odorant binding proteins from the red flour beetle Tribolium castaneum reveal subgroup specificities for olfaction or more general functions. PMID:25523483
Computational extraction of a neural molecular network through alternative splicing. PMID:25523101
Characterization of the Ca2+-gated and voltage-dependent K+-channel Slo-1 of nematodes and its interaction with emodepside. PMID:25521608
Conserved syntenic clusters of protein coding genes are missing in birds. PMID:25518852
Genome-wide and molecular evolution analysis of the subtilase gene family in Vitis vinifera. PMID:25512249
Functional analysis of the Brassica napus L. phytoene synthase (PSY) gene family. PMID:25506829
Novel phage group infecting Lactobacillus delbrueckii subsp. lactis, as revealed by genomic and proteomic analysis of bacteriophage Ldl1. PMID:25501478
Identification of single nucleotide polymorphisms in Toll-like receptor candidate genes associated with tuberculosis infection in water buffalo (Bubalus bubalis). PMID:25496717
Chaperone-usher fimbriae in a diverse selection of Gallibacterium genomes. PMID:25495603
Experimental determination and characterization of the gap promoter of Bifidobacterium bifidum S17. PMID:25482086
Computational and experimental analysis of the secretome of Methylococcus capsulatus (Bath). PMID:25479164
Genomic diversification in strains of Rickettsia felis Isolated from different arthropods. PMID:25477419
ECOD: an evolutionary classification of protein domains. PMID:25474468
Evolution of a plant-specific copper chaperone family for chloroplast copper homeostasis. PMID:25468978
Mutations affecting the BHLHA9 DNA-binding domain cause MSSD, mesoaxial synostotic syndactyly with phalangeal reduction, Malik-Percin type. PMID:25466284
Several genes encoding enzymes with the same activity are necessary for aerobic fungal degradation of cellulose in nature. PMID:25461894
An ancient autoproteolytic domain found in GAIN, ZU5 and Nucleoporin98. PMID:25451782
The contribution of rare and common variants in 30 genes to risk nicotine dependence. PMID:25450229
Genomics-Based Exploration of Virulence Determinants and Host-Specific Adaptations of Pseudomonas syringae Strains Isolated from Grasses. PMID:25437611
Bioenergetic evolution in proteobacteria and mitochondria. PMID:25432941
RNase E in the γ-Proteobacteria: conservation of intrinsically disordered noncatalytic region and molecular evolution of microdomains. PMID:25432321
A directed-overflow and damage-control N-glycosidase in riboflavin biosynthesis. PMID:25431972
Flower development, pollen fertility and sex expression analyses of three sexual phenotypes of Coccinia grandis. PMID:25430000
Mycobacterium tuberculosis Serine/Threonine Protein Kinases. PMID:25429354
Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments. PMID:25426110
Genome wide in silico analysis of Plasmodium falciparum phosphatome. PMID:25425018
Genome-wide analysis of the WW domain-containing protein genes in silkworm and their expansion in eukaryotes. PMID:25424044
Domain interactions control complex formation and polymerase specificity in the biosynthesis of the Escherichia coli O9a antigen. PMID:25422321
Genome-wide identification and expression profile analysis of citrus sucrose synthase genes: investigation of possible roles in the regulation of sugar accumulation. PMID:25420091
The genome of the generalist plant pathogen Fusarium avenaceum is enriched with genes involved in redox, signaling and secondary metabolism. PMID:25409087
Early chordate origin of the vertebrate integrin αI domains. PMID:25409021
Genome-wide identification of nuclear receptor (NR) superfamily genes in the copepod Tigriopus japonicus. PMID:25407996
Intraspecies comparison of Streptomyces pratensis genomes reveals high levels of recombination and gene conservation between strains of disparate geographic origin. PMID:25399205
Database resources of the National Center for Biotechnology Information. PMID:25398906
A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode. PMID:25398855
Genetic characterization of goutanap virus, a novel virus related to negeviruses, cileviruses and higreviruses. PMID:25398046
Pre-metazoan origins and evolution of the cadherin adhesome. PMID:25395670
Three novel virophage genomes discovered from Yellowstone Lake metagenomes. PMID:25392206
A novel alkyl hydroperoxidase (AhpD) of Anabaena PCC7120 confers abiotic stress tolerance in Escherichia coli. PMID:25391500
Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. PMID:25381880
The Dictyostelium discoideum GPHR ortholog is an endoplasmic reticulum and Golgi protein with roles during development. PMID:25380752
Insights into the posttranslational assembly of the Mo-, S- and Cu-containing cluster in the active site of CO dehydrogenase of Oligotropha carboxidovorans. PMID:25377894
Whole genome sequence of the Treponema pallidum subsp. endemicum strain Bosnia A: the genome is related to yaws treponemes but contains few loci similar to syphilis treponemes. PMID:25375929
Cloning and Expression Profiling of the Polycomb Gene, Retinoblastoma-related Protein from Tomato Solanum lycopersicum L. PMID:25374451
A novel member of glycoside hydrolase family 30 subfamily 8 with altered substrate specificity. PMID:25372685
The influence of iron on the proteomic profile of Chromobacterium violaceum. PMID:25361869
Genomic characterization of a temperate phage of the psychrotolerant deep-sea bacterium Aurantimonas sp. PMID:25354565
Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis. PMID:25351875
Genomic Investigations unmask Mycoplasma amphoriforme, a new respiratory pathogen. PMID:25344534
Draft Genome Sequence of the Iron-Oxidizing, Acidophilic, and Halotolerant "Thiobacillus prosperus" Type Strain DSM 5130. PMID:25342676
Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida. PMID:25342461
Clathrin heavy chain is important for viability, oviposition, embryogenesis and, possibly, systemic RNAi response in the predatory mite Metaseiulus occidentalis. PMID:25329675
De novo assembly and characterization of the transcriptome of the toxic dinoflagellate Karenia brevis. PMID:25306556
Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens. PMID:25306241
A simple isothermal DNA amplification method to screen black flies for Onchocerca volvulus infection. PMID:25299656
Systematic analysis of Zn2Cys6 transcription factors required for development and pathogenicity by high-throughput gene knockout in the rice blast fungus. PMID:25299517
Transcriptome sequencing of rhizome tissue of Sinopodophyllum hexandrum at two temperatures. PMID:25287271
Expression profile of the Schistosoma japonicum degradome reveals differential protease expression patterns and potential anti-schistosomal intervention targets. PMID:25275570
The P-loop region of Schlafen 3 acts within the cytosol to induce differentiation of human Caco-2 intestinal epithelial cells. PMID:25261706
Domain analyses of Usher syndrome causing Clarin-1 and GPR98 protein models. PMID:25258483
History of a prolific family: the Hes/Hey-related genes of the annelid Platynereis. PMID:25250171
Monotreme lactation protein is highly expressed in monotreme milk and provides antimicrobial protection. PMID:25245409
Operon for biosynthesis of lipstatin, the Beta-lactone inhibitor of human pancreatic lipase. PMID:25239907
Human germline and pan-cancer variomes and their distinct functional profiles. PMID:25232094
In silico prediction of Gallibacterium anatis pan-immunogens. PMID:25223320
Cytochrome P450 monooxygenase CYP53 family in fungi: comparative structural and evolutionary analysis and its role as a common alternative anti-fungal drug target. PMID:25222113
Genome organisation of the Acinetobacter lytic phage ZZ1 and comparison with other T4-like Acinetobacter phages. PMID:25218338
Exposing the secrets of two well-known Lactobacillus casei phages, J-1 and PL-1, by genomic and structural analysis. PMID:25217012
cddApp: a Cytoscape app for accessing the NCBI conserved domain database. PMID:25212755
Molecular insight into the role of the N-terminal extension in the maturation, substrate recognition, and catalysis of a bacterial alginate lyase from polysaccharide lyase family 18. PMID:25210041
Changes of the human gut microbiome induced by a fermented milk product. PMID:25209713
Insilico analysis of hypothetical proteins unveils putative metabolic pathways and essential genes in Leishmania donovani. PMID:25206363
Genome wide screening of RNAi factors of Sf21 cells reveal several novel pathway associated proteins. PMID:25199785
Noncanonical SMC protein in Mycobacterium smegmatis restricts maintenance of Mycobacterium fortuitum plasmids. PMID:25197070
Mutation in the novel nuclear-encoded mitochondrial protein CHCHD10 in a family with autosomal dominant mitochondrial myopathy. PMID:25193783
Smoothened gene alterations in keratocystic odontogenic tumors. PMID:25189937
Daily rhythms in expression of genes of hepatic lipid metabolism in Atlantic salmon (Salmo salar L.). PMID:25184355
Overexpression of p49/STRAP alters cellular cytoskeletal structure and gross anatomy in mice. PMID:25183317
Microsporidian genomes harbor a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans. PMID:25172905
Comparative genome analysis and identification of competitive and cooperative interactions in a polymicrobial disease. PMID:25171331
Whole genome sequencing and analysis of plant growth promoting bacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanut. PMID:25162593
CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci. PMID:25161238
Extracellular secretion of noncatalytic plant cell wall-binding proteins by the cellulolytic thermophile Caldicellulosiruptor bescii. PMID:25157080
Current functional metagenomic approaches only expand the existing protease sequence space, but does not presently add any novelty to it. PMID:25141963
Suppression of NGB and NAB/ERabp1 in tomato modifies root responses to potato cyst nematode infestation. PMID:25131407
QTug.sau-3B is a major quantitative trait locus for wheat hexaploidization. PMID:25128436
PlantCAZyme: a database for plant carbohydrate-active enzymes. PMID:25125445
Mutations in the primary sigma factor σA and termination factor rho that reduce susceptibility to cell wall antibiotics. PMID:25112476
In silico study of binding motifs in squalene synthase enzyme of secondary metabolic pathway of solanaceae [corrected]. PMID:25106523
Comparative analysis of carbohydrate active enzymes in Clostridium termitidis CT1112 reveals complex carbohydrate degradation ability. PMID:25101643
Transcriptome-wide analysis of WRKY transcription factors in wheat and their leaf rust responsive expression profiling. PMID:25098419
Post-translational regulation of rice MADS29 function: homodimerization or binary interactions with other seed-expressed MADS proteins modulate its translocation into the nucleus. PMID:25096923
Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1. PMID:25092327
RNA-seq-mediated transcriptome analysis of actively growing and winter dormant shoots identifies non-deciduous habit of evergreen tree tea during winters. PMID:25090269
Bioinformatics approaches for structural and functional analysis of proteins in secondary metabolism in Withania somnifera. PMID:25085038
Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum 'Diapherotrites'. PMID:25083931
Non-coding polymorphisms in nucleotide binding domain 1 in ABCC1 gene associate with transcript level and survival of patients with breast cancer. PMID:25078270
Mitochondrial genomic variation associated with higher mitochondrial copy number: the Cache County Study on Memory Health and Aging. PMID:25077862
Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris). PMID:25071814
Redox proteomics changes in the fungal pathogen Trichosporon asahii on arsenic exposure: identification of protein responses to metal-induced oxidative stress in an environmentally-sampled isolate. PMID:25062082
Metagenomic identification of a novel salt tolerance gene from the human gut microbiome which encodes a membrane protein with homology to a brp/blh-family β-carotene 15,15'-monooxygenase. PMID:25058308
The spectrum of major seed storage genes and proteins in oats (Avena sativa). PMID:25054628
Molecular characterization of a heterothallic mating system in Pseudogymnoascus destructans, the Fungus causing white-nose syndrome of bats. PMID:25053709
Identification of small secreted peptides (SSPs) in maize and expression analysis of partial SSP genes in reproductive tissues. PMID:25048445
In silico single strand melting curve: a new approach to identify nucleic acid polymorphisms in Totiviridae. PMID:25030031
Comparative genome sequencing reveals chemotype-specific gene clusters in the toxigenic black mold Stachybotrys. PMID:25015739
cGMP and NHR signaling co-regulate expression of insulin-like peptides and developmental activation of infective larvae in Strongyloides stercoralis. PMID:25010340
Molecular characterization of three Lactobacillus delbrueckii subsp. bulgaricus phages. PMID:25002431
Genome sequence of Candidatus Nitrososphaera evergladensis from group I.1b enriched from Everglades soil reveals novel genomic features of the ammonia-oxidizing archaea. PMID:24999826
Secreted proteomes of different developmental stages of the gastrointestinal nematode Nippostrongylus brasiliensis. PMID:24994561
The Tn7 transposition regulator TnsC interacts with the transposase subunit TnsB and target selector TnsD. PMID:24982178
Experimental and bioinformatic characterization of a recombinant polygalacturonase-inhibitor protein from pearl millet and its interaction with fungal polygalacturonases. PMID:24980909
Comparative studies of vertebrate Beta integrin genes and proteins: ancient genes in vertebrate evolution. PMID:24970121
Evaluation of the Schistosoma mansoni Y-box-binding protein (SMYB1) potential as a vaccine candidate against schistosomiasis. PMID:24966869
DINE-1, the highest copy number repeats in Drosophila melanogaster are non-autonomous endonuclease-encoding rolling-circle transposable elements (Helentrons). PMID:24959209
Analyses of Catharanthus roseus and Arabidopsis thaliana WRKY transcription factors reveal involvement in jasmonate signaling. PMID:24950738
The structure and dynamics of BmR1 protein from Brugia malayi: in silico approaches. PMID:24950179
IIS--Integrated Interactome System: a web-based platform for the annotation, analysis and visualization of protein-metabolite-gene-drug interactions by integrating a variety of data sources and tools. PMID:24949626
Aflatoxin detoxification by manganese peroxidase purified from Pleurotus ostreatus. PMID:24948923
Rational design and validation of a Tip60 histone acetyltransferase inhibitor. PMID:24947938
The characterization of RNA viruses in tropical seawater using targeted PCR and metagenomics. PMID:24939887
A new F131V mutation in Chlamydomonas phytoene desaturase locates a cluster of norflurazon resistance mutations near the FAD-binding site in 3D protein models. PMID:24936791
Transcriptome profiling to discover putative genes associated with paraquat resistance in goosegrass (Eleusine indica L.). PMID:24927422
The evolution and appearance of C3 duplications in fish originate an exclusive teleost c3 gene form with anti-inflammatory activity. PMID:24926798
CcpA is important for growth and virulence of Enterococcus faecium. PMID:24914215
Plant, animal, and fungal micronutrient queuosine is salvaged by members of the DUF2419 protein family. PMID:24911101
Identification of B cells as a major site for cyprinid herpesvirus 3 latency. PMID:24899202
Genome-wide analysis of regulatory proteases sequences identified through bioinformatics data mining in Taenia solium. PMID:24899069
Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States. PMID:24898914
A recently transferred cluster of bacterial genes in Trichomonas vaginalis--lateral gene transfer and the fate of acquired genes. PMID:24898731
Identification and Expression Profiling of the BTB Domain-Containing Protein Gene Family in the Silkworm, Bombyx mori. PMID:24895545
Rare key functional domain missense substitutions in MRE11A, RAD50, and NBN contribute to breast cancer susceptibility: results from a Breast Cancer Family Registry case-control mutation-screening study. PMID:24894818
A framework for application of metabolic modeling in yeast to predict the effects of nsSNV in human orthologs. PMID:24894379
PsMPK7, a stress-associated mitogen-activated protein kinase (MAPK) in Phytophthora sojae, is required for stress tolerance, reactive oxygenated species detoxification, cyst germination, sexual reproduction and infection of soybean. PMID:24889742
Genomic analysis of the emergence of 20th century epidemic dysentery. PMID:24886041
The nuclear receptor gene family in the Pacific oyster, Crassostrea gigas, contains a novel subfamily group. PMID:24885009
Molecular characterization of the SPL gene family in Populus trichocarpa. PMID:24884654
Conservation of sequence and function in fertilization of the cortical granule serine protease in echinoderms. PMID:24878526
Differential inductions of phenylalanine ammonia-lyase and chalcone synthase during wounding, salicylic acid treatment, and salinity stress in safflower, Carthamus tinctorius. PMID:24865400
Evolutionary history of trihelix family and their functional diversification. PMID:24864043
Excreted/secreted Schistosoma mansoni venom allergen-like 9 (SmVAL9) modulates host extracellular matrix remodelling gene expression. PMID:24859313
Characterization of a Mycobacterium tuberculosis nanocompartment and its potential cargo proteins. PMID:24855650
Arrangement of the Clostridium baratii F7 toxin gene cluster with identification of a σ factor that recognizes the botulinum toxin gene cluster promoters. PMID:24853378
A gene horizontally transferred from bacteria protects arthropods from host plant cyanide poisoning. PMID:24843024
Insights from the genome annotation of Elizabethkingia anophelis from the malaria vector Anopheles gambiae. PMID:24842809
Finding sequences for over 270 orphan enzymes. PMID:24826896
First report of a thioredoxin homologue in jellyfish: molecular cloning, expression and antioxidant activity of CcTrx1 from Cyanea capillata. PMID:24824597
Recent Advances in the Identification of Replication Origins Based on the Z-curve Method. PMID:24822028
Murein lytic enzyme TgaA of Bifidobacterium bifidum MIMBb75 modulates dendritic cell maturation through its cysteine- and histidine-dependent amidohydrolase/peptidase (CHAP) amidase domain. PMID:24814791
Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants. PMID:24812252
Predicting the minimal translation apparatus: lessons from the reductive evolution of mollicutes. PMID:24809820
CMT-associated mutations in glycyl- and tyrosyl-tRNA synthetases exhibit similar pattern of toxicity and share common genetic modifiers in Drosophila. PMID:24807208
Evolution of mitochondria reconstructed from the energy metabolism of living bacteria. PMID:24804722
Evolution at protein ends: major contribution of alternative transcription initiation and termination to the transcriptome and proteome diversity in mammals. PMID:24792168
Discovery and confirmation of ligand binding specificities of the Schistosoma japonicum polarity protein Scribble. PMID:24784152
In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing. PMID:24777092
Odorant and gustatory receptors in the tsetse fly Glossina morsitans morsitans. PMID:24763191
LMKB/MARF1 localizes to mRNA processing bodies, interacts with Ge-1, and regulates IFI44L gene expression. PMID:24755989
Molecular characterization and expression of a novel alcohol oxidase from Aspergillus terreus MTCC6324. PMID:24752075
Comparative analysis of P450 signature motifs EXXR and CXG in the large and diverse kingdom of fungi: identification of evolutionarily conserved amino acid patterns characteristic of P450 family. PMID:24743800
From local structure to a global framework: recognition of protein folds. PMID:24740960
Newly derived GH43 gene from compost metagenome showing dual xylanase and cellulase activities. PMID:24737296
Sea star tenacity mediated by a protein that fragments, then aggregates. PMID:24733908
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns. PMID:24733898
Identification, molecular cloning and expression analysis of five RNA-dependent RNA polymerase genes in Salvia miltiorrhiza. PMID:24733018
Trehalose synthesis in Aspergillus niger: characterization of six homologous genes, all with conserved orthologs in related species. PMID:24725382
Type Three Secretion System in Pseudomonas savastanoi Pathovars: Does Timing Matter? PMID:24710300
The hypothetical protein 'All4779', and not the annotated 'Alr0088' and 'Alr7579' proteins, is the major typical single-stranded DNA binding protein of the cyanobacterium, Anabaena sp. PCC7120. PMID:24705540
The recA operon: A novel stress response gene cluster in Bacteroides fragilis. PMID:24703997
Evolution of PAS domains and PAS-containing genes in eukaryotes. PMID:24699836
Evolution of the B-Block Binding Subunit of TFIIIC That Binds to the Internal Promoter for RNA Polymerase III. PMID:24688796
Fibronectin-binding protein of Borrelia hermsii expressed in the blood of mice with relapsing fever. PMID:24686059
Global dissection of alternative splicing in paleopolyploid soybean. PMID:24681622
Identification of key components in the energy metabolism of the hyperthermophilic sulfate-reducing archaeon Archaeoglobus fulgidus by transcriptome analyses. PMID:24672515
Comparative complete genome analysis of chicken and Turkey megriviruses (family picornaviridae): long 3' untranslated regions with a potential second open reading frame and evidence for possible recombination. PMID:24672039
Peroxidase gene discovery from the horseradish transcriptome. PMID:24666710
Transcriptome analysis identifies Bacillus anthracis genes that respond to CO2 through an AtxA-dependent mechanism. PMID:24661624
Temperate Streptococcus thermophilus phages expressing superinfection exclusion proteins of the Ltp type. PMID:24659988
Evidence for interactions between the mitochondrial import apparatus and respiratory chain complexes via Tim21-like proteins in Arabidopsis. PMID:24653731
3D structure generation, virtual screening and docking of human Ras-associated binding (Rab3A) protein involved in tumourigenesis. PMID:24652202
Patterns of positive selection of the myogenic regulatory factor gene family in vertebrates. PMID:24651579
Genome wide survey and molecular modeling of hypothetical proteins containing 2Fe-2S and FMN binding domains suggests Rieske Dioxygenase Activity highlighting their potential roles in bioremediation. PMID:24616557
In silico characterization of an atypical MAPK phosphatase of Plasmodium falciparum as a suitable target for drug discovery. PMID:24605883
The adenylyl cyclase plays a regulatory role in the morphogenetic switch from vegetative to pathogenic lifestyle of Fusarium graminearum on wheat. PMID:24603887
BambooGDB: a bamboo genome database with functional annotation and an analysis platform. PMID:24602877
In silico analysis of AHJD-like viruses, Staphylococcus aureus phages S24-1 and S13', and study of phage S24-1 adsorption. PMID:24591378
Domain shuffling in a sensor protein contributed to the evolution of insect pathogenicity in plant-beneficial Pseudomonas protegens. PMID:24586167
Genome-wide identification, phylogeny, duplication, and expression analyses of two-component system genes in Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:24585003
Gene cloning and expression analysis of IRF1 in half-smooth tongue sole (Cynoglossus semilaevis). PMID:24584575
Sixteen cytosolic glutamine synthetase genes identified in the Brassica napus L. genome are differentially regulated depending on nitrogen regimes and leaf senescence. PMID:24567494
Evaluating, comparing, and interpreting protein domain hierarchies. PMID:24559108
In silico identification of transcription factors in Medicago sativa using available transcriptomic resources. PMID:24556904
On the extent and role of the small proteome in the parasitic eukaryote Trypanosoma brucei. PMID:24552149
Identification of mutations in TgMAPK1 of Toxoplasma gondii conferring resistance to 1NM-PP1. PMID:24533298
GtfA and GtfB are both required for protein O-glycosylation in Lactobacillus plantarum. PMID:24532775
Role of malic enzyme during fatty acid synthesis in the oleaginous fungus Mortierella alpina. PMID:24532075
Exome-wide association study identifies a TM6SF2 variant that confers susceptibility to nonalcoholic fatty liver disease. PMID:24531328
Structure prediction of magnetosome-associated proteins. PMID:24523717
Computational large-scale mapping of protein-protein interactions using structural complexes. PMID:24510594
Non contiguous-finished genome sequence of Pseudomonas syringae pathovar syringae strain B64 isolated from wheat. PMID:24501627
Insights into naturally minimised Streptomyces albus J1074 genome. PMID:24495463
A Bayesian sampler for optimization of protein domain hierarchies. PMID:24494927
Hydrophobins are required for conidial hydrophobicity and plant root colonization in the fungal biocontrol agent Clonostachys rosea. PMID:24483277
What does the talking?: quorum sensing signalling genes discovered in a bacteriophage genome. PMID:24475037
Prediction of monomer isomery in Florine: a workflow dedicated to nonribosomal peptide discovery. PMID:24465643
Utilizing multiple in silico analyses to identify putative causal SCN5A variants in Brugada syndrome. PMID:24463578
SSTY proteins co-localize with the post-meiotic sex chromatin and interact with regulators of its expression. PMID:24456183
Phages of non-dairy lactococci: isolation and characterization of ΦL47, a phage infecting the grass isolate Lactococcus lactis ssp. cremoris DPC6860. PMID:24454309
Evolutionary rate covariation identifies new members of a protein network required for Drosophila melanogaster female post-mating responses. PMID:24453993
An intron-containing, heat-inducible stress-70 gene in the millipede Tachypodoiulus niger (Julidae, Diplopoda). PMID:24446070
The barley Frost resistance-H2 locus. PMID:24442711
Bidirectional promoters are the major source of gene activation-associated non-coding RNAs in mammals. PMID:24438357
First report of a peroxiredoxin homologue in jellyfish: molecular cloning, expression and functional characterization of CcPrx4 from Cyanea capillata. PMID:24413803
A large scale Huntingtin protein interaction network implicates Rho GTPase signaling pathways in Huntington disease. PMID:24407293
Rational design of a new Trypanosoma rangeli trans-sialidase for efficient sialylation of glycans. PMID:24404142
Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis. PMID:24386201
Subtilase SprP exerts pleiotropic effects in Pseudomonas aeruginosa. PMID:24376018
Gene prioritization of resistant rice gene against Xanthomas oryzae pv. oryzae by using text mining technologies. PMID:24371834
A single CMT methyltransferase homolog is involved in CHG DNA methylation and development of Physcomitrella patens. PMID:24370935
Dysferlin is essential for endocytosis in the sea star oocyte. PMID:24368072
A guide to bioinformatics for immunologists. PMID:24363654
Germline loss-of-function mutations in LZTR1 predispose to an inherited disorder of multiple schwannomas. PMID:24362817
A distinct and divergent lineage of genomic island-associated Type IV Secretion Systems in Legionella. PMID:24358157
Complete Genome of Salmonella enterica Serovar Typhimurium Myophage Maynard. PMID:24356822
Functional environmental screening of a metagenomic library identifies stlA; a unique salt tolerance locus from the human gut microbiome. PMID:24349412
Wolbachia variants induce differential protection to viruses in Drosophila melanogaster: a phenotypic and phylogenomic analysis. PMID:24348259
Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation. PMID:24341328
De novo assembly of a field isolate genome reveals novel Plasmodium vivax erythrocyte invasion genes. PMID:24340114
Chorismate pyruvate-lyase and 4-hydroxy-3-solanesylbenzoate decarboxylase are required for plastoquinone biosynthesis in the cyanobacterium Synechocystis sp. PCC6803. PMID:24337576
Molecular strategies of the Caenorhabditis elegans dauer larva to survive extreme desiccation. PMID:24324795
The structure of Rv3717 reveals a novel amidase from Mycobacterium tuberculosis. PMID:24311595
The multifunctional role of the pallilysin-associated Treponema pallidum protein, Tp0750, in promoting fibrinolysis and extracellular matrix component degradation. PMID:24303899
Regulation of abiotic stress signalling by Arabidopsis C-terminal domain phosphatase-like 1 requires interaction with a k-homology domain-containing protein. PMID:24303021
Different CHD chromatin remodelers are required for expression of distinct gene sets and specific stages during development of Dictyostelium discoideum. PMID:24301467
Molecular Cloning and Nucleotide Sequence of the Gene for an Alkaline Protease from Bacillus circulans MTCC 7906. PMID:24293722
Phylogenetic and transcriptional analysis of an expanded bZIP transcription factor family in Phytophthora sojae. PMID:24286285
Knockdown of selenocysteine-specific elongation factor in Amblyomma maculatum alters the pathogen burden of Rickettsia parkeri with epigenetic control by the Sin3 histone deacetylase corepressor complex. PMID:24282621
YGL138(t), encoding a putative signal recognition particle 54 kDa protein, is involved in chloroplast development of rice. PMID:24280537
Characterization of the Pseudomonas aeruginosa metalloendopeptidase, Mep72, a member of the Vfr regulon. PMID:24279383
Lack of plasma kallikrein-kinin system cascade in teleosts. PMID:24278376
Acquisition of an Archaea-like ribonuclease H domain by plant L1 retrotransposons supports modular evolution. PMID:24277848
Linkage, mobility, and selfishness in the MazF family of bacterial toxins: a snapshot of bacterial evolution. PMID:24265503
Molecular cloning and characterization of a P-glycoprotein from the diamondback moth, Plutella xylostella (Lepidoptera: Plutellidae). PMID:24264038
Biosynthesis of vitamins and cofactors in bacterium-harbouring trypanosomatids depends on the symbiotic association as revealed by genomic analyses. PMID:24260300
Database resources of the National Center for Biotechnology Information. PMID:24259429
Overlapping and distinct roles of Aspergillus fumigatus UDP-glucose 4-epimerases in galactose metabolism and the synthesis of galactose-containing cell wall polysaccharides. PMID:24257745
Functional clustering of immunoglobulin superfamily proteins with protein-protein interaction information calibrated hidden Markov model sequence profiles. PMID:24246499
A widespread self-cleaving ribozyme class is revealed by bioinformatics. PMID:24240507
A network of epigenetic regulators guides developmental haematopoiesis in vivo. PMID:24240475
Characterization of Enterococcus faecalis phage IME-EF1 and its endolysin. PMID:24236180
Roles of the linker region of RNA helicase A in HIV-1 RNA metabolism. PMID:24223160
Characterization of novel virulent broad-host-range phages of Xylella fastidiosa and Xanthomonas. PMID:24214944
On the three-finger protein domain fold and CD59-like proteins in Schistosoma mansoni. PMID:24205416
Ovarian dual oxidase (Duox) activity is essential for insect eggshell hardening and waterproofing. PMID:24174530
GTP dysregulation in Bacillus subtilis cells lacking (p)ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes. PMID:24163341
A missense mutation accelerating the gating of the lysosomal Cl-/H+-exchanger ClC-7/Ostm1 causes osteopetrosis with gingival hamartomas in cattle. PMID:24159188
Structural analysis and molecular dynamics simulations of novel δ-endotoxin Cry1Id from Bacillus thuringiensis to pave the way for development of novel fusion proteins against insect pests of crops. PMID:24154610
Proteomic analysis of striatum from MPTP-treated marmosets (Callithrix jacchus) with L-DOPA-induced dyskinesia of differing severity. PMID:24150990
Integrated omics study delineates the dynamics of lipid droplets in Rhodococcus opacus PD630. PMID:24150943
Analysis of the Sam50 translocase of excavate organisms supports evolution of divergent organelles from a common endosymbiotic event. PMID:24147756
Discovery and full genome characterization of two highly divergent simian immunodeficiency viruses infecting black-and-white colobus monkeys (Colobus guereza) in Kibale National Park, Uganda. PMID:24139306
Genome analysis of Pseudoalteromonas flavipulchra JG1 reveals various survival advantages in marine environment. PMID:24131871
Putative megaenzyme DWA1 plays essential roles in drought resistance by regulating stress-induced wax deposition in rice. PMID:24127586
Crystal structure of Bacillus subtilis GabR, an autorepressor and transcriptional activator of gabT. PMID:24127574
A high-throughput screening method to reengineer DNA polymerases for random mutagenesis. PMID:24122281
Melanoma differentiation-associated gene 5 in zebrafish provoking higher interferon-promoter activity through signalling enhancing of its shorter splicing variant. PMID:24116956
Pseudomonas putida AlkA and AlkB proteins comprise different defense systems for the repair of alkylation damage to DNA - in vivo, in vitro, and in silico studies. PMID:24098441
Strategies to discover the structural components of cyst and oocyst walls. PMID:24096907
Maturin is a novel protein required for differentiation during primary neurogenesis. PMID:24095902
In and out: an analysis of epibiotic vs periplasmic bacterial predators. PMID:24088628
LdFlabarin, a new BAR domain membrane protein of Leishmania flagellum. PMID:24086735
DIRS and Ngaro Retrotransposons in Fungi. PMID:24086727
Comparative genomic analysis of multi-subunit tethering complexes demonstrates an ancient pan-eukaryotic complement and sculpting in Apicomplexa. PMID:24086721
Analysis of the Ush2a gene in medaka fish (Oryzias latipes). PMID:24086419
Role of mitofusin 2 (Mfn2) in controlling cellular proliferation. PMID:24081906
Calmodulin-dependent and calmodulin-independent glutamate decarboxylases in apple fruit. PMID:24074460
A structural comparison of lipopolysaccharide biosynthesis loci of Legionella pneumophila serogroup 1 strains. PMID:24069939
Automatic identification of highly conserved family regions and relationships in genome wide datasets including remote protein sequences. PMID:24069417
Comparison of RefSeq protein-coding regions in human and vertebrate genomes. PMID:24063302
Comprehensive transcriptomic study on horse gram (Macrotyloma uniflorum): De novo assembly, functional characterization and comparative analysis in relation to drought stress. PMID:24059455
In silico comparison of genomic regions containing genes coding for enzymes and transcription factors for the phenylpropanoid pathway in Phaseolus vulgaris L. and Glycine max L. Merr. PMID:24046770
Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences. PMID:24036533
The evolution of microRNA pathway protein components in Cnidaria. PMID:24030553
The perils of pathogen discovery: origin of a novel parvovirus-like hybrid genome traced to nucleic acid extraction spin columns. PMID:24027301
Novel determinants of intestinal colonization of Salmonella enterica serotype typhimurium identified in bovine enteric infection. PMID:24019407
Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers. PMID:24015778
Complete Genome Sequence of the Broad-Host-Range Paenibacillus larvae Phage phiIBB_Pl23. PMID:24009112
Identification, expression, and comparative genomic analysis of the IPT and CKX gene families in Chinese cabbage (Brassica rapa ssp. pekinensis). PMID:24001366
Mutations in FBXL4 cause mitochondrial encephalopathy and a disorder of mitochondrial DNA maintenance. PMID:23993193
Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton. PMID:23985748
SHARP: genome-scale identification of gene-protein-reaction associations in cyanobacteria. PMID:23975204
Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria. PMID:23959135
Cellulolytic potential of thermophilic species from four fungal orders. PMID:23958135
A mutation in the serine protease TMPRSS4 in a novel pediatric neurodegenerative disorder. PMID:23957953
Identification and characterization of three novel lipases belonging to families II and V from Anaerovibrio lipolyticus 5ST. PMID:23950883
High-Quality Draft Genome Sequence of Pseudomonas syringae pv. Syringae Strain SM, Isolated from Wheat. PMID:23950121
L-Arabinose degradation pathway in the haloarchaeon Haloferax volcanii involves a novel type of L-arabinose dehydrogenase. PMID:23949136
Functional analyses of a flavonol synthase-like gene from Camellia nitidissima reveal its roles in flavonoid metabolism during floral pigmentation. PMID:23938391
Starch biosynthesis in cassava: a genome-based pathway reconstruction and its exploitation in data integration. PMID:23938102
A network of HMG-box transcription factors regulates sexual cycle in the fungus Podospora anserina. PMID:23935511
Critical analysis of the potential for targeting STAT3 in human malignancy. PMID:23935373
Genome Sequence of Staphylococcus massiliensis Strain S46, Isolated from the Surface of Healthy Human Skin. PMID:23929469
Type IV pilus proteins form an integrated structure extending from the cytoplasm to the outer membrane. PMID:23922942
Analysis of unannotated equine transcripts identified by mRNA sequencing. PMID:23922931
Knockdown of fbxl10/kdm2bb rescues chd7 morphant phenotype in a zebrafish model of CHARGE syndrome. PMID:23920116
Genome-wide analysis of the Populus Hsp90 gene family reveals differential expression patterns, localization, and heat stress responses. PMID:23915275
TraG encoded by the pIP501 type IV secretion system is a two-domain peptidoglycan-degrading enzyme essential for conjugative transfer. PMID:23913323
Phosphorylation of RNA polymerase II is independent of P-TEFb in the C. elegans germline. PMID:23903194
Mobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor. PMID:23900287
The APSES transcription factor Efg1 is a global regulator that controls morphogenesis and biofilm formation in Candida parapsilosis. PMID:23895281
Extracellular proteome analysis of Leptospira interrogans serovar Lai. PMID:23895271
Forward genetics by genome sequencing reveals that rapid cyanide release deters insect herbivory of Sorghum bicolor. PMID:23893483
Genome-wide identification, molecular cloning, expression profiling and posttranscriptional regulation analysis of the Argonaute gene family in Salvia miltiorrhiza, an emerging model medicinal plant. PMID:23889895
Mutants of phage bIL67 RuvC with enhanced Holliday junction binding selectivity and resolution symmetry. PMID:23888987
LIFEGUARD proteins support plant colonization by biotrophic powdery mildew fungi. PMID:23888068
Gene fusion analysis in the battle against the African endemic sleeping sickness. PMID:23874788
Molecular cloning and characterization of juvenile hormone acid methyltransferase in the honey bee, Apis mellifera, and its differential expression during caste differentiation. PMID:23874662
Evolution of the plasma and tissue kallikreins, and their alternative splicing isoforms. PMID:23874499
Characterization of AmiBA2446, a novel bacteriolytic enzyme active against Bacillus species. PMID:23872558
Redox-sensitive DNA binding by homodimeric Methanosarcina acetivorans MsvR is modulated by cysteine residues. PMID:23865844
High levels of DegU-P activate an Esat-6-like secretion system in Bacillus subtilis. PMID:23861817
An alignment-free domain architecture similarity search (ADASS) algorithm for inferring homology between multi-domain proteins. PMID:23861564
Analysis of the Staphylococcus aureus abscess proteome identifies antimicrobial host proteins and bacterial stress responses at the host-pathogen interface. PMID:23847107
Genomics analysis of potassium channel genes in songbirds reveals molecular specializations of brain circuits for the maintenance and production of learned vocalizations. PMID:23845108
Characterization of a Novel Putative S-Adenosylmethionine Decarboxylase-Like Protein from Leishmania donovani. PMID:23840377
Tracing evolutionary footprints to identify novel gene functional linkages. PMID:23825567
Control of cellular Bcl-xL levels by deamidation-regulated degradation. PMID:23823868
Rickettsia typhi possesses phospholipase A2 enzymes that are involved in infection of host cells. PMID:23818842
Discovery and Characterization of a Novel Carlavirus Infecting Potatoes in China. PMID:23805334
Genetic characterization of a novel picornavirus distantly related to the marine mammal-infecting aquamaviruses in a long-distance migrant bird species, European roller (Coracias garrulus). PMID:23804566
Role for ferredoxin:NAD(P)H oxidoreductase (FprA) in sulfate assimilation and siderophore biosynthesis in Pseudomonads. PMID:23794620
Oxidative stress and DNA lesions: the role of 8-oxoguanine lesions in Trypanosoma cruzi cell viability. PMID:23785540
Molecular characterization of tick salivary gland glutaminyl cyclase. PMID:23770496
Molecular phylogeny, homology modeling, and molecular dynamics simulation of race-specific bacterial blight disease resistance protein (xa5) of rice: a comparative agriproteomics approach. PMID:23758479
Peptides modeled on the RGG domain of AUF1/hnRNP-D regulate 3' UTR-dependent gene expression. PMID:23747316
Mutations in DNA-binding loop of NFAT5 transcription factor produce unique outcomes on protein-DNA binding and dynamics. PMID:23734591
Draft genome sequence, and a sequence-defined genetic linkage map of the legume crop species Lupinus angustifolius L. PMID:23734219
Three functional β-carbonic anhydrases in Pseudomonas aeruginosa PAO1: role in survival in ambient air. PMID:23728627
Impaired insulin-stimulated glucose transport in ATM-deficient mouse skeletal muscle. PMID:23724874
Thioredoxin-like proteins in F and other plasmid systems. PMID:23721857
UAS domain of Ubxd8 and FAF1 polymerizes upon interaction with long-chain unsaturated fatty acids. PMID:23720822
Integrative approach reveals composition of endoparasitoid wasp venoms. PMID:23717546
Class A scavenger receptor 1 (MSR1) restricts hepatitis C virus replication by mediating toll-like receptor 3 recognition of viral RNAs produced in neighboring cells. PMID:23717201
Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria. PMID:23716574
Draft Genome Sequence of the Cellulolytic, Mesophilic, Anaerobic Bacterium Clostridium termitidis Strain CT1112 (DSM 5398). PMID:23704187
The Drosophila melanogaster methuselah gene: a novel gene with ancient functions. PMID:23696853
Inferences on the biochemical and environmental regulation of universal stress proteins from Schistosomiasis parasites. PMID:23696708
Redox proteomics uncovers peroxynitrite-sensitive proteins that help Escherichia coli to overcome nitrosative stress. PMID:23696645
Identification of novel protein domains required for the expression of an active dehydratase fragment from a polyunsaturated fatty acid synthase. PMID:23696301
The Arabidopsis RING E3 ubiquitin ligase AtAIRP3/LOG2 participates in positive regulation of high-salt and drought stress responses. PMID:23696092
Partial venom gland transcriptome of a Drosophila parasitoid wasp, Leptopilina heterotoma, reveals novel and shared bioactive profiles with stinging Hymenoptera. PMID:23688557
A divergent P element and its associated MITE, BuT5, generate chromosomal inversions and are widespread within the Drosophila repleta species group. PMID:23682154
Characterization of an M28 metalloprotease family member residing in the yeast vacuole. PMID:23679341
Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage. PMID:23673639
Computational identification and analysis of arsenate reductase protein in Cronobacter sakazakii ATCC BAA-894 suggests potential microorganism for reducing arsenate. PMID:23666632
The hnRNP F/H homologue of Trypanosoma brucei is differentially expressed in the two life cycle stages of the parasite and regulates splicing and mRNA stability. PMID:23666624
Proteolytic processing of the Yersinia pestis YapG autotransporter by the omptin protease Pla and the contribution of YapG to murine plague pathogenesis. PMID:23657527
The wooly mutation (wly) on mouse chromosome 11 is associated with a genetic defect in Fam83g. PMID:23656696
Reconstituting protein interaction networks using parameter-dependent domain-domain interactions. PMID:23651452
Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly. PMID:23638091
Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum. PMID:23617600
MNADK, a novel liver-enriched mitochondrion-localized NAD kinase. PMID:23616928
Crystal structure of the protein from Arabidopsis thaliana gene At5g06450, a putative DnaQ-like exonuclease domain-containing protein with homohexameric assembly. PMID:23616405
Phenotypic heterogeneity of genomically-diverse isolates of Streptococcus mutans. PMID:23613838
Lateral gene transfer of family A DNA polymerases between thermophilic viruses, aquificae, and apicomplexa. PMID:23608703
Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield. PMID:23583977
Assembly of a marine viral metagenome after physical fractionation. PMID:23580170
Reevaluation of the evolutionary events within recA/RAD51 phylogeny. PMID:23574621
Diversity of Fusarium species and mycotoxins contaminating pineapple. PMID:23572446
Differentiation of Bacillus anthracis, B. cereus, and B. thuringiensis on the basis of the csaB gene reflects host source. PMID:23563945
Identification and characterization of a tetramethylpyrazine catabolic pathway in Rhodococcus jostii TMP1. PMID:23563941
CCDC22 deficiency in humans blunts activation of proinflammatory NF-κB signaling. PMID:23563313
Genetic characterization of a novel picornavirus in turkeys (Meleagris gallopavo) distinct from turkey galliviruses and megriviruses and distantly related to the members of the genus Avihepatovirus. PMID:23559479
Whole genome sequence analysis of the first Australian OXA-48-producing outbreak-associated Klebsiella pneumoniae isolates: the resistome and in vivo evolution. PMID:23555831
CovR and VicRK regulate cell surface biogenesis genes required for biofilm formation in Streptococcus mutans. PMID:23554881
Homologues of bacterial TnpB_IS605 are widespread in diverse eukaryotic transposable elements. PMID:23548000
Crystallization and preliminary X-ray diffraction analysis of the secreted protein Athe_0614 from Caldicellulosiruptor bescii. PMID:23545654
Comparative proteomics of chloroplasts envelopes from bundle sheath and mesophyll chloroplasts reveals novel membrane proteins with a possible role in c4-related metabolite fluxes and development. PMID:23543921
Detection and characterization of megasatellites in orthologous and nonorthologous genes of 21 fungal genomes. PMID:23543670
Identification and analysis of the acetylated status of poplar proteins reveals analogous N-terminal protein processing mechanisms with other eukaryotes. PMID:23536812
Ndufaf5 deficiency in the Dictyostelium model: new roles in autophagy and development. PMID:23536703
Potential immunogenic polypeptides of Burkholderia pseudomallei identified by shotgun expression library and evaluation of their efficacy for serodiagnosis of melioidosis. PMID:23532805
A prototypic lysine methyltransferase 4 from archaea with degenerate sequence specificity methylates chromatin proteins Sul7d and Cren7 in different patterns. PMID:23530048
Structure prediction and analysis of DNA transposon and LINE retrotransposon proteins. PMID:23530042
Function-based classification of carbohydrate-active enzymes by recognition of short, conserved peptide motifs. PMID:23524681
Staufen1 dimerizes through a conserved motif and a degenerate dsRNA-binding domain to promote mRNA decay. PMID:23524536
The BEACH is hot: a LYST of emerging roles for BEACH-domain containing proteins in human disease. PMID:23521701
GH1-family 6-P-β-glucosidases from human microbiome lactic acid bacteria. PMID:23519420
Computational analysis of common bean (Phaseolus vulgaris L., genotype BAT93) lycopene β-cyclase and β-carotene hydroxylase gene's cDNA. PMID:23519320
Protein function prediction using domain families. PMID:23514456
Genome sequence of a novel deep-sea vent epsilonproteobacterial phage provides new insight into the co-evolution of Epsilonproteobacteria and their phages. PMID:23512119
Elucidation of the 3-O-deacylase gene, pagL, required for the removal of primary β-hydroxy fatty acid from the lipid A in the nitrogen-fixing endosymbiont Rhizobium etli CE3. PMID:23511636
Human-to-bovine jump of Staphylococcus aureus CC8 is associated with the loss of a β-hemolysin converting prophage and the acquisition of a new staphylococcal cassette chromosome. PMID:23505465
Functional analysis of the Aspergillus nidulans kinome. PMID:23505451
Novel proteins required for meiotic silencing by unpaired DNA and siRNA generation in Neurospora crassa. PMID:23502675
The host-range, genomics and proteomics of Escherichia coli O157:H7 bacteriophage rV5. PMID:23497209
Induction of Glutaredoxin Expression in Response to Desiccation Stress in the Foliar Nematode Aphelenchoides fragariae. PMID:23483835
Discovery of functional toxin/antitoxin systems in bacteria by shotgun cloning. PMID:23478446
Bacterial DNA sifted from the Trichoplax adhaerens (Animalia: Placozoa) genome project reveals a putative rickettsial endosymbiont. PMID:23475938
Cyclic di-GMP: the first 25 years of a universal bacterial second messenger. PMID:23471616
Identification and function of leucine-rich repeat flightless-I-interacting protein 2 (LRRFIP2) in Litopenaeus vannamei. PMID:23468989
The amidation step of diphthamide biosynthesis in yeast requires DPH6, a gene identified through mining the DPH1-DPH5 interaction network. PMID:23468660
Mutualistic co-evolution of type III effector genes in Sinorhizobium fredii and Bradyrhizobium japonicum. PMID:23468637
Clades of γ-glutamyltransferases (GGTs) in the ascomycota and heterologous expression of Colletotrichum graminicola CgGGT1, a member of the pezizomycotina-only GGT clade. PMID:23456716
Evolution of land plant genes encoding L-Ala-D/L-Glu epimerases (AEEs) via horizontal gene transfer and positive selection. PMID:23452519
De novo assembly and characterization of transcriptome using Illumina paired-end sequencing and identification of CesA gene in ramie (Boehmeria nivea L. Gaud). PMID:23442184
Replication of association between schizophrenia and chromosome 6p21-6p22.1 polymorphisms in Chinese Han population. PMID:23437227
Why does a protein's evolutionary rate vary over time? PMID:23436005
The Burkholderia contaminans MS14 ocfC gene encodes a xylosyltransferase for production of the antifungal occidiofungin. PMID:23435879
Multiple Legionella pneumophila Type II secretion substrates, including a novel protein, contribute to differential infection of the amoebae Acanthamoeba castellanii, Hartmannella vermiformis, and Naegleria lovaniensis. PMID:23429532
Silencing of molt-regulating transcription factor gene, CiHR3, affects growth and development of sugarcane stem borer, Chilo infuscatellus. PMID:23427912
Targeting of insect epicuticular lipids by the entomopathogenic fungus Beauveria bassiana: hydrocarbon oxidation within the context of a host-pathogen interaction. PMID:23422735
Mining tertiary structural motifs for assessment of designability. PMID:23422424
Biochemical properties of a novel thermostable and highly xylose-tolerant β-xylosidase/α-arabinosidase from Thermotoga thermarum. PMID:23422003
Bacterial lifestyle shapes stringent response activation. PMID:23419217
A two-component system (XydS/R) controls the expression of genes encoding CBM6-containing proteins in response to straw in Clostridium cellulolyticum. PMID:23418511
Characterization of a novel Rieske-type alkane monooxygenase system in Pusillimonas sp. strain T7-7. PMID:23417490
The origin of 8-amino-3,8-dideoxy-D-manno-octulosonic acid (Kdo8N) in the lipopolysaccharide of Shewanella oneidensis. PMID:23413030
The Eimeria transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria. PMID:23411718
Comparative genomics of chemosensory protein genes reveals rapid evolution and positive selection in ant-specific duplicates. PMID:23403962
Genomic reconstruction of transcriptional regulatory networks in lactic acid bacteria. PMID:23398941
A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes. PMID:23391036
Chaperone-usher fimbriae of Escherichia coli. PMID:23382825
Staphylococcus aureus nuclease is an SaeRS-dependent virulence factor. PMID:23381999
Emerging concepts in the flavinylation of succinate dehydrogenase. PMID:23380393
Genetic determinants for cadmium and arsenic resistance among Listeria monocytogenes serotype 4b isolates from sporadic human listeriosis patients. PMID:23377929
SymGRASS: a database of sugarcane orthologous genes involved in arbuscular mycorrhiza and root nodule symbiosis. PMID:23368899
Molecular tools for the detection of nitrogen cycling Archaea. PMID:23365509
The mitochondrial genome and a 60-kb nuclear DNA segment from Naegleria fowleri, the causative agent of primary amoebic meningoencephalitis. PMID:23360210
Identification and physiological characterization of phosphatidic acid phosphatase enzymes involved in triacylglycerol biosynthesis in Streptomyces coelicolor. PMID:23356794
Regulation of Phosphatidylethanolamine Homeostasis—The Critical Role of CTP:Phosphoethanolamine Cytidylyltransferase (Pcyt2). PMID:23354482
Genome sequence reveals that Pseudomonas fluorescens F113 possesses a large and diverse array of systems for rhizosphere function and host interaction. PMID:23350846
De novo transcriptome sequencing and analysis for Venturia inaequalis, the devastating apple scab pathogen. PMID:23349770
Comparative analysis of the transcriptome in tissues secreting purple and white nacre in the pearl mussel Hyriopsis cumingii. PMID:23341956
The genetic landscape of high-risk neuroblastoma. PMID:23334666
Phenotypic profiling of DPYD variations relevant to 5-fluorouracil sensitivity using real-time cellular analysis and in vitro measurement of enzyme activity. PMID:23328581
De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes. PMID:23326453
Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing. PMID:23324139
A heterozygous moth genome provides insights into herbivory and detoxification. PMID:23313953
Identification and functional demonstration of miRNAs in the fungus Cryptococcus neoformans. PMID:23300755
Complete genome sequence analysis of an American isolate of Grapevine virus E. PMID:23296875
Comparative genomics of odorant binding proteins in Anopheles gambiae, Aedes aegypti, and Culex quinquefasciatus. PMID:23292137
Polygenic molecular architecture underlying non-sexual cell aggregation in budding yeast. PMID:23284084
Elucidation of a novel lipid A α-(1,1)-GalA transferase gene (rgtF) from Mesorhizobium loti: Heterologous expression of rgtF causes Rhizobium etli to synthesize lipid A with α-(1,1)-GalA. PMID:23283001
FastAnnotator--an efficient transcript annotation web tool. PMID:23281853
Analysis of multi-domain hypothetical proteins containing iron-sulphur clusters and fad ligands reveal rieske dioxygenase activity suggesting their plausible roles in bioremediation. PMID:23275712
Isolation and characterization of CaMF3, an anther-specific gene in Capsicum annuum L. PMID:23271943
A tRNA-independent mechanism for transamidosome assembly promotes aminoacyl-tRNA transamidation. PMID:23258533
Mutations in CCDC39 and CCDC40 are the major cause of primary ciliary dyskinesia with axonemal disorganization and absent inner dynein arms. PMID:23255504
Identification of MDP (muramyl dipeptide)-binding key domains in NOD2 (nucleotide-binding and oligomerization domain-2) receptor of Labeo rohita. PMID:23255217
A conjugative 38 kB plasmid is present in multiple subspecies of Xylella fastidiosa. PMID:23251694
Characteristics of a broad lytic spectrum endolysin from phage BtCS33 of Bacillus thuringiensis. PMID:23249212
A link between host plant adaptation and pesticide resistance in the polyphagous spider mite Tetranychus urticae. PMID:23248300
PanG, a new ketopantoate reductase involved in pantothenate synthesis. PMID:23243306
Chromatin is an ancient innovation conserved between Archaea and Eukarya. PMID:23240084
Unique secreted-surface protein complex of Lactobacillus rhamnosus, identified by phage display. PMID:23233310
Functional characterization of two M42 aminopeptidases erroneously annotated as cellulases. PMID:23226342
Functional Annotation Analytics of Bacillus Genomes Reveals Stress Responsive Acetate Utilization and Sulfate Uptake in the Biotechnologically Relevant Bacillus megaterium. PMID:23226010
Evolution of an MCM complex in flies that promotes meiotic crossovers by blocking BLM helicase. PMID:23224558
Orthologous gene clusters and taxon signature genes for viruses of prokaryotes. PMID:23222723
Deficiency of FRAS1-related extracellular matrix 1 (FREM1) causes congenital diaphragmatic hernia in humans and mice. PMID:23221805
Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey. PMID:23220349
Identification of natural and artificial DNA substrates for light-activated LOV-HTH transcription factor EL222. PMID:23205774
CDD: conserved domains and protein three-dimensional structure. PMID:23197659
TIGRFAMs and Genome Properties in 2013. PMID:23197656
Database resources of the National Center for Biotechnology Information. PMID:23193264
The evolution of the class A scavenger receptors. PMID:23181696
Evolution of animal and plant dicers: early parallel duplications and recurrent adaptation of antiviral RNA binding in plants. PMID:23180579
Involvement of Arabidopsis ACYL-COENZYME A DESATURASE-LIKE2 (At2g31360) in the biosynthesis of the very-long-chain monounsaturated fatty acid components of membrane lipids. PMID:23175755
Bioinformatic approaches for functional annotation and pathway inference in metagenomics data. PMID:23175748
Phylogenomic relationships between amylolytic enzymes from 85 strains of fungi. PMID:23166747
Complete genome sequence of Serratia plymuthica bacteriophage ΦMAM1. PMID:23166269
Dynamics of domain coverage of the protein sequence universe. PMID:23157439
Analysis of soluble protein contents from the nematocysts of a model sea anemone sheds light on venom evolution. PMID:23151943
Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania major. PMID:23151081
Re-evaluation of the role of calcium homeostasis endoplasmic reticulum protein (CHERP) in cellular calcium signaling. PMID:23148228
Distribution and diversity of mycoplasma plasmids: lessons from cryptic genetic elements. PMID:23145790
RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways. PMID:23145190
Homology Modeling and Functional Characterization of PR-1a Protein of Hordeum vulgare subsp. Vulgare. PMID:23139589
The stability of the small nucleolar ribonucleoprotein (snoRNP) assembly protein Pih1 in Saccharomyces cerevisiae is modulated by its C terminus. PMID:23139418
ST proteins, a new family of plant tandem repeat proteins with a DUF2775 domain mainly found in Fabaceae and Asteraceae. PMID:23134664
Bacillus thuringiensis metalloproteinase Bmp1 functions as a nematicidal virulence factor. PMID:23124228
Escherichia coli RecG functionally suppresses human Bloom syndrome phenotypes. PMID:23110454
When a domain is not a domain, and why it is important to properly filter proteins in databases: conflicting definitions and fold classification systems for structural domains make filtering of such databases imperative. PMID:23108912
CysQ of Cryptosporidium parvum, a Protozoa, May Have Been Acquired from Bacteria by Horizontal Gene Transfer. PMID:23105923
Genome sequence of Nitratireductor aquibiodomus strain RA22. PMID:23105054
Coevolution and hierarchical interactions of Tomato mosaic virus and the resistance gene Tm-1. PMID:23093939
A new arsenate reductase involved in arsenic detoxification in Anabaena sp. PCC7120. PMID:23086594
Evolution of lanthipeptide synthetases. PMID:23071302
A mutation of the RNA polymerase β' subunit (rpoC) confers cephalosporin resistance in Bacillus subtilis. PMID:23070162
Computational tools for viral metagenomics and their application in clinical research. PMID:23062738
The pectin lyases in Arabidopsis thaliana: evolution, selection and expression profiles. PMID:23056537
A walk into the LuxR regulators of Actinobacteria: phylogenomic distribution and functional diversity. PMID:23056438
Genome of Epinotia aporema granulovirus (EpapGV), a polyorganotropic fast killing betabaculovirus with a novel thymidylate kinase gene. PMID:23051685
Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis. PMID:23050870
Molecular characterization and ligand binding specificity of the PDZ domain-containing protein GIPC3 from Schistosoma japonicum. PMID:23050840
Genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin. PMID:23043000
Roles of the structural symbiosis polysaccharide (syp) genes in host colonization, biofilm formation, and polysaccharide biosynthesis in Vibrio fischeri. PMID:23042998
Distribution of the SELMA translocon in secondary plastids of red algal origin and predicted uncoupling of ubiquitin-dependent translocation from degradation. PMID:23042132
MESSA: MEta-Server for protein Sequence Analysis. PMID:23031578
Crystallization and preliminary X-ray studies of MutT1 (MSMEG_2390) from Mycobacterium smegmatis. PMID:23027750
The atypical short-chain dehydrogenases HCF173 and HCF244 are jointly involved in translational initiation of the psbA mRNA of Arabidopsis. PMID:23027666
β-1,3-glucan, which can be targeted by drugs, forms a trabecular scaffold in the oocyst walls of Toxoplasma and Eimeria. PMID:23015739
In vitro and in vivo analysis of the interaction between RNA helicase A and HIV-1 RNA. PMID:23015696
Bacterial biosynthetic gene clusters encoding the anti-cancer haterumalide class of molecules: biogenesis of the broad spectrum antifungal and anti-oomycete compound, oocydin A. PMID:23012376
Genome sequence of the alkaliphilic bacterium Nitritalea halalkaliphila type strain LW7, isolated from Lonar Lake, India. PMID:23012274
Identification of proteins likely to be involved in morphogenesis, cell division, and signal transduction in Planctomycetes by comparative genomics. PMID:23002222
Complete genome sequence of an astrovirus identified in a domestic rabbit (Oryctolagus cuniculus) with gastroenteritis. PMID:22998755
Complete genome sequences of two Helicobacter pylori bacteriophages isolated from Japanese patients. PMID:22997420
Full-length genome sequence of Ntaya virus. PMID:22996737
Mechanisms that impact microRNA stability in plants. PMID:22995833
Yeast Irc6p is a novel type of conserved clathrin coat accessory factor related to small G proteins. PMID:22993212
Staphylococcal pathogenicity island interference with helper phage reproduction is a paradigm of molecular parasitism. PMID:22991467
Domain organization of the polymerizing mannosyltransferases involved in synthesis of the Escherichia coli O8 and O9a lipopolysaccharide O-antigens. PMID:22989876
Two outer membrane lipoproteins from Histophilus somni are immunogenic in rabbits and sheep and induce protection against bacterial challenge in mice. PMID:22971783
A gene family derived from transposable elements during early angiosperm evolution has reproductive fitness benefits in Arabidopsis thaliana. PMID:22969437
A novel malate dehydrogenase from Ceratonia siliqua L. seeds with potential biotechnological applications. PMID:22965554
Tracing genomic variations in two highly virulent Yersinia enterocolitica strains with unequal ability to compete for host colonization. PMID:22963272
Homology modeling and functional annotation of bubaline pregnancy associated glycoprotein 2. PMID:22958467
Identification of a putative glycosyltransferase responsible for the transfer of pseudaminic acid onto the polar flagellin of Aeromonas caviae Sch3N. PMID:22950021
MUC16/CA125 in the context of modular proteins with an annotated role in adhesion-related processes: in silico analysis. PMID:22949868
Cloning of aquaporin-1 of the blue crab, Callinectes sapidus: its expression during the larval development in hyposalinity. PMID:22943628
Evolution of selenoproteins in the metazoan. PMID:22943432
S-bacillithiolation protects conserved and essential proteins against hypochlorite stress in firmicutes bacteria. PMID:22938038
Basal vertebrates clarify the evolutionary history of ciliopathy-associated genes Tmem138 and Tmem216. PMID:22936720
Comparative genomics guided discovery of two missing archaeal enzyme families involved in the biosynthesis of the pterin moiety of tetrahydromethanopterin and tetrahydrofolate. PMID:22931285
Virtual interactomics of proteins from biochemical standpoint. PMID:22928109
The Yfe and Feo transporters are involved in microaerobic growth and virulence of Yersinia pestis in bubonic plague. PMID:22927049
HSPIR: a manually annotated heat shock protein information resource. PMID:22923302
High yield expression of catalytically active USP18 (UBP43) using a Trigger Factor fusion system. PMID:22916876
One for all or all for one: heterogeneous expression and host cell lysis are key to gene transfer agent activity in Rhodobacter capsulatus. PMID:22916305
NOL11, implicated in the pathogenesis of North American Indian childhood cirrhosis, is required for pre-rRNA transcription and processing. PMID:22916032
Conservation of gene cassettes among diverse viruses of the human gut. PMID:22900013
Evolution of SH2 domains and phosphotyrosine signalling networks. PMID:22889907
A nitrogen-regulated glutamine amidotransferase (GAT1_2.1) represses shoot branching in Arabidopsis. PMID:22885937
Novel Podoviridae family bacteriophage infecting Weissella cibaria isolated from Kimchi. PMID:22885743
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes. PMID:22882546
Molecular characterization of pathogenic members of the genus Fonsecaea using multilocus analysis. PMID:22876287
Biosynthesis of the polymannose lipopolysaccharide O-antigens from Escherichia coli serotypes O8 and O9a requires a unique combination of single- and multiple-active site mannosyltransferases. PMID:22875852
Identification and complete genome characterization of a novel picornavirus in turkey (Meleagris gallopavo). PMID:22875254
Genetic characterization of Erve virus, a European Nairovirus distantly related to Crimean-Congo hemorrhagic fever virus. PMID:22864548
Two different secondary metabolism gene clusters occupied the same ancestral locus in fungal dermatophytes of the arthrodermataceae. PMID:22860027
A comparative analysis of proteins that accumulate during the initial stage of root hair development in barley root hair mutants and their parent varieties. PMID:22847350
Complete genome sequence of Croceibacter bacteriophage P2559S. PMID:22843867
Complete genome sequence of Marinomonas bacteriophage P12026. PMID:22843865
Isolation and functional characterisation of banana phytoene synthase genes as potential cisgenes. PMID:22843244
Fast isogenic mapping-by-sequencing of ethyl methanesulfonate-induced mutant bulks. PMID:22837357
The NsrR regulon in nitrosative stress resistance of Salmonella enterica serovar Typhimurium. PMID:22831173
Chemotaxis of Marinobacter adhaerens and its impact on attachment to the diatom Thalassiosira weissflogii. PMID:22820333
Predictive sequence analysis of the Candidatus Liberibacter asiaticus proteome. PMID:22815919
Metabolic potential of a single cell belonging to one of the most abundant lineages in freshwater bacterioplankton. PMID:22810059
Identification of a novel calcium binding motif based on the detection of sequence insertions in the animal peroxidase domain of bacterial proteins. PMID:22808235
Cross-Genome Clustering of Human and C. elegans G-Protein Coupled Receptors. PMID:22807621
The ABC transporters in Candidatus Liberibacter asiaticus. PMID:22807026
Cloning, purification and characterization of an alkali-stable endoxylanase from thermophilic Geobacillus sp. 71. PMID:22806019
Evolution and virulence contributions of the autotransporter proteins YapJ and YapK of Yersinia pestis CO92 and their homologs in Y. pseudotuberculosis IP32953. PMID:22802344
Insights into Lantibiotic Immunity Provided by Bioengineering of LtnI. PMID:22802258
Vitamin B(12) synthesis and salvage pathways were acquired by horizontal gene transfer to the Thermotogales. PMID:22798452
Characterization of a Leuconostoc bacteriophage infecting flavor producers of cheese starter cultures. PMID:22798359
Role of RelA and SpoT in Burkholderia pseudomallei virulence and immunity. PMID:22778096
Local and systemic changes in expression of resistance genes, NB-LRR genes and their putative microRNAs in Norway spruce after wounding and inoculation with the pathogen Ceratocystis polonica. PMID:22776433
Comparative analysis of diguanylate cyclase and phosphodiesterase genes in Klebsiella pneumoniae. PMID:22776320
TolC-dependent secretion of an ankyrin repeat-containing protein of Rickettsia typhi. PMID:22773786
Substrate specificity of mammalian N-terminal α-amino methyltransferase NRMT. PMID:22769851
A major facilitator superfamily protein, HepP, is involved in formation of the heterocyst envelope polysaccharide in the cyanobacterium Anabaena sp. strain PCC 7120. PMID:22753066
Identification and characterization of myophilin-like protein: a life stage and tissue-specific antigen of Clonorchis sinensis. PMID:22752695
Evolution of the RALF Gene Family in Plants: Gene Duplication and Selection Patterns. PMID:22745530
Identification of MW polyomavirus, a novel polyomavirus in human stool. PMID:22740408
The Bin3 RNA methyltransferase targets 7SK RNA to control transcription and translation. PMID:22740346
Fungal genome resources at NCBI. PMID:22737589
Complete genome sequence of Cronobacter sakazakii temperate bacteriophage phiES15. PMID:22733879
CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome. PMID:22732228
Public domain databases for medicinal chemistry. PMID:22731701
RefZ facilitates the switch from medial to polar division during spore formation in Bacillus subtilis. PMID:22730127
Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures. PMID:22726767
MspA nanopores from subunit dimers. PMID:22719928
Substrate-specific transcription of the enigmatic GH61 family of the pathogenic white-rot fungus Heterobasidion irregulare during growth on lignocellulose. PMID:22718248
A Phylogenetic analysis of Heparanase (HPSE) gene. PMID:22715311
Borrelia burgdorferi harbors a transport system essential for purine salvage and mammalian infection. PMID:22710875
Structure and proposed mechanism for the pH-sensing Helicobacter pylori chemoreceptor TlpB. PMID:22705207
Strongyloides stercoralis age-1: a potential regulator of infective larval development in a parasitic nematode. PMID:22701676
Life beyond kinases: structure-based discovery of sorafenib as nanomolar antagonist of 5-HT receptors. PMID:22694093
Crystal structures of the outer membrane domain of intimin and invasin from enterohemorrhagic E. coli and enteropathogenic Y. pseudotuberculosis. PMID:22658748
Reactive oxygen species-mediated immunity against Leishmania mexicana and Serratia marcescens in the sand phlebotomine fly Lutzomyia longipalpis. PMID:22645126
A multi-faceted analysis of RutD reveals a novel family of α/β hydrolases. PMID:22641504
ILF-3 is a regulator of the neural plate border marker Zic1 in chick embryos. PMID:22639388
MS_RHII-RSD, a dual-function RNase HII-(p)ppGpp synthetase from Mycobacterium smegmatis. PMID:22636779
FdhTU-modulated formate dehydrogenase expression and electron donor availability enhance recovery of Campylobacter jejuni following host cell infection. PMID:22636777
Role of Fig1, a component of the low-affinity calcium uptake system, in growth and sexual development of filamentous fungi. PMID:22635922
A unique regulator contributes to quorum sensing and virulence in Burkholderia cenocepacia. PMID:22624054
Identification and functional analysis of the S-layer protein SplA of Paenibacillus larvae, the causative agent of American Foulbrood of honey bees. PMID:22615573
STM2209-STM2208 (opvAB): a phase variation locus of Salmonella enterica involved in control of O-antigen chain length. PMID:22606300
A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules. PMID:22587634
Amino acid substitutions in the N-terminus, cord and α-helix domains improved the thermostability of a family 11 xylanase XynR8. PMID:22584821
Perspectives in PDK1 evolution: insights from photosynthetic and non-photosynthetic organisms. PMID:22580698
Biophysical and structural characterization of a sequence-diverse set of solute-binding proteins for aromatic compounds. PMID:22577139
The Rac GTP exchange factor TIAM-1 acts with CDC-42 and the guidance receptor UNC-40/DCC in neuronal protrusion and axon guidance. PMID:22570618
Complete genome sequence of the giant Pseudomonas phage Lu11. PMID:22570243
Characterization of inflorescence-predominant chitinase gene in Metroxylon sagu via differential display. PMID:22558533
Characterization of a novel ArsR-like regulator encoded by Rv2034 in Mycobacterium tuberculosis. PMID:22558408
Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome. PMID:22555619
Bacterial toxin-antitoxin systems: Translation inhibitors everywhere. PMID:22545240
MexT functions as a redox-responsive regulator modulating disulfide stress resistance in Pseudomonas aeruginosa. PMID:22544265
A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons. PMID:22544262
Impact of malic enzymes on antibiotic and triacylglycerol production in Streptomyces coelicolor. PMID:22544242
Metabolic classification of microbial genomes using functional probes. PMID:22537274
Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia. PMID:22536372
The Physalis peruviana leaf transcriptome: assembly, annotation and gene model prediction. PMID:22533342
Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient. PMID:22524407
PHYRN: a robust method for phylogenetic analysis of highly divergent sequences. PMID:22514627
Computational analysis predicts the Kaposi's sarcoma-associated herpesvirus tegument protein ORF63 to be alpha helical. PMID:22513832
Domain enhanced lookup time accelerated BLAST. PMID:22510480
Type VI secretion system-associated gene clusters contribute to pathogenesis of Salmonella enterica serovar Typhimurium. PMID:22493086
Amylases without known homologues discovered in an acid mine drainage: significance and impact. PMID:22482035
A predicted geranylgeranyl reductase reduces the ω-position isoprene of dolichol phosphate in the halophilic archaeon, Haloferax volcanii. PMID:22469971
Role of Aspergillus niger acrA in arsenic resistance and its use as the basis for an arsenic biosensor. PMID:22467499
De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments. PMID:22462805
Regulation of plasmodesmatal permeability and stomatal patterning by the glycosyltransferase-like protein KOBITO1. PMID:22457425
Role of trehalose in salinity and temperature tolerance in the model halophilic bacterium Chromohalobacter salexigens. PMID:22448254
The protein expression landscape of the Arabidopsis root. PMID:22447775
Annotation of functional sites with the Conserved Domain Database. PMID:22434827
Membrane topology and predicted RNA-binding function of the 'early responsive to dehydration (ERD4)' plant protein. PMID:22431979
Population genomics of resource exploitation: insights from gene expression profiles of two Daphnia ecotypes fed alternate resources. PMID:22423327
Plasmid pP62BP1 isolated from an Arctic Psychrobacter sp. strain carries two highly homologous type II restriction-modification systems and a putative organic sulfate metabolism operon. PMID:22392282
TprC/D (Tp0117/131), a trimeric, pore-forming rare outer membrane protein of Treponema pallidum, has a bipartite domain structure. PMID:22389487
A phylogenetic analysis of the globins in fungi. PMID:22384087
Identification of novel positive-strand RNA viruses by metagenomic analysis of archaea-dominated Yellowstone hot springs. PMID:22379100
Feminizing Wolbachia: a transcriptomics approach with insights on the immune response genes in Armadillidium vulgare. PMID:22375708
Interaction of HmC1q with leech microglial cells: involvement of C1qBP-related molecule in the induction of cell chemotaxis. PMID:22356764
Homology modeling, comparative genomics and functional annotation of Mycoplasma genitalium hypothetical protein MG_237. PMID:22355225
Alp, an arthropod-associated outer membrane protein of Borrelia species that cause relapsing fever. PMID:22354035
RNA interference of NADPH-cytochrome P450 reductase results in reduced insecticide resistance in the bed bug, Cimex lectularius. PMID:22347424
Functional cell surface display and controlled secretion of diverse Agarolytic enzymes by Escherichia coli with a novel ligation-independent cloning vector based on the autotransporter YfaL. PMID:22344647
Identification of the cglC, cglD, cglE, and cglF genes and their role in cell contact-dependent gliding motility in Myxococcus xanthus. PMID:22343295
Molecular structure and function of the novel BrnT/BrnA toxin-antitoxin system of Brucella abortus. PMID:22334680
Recombinant protein expression in Pichia pastoris strains with an engineered methanol utilization pathway. PMID:22330134
Complete genome sequence of the thermophilic bacterium Thermus sp. strain CCB_US3_UF1. PMID:22328745
Complete genome sequence of the thermophilic bacterium Geobacillus thermoleovorans CCB_US3_UF5. PMID:22328744
Two novel type II restriction-modification systems occupying genomically equivalent locations on the chromosomes of Listeria monocytogenes strains. PMID:22327591
Evidence of an evolutionarily conserved LMBR1 domain-containing protein that associates with endocytic cups and plays a role in cell migration in dictyostelium discoideum. PMID:22307974
NAD(P)+-malic enzyme mutants of Sinorhizobium sp. strain NGR234, but not Azorhizobium caulinodans ORS571, maintain symbiotic N2 fixation capabilities. PMID:22307295
Structural, bioinformatic, and in vivo analyses of two Treponema pallidum lipoproteins reveal a unique TRAP transporter. PMID:22306465
Identification of avian wax synthases. PMID:22305293
Homology inference of protein-protein interactions via conserved binding sites. PMID:22303436
Metaproteogenomic analysis of a community of sponge symbionts. PMID:22297557
Gene alterations at Drosophila inversion breakpoints provide prima facie evidence for natural selection as an explanation for rapid chromosomal evolution. PMID:22296923
The National Institutes of Health Undiagnosed Diseases Program: insights into rare diseases. PMID:22237431
Possible import routes of proteins into the cyanobacterial endosymbionts/plastids of Paulinella chromatophora. PMID:22209953
Bioinformatic characterization of the 4-Toluene Sulfonate Uptake Permease (TSUP) family of transmembrane proteins. PMID:22192777
Role for cheR of Vibrio fischeri in the Vibrio-squid symbiosis. PMID:22182211
Small heat shock proteins and α-crystallins: dynamic proteins with flexible functions. PMID:22177323
Candida albicans Dicer (CaDcr1) is required for efficient ribosomal and spliceosomal RNA maturation. PMID:22173636
Molecular characterisation of RIG-I-like helicases in the black flying fox, Pteropus alecto. PMID:22166340
Multifunctional acyltransferases from Tetrahymena thermophila. PMID:22160552
Fatty acyl-CoA reductases of birds. PMID:22151413
Phenotypic variation and host interactions of Xenorhabdus bovienii SS-2004, the entomopathogenic symbiont of Steinernema jollieti nematodes. PMID:22151385
A machine learning approach to identify hydrogenosomal proteins in Trichomonas vaginalis. PMID:22140228
Database resources of the National Center for Biotechnology Information. PMID:22140104
Atypical Listeria monocytogenes serotype 4b strains harboring a lineage II-specific gene cassette. PMID:22138999
MMDB: 3D structures and macromolecular interactions. PMID:22135289
ProtoNet 6.0: organizing 10 million protein sequences in a compact hierarchical family tree. PMID:22121228
NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy. PMID:22121212
Androglobin: a chimeric globin in metazoans that is preferentially expressed in Mammalian testes. PMID:22115833
Characterization of galacturonosyl transferase genes rgtA, rgtB, rgtC, rgtD, and rgtE responsible for lipopolysaccharide synthesis in nitrogen-fixing endosymbiont Rhizobium leguminosarum: lipopolysaccharide core and lipid galacturonosyl residues confer membrane stability. PMID:22110131
Displacement of the canonical single-stranded DNA-binding protein in the Thermoproteales. PMID:22106294
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins. PMID:22102591
Salivaricin D, a novel intrinsically trypsin-resistant lantibiotic from Streptococcus salivarius 5M6c isolated from a healthy infant. PMID:22101034
Origins and evolution of the HET-s prion-forming protein: searching for other amyloid-forming solenoids. PMID:22096554
Yeast sterol regulatory element-binding protein (SREBP) cleavage requires Cdc48 and Dsc5, a ubiquitin regulatory X domain-containing subunit of the Golgi Dsc E3 ligase. PMID:22086920
Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli. PMID:22081385
The UCSC Archaeal Genome Browser: 2012 update. PMID:22080555
YhiQ is RsmJ, the methyltransferase responsible for methylation of G1516 in 16S rRNA of E. coli. PMID:22079366
Random inducible controlled expression (RICE) for identification of mycobacterial virulence genes. PMID:22079212
Expression of chemosensory proteins in the tsetse fly Glossina morsitans morsitans is related to female host-seeking behaviour. PMID:22074189
Divergence and convergence in enzyme evolution. PMID:22069324
IDEAL: Intrinsically Disordered proteins with Extensive Annotations and Literature. PMID:22067451
EcoliWiki: a wiki-based community resource for Escherichia coli. PMID:22064863
Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. PMID:22053731
DNA ligase III: a spotty presence in eukaryotes, but an essential function where tested. PMID:22041657
GyDB mobilomics: LTR retroelements and integrase-related transposons of the pea aphid Acyrthosiphon pisum genome. PMID:22016855
A frameshift mutation in LRSAM1 is responsible for a dominant hereditary polyneuropathy. PMID:22012984
Terminal uridyltransferase enzyme Zcchc11 promotes cell proliferation independent of its uridyltransferase activity. PMID:22006926
A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria. PMID:21987634
A novel metal transporter mediating manganese export (MntX) regulates the Mn to Fe intracellular ratio and Neisseria meningitidis virulence. PMID:21980287
Comparative genomics study of multi-drug-resistance mechanisms in the antibiotic-resistant Streptococcus suis R61 strain. PMID:21966396
Integration of sequence-similarity and functional association information can overcome intrinsic problems in orthology mapping across bacterial genomes. PMID:21965536
3DSwap: curated knowledgebase of proteins involved in 3D domain swapping. PMID:21959866
Genome sequence of the Mycobacterium colombiense type strain, CECT 3035. PMID:21952541
Identification of essential subunits in the plastid-encoded RNA polymerase complex reveals building blocks for proper plastid development. PMID:21949211
Role of Sphingomonas sp. strain Fr1 PhyR-NepR-σEcfG cascade in general stress response and identification of a negative regulator of PhyR. PMID:21949070
Analyses of the oligopeptide transporter gene family in poplar and grape. PMID:21943393
The Roles of the Methyl-CpG Binding Proteins in Cancer. PMID:21941618
A molecular insight into algal-oomycete warfare: cDNA analysis of Ectocarpus siliculosus infected with the basal oomycete Eurychasma dicksonii. PMID:21935414
Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development. PMID:21931557
Molecular characterization of UpaB and UpaC, two new autotransporter proteins of uropathogenic Escherichia coli CFT073. PMID:21930758
Characterization and tissue-specific expression patterns of the Plasmodium chabaudi cir multigene family. PMID:21929749
Two large, related, cryptic plasmids from geographically distinct isolates of Sulfobacillus thermotolerans. PMID:21926204
Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees. PMID:21923906
Phosphorylcholine Phosphatase: A Peculiar Enzyme of Pseudomonas aeruginosa. PMID:21915373
Mycobacterium tuberculosis Rv0899 defines a family of membrane proteins widespread in nitrogen-fixing bacteria. PMID:21905117
A combined functional and structural genomics approach identified an EST-SSR marker with complete linkage to the Ligon lintless-2 genetic locus in cotton (Gossypium hirsutum L.). PMID:21902843
Insight from the draft genome of Dietzia cinnamea P4 reveals mechanisms of survival in complex tropical soil habitats and biotechnology potential. PMID:21901521
A New Family of Biuret Hydrolases Involved in S-Triazine Ring Metabolism. PMID:21897878
Transcriptomic analysis of the zebrafish inner ear points to growth hormone mediated regeneration following acoustic trauma. PMID:21888654
TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data. PMID:21886867
Atg8: an autophagy-related ubiquitin-like protein family. PMID:21867568
Non-erythroid beta spectrin interacting proteins and their effects on spectrin tetramerization. PMID:21866423
Steroid receptor coactivator 2 modulates steroid-dependent male sexual behavior and neuroplasticity in Japanese quail (Coturnix japonica). PMID:21854393
Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling. PMID:21853248
Identification and phylogenetic analysis of heme synthesis genes in trypanosomatids and their bacterial endosymbionts. PMID:21853145
BLProt: prediction of bioluminescent proteins based on support vector machine and relieff feature selection. PMID:21849049
Multiple independent fusions of glucose-6-phosphate dehydrogenase with enzymes in the pentose phosphate pathway. PMID:21829610
Filifactor alocis has virulence attributes that can enhance its persistence under oxidative stress conditions and mediate invasion of epithelial cells by porphyromonas gingivalis. PMID:21825062
Cloning and characterization of a 2-cys peroxiredoxin in the pine wood nematode, Bursaphelenchus xylophilus, a putative genetic factor facilitating the infestation. PMID:21814479
Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors. PMID:21801446
Genome mining demonstrates the widespread occurrence of gene clusters encoding bacteriocins in cyanobacteria. PMID:21799841
The cytosolic kinases STY8, STY17, and STY46 are involved in chloroplast differentiation in Arabidopsis. PMID:21799034
A bHLH transcription factor, DvIVS, is involved in regulation of anthocyanin synthesis in dahlia (Dahlia variabilis). PMID:21765172
Bocavirus episome in infected human tissue contains non-identical termini. PMID:21738642
The Bradyrhizobium japonicum frcB gene encodes a diheme ferric reductase. PMID:21705608
Biochemical and mutational studies of the Bacillus cereus CECT 5050T formamidase support the existence of a C-E-E-K tetrad in several members of the nitrilase superfamily. PMID:21705545
Functions of the Snf2/Swi2 family Rad54 motor protein in homologous recombination. PMID:21704205
SA-Mot: a web server for the identification of motifs of interest extracted from protein loops. PMID:21665924
Spag16, an axonemal central apparatus gene, encodes a male germ cell nuclear speckle protein that regulates SPAG16 mRNA expression. PMID:21655194
Comparative genomics of four closely related Clostridium perfringens bacteriophages reveals variable evolution among core genes with therapeutic potential. PMID:21631945
Transcriptomic analysis of the clam Meretrix meretrix on different larval stages. PMID:21603879
Complete genome sequence of Gallibacterium anatis strain UMN179, isolated from a laying hen with peritonitis. PMID:21602325
A novel zinc binding system, ZevAB, is critical for survival of nontypeable Haemophilus influenzae in a murine lung infection model. PMID:21576338
Using next generation transcriptome sequencing to predict an ectomycorrhizal metabolome. PMID:21569493
Individual variability in the detoxification of carcinogenic arylhydroxylamines in human breast. PMID:21447608
Involvement of a minimal actin-binding region of Spiroplasma citri phosphoglycerate kinase in spiroplasma transmission by its leafhopper vector. PMID:21364953
CDD: NCBI's conserved domain database PubMed citations: 1405.

1405 articles citing: CDD: NCBI's conserved domain database

Genome-Wide Identification and Analysis of the Heat-Shock Protein Gene Superfamily in Bemisia tabaci and Expression Pattern Analysis under Heat Shock. PMID:35886746
Genome-wide analysis and identification of the PEBP genes of Brassica juncea var. Tumida. PMID:35870881
In silico structural and functional characterization of Antheraea mylitta cocoonase. PMID:35816268
Transcriptomic and Phenomic Investigations Reveal Elements in Biofilm Repression and Formation in the Cyanobacterium Synechococcus elongatus PCC 7942. PMID:35814646
Genome-Wide Study of Hsp90 Gene Family in Cabbage (Brassica oleracea var. capitata L.) and Their Imperative Roles in Response to Cold Stress. PMID:35812899
Noncatalytic Domains in DNA Glycosylases. PMID:35806289
Mutational Analysis of Vibrio fischeri c-di-GMP-Modulating Genes Reveals Complex Regulation of Motility. PMID:35758751
Genome Sequence of CaiB, a DR Cluster Actinobacteriophage That Infects Gordonia rubripertincta. PMID:35758688
Discovery and Genomic Function of a Novel Rice Dwarf-Associated Bunya-like Virus. PMID:35746655
Characterization of Phages YuuY, KaiHaiDragon, and OneinaGillian Isolated from Microbacterium foliorum. PMID:35743053
Genome-Wide Analysis of Genes Involved in the GA Signal Transduction Pathway in 'duli' Pear (Pyrus betulifolia Bunge). PMID:35743013
SIN-3 functions through multi-protein interaction to regulate apoptosis, autophagy, and longevity in Caenorhabditis elegans. PMID:35732652
Exploring the Structural and Functional Effects of Nonsynonymous SNPs in the Human Serotonin Transporter Gene Through In Silico Approaches. PMID:35706533
Comprehensive molecular evaluation of the histone methyltransferase gene family and their important roles in two-line hybrid wheat. PMID:35698040
Long-Read Metagenomics Improves the Recovery of Viral Diversity from Complex Natural Marine Samples. PMID:35695508
CoeViz 2: Protein Graphs Derived from Amino Acid Covariance. PMID:35694032
Functional Characterization of Soybean Diacylglycerol Acyltransferase 3 in Yeast and Soybean. PMID:35693158
Conservation and Divergence of Phosphoenolpyruvate Carboxylase Gene Family in Cotton. PMID:35684256
Genome-wide identification and expression analysis of the R2R3-MYB gene family in tobacco (Nicotiana tabacum L.). PMID:35681121
Identification of TCP family in moso bamboo (Phyllostachys edulis) and salt tolerance analysis of PheTCP9 in transgenic Arabidopsis. PMID:35670871
Structural and biophysical characterization of the multidomain xylanase Xyl. PMID:35657930
Closing the Gap: Horizontal Transfer of Mariner Transposons between Rhus Gall Aphids and Other Insects. PMID:35625459
Identification and Characterization of Antioxidant Enzyme Genes in Parasitoid Aphelinus asychis (Hymenoptera: Aphelinidae) and Expression Profiling Analysis under Temperature Stress. PMID:35621782
A regulatory linkage between scytonemin production and hormogonia differentiation in Nostoc punctiforme. PMID:35620423
Allelic Variation in Zmfatb Gene Defines Variability for Fatty Acids Composition Among Diverse Maize Genotypes. PMID:35600823
Activation of Xist by an evolutionarily conserved function of KDM5C demethylase. PMID:35545632
In silico functional and tumor suppressor role of hypothetical protein PCNXL2 with regulation of the Notch signaling pathway. PMID:35539910
Isolation and Annotation of the Genome Sequences of Bacteriophages InvictusManeo (Subcluster K5) and Netyap (Subcluster L2). PMID:35536032
Understanding Diversity, Evolution, and Structure of Small Heat Shock Proteins in Annelida Through in Silico Analyses. PMID:35530508
Exogenous Production of N-acetylmuramyl-L Alanine Amidase (LysM2) from Siphoviridae Phage Affecting Anti-Gram-Negative Bacteria: Evaluation of Its Structure and Function. PMID:35509364
Discovery of two distinct aminoacyl-tRNA synthetase complexes anchored to the Plasmodium surface tRNA import protein. PMID:35487244
The differential expression of PilY1 proteins by the HsfBA phosphorelay allows twitching motility in the absence of exopolysaccharides. PMID:35486648
Genome-wide identification, classification and expression analysis of the JmjC domain-containing histone demethylase gene family in Jatropha curcas L. PMID:35449230
Structural and Evolutionary Adaptations of Nei-Like DNA Glycosylases Proteins Involved in Base Excision Repair of Oxidative DNA Damage in Vertebrates. PMID:35419164
A New Pathologic KMT2B Variant Associated with Childhood Onset Dystonia Presenting as Variable Phenotypes among Family Members. PMID:35415007
Genome-wide analysis of the VQ motif-containing gene family and expression profiles during phytohormones and abiotic stresses in wheat (Triticum aestivum L.). PMID:35410124
Identification of Putative Vaccine and Drug Targets against the Methicillin-Resistant Staphylococcus aureus by Reverse Vaccinology and Subtractive Genomics Approaches. PMID:35408485
Origin and Evolution of the Multifaceted Adherens Junction Component Plekha7. PMID:35399503
Recombinant expression and biophysical characterization of Mrt4 protein that involved in mRNA turnover and ribosome assembly from Saccharomyces cerevisiae. PMID:35387555
The structural diversity of CACTA transposons in genomes of Chenopodium (Amaranthaceae, Caryophyllales) species: specific traits and comparison with the similar elements of angiosperms. PMID:35379321
Tracing back variations in archaeal ESCRT-based cell division to protein domain architectures. PMID:35358274
Microbial communities of Auka hydrothermal sediments shed light on vent biogeography and the evolutionary history of thermophily. PMID:35352015
The Genome of Rhyzopertha dominica (Fab.) (Coleoptera: Bostrichidae): Adaptation for Success. PMID:35328000
Compound Heterozygous Variants in a Surviving Patient With Alkuraya-Kučinskas Syndrome: A New Case Report and a Review of the Literature. PMID:35311058
Comparative Genomics Reveals Evolutionary Traits, Mating Strategies, and Pathogenicity-Related Genes Variation of Botryosphaeriaceae. PMID:35283828
Mycobacterium tuberculosis Rv0309 Dampens the Inflammatory Response and Enhances Mycobacterial Survival. PMID:35281073
DBHR: a collection of databases relevant to human research. PMID:35251694
Genomic Analysis of Molecular Bacterial Mechanisms of Resistance to Phage Infection. PMID:35250902
Unheeded SARS-CoV-2 proteins? A deep look into negative-sense RNA. PMID:35229157
PRDM9 losses in vertebrates are coupled to those of paralogs ZCWPW1 and ZCWPW2. PMID:35217607
Whole Genome Analysis of 335 New Bacterial Species from Human Microbiota Reveals a Huge Reservoir of Transferable Antibiotic Resistance Determinants. PMID:35216256
Virome Analysis Reveals Diverse and Divergent RNA Viruses in Wild Insect Pollinators in Beijing, China. PMID:35215821
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi. PMID:35212484
Dataset of genome sequence, de novo assembly, and functional annotation of Ruegeria sp. (PBVC088), a marine bacterium associated with the toxin-producing harmful dinoflagellate, Pyrodinium bahamense var. compressum. PMID:35198665
Genome-wide comparative analysis of DNAJ genes and their co-expression patterns with HSP70s in aestivation of the sea cucumber Apostichopus japonicus. PMID:35195842
Identification and Expression Analysis of the Populus trichocarpa GASA-Gene Family. PMID:35163431
Phylogenetic and Expression Analysis of CENH3 and APOLLO Genes in Sexual and Apomictic Boechera Species. PMID:35161368
Molecular cloning, characterization and expression analysis of two 12-oxophytodienoate reductases (NtOPR1 and NtOPR2) from Nicotiana tabacum. PMID:35149935
PlantGF: an analysis and annotation platform for plant gene families. PMID:35134149
Molecular and genetic markers in hepatocellular carcinoma: In silico analysis to clinical validation (current limitations and future promises). PMID:35116176
Genome-Wide Diversity of MADS-Box Genes in Bread Wheat is Associated with its Rapid Global Adaptability. PMID:35111207
Probiotic Properties of Bifidobacterium longum KABP042 and Pediococcus pentosaceus KABP041 Show Potential to Counteract Functional Gastrointestinal Disorders in an Observational Pilot Trial in Infants. PMID:35095783
Computational design of a cutinase for plastic biodegradation by mining molecular dynamics simulations trajectories. PMID:35070168
Comparative Analysis of Three Trypanosomatid Catalases of Different Origin. PMID:35052550
Functional analysis of ADARs in planarians supports a bilaterian ancestral role in suppressing double-stranded RNA-response. PMID:35041722
Genome-wide identification and characterization of the CLASP_N gene family in upland cotton (Gossypium hirsutum L.). PMID:35036102
Genomic characterization of ZIP genes in pigeonpea (CcZIP) and their expression analysis among the genotypes with contrasting host response to pod borer. PMID:35035136
Pathogen resistance in Sphagneticola trilobata (Singapore daisy): molecular associations and differentially expressed genes in response to disease from a widespread fungus. PMID:35031940
Novel Cluster AZ Arthrobacter phages Powerpuff, Lego, and YesChef exhibit close functional relationships with Microbacterium phages. PMID:35025964
Distribution and Evolutionary History of Sialic Acid Catabolism in the Phylum Actinobacteria. PMID:35019771
The C. elegans mapping locus rol-9 is encoded by a gain-of-function mutation in mlt-11. PMID:35005481
The cnidarian parasite Ceratonova shasta utilizes inherited and recruited venom-like compounds during infection. PMID:35003924
Integrative clinical and molecular characterization of translocation renal cell carcinoma. PMID:34986355
New insights into the evolution of SPX gene family from algae to legumes; a focus on soybean. PMID:34969367
Extensive loss of Wnt genes in Tardigrada. PMID:34961481
Whole Genome Sequencing of First Janibacter indicus Isolate in China Revealed Three Unique Genomic Islands Compared with Saprophytic Strains. PMID:34934330
High natural PHA production from acetate in Cobetia sp. MC34 and Cobetia marina DSM 4741T and in silico analyses of the genus specific PhaC2 polymerase variant. PMID:34930259
Phylogenetic Analysis of the Membrane Attack Complex/Perforin Domain-Containing Proteins in Gossypium and the Role of GhMACPF26 in Cotton Under Cold Stress. PMID:34868097
The Birth-and-Death Evolution of Cytochrome P450 Genes in Bees. PMID:34850870
Phylogenetic relationships and codon usage bias amongst cluster K mycobacteriophages. PMID:34849792
The Cymbidium genome reveals the evolution of unique morphological traits. PMID:34848682
Nitrogen-Doped Carbon Dots for Selective and Rapid Gene Detection of Human Papillomavirus Causing Cervical Cancer. PMID:34841146
Characterization of Komagataeibacter Isolate Reveals New Prospects in Waste Stream Valorization for Bacterial Cellulose Production. PMID:34835356
Comprehensive Comparative Analysis of the GATA Transcription Factors in Four Rosaceae Species and Phytohormonal Response in Chinese Pear (Pyrus bretschneideri) Fruit. PMID:34830372
Alleles of the GRF3-2A Gene in Wheat and Their Agronomic Value. PMID:34830258
Comprehensive Characterization of the Coding and Non-Coding Single Nucleotide Polymorphisms in the Tumor Protein p63 (TP63) Gene Using In Silico Tools. PMID:34827731
A Novel In Silico Benchmarked Pipeline Capable of Complete Protein Analysis: A Possible Tool for Potential Drug Discovery. PMID:34827106
Transcriptomic Profile of the Cockle Cerastoderma edule Exposed to Seasonal Diarrhetic Shellfish Toxin Contamination. PMID:34822568
Phylogenetic Distribution of WhiB- and Lsr2-Type Regulators in Actinobacteriophage Genomes. PMID:34817283
Characterization of the Flagellar Collar Reveals Structural Plasticity Essential for Spirochete Motility. PMID:34809456
High-quality whole-genome sequence analysis of Lactobacillus paragasseri UBLG-36 reveals oxalate-degrading potential of the strain. PMID:34797858
Isolation and analysis of a sake yeast mutant with phenylalanine accumulation. PMID:34788829
Panproteome Analysis of the Human Antibody Response to Bacterial Vaccines and Challenge. PMID:34784033
Genome-wide identification and expression profiling of Alba gene family members in response to abiotic stress in tomato (Solanum lycopersicum L.). PMID:34772358
Evaluating functional ligand-GPCR interactions in cell-based assays. PMID:34752330
Two apolipoproteins in salmon louse (Lepeophtheirus salmonis), apolipoprotein 1 knock down reduces reproductive capacity. PMID:34729423
A Novel Rice Curl Dwarf-Associated Picornavirus Encodes a 3C Serine Protease Recognizing Uncommon EPT/S Cleavage Sites. PMID:34721366
Post-translational Lysine Ac(et)ylation in Bacteria: A Biochemical, Structural, and Synthetic Biological Perspective. PMID:34721364
Identification of defense related gene families and their response against powdery and downy mildew infections in Vitis vinifera. PMID:34717533
Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch. PMID:34711171
Structural and Evolutionary Insights Into the Binding of Host Receptors by the Rabies Virus Glycoprotein. PMID:34708003
Rid7C, a Member of the YjgF/YER057c/UK114 (Rid) Protein Family, Is a Novel Endoribonuclease That Regulates the Expression of a Specialist RNA Polymerase Involved in Differentiation in Nonomuraea gerenzanensis. PMID:34694905
Identification of Transcription Factor Genes and Functional Characterization of PlMYB1 From Pueraria lobata. PMID:34691120
Novel Phage-Derived Depolymerase with Activity against Proteus mirabilis Biofilms. PMID:34683494
Genome-Wide Identification and Function of Aquaporin Genes During Dormancy and Sprouting Periods of Kernel-Using Apricot (Prunus armeniaca L.). PMID:34671366
RefPlantNLR is a comprehensive collection of experimentally validated plant disease resistance proteins from the NLR family. PMID:34669691
Probing the Peculiarity of EhRabX10, a pseudoRab GTPase, from the Enteric Parasite Entamoeba histolytica through In Silico Modeling and Docking Studies. PMID:34660804
Genome-Wide Identification and Low-Temperature Expression Analysis of bHLH Genes in Prunus mume. PMID:34659372
Differential STAT gene expressions of Penaeus monodon and Macrobrachium rosenbergii in response to white spot syndrome virus (WSSV) and bacterial infections: Additional insight into genetic variations and transcriptomic highlights. PMID:34653229
The Jacalin-Related Lectin HvHorcH Is Involved in the Physiological Response of Barley Roots to Salt Stress. PMID:34638593
Evaluation of Genome Sequences of the Bacteriophages JeTaime and Luna22. PMID:34617782
Optimizing Efficient RNAi-Mediated Control of Hemipteran Pests (Psyllids, Leafhoppers, Whitefly): Modified Pyrimidines in dsRNA Triggers. PMID:34579315
Global Transcriptome Profile of the Oleaginous Yeast Saitozyma podzolica DSM 27192 Cultivated in Glucose and Xylose. PMID:34575796
In Silico Characterization of Calcineurin from Pathogenic Obligate Intracellular Trypanosomatids: Potential New Biological Roles. PMID:34572535
StAR-Related Lipid Transfer (START) Domains Across the Rice Pangenome Reveal How Ontogeny Recapitulated Selection Pressures During Rice Domestication. PMID:34567086
Genome-Wide Transcription Factor DNA Binding Sites and Gene Regulatory Networks in Clostridium thermocellum. PMID:34566906
New Cytoplasmic Virus-Like Elements (VLEs) in the Yeast Debaryomyces hansenii. PMID:34564619
The complete genome sequence of a novel chrysovirus from the entomopathogenic fungus Beauveria bassiana Vuillemin. PMID:34553285
Unique patterns of mating pheromone presence and absence could result in the ambiguous sexual behaviors of Colletotrichum species. PMID:34544120
Heat-killed Mycolicibacterium aurum Aogashima: An environmental nonpathogenic actinobacteria under development as a safe novel food ingredient. PMID:34531996
Neofunctionalization of an ancient domain allows parasites to avoid intraspecific competition by manipulating host behaviour. PMID:34531391
Feruloyl esterase Fae1 is required specifically for host colonisation by the rice-blast fungus Magnaporthe oryzae. PMID:34524467
Characterization of the NiRAN domain from RNA-dependent RNA polymerase provides insights into a potential therapeutic target against SARS-CoV-2. PMID:34516563
Genome-wide analysis of BpDof genes and the tolerance to drought stress in birch (Betula platyphylla). PMID:34513325
Functional characterization of a cellulose synthase, CtCESA1, from the marine red alga Calliarthron tuberculosum (Corallinales). PMID:34505622
Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota. PMID:34489402
The Ancient Salicoid Genome Duplication Event: A Platform for Reconstruction of De Novo Gene Evolution in Populus trichocarpa. PMID:34469536
Biosynthesis of Fungal Drimane-Type Sesquiterpene Esters. PMID:34468074
A high-quality chromosome-scale assembly of the centipedegrass [Eremochloa ophiuroides (Munro) Hack.] genome provides insights into chromosomal structural evolution and prostrate growth habit. PMID:34465733
Differential protein expression during growth on model and commercial mixtures of naphthenic acids in Pseudomonas fluorescens Pf-5. PMID:34459546
Characterisation and Distribution of Karaka Ōkahu Purepure Virus-A Novel Emaravirus Likely to Be Endemic to New Zealand. PMID:34452476
Identification and Characterization of the Masculinizing Function of the Helicoverpa armigera Masc Gene. PMID:34445352
Transposons-Based Clonal Diversity in Trematode Involves Parts of CR1 (LINE) in Eu- and Heterochromatin. PMID:34440303
A Y-linked anti-Müllerian hormone type-II receptor is the sex-determining gene in ayu, Plecoglossus altivelis. PMID:34437539
The Natterin Proteins Diversity: A Review on Phylogeny, Structure, and Immune Function. PMID:34437409
Classic Pentachlorophenol Hydroxylating Phenylalanine 4-Monooxygenase from Indigenous Bacillus tropicus Strain AOA-CPS1: Cloning, Overexpression, Purification, Characterization and Structural Homology Modelling. PMID:34417677
BB0562 is a nutritional virulence determinant with lipase activity important for Borrelia burgdorferi infection and survival in fatty acid deficient environments. PMID:34415955
The whale shark genome reveals patterns of vertebrate gene family evolution. PMID:34409936
Comparative genome analysis of Bacillus thuringiensis strain HD521 and HS18-1. PMID:34400725
Phytophthora capsici CBM1-containing protein CBP3 is an apoplastic effector with plant immunity-inducing activity. PMID:34382319
Host adaptation in gut Firmicutes is associated with sporulation loss and altered transmission cycle. PMID:34348764
DNA methylation atlas and machinery in the developing and regenerating annelid Platynereis dumerilii. PMID:34340707
Genome Sequence of VanLee, a Singleton Actinobacteriophage That Infects Multiple Gordonia Strains. PMID:34323611
An Ancient Clade of Penelope-Like Retroelements with Permuted Domains Is Present in the Green Lineage and Protists, and Dominates Many Invertebrate Genomes. PMID:34320655
Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri. PMID:34294116
A novel Actinidia cytorhabdovirus characterized using genomic and viral protein interaction features. PMID:34288324
Co-evolutionary landscape at the interface and non-interface regions of protein-protein interaction complexes. PMID:34285778
Lower Funneling Pathways in Scedosporium Species. PMID:34276578
Genome Sequences of Akoni, Ashton, and Truong, Podoviridae Bacteriophages Isolated from Microbacterium foliorum. PMID:34264121
A Eukaryote-Wide Perspective on the Diversity and Evolution of the ARF GTPase Protein Family. PMID:34247240
Complete Genome Sequences of Mycobacteriophages Dallas and Jonghyun. PMID:34236221
The molecular identity of the characean OH- transporter: a candidate related to the SLC4 family of animal pH regulators. PMID:34232395
A genome wide transcriptional study of Populus alba x P. tremula var. glandulosa in response to nitrogen deficiency stress. PMID:34220043
A Genome-Wide Analysis of Pathogenesis-Related Protein-1 (PR-1) Genes from Piper nigrum Reveals Its Critical Role during Phytophthora capsici Infection. PMID:34208836
Genome-Wide Analysis of the YABBY Transcription Factor Family in Rapeseed (Brassica napus L.). PMID:34199012
Complete Genome Sequence of the Cluster B4 Mycobacteriophage Lolalove, Isolated in Charleston, South Carolina. PMID:34197200
Direct Molecular Evidence for an Ancient, Conserved Developmental Toolkit Controlling Posttranscriptional Gene Regulation in Land Plants. PMID:34196710
A computational model for GPCR-ligand interaction prediction. PMID:34171942
FINER: enhancing the prediction of tissue-specific functions of isoforms by refining isoform interaction networks. PMID:34169280
A multi-OMIC characterisation of biodegradation and microbial community succession within the PET plastisphere. PMID:34154652
Duplication and Functional Divergence of Branched-Chain Amino Acid Biosynthesis Genes in Aspergillus nidulans. PMID:34154419
Genome-Wide Identification of Wheat WRKY Gene Family Reveals That TaWRKY75-A Is Referred to Drought and Salt Resistances. PMID:34149760
Cyanochelins, an Overlooked Class of Widely Distributed Cyanobacterial Siderophores, Discovered by Silent Gene Cluster Awakening. PMID:34132591
The spike glycoprotein genes of porcine epidemic diarrhea viruses isolated in China. PMID:34130762
Pathways of Iron and Sulfur Acquisition, Cofactor Assembly, Destination, and Storage in Diverse Archaeal Methanogens and Alkanotrophs. PMID:34124941
Positive selection as a key player for SARS-CoV-2 pathogenicity: Insights into ORF1ab, S and E genes. PMID:34118359
Genome-Wide Identification Reveals That Nicotiana benthamiana Hypersensitive Response (HR)-Like Lesion Inducing Protein 4 (NbHRLI4) Mediates Cell Death and Salicylic Acid-Dependent Defense Responses to Turnip Mosaic Virus. PMID:34113359
Evolution of networks of protein domain organization. PMID:34103558
Phylogenomic Characterization of a Novel Corynebacterium Species Associated with Fatal Diphtheritic Stomatitis in Endangered Yellow-Eyed Penguins. PMID:34100641
Identification of over 200-fold more hairpin ribozymes than previously known in diverse circular RNAs. PMID:34096583
N6-methyladenosine RNA modification regulates strawberry fruit ripening in an ABA-dependent manner. PMID:34078442
TILLING-by-Sequencing+ Reveals the Role of Novel Fatty Acid Desaturases (GmFAD2-2s) in Increasing Soybean Seed Oleic Acid Content. PMID:34069320
HERV-K(HML7) Integrations in the Human Genome: Comprehensive Characterization and Comparative Analysis in Non-Human Primates. PMID:34069102
Amplification of RAD54B promotes progression of hepatocellular carcinoma via activating the Wnt/β-catenin signaling. PMID:34049150
In silico characterization of putative gene homologues involved in somatic embryogenesis suggests that some conifer species may lack LEC2, one of the key regulators of initiation of the process. PMID:34039265
Exploration of glutathione reductase for abiotic stress response in bread wheat (Triticum aestivum L.). PMID:34032897
The metabolic profile of Bifidobacterium dentium reflects its status as a human gut commensal. PMID:34030655
dSPRINT: predicting DNA, RNA, ion, peptide and small molecule interaction sites within protein domains. PMID:33999210
A salicylic acid inducible mulberry WRKY transcription factor, MiWRKY53 is involved in plant defence response. PMID:33997916
Evolution of Interbacterial Antagonism in Bee Gut Microbiota Reflects Host and Symbiont Diversification. PMID:33975963
Correlation of Key Physiological Properties of Methanosarcina Isolates with Environment of Origin. PMID:33931421
Genome-wide identification of superoxide dismutase gene families and their expression patterns under low-temperature, salt and osmotic stresses in watermelon and melon. PMID:33927985
Splice Variants of Superoxide Dismutases in Rice and Their Expression Profiles under Abiotic Stresses. PMID:33924430
Autosomal Recessive Retinitis Pigmentosa Associated with Three Novel REEP6 Variants in Chinese Population. PMID:33917198
A long-term field experiment demonstrates the influence of tillage on the bacterial potential to produce soil structure-stabilizing agents such as exopolysaccharides and lipopolysaccharides. PMID:33902712
Citrullination of Proteins as a Specific Response Mechanism in Plants. PMID:33897727
Elevated expression of the adhesion GPCR ADGRL4/ELTD1 promotes endothelial sprouting angiogenesis without activating canonical GPCR signalling. PMID:33893326
The Chemosensory Repertoire of the Eastern Diamondback Rattlesnake (Crotalus adamanteus) Reveals Complementary Genetics of Olfactory and Vomeronasal-Type Receptors. PMID:33881604
Physiologists turned Geneticists: Identifying transcripts and genes for neuronal function in the Marbled Crayfish, Procambarus virginalis. PMID:33880091
Genomic characterization of a polyvalent hydrocarbonoclastic bacterium Pseudomonas sp. strain BUN14. PMID:33854112
Metagenomic discovery and co-infection of diverse wobbly possum disease viruses and a novel hepacivirus in Australian brushtail possums. PMID:33829126
Incorporating Machine Learning into Established Bioinformatics Frameworks. PMID:33809353
Functional Analysis of Alkaline Phosphatase in Whitefly Bemisia tabaci (Middle East Asia Minor 1 and Mediterranean) on Different Host Plants. PMID:33805320
Olea Europaea Geminivirus: A Novel Bipartite Geminivirid Infecting Olive Trees. PMID:33804134
Genome Sequence of the Bacteriophage CL31 and Interaction with the Host Strain Corynebacterium glutamicum ATCC 13032. PMID:33802915
The role of GDP-l-galactose phosphorylase in the control of ascorbate biosynthesis. PMID:33793952
Immunity proteins of dual nuclease T6SS effectors function as transcriptional repressors. PMID:33786997
LmjF.36.3850, a novel hypothetical Leishmania major protein, contributes to the infection. PMID:33764520
Protein cleavage influences surface protein presentation in Mycoplasma pneumoniae. PMID:33762641
Identification of a novel glycerophosphodiester phosphodiesterase from Bacillus altitudinis W3 and its application in degradation of diphenyl phosphate. PMID:33758739
Expression of Ascaris lumbricoides putative virulence-associated genes when infecting a human host. PMID:33757548
Pleiotropic Roles for the Plasmodium berghei RNA Binding Protein UIS12 in Transmission and Oocyst Maturation. PMID:33747980
Catalase impairs Leishmania mexicana development and virulence. PMID:33724149
Carotenoids produced by the deep-sea bacterium Erythrobacter citreus LAMA 915: detection and proposal of their biosynthetic pathway. PMID:33723710
Genome-Wide Analysis Reveals the Potential Role of MYB Transcription Factors in Floral Scent Formation in Hedychium coronarium. PMID:33719296
BlueFeather, the singleton that wasn't: Shared gene content analysis supports expansion of Arthrobacter phage Cluster FE. PMID:33711060
Molecular Dissection of Escherichia coli CpdB: Roles of the N Domain in Catalysis and Phosphate Inhibition, and of the C Domain in Substrate Specificity and Adenosine Inhibition. PMID:33671286
Anaerobic endosymbiont generates energy for ciliate host by denitrification. PMID:33658719
The Campylobacter jejuni CiaD effector co-opts the host cell protein IQGAP1 to promote cell entry. PMID:33637714
Transcriptome analysis reveals differentially expressed MYB transcription factors associated with silicon response in wheat. PMID:33619339
Two PAAR Proteins with Different C-Terminal Extended Domains Have Distinct Ecological Functions in Myxococcus xanthus. PMID:33608292
Genome-wide identification, characterization, and expression analysis of tea plant autophagy-related genes (CsARGs) demonstrates that they play diverse roles during development and under abiotic stress. PMID:33596831
Study on cocoonase, sericin, and degumming of silk cocoon: computational and experimental. PMID:33594479
Polar Flagella Glycosylation in Aeromonas: Genomic Characterization and Involvement of a Specific Glycosyltransferase (Fgi-1) in Heterogeneous Flagella Glycosylation. PMID:33584564
Taxonomic Sampling and Rare Genomic Changes Overcome Long-Branch Attraction in the Phylogenetic Placement of Pseudoscorpions. PMID:33565584
Unprecedented Diversity of Unique CRISPR-Cas-Related Systems and Cas1 Homologs in Asgard Archaea. PMID:33555973
Molecular characterization of SlATG18f in response to Tomato leaf curl New Delhi virus infection in tomato and development of a CAPS marker for leaf curl disease tolerance. PMID:33554270
Diel transcriptional oscillations of light-sensitive regulatory elements in open-ocean eukaryotic plankton communities. PMID:33547239
4-Hydroxyphenylpyruvate Dioxygenase-Like Protein Promotes Pancreatic Cancer Cell Progression and Is Associated With Glutamine-Mediated Redox Balance. PMID:33537239
A persistent giant algal virus, with a unique morphology, encodes an unprecedented number of genes involved in energy metabolism. PMID:33536167
Genome-Wide Mining of MYB Transcription Factors in the Anthocyanin Biosynthesis Pathway of Gossypium Hirsutum. PMID:33502632
Chemoreceptor Diversity in Apoid Wasps and Its Reduction during the Evolution of the Pollen-Collecting Lifestyle of Bees (Hymenoptera: Apoidea). PMID:33484563
Integrative Computational Approaches to Inform Relative Bioaccumulation Potential of Per- and Polyfluoroalkyl Substances Across Species. PMID:33483745
Identification and Downstream Analyses of Domains Amplified in Plant Genomes: The Case of StAR-Related Lipid Transfer (START) Domains in Rice. PMID:33471342
A novel terpene synthase controls differences in anti-aphrodisiac pheromone production between closely related Heliconius butterflies. PMID:33465061
Genome-wide identification and characterization of NBS-encoding genes in Raphanus sativus L. and their roles related to Fusarium oxysporum resistance. PMID:33461498
The complete chloroplast genome of Araucaria cunninghamii (Araucariaceae). PMID:33458008
Transcription Inhibitors with XRE DNA-Binding and Cupin Signal-Sensing Domains Drive Metabolic Diversification in Pseudomonas. PMID:33436508
Two novel venom proteins underlie divergent parasitic strategies between a generalist and a specialist parasite. PMID:33431897
In Silico Characterization of Toxin-Antitoxin Systems in Campylobacter Isolates Recovered from Food Sources and Sporadic Human Illness. PMID:33430508
Disrupting the Homeostasis of High Mobility Group Protein Promotes the Systemic Movement of Bamboo mosaic virus. PMID:33424893
Genome-wide identification, evolution and expression analysis of the aspartic protease gene family during rapid growth of moso bamboo (Phyllostachys edulis) shoots. PMID:33423665
The Campylobacter jejuni chemoreceptor Tlp10 has a bimodal ligand-binding domain and specificity for multiple classes of chemoeffectors. PMID:33402336
Large-scale survey reveals pervasiveness and potential function of endogenous geminiviral sequences in plants. PMID:33391820
Functional Prediction and Assignment of Methanobrevibacter ruminantium M1 Operome Using a Combined Bioinformatics Approach. PMID:33391347
SLC46A1 Haplotype with Predicted Functional Impact has Prognostic Value in Breast Carcinoma. PMID:33387348
Identification of New Helicobacter pylori Subpopulations in Native Americans and Mestizos From Peru. PMID:33381095
Genome-Wide Identification and Expression Profiling of the PDI Gene Family Reveals Their Probable Involvement in Abiotic Stress Tolerance in Tomato (Solanum Lycopersicum L.). PMID:33375673
Origin and Evolution of the Human Bcl2-Associated Athanogene-1 (BAG-1). PMID:33353252
Identification and Expression Analysis of the CsMYB Gene Family in Root Knot Nematode-Resistant and Susceptible Cucumbers. PMID:33343619
Quorum Sensing System Affects the Plant Growth Promotion Traits of Serratia fonticola GS2. PMID:33329415
Deciphering the functional role of hypothetical proteins from Chloroflexus aurantiacs J-10-f1 using bioinformatics approach. PMID:33313333
Pan-genome analysis and ancestral state reconstruction of class halobacteria: probability of a new super-order. PMID:33273480
Phosphoglycerate kinase: structural aspects and functions, with special emphasis on the enzyme from Kinetoplastea. PMID:33234025
Evaluation on the use of Nanopore sequencing for direct characterization of coronaviruses from respiratory specimens, and a study on emerging missense mutations in partial RdRP gene of SARS-CoV-2. PMID:33225958
Mycobacterial STAND adenylyl cyclases: The HTH domain binds DNA to form biocrystallized nucleoids. PMID:33217386
Proteomics and Lipidomics Investigations to Decipher the Behavior of Willaertia magna C2c Maky According to Different Culture Modes. PMID:33207645
Transcriptome-wide identification of MAPKKK genes in bermudagrass (Cynodon dactylon L.) and their potential roles in low temperature stress responses. PMID:33194398
Genome Characterization of a Novel Wastewater Bacteroides fragilis Bacteriophage (vB_BfrS_23) and its Host GB124. PMID:33193224
Genomic islands and the evolution of livestock-associated Staphylococcus aureus genomes. PMID:33185245
Genome Sequences of Bacteriophages ClearAsMud and Kauala, Isolated from Microbacterium foliorum. PMID:33184160
Remarkable shift in structural and functional properties of an animal charcoal-polluted soil accentuated by inorganic nutrient amendment. PMID:33175233
Genome-Wide Analysis of the Five Phosphate Transporter Families in Camelina sativa and Their Expressions in Response to Low-P. PMID:33171866
Identification and characterization of the proteolytic flagellin from the common freshwater bacterium Hylemonella gracilis. PMID:33149258
Genome-scale metabolic reconstruction of the non-model yeast Issatchenkia orientalis SD108 and its application to organic acids production. PMID:33134082
Directional divergence of Ep300 duplicates in teleosts and its implications. PMID:33129255
Comprehensive screening of genomic and metagenomic data reveals a large diversity of tetracycline resistance genes. PMID:33125315
Molecular Evolution and Expansion of the KUP Family in the Allopolyploid Cotton Species Gossypium hirsutum and Gossypium barbadense. PMID:33101325
Heterologous Expression of the Core Genes in the Complex Fusarubin Gene Cluster of Fusarium Solani. PMID:33066643
Potential neuroinvasive and neurotrophic properties of SARS-CoV-2 in pediatric patients: comparison of SARS-CoV-2 with non-segmented RNA viruses. PMID:33057966
Identification and Characterization of Neuropeptides and Their G Protein-Coupled Receptors (GPCRs) in the Cowpea Aphid Aphis craccivora. PMID:33042012
Extracellular heme recycling and sharing across species by novel mycomembrane vesicles of a Gram-positive bacterium. PMID:33037324
Heme-Peroxidase 2, a Peroxinectin-Like Gene, Regulates Bacterial Homeostasis in Anopheles stephensi Midgut. PMID:33013485
Diagnosis, genetic variations, virulence, and toxicity of AHPND-positive Vibrio parahaemolyticus in Penaeus monodon. PMID:33013009
Allelic Variation of MYB10 Is the Major Force Controlling Natural Variation in Skin and Flesh Color in Strawberry (Fragaria spp.) Fruit. PMID:33004617
A Functional K+ Channel from Tetraselmis Virus 1, a Member of the Mimiviridae. PMID:33003637
Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment. PMID:32998428
Flagella by numbers: comparative genomic analysis of the supernumerary flagellar systems among the Enterobacterales. PMID:32993503
Meta-Transcriptomic Discovery of a Divergent Circovirus and a Chaphamaparvovirus in Captive Reptiles with Proliferative Respiratory Syndrome. PMID:32992674
Evolutionary Dynamics of Transposable Elements Following a Shared Polyploidization Event in the Tribe Andropogoneae. PMID:32988994
The Genetic Architecture of Emerging Fungicide Resistance in Populations of a Global Wheat Pathogen. PMID:32986802
Genome Sequence and Characterization of Five Bacteriophages Infecting Streptomyces Coelicolor and Streptomyces Venezuelae: Alderaan, Coruscant, Dagobah, Endor1 and Endor2. PMID:32977693
Different Families of Retrotransposons and DNA Transposons Are Actively Transcribed and May Have Transposed Recently in Physcomitrium (Physcomitrella) patens. PMID:32973835
Comparative Analysis of the Secretome and Interactome of Trypanosoma cruzi and Trypanosoma rangeli Reveals Species Specific Immune Response Modulating Proteins. PMID:32973747
G-Quadruplexes in the Archaea Domain. PMID:32967357
Metabolic cooperativity between Porphyromonas gingivalis and Treponema denticola. PMID:32944158
The BB0345 Hypothetical Protein of Borrelia burgdorferi Is Essential for Mammalian Infection. PMID:32928963
The Globin Gene Family in Arthropods: Evolution and Functional Diversity. PMID:32922435
ILRUN, a Human Plasma Lipid GWAS Locus, Regulates Lipoprotein Metabolism in Mice. PMID:32912065
Bacillus velezensis 83 a bacterial strain from mango phyllosphere, useful for biological control and plant growth promotion. PMID:32894363
Meta-transcriptomic identification of Trypanosoma spp. in native wildlife species from Australia. PMID:32891158
An Unexpectedly Complex Mitoribosome in Andalucia godoyi, a Protist with the Most Bacteria-like Mitochondrial Genome. PMID:32886790
UCSF ChimeraX: Structure visualization for researchers, educators, and developers. PMID:32881101
Jasmonate induced alternative splicing responses in Arabidopsis. PMID:32875268
Promiscuous Enzyme Activity as a Driver of Allo and Iso Convergent Evolution, Lessons from the β-Lactamases. PMID:32872436
First Report of Pathogenic Bacterium Kalamiella piersonii Isolated from Urine of a Kidney Stone Patient: Draft Genome and Evidence for Role in Struvite Crystallization. PMID:32872396
Nostoc edaphicum CCNP1411 from the Baltic Sea-A New Producer of Nostocyclopeptides. PMID:32858999
Investigating Cell Signaling with Gene Expression Datasets. PMID:32855998
Homology modeling and molecular dynamics based insights into Chalcone synthase and Chalcone isomerase in Phyllanthus emblica L. PMID:32832333
Complete Genome Sequence of Sulfitobacter Phage ϕGT1, Isolated from a Tidal Flat. PMID:32817157
Genome Sequences of the Mycobacteriophages Awesomesauce and LastJedi. PMID:32816978
Slr4, a newly identified S-layer protein from marine Gammaproteobacteria, is a major biofilm matrix component. PMID:32804439
QTL Mapping and Marker Development for Tolerance to Sulfur Phytotoxicity in Melon (Cucumis melo). PMID:32793259
Genome-wide identification and characterization of bHLH family genes from Ginkgo biloba. PMID:32792673
Cloning and functional expression of a food-grade circular bacteriocin, plantacyclin B21AG, in probiotic Lactobacillus plantarum WCFS1. PMID:32785265
Aedes aegypti from Amazon Basin Harbor High Diversity of Novel Viral Species. PMID:32784421
A Chinese White Pear (Pyrus bretschneideri) BZR Gene PbBZR1 Act as a Transcriptional Repressor of Lignin Biosynthetic Genes in Fruits. PMID:32765567
Molecular Evolution and Characterization of Fish Stathmin Genes. PMID:32752168
A conserved coccidian gene is involved in Toxoplasma sensitivity to the anti-apicomplexan compound, tartrolon E. PMID:32738587
Transcriptome wide identification and characterization of regulatory genes involved in EAA metabolism and validation through expression analysis in different developmental stages of finger millet spikes. PMID:32728514
The Complete Genome Sequence of the Staphylococcus Bacteriophage Metroid. PMID:32727926
The wheat pathogen Zymoseptoria tritici senses and responds to different wavelengths of light. PMID:32711450
Catabolism and interactions of uncultured organisms shaped by eco-thermodynamics in methanogenic bioprocesses. PMID:32709258
Penicillin G acylase production by Mucor griseocyanus and the partial genetic analysis of its pga gene. PMID:32705496
Calmodulin-binding transcription activator (CAMTA) genes family: Genome-wide survey and phylogenetic analysis in flax (Linum usitatissimum). PMID:32702710
Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome. PMID:32690954
The Bartonella autotransporter BafA activates the host VEGF pathway to drive angiogenesis. PMID:32678094
Genome-Wide Identification, Evolution, and Expression of GDSL-Type Esterase/Lipase Gene Family in Soybean. PMID:32670311
Identification of A Putative T6SS Immunity Islet in Salmonella Typhi. PMID:32664482
Discovery of multi-operon colinear syntenic blocks in microbial genomes. PMID:32657415
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. PMID:32652120
Using iCn3D and the World Wide Web for structure-based collaborative research: Analyzing molecular interactions at the root of COVID-19. PMID:32637961
Phylogenetic analysis of the ATP-binding cassette proteins suggests a new ABC protein subfamily J in Aedes aegypti (Diptera: Culicidae). PMID:32631258
Fasciclin-like arabinogalactan gene family in Nicotiana benthamiana: genome-wide identification, classification and expression in response to pathogens. PMID:32611364
Computational analysis of microarray data of Arabidopsis thaliana challenged with Alternaria brassicicola for identification of key genes in Brassica. PMID:32607787
MetaRibo-Seq measures translation in microbiomes. PMID:32601270
PelX is a UDP-N-acetylglucosamine C4-epimerase involved in Pel polysaccharide-dependent biofilm formation. PMID:32601062
Metatranscriptomic Analysis of Virus Diversity in Urban Wild Birds with Paretic Disease. PMID:32581107
GapMind: Automated Annotation of Amino Acid Biosynthesis. PMID:32576650
Bioinformatics analysis of BBX family genes and its response to UV-B in Arabidopsis thaliana. PMID:32552524
Molecular evolution and genetic variations of V and W proteins derived by RNA editing in Avian Paramyxoviruses. PMID:32533018
New insights into the evolution of host specificity of three Penicillium species and the pathogenicity of P. Italicum involving the infection of Valencia orange (Citrus sinensis). PMID:32525727
The endolysin of the Acinetobacter baumannii phage vB_AbaP_D2 shows broad antibacterial activity. PMID:32519416
Obtaining extremely large and accurate protein multiple sequence alignments from curated hierarchical alignments. PMID:32500917
Repurposing Modular Polyketide Synthases and Non-ribosomal Peptide Synthetases for Novel Chemical Biosynthesis. PMID:32500080
Identification of Callose Synthases in Stinging Nettle and Analysis of Their Expression in Different Tissues. PMID:32481765
Questing functions and structures of hypothetical proteins from Campylobacter jejuni: a computer-aided approach. PMID:32458979
Polar or Charged Residues Located in Four Highly Conserved Motifs Play a Vital Role in the Function or pH Response of a UPF0118 Family Na+(Li+)/H+ Antiporter. PMID:32457721
Genome-Wide Dissection of the CRF Gene Family in Brassica napus Indicates that BnaCRF8s Specifically Regulate Root Architecture and Phosphate Homeostasis against Phosphate Fluctuation in Plants. PMID:32455955
Insight into the Lifestyle of Amoeba Willaertia magna during Bioreactor Growth Using Transcriptomics and Proteomics. PMID:32455615
Dynamic Expansion and Functional Evolutionary Profiles of Plant Conservative Gene Family SBP-Box in Twenty Two Flowering Plants and the Origin of miR156. PMID:32414086
AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses. PMID:32402073
Automated Cell-Free Multiprotein Synthesis Facilitates the Identification of a Secretory, Oligopeptide Elicitor-Like, Immunoreactive Protein of the Oomycete Pythium insidiosum. PMID:32398276
Active Notch signaling is required for arm regeneration in a brittle star. PMID:32396580
Evolutionarily ancient BAH-PHD protein mediates Polycomb silencing. PMID:32393638
Oviz-Bio: a web-based platform for interactive cancer genomics data visualization. PMID:32392343
Past and ongoing adaptation of human cytomegalovirus to its host. PMID:32384127
An Acyl-CoA N-Acyltransferase Regulates Meristem Phase Change and Plant Architecture in Barley. PMID:32376761
Pathogenicity-associated protein domains: The fiercely-conserved evolutionary signatures. PMID:32363241
Identification and Modeling of a GT-A Fold in the α-Dystroglycan Glycosylating Enzyme LARGE1. PMID:32356985
Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110. PMID:32346757
Transcriptomic Study of Substrate-Specific Transport Mechanisms for Iron and Carbon in the Marine Copiotroph Alteromonas macleodii. PMID:32345736
MiDaf16-like and MiSkn1-like gene families are reliable targets to develop biotechnological tools for the control and management of Meloidogyne incognita. PMID:32332904
AcademH, a lineage of Academ DNA transposons encoding helicase found in animals and fungi. PMID:32328173
Complete Genome Sequence of Xanthomonas vesicatoria Bacteriophage ΦXaF18, a Contribution to the Biocontrol of Bacterial Spot of Pepper in Mexico. PMID:32299878
Characterization of the Gh4CL gene family reveals a role of Gh4CL7 in drought tolerance. PMID:32293290
TREND: a platform for exploring protein function in prokaryotes based on phylogenetic, domain architecture and gene neighborhood analyses. PMID:32282909
Redox Coenzyme F420 Biosynthesis in Thermomicrobia Involves Reduction by Stand-Alone Nitroreductase Superfamily Enzymes. PMID:32276981
Cassava shrunken-2 homolog MeAPL3 determines storage root starch and dry matter content and modulates storage root postharvest physiological deterioration. PMID:32270429
Chromosome-level genome assembly, annotation and evolutionary analysis of the ornamental plant Asparagus setaceus. PMID:32257234
Subtilisin-like Pr1 proteases marking the evolution of pathogenicity in a wide-spectrum insect-pathogenic fungus. PMID:32253991
Cell-type diversity and regionalized gene expression in the planarian intestine. PMID:32240093
Egyptian Rousette IFN-ω Subtypes Elicit Distinct Antiviral Effects and Transcriptional Responses in Conspecific Cells. PMID:32231668
Experimental manipulation of selfish genetic elements links genes to microbial community function. PMID:32200751
What lies beneath: Hydra provides cnidarian perspectives into the evolution of FGFR docking proteins. PMID:32198667
Pseudo-Symmetric Assembly of Protodomains as a Common Denominator in the Evolution of Polytopic Helical Membrane Proteins. PMID:32189026
Cloning and characterization of two chlorophyll A/B binding protein genes and analysis of their gene family in Camellia sinensis. PMID:32165676
A Genome-Wide Association Study To Understand the Effect of Fusarium verticillioides Infection on Seedlings of a Maize Diversity Panel. PMID:32156690
Draft Genome Sequence of a New Zealand Isolate of Mycoplasma ovipneumoniae. PMID:32139576
A Tetratricopeptide Repeat Protein Regulates Carotenoid Biosynthesis and Chromoplast Development in Monkeyflowers (Mimulus). PMID:32132132
Role of Grina/Nmdara1 in the Central Nervous System Diseases. PMID:32124700
Ectopic Expression of Rv0023 Mediates Isoniazid/Ethionamide Tolerance via Altering NADH/NAD+ Levels in Mycobacterium smegmatis. PMID:32117088
Expression of DOCK10.1 protein revealed with a specific antiserum: insights into regulation of first exon isoforms of DOCK10. PMID:32112301
A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina. PMID:32103005
Metagenome Mining Reveals Hidden Genomic Diversity of Pelagimyophages in Aquatic Environments. PMID:32071164
Wheat PP2C-a10 regulates seed germination and drought tolerance in transgenic Arabidopsis. PMID:32065246
Parallel quorum-sensing system in Vibrio cholerae prevents signal interference inside the host. PMID:32059031
Genetic variants in the TORC2 gene promoter and their association with body measurement and carcass quality traits in Qinchuan cattle. PMID:32059009
Complete Genome Sequence of the Cluster F1 Mycobacteriophage KingMidas. PMID:32054715
Time-resolved proteomic profile of Amblyomma americanum tick saliva during feeding. PMID:32049966
Comparative genome characterization of the periodontal pathogen Tannerella forsythia. PMID:32046654
The First Non-LRV RNA Virus in Leishmania. PMID:32024293
Three members of the yeast N-BAR proteins family form heterogeneous lattices in vivo and interact differentially with two RabGAP proteins. PMID:32015451
Discovery of several thousand highly diverse circular DNA viruses. PMID:32014111
Comparative genomic analysis of the secondary flagellar (flag-2) system in the order Enterobacterales. PMID:32000682
Characterization of Mollivirus kamchatka, the First Modern Representative of the Proposed Molliviridae Family of Giant Viruses. PMID:31996429
Characterization and diversity of the complete set of GH family 3 enzymes from Rhodothermus marinus DSM 4253. PMID:31992772
Pel Polysaccharide Biosynthesis Requires an Inner Membrane Complex Comprised of PelD, PelE, PelF, and PelG. PMID:31988082
MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets. PMID:31956905
Isolation of an archaeon at the prokaryote-eukaryote interface. PMID:31942073
Lipid droplets can promote drug accumulation and activation. PMID:31932720
Identifying SNAREs by Incorporating Deep Learning Architecture and Amino Acid Embedding Representation. PMID:31920706
Whole genome sequencing of Borrelia miyamotoi isolate Izh-4: reference for a complex bacterial genome. PMID:31906865
Looking for the X Factor in Bacterial Pathogenesis: Association of orfX-p47 Gene Clusters with Toxin Genes in Clostridial and Non-Clostridial Bacterial Species. PMID:31906154
Genome-wide analysis of PYL-PP2C-SnRK2s family in Camellia sinensis. PMID:31903833
Genome-wide identification, characterisation and expression profile analysis of DEAD-box family genes in sweet potato wild ancestor Ipomoea trifida under abiotic stresses. PMID:31894476
Genome-wide identification and characterization of the ALOG gene family in Petunia. PMID:31888473
High-Throughput Sequencing Reveals Bell Pepper Endornavirus Infection in Pepper (Capsicum annum) in Slovakia and Enables Its Further Molecular Characterization. PMID:31887986
Transglycosylating β-d-galactosidase and α-l-fucosidase from Paenibacillus sp. 3179 from a hot spring in East Greenland. PMID:31868312
Intraspecific Diversity in the Cold Stress Response of Transposable Elements in the Diatom Leptocylindrus aporus. PMID:31861932
Depolarization-Associated CircRNA Regulate Neural Gene Expression and in Some Cases May Function as Templates for Translation. PMID:31861825
Characterization of p53 Family Homologs in Evolutionary Remote Branches of Holozoa. PMID:31861340
NCBI's Conserved Domain Database and Tools for Protein Domain Analysis. PMID:31851420
Emergence and Evolution of ERM Proteins and Merlin in Metazoans. PMID:31851361
Microsporidia with Vertical Transmission Were Likely Shaped by Nonadaptive Processes. PMID:31825473
Differential gene expression among three sex types reveals a MALE STERILITY 1 (CpMS1) for sex differentiation in papaya. PMID:31818257
Genome-Wide Distribution, Expression and Function Analysis of the U-Box Gene Family in Brassica oleracea L. PMID:31810369
Prevalence of Shigella boydii in Bangladesh: Isolation and Characterization of a Rare Phage MK-13 That Can Robustly Identify Shigellosis Caused by Shigella boydii Type 1. PMID:31787934
The mycolic acid reductase Rv2509 has distinct structural motifs and is essential for growth in slow-growing mycobacteria. PMID:31785114
RSH enzyme diversity for (p)ppGpp metabolism in Phaeodactylum tricornutum and other diatoms. PMID:31776430
2, 3-Dihydro-3β-methoxy Withaferin-A Lacks Anti-Metastasis Potency: Bioinformatics and Experimental Evidences. PMID:31757995
Comparative genomics reveals a novel genetic organization of the sad cluster in the sulfonamide-degrader 'Candidatus Leucobacter sulfamidivorax' strain GP. PMID:31752666
Survey and Characterization of Jingmen Tick Virus Variants. PMID:31744216
Characterization of the diverse plasmid pool harbored by the blaNDM-1-containing Acinetobacter bereziniae HPC229 clinical strain. PMID:31743332
Bioinformatic Analysis of the Type VI Secretion System and Its Potential Toxins in the Acinetobacter Genus. PMID:31736933
Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110. PMID:31736895
Complete Genome Sequences of Seven EA Cluster Microbacteriophages, Bustleton, MillyPhilly, Riyhil, Phriends, Pherbot, PrincePhergus, and TinSulphur. PMID:31727713
A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data. PMID:31720216
Long-term, sustained feeding by Asian citrus psyllid disrupts salicylic acid homeostasis in sweet orange. PMID:31718546
Genome-Wide Analysis of Basic Helix-Loop-Helix Superfamily Members Reveals Organization and Chilling-Responsive Patterns in Cabbage (Brassica oleracea var. capitata L.). PMID:31717469
Three Quantitative Trait Loci Explain More than 60% of Variation for Chill Coma Recovery Time in a Natural Population of Drosophila ananassae. PMID:31690597
Genome-wide identification and characterization, phylogenetic comparison and expression profiles of SPL transcription factor family in B. juncea (Cruciferae). PMID:31689304
Fine-mapping of a major QTL (Fwr1) for fusarium wilt resistance in radish. PMID:31686113
Red-Brown Pigmentation of Acidipropionibacterium jensenii Is Tied to Haemolytic Activity and cyl-Like Gene Cluster. PMID:31671651
Isolation and Genome Sequencing of a Novel Pseudomonas aeruginosa Phage PA-YS35. PMID:31664502
Structural Characterization of Full-Length Human Dehydrodolichyl Diphosphate Synthase Using an Integrative Computational and Experimental Approach. PMID:31661879
Transcriptome-Based Identification and Molecular Evolution of the Cytochrome P450 Genes and Expression Profiling under Dimethoate Treatment in Amur Stickleback (Pungitius sinensis). PMID:31661806
The draft genome of Actinia tenebrosa reveals insights into toxin evolution. PMID:31641475
Mutations in Glucan, Water Dikinase Affect Starch Degradation and Gametophore Development in the Moss Physcomitrella patens. PMID:31641159
Eutherian-Specific Gene TRIML2 Attenuates Inflammation in the Evolution of Placentation. PMID:31633784
Universal concept signature analysis: genome-wide quantification of new biological and pathological functions of genes and pathways. PMID:31631213
The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex. PMID:31616444
Zinc binding proteome of a phytopathogen Xanthomonas translucens pv. undulosa. PMID:31598288
Variable Surface Glycoprotein from Trypanosoma brucei Undergoes Cleavage by Matrix Metalloproteinases: An in silico Approach. PMID:31597256
The ACT domain in chloroplast precursor-phosphorylating STY kinases binds metabolites and allosterically regulates kinase activity. PMID:31594863
Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens. PMID:31585998
Fusion transcription factors for strong, constitutive expression of cellulases and xylanases in Trichoderma reesei. PMID:31583017
Genome-wide identification and expression analyses of the LEA protein gene family in tea plant reveal their involvement in seed development and abiotic stress responses. PMID:31575979
Analysis of seven putative Na+/H+ antiporters of Arthrospira platensis NIES-39 using transcription profiling and in silico studies: an indication towards alkaline pH acclimation. PMID:31564780
Genome Mining Coupled with OSMAC-Based Cultivation Reveal Differential Production of Surugamide A by the Marine Sponge Isolate Streptomyces sp. SM17 When Compared to Its Terrestrial Relative S. albidoflavus J1074. PMID:31561472
Four Aromatic Intradiol Ring Cleavage Dioxygenases from Aspergillus niger. PMID:31540981
ApicoTFdb: the comprehensive web repository of apicomplexan transcription factors and transcription-associated co-factors. PMID:31529106
Systematic prediction of functionally linked genes in bacterial and archaeal genomes. PMID:31520072
Analysis of Zobellella denitrificans ZD1 draft genome: Genes and gene clusters responsible for high polyhydroxybutyrate (PHB) production from glycerol under saline conditions and its CRISPR-Cas system. PMID:31513626
DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning. PMID:31510699
New Halonotius Species Provide Genomics-Based Insights Into Cobalamin Synthesis in Haloarchaea. PMID:31507553
Origins and Evolution of the α-L-Fucosidases: From Bacteria to Metazoans. PMID:31507539
A protein architecture guided screen for modification dependent restriction endonucleases. PMID:31504772
Genome-wide identification and characterization of the Hsp70 gene family in allopolyploid rapeseed (Brassica napus L.) compared with its diploid progenitors. PMID:31497395
SmPPT, a 4-hydroxybenzoate polyprenyl diphosphate transferase gene involved in ubiquinone biosynthesis, confers salt tolerance in Salvia miltiorrhiza. PMID:31471635
A Quorum-Sensing Inhibitor Strain of Vibrio alginolyticus Blocks Qs-Controlled Phenotypes in Chromobacterium violaceum and Pseudomonas aeruginosa. PMID:31450549
Enzymatic Degradation of Biofilm by Metalloprotease From Microbacterium sp. SKS10. PMID:31448272
Genotypes of glycoprotein B gene among the Indian symptomatic neonates with congenital CMV infection. PMID:31438890
A Membrane-Bound Cytochrome Enables Methanosarcina acetivorans To Conserve Energy from Extracellular Electron Transfer. PMID:31431545
Deciphering GRINA/Lifeguard1: Nuclear Location, Ca2+ Homeostasis and Vesicle Transport. PMID:31426446
Retained Acetylated Histone Four in Bull Sperm Associated With Fertility. PMID:31417913
Gene expression correlates of facultative predation in the blow fly Chrysomya rufifacies (Diptera: Calliphoridae). PMID:31410272
Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters. PMID:31405375
Comparative Genomics of Marine Sponge-Derived Streptomyces spp. Isolates SM17 and SM18 With Their Closest Terrestrial Relatives Provides Novel Insights Into Environmental Niche Adaptations and Secondary Metabolite Biosynthesis Potential. PMID:31404169
Computational analysis of high-risk SNPs in human CHK2 gene responsible for hereditary breast cancer: A functional and structural impact. PMID:31398194
Knockout of Babesia bovis rad51 ortholog and its complementation by expression from the BbACc3 artificial chromosome platform. PMID:31386669
Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain. PMID:31381486
Novel Tick Phlebovirus Genotypes Lacking Evidence for Vertebrate Infections in Anatolia and Thrace, Turkey. PMID:31374842
On a Robust, Sensitive Cell-Free Method for Pseudomonas Sensing and Quantification in Microfluidic Templated Hydrogels. PMID:31370199
Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids. PMID:31366885
Molecular Evolution and Functional Analysis of Rubredoxin-Like Proteins in Plants. PMID:31355252
Melatonin enhances cotton immunity to Verticillium wilt via manipulating lignin and gossypol biosynthesis. PMID:31349367
Transcriptomic Analysis of Mucor irregularis Containing a Negative Single-Stranded RNA Mycovirus. PMID:31346013
Genomic Insights Into Plant-Growth-Promoting Potentialities of the Genus Frankia. PMID:31333602
Novel hepatitis D-like agents in vertebrates and invertebrates. PMID:31321078
Xanthomonas citri subsp. citri and Xanthomonas arboricola pv. pruni: Comparative analysis of two pathogens producing similar symptoms in different host plants. PMID:31318915
Identification and temporal expression profiles of cuticular proteins in the endoparasitoid wasp, Microplitis mediator. PMID:31317624
ADGRL4/ELTD1 is a highly conserved angiogenesis-associated orphan adhesion GPCR that emerged with the first vertebrates and comprises 3 evolutionary variants. PMID:31299890
Determination of the evolutionary pressure on Camellia oleifera on Hainan Island using the complete chloroplast genome sequence. PMID:31289703
Bacterial MbtH-like Proteins Stimulate Nonribosomal Peptide Synthetase-Derived Secondary Metabolism in Filamentous Fungi. PMID:31284717
Genome-wide identification and functional analysis of oleosin genes in Brassica napus L. PMID:31272381
Biochemical Characterization of a Novel Monospecific Endo-β-1,4-Glucanase Belonging to GH Family 5 From a Rhizosphere Metagenomic Library. PMID:31258522
Characterization of the Streptomyces coelicolor Glycoproteome Reveals Glycoproteins Important for Cell Wall Biogenesis. PMID:31239379
Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family. PMID:31239280
Genome-wide characterization of aspartic protease (AP) gene family in Populus trichocarpa and identification of the potential PtAPs involved in wood formation. PMID:31234799
COP9 Signalosome Interaction with UspA/Usp15 Deubiquitinase Controls VeA-Mediated Fungal Multicellular Development. PMID:31216760
Insights into Klebsiella pneumoniae type VI secretion system transcriptional regulation. PMID:31215404
Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation. PMID:31214244
Pathogenicity and functional impact of non-frameshifting insertion/deletion variation in the human genome. PMID:31199787
Evolution and comparative genomics of the most common Trichoderma species. PMID:31189469
Annotation and Expression of IDN2-like and FDM-like Genes in Sexual and Aposporous Hypericum perforatum L. accessions. PMID:31181659
Complete genome sequence and phylogenetic analysis of nosocomial pathogen Acinetobacter nosocomialis strain NCTC 8102. PMID:31177378
Bacteria-Killing Type IV Secretion Systems. PMID:31164878
A novel thermostable and halophilic thioredoxin reductase from the Red Sea Atlantis II hot brine pool. PMID:31150456
Genome Sequences of Six Cluster N Mycobacteriophages, Kevin1, Nenae, Parmesanjohn, ShrimpFriedEgg, Smurph, and SpongeBob, Isolated on Mycobacterium smegmatis mc2155. PMID:31147431
Genome Analysis of Hypomyces perniciosus, the Causal Agent of Wet Bubble Disease of Button Mushroom (Agaricus bisporus). PMID:31146507
Complete nucleotide sequence of a new geminivirus isolated from Vitis vinifera in India: a symptomless host of Grapevine red blotch virus. PMID:31143838
Recreation of in-host acquired single nucleotide polymorphisms by CRISPR-Cas9 reveals an uncharacterised gene playing a role in Aspergillus fumigatus azole resistance via a non-cyp51A mediated resistance mechanism. PMID:31128273
Epigenetics and transcription regulation during eukaryotic diversification: the saga of TFIID. PMID:31123066
Different Evolutionary Trajectories of Two Insect-Specific Paralogous Proteins Involved in Stabilizing Muscle Myofibrils. PMID:31123042
A Brief History of Protein Sorting Prediction. PMID:31119599
MGERT: a pipeline to retrieve coding sequences of mobile genetic elements from genome assemblies. PMID:31114637
The most abundant cyst wall proteins of Acanthamoeba castellanii are lectins that bind cellulose and localize to distinct structures in developing and mature cyst walls. PMID:31095564
Unexpected connections between type VI-B CRISPR-Cas systems, bacterial natural competence, ubiquitin signaling network and DNA modification through a distinct family of membrane proteins. PMID:31089700
Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism. PMID:31088371
Comparative Analysis of the aquaporin Gene Family in 12 Fish Species. PMID:31086002
Origin of a Core Bacterial Gene via Co-option and Detoxification of a Phage Lysin. PMID:31080080
The Nodule-Specific PLAT Domain Protein NPD1 Is Required for Nitrogen-Fixing Symbiosis. PMID:31061106
Arboviral screening of invasive Aedes species in northeastern Turkey: West Nile virus circulation and detection of insect-only viruses. PMID:31059502
Protein features for assembly of the RNA editing helicase 2 subcomplex (REH2C) in Trypanosome holo-editosomes. PMID:31034523
Deciphering the three-domain architecture in schlafens and the structures and roles of human schlafen12 and serpinB12 in transcriptional regulation. PMID:31026779
GlSir2.1 of Giardia lamblia is a NAD+-dependent cytoplasmic deacetylase. PMID:31025022
Bioinformatic and mutational studies of related toxin-antitoxin pairs in Mycobacterium tuberculosis predict and identify key functional residues. PMID:31018964
Genetic Mapping and Molecular Characterization of a Broad-spectrum Phytophthora sojae Resistance Gene in Chinese Soybean. PMID:31013701
MnoSR Is a Bona Fide Two-Component System Involved in Methylotrophic Metabolism in Mycobacterium smegmatis. PMID:31003982
Comparative RNA-seq analysis of the drought-sensitive lentil (Lens culinaris) root and leaf under short- and long-term water deficits. PMID:31001704
Characterization of putative proteins encoded by variable ORFs in white spot syndrome virus genome. PMID:30999895
Copy number variation of bovine SHH gene is associated with body conformation traits in Chinese beef cattle. PMID:30997664
Genome-Wide Analysis and Hormone Regulation of Chitin Deacetylases in Silkworm. PMID:30987273
Multi-gene phylogeny and divergence estimations for Evaniidae (Hymenoptera). PMID:30976469
Evaluation of the diversity and phylogenetic implications of NAC transcription factor members of four reference species from the different embryophytic plant groups. PMID:30956419
Protodomains: Symmetry-Related Supersecondary Structures in Proteins and Self-Complementarity. PMID:30945220
Oxygen Reductases in Alphaproteobacterial Genomes: Physiological Evolution From Low to High Oxygen Environments. PMID:30936856
Comparative genomics of human Lactobacillus crispatus isolates reveals genes for glycosylation and glycogen degradation: implications for in vivo dominance of the vaginal microbiota. PMID:30925932
Complete Genome Sequence of Rhodococcus erythropolis Phage Shuman. PMID:30923242
Identification of rfk-1, a Meiotic Driver Undergoing RNA Editing in Neurospora. PMID:30918007
Phenylpyrrole fungicides act on triosephosphate isomerase to induce methylglyoxal stress and alter hybrid histidine kinase activity. PMID:30911085
Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315. PMID:30894564
Angiosperm-Wide and Family-Level Analyses of AP2/ERF Genes Reveal Differential Retention and Sequence Divergence After Whole-Genome Duplication. PMID:30863419
Genome sequence of Xanthomonas fuscans subsp. fuscans strain Xff49: a new isolate obtained from common beans in Southern Brazil. PMID:30850979
Structural organization and functional divergence of high isoelectric point α-amylase genes in bread wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.). PMID:30845909
Colanic Acid Is a Novel Phage Receptor of Pectobacterium carotovorum subsp. carotovorum Phage POP72. PMID:30837957
Complete Genome Sequences of 12 B1 Cluster Mycobacteriophages, Gareth, JangoPhett, Kailash, MichaelPhcott, PhenghisKhan, Phleuron, Phergie, PhrankReynolds, PhrodoBaggins, Phunky, Vaticameos, and Virapocalypse. PMID:30834367
Draft Genome Sequencing of the Pathogenic Fungus Cladosporium phlei ATCC 36193 Identifies Candidates of Novel Polyketide Synthase Genes Involved in Perylenequinone-Group Pigment Production. PMID:30833809
Wide diversity of methane and short-chain alkane metabolisms in uncultured archaea. PMID:30833729
A Putative Type V Pilus Contributes to Bacteroides thetaiotaomicron Biofilm Formation Capacity. PMID:30833358
Paeniclostridium sordellii and Clostridioides difficile encode similar and clinically relevant tetracycline resistance loci in diverse genomic locations. PMID:30832583
Genome-Wide Associations of Chlorophyll Fluorescence OJIP Transient Parameters Connected With Soil Drought Response in Barley. PMID:30828338
Transcriptomic analyses highlight the likely metabolic consequences of colonization of a cnidarian host by native or non-native Symbiodinium species. PMID:30814067
Characterization and comparative analysis of toxin-antitoxin systems in Acetobacter pasteurianus. PMID:30805740
Origin and evolution of the octoploid strawberry genome. PMID:30804557
Draft Genome Sequence of the UV-Resistant Antarctic Bacterium Sphingomonas sp. Strain UV9. PMID:30801068
Molecular cloning and characterization of six defensin genes from lentil plant (Lens culinaris L.). PMID:30800615
Interaction map of Arabidopsis Mediator complex expounding its topology. PMID:30793213
Identification and Expression Profiling of Odorant Receptor Protein Genes in Sitophilus zeamais (Coleoptera: Curculionoidea) Using RT-qPCR. PMID:30783993
Borrelia burgdorferi bbk13 Is Critical for Spirochete Population Expansion in the Skin during Early Infection. PMID:30782856
Protein-coding variants implicate novel genes related to lipid homeostasis contributing to body-fat distribution. PMID:30778226
Comparison of Trihelix transcription factors between wheat and Brachypodium distachyon at genome-wide. PMID:30770726
MultiDomainBenchmark: a multi-domain query and subject database suite. PMID:30764761
Stenotrophomonas maltophilia AHL-Degrading Strains Isolated from Marine Invertebrate Microbiota Attenuate the Virulence of Pectobacterium carotovorum and Vibrio coralliilyticus. PMID:30762152
A polyextremophilic alcohol dehydrogenase from the Atlantis II Deep Red Sea brine pool. PMID:30761247
Oxidative Pathways of Deoxyribose and Deoxyribonate Catabolism. PMID:30746495
Resistant and susceptible cacao genotypes exhibit defense gene polymorphism and unique early responses to Phytophthora megakarya inoculation. PMID:30739243
Analysis of Anasplatyrhynchos genome resequencing data reveals genetic signatures of artificial selection. PMID:30735526
Bioinformatic discovery of a toxin family in Chryseobacterium piperi with sequence similarity to botulinum neurotoxins. PMID:30733520
Biostimulation potentials of corn steep liquor in enhanced hydrocarbon degradation in chronically polluted soil. PMID:30729070
Expansion of the fatty acyl reductase gene family shaped pheromone communication in Hymenoptera. PMID:30714899
A member of the CONSTANS-Like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptation. PMID:30705745
Identification, Functional Characterization, and Regulon Prediction of the Zinc Uptake Regulator (zur) of Bacillus anthracis - An Insight Into the Zinc Homeostasis of the Pathogen. PMID:30687290
"Candidatus Thermonerobacter thiotrophicus," A Non-phototrophic Member of the Bacteroidetes/Chlorobi With Dissimilatory Sulfur Metabolism in Hot Spring Mat Communities. PMID:30687241
Gut Virome Analysis of Cameroonians Reveals High Diversity of Enteric Viruses, Including Potential Interspecies Transmitted Viruses. PMID:30674646
Genomic Insights Into A Novel, Alkalitolerant Nitrogen Fixing Bacteria, Azonexus sp. Strain ZS02. PMID:30662569
Contact-dependent growth inhibition systems in Acinetobacter. PMID:30655547
The copBL operon protects Staphylococcus aureus from copper toxicity: CopL is an extracellular membrane-associated copper-binding protein. PMID:30655293
The Genetics of Mating Song Evolution Underlying Rapid Speciation: Linking Quantitative Variation to Candidate Genes for Behavioral Isolation. PMID:30647070
Ubiquitin fusion proteins in algae: implications for cell biology and the spread of photosynthesis. PMID:30642248
A cross-sectional screening by next-generation sequencing reveals Rickettsia, Coxiella, Francisella, Borrelia, Babesia, Theileria and Hemolivia species in ticks from Anatolia. PMID:30635006
Enterococcus faecium TIR-Domain Genes Are Part of a Gene Cluster Which Promotes Bacterial Survival in Blood. PMID:30631364
Electron and Proton Flux for Carbon Dioxide Reduction in Methanosarcina barkeri During Direct Interspecies Electron Transfer. PMID:30631315
Diversity of opisthokont septin proteins reveals structural constraints and conserved motifs. PMID:30616529
Transcriptional repression of the ectodomain sheddase ADAM10 by TBX2 and potential implication for Alzheimer's disease. PMID:30599067
Identification of the decumbenone biosynthetic gene cluster in Penicillium decumbens and the importance for production of calbistrin. PMID:30598828
The Nix locus on the male-specific homologue of chromosome 1 in Aedes albopictus is a strong candidate for a male-determining factor. PMID:30583734
Characterization and comparative genomic analysis of virulent and temperate Bacillus megaterium bacteriophages. PMID:30581654
A 33-Year-Old Plant Sample Contributes the First Complete Genomic Sequence of Potato Virus U. PMID:30574586
Identifying Pseudomonas syringae Type III Secreted Effector Function via a Yeast Genomic Screen. PMID:30573466
First Transcriptome Analysis of Iranian Scorpion, Mesobuthus Eupeus Venom Gland. PMID:30568706
A Genome Wide Association Study Reveals Markers and Genes Associated with Resistance to Fusarium verticillioides Infection of Seedlings in a Maize Diversity Panel. PMID:30567831
Distinctive Nuclear Features of Dinoflagellates with A Particular Focus on Histone and Histone-Replacement Proteins. PMID:30558155
Transcriptome Analysis Reveals Candidate Genes for Cold Tolerance in Drosophila ananassae. PMID:30545157
Bi-allelic TMEM94 Truncating Variants Are Associated with Neurodevelopmental Delay, Congenital Heart Defects, and Distinct Facial Dysmorphism. PMID:30526868
Photoperiod response-related gene SiCOL1 contributes to flowering in sesame. PMID:30526484
Insights Into Limnothrix sp. Metabolism Based on Comparative Genomics. PMID:30515147
Purification and partial characterization of LdtP, a cell envelope modifying enzyme in Liberibacter asiaticus. PMID:30497377
Evolutionary diversity and novelty of DNA repair genes in asexual Bdelloid rotifers. PMID:30486781
Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies. PMID:30483285
Origins and Evolution of the Global RNA Virome. PMID:30482837
Doublesex Evolution Is Correlated with Social Complexity in Ants. PMID:30476039
Arabidopsis thaliana DGAT3 is a [2Fe-2S] protein involved in TAG biosynthesis. PMID:30467384
Pivotal role of bZIPs in amylose biosynthesis by genome survey and transcriptome analysis in wheat (Triticum aestivum L.) mutants. PMID:30467374
Identification, Classification, and Functional Analysis of AP2/ERF Family Genes in the Desert Moss Bryum argenteum. PMID:30463185
Role of Cnot6l in maternal mRNA turnover. PMID:30456367
Comparative genomics of nuclear envelope proteins. PMID:30445911
Deciphering the evolutionary signatures of pinnipeds using novel genome sequences: The first genomes of Phoca largha, Callorhinus ursinus, and Eumetopias jubatus. PMID:30442995
Re-programming of Pseudomonas syringae pv. actinidiae gene expression during early stages of infection of kiwifruit. PMID:30442113
Broad-complex Z3 contributes to the ecdysone-mediated transcriptional regulation of the vitellogenin gene in Bombus lantschouensis. PMID:30440013
Increased sporulation underpins adaptation of Clostridium difficile strain 630 to a biologically-relevant faecal environment, with implications for pathogenicity. PMID:30420658
Intensive targeting of regulatory competence genes by transposable elements in streptococci. PMID:30406402
In silico Prediction, Characterization, Molecular Docking, and Dynamic Studies on Fungal SDRs as Novel Targets for Searching Potential Fungicides Against Fusarium Wilt in Tomato. PMID:30405403
Evolution and functional characterization of pectate lyase PEL12, a member of a highly expanded Clonostachys rosea polysaccharide lyase 1 family. PMID:30404596
Viral diversity of Rhipicephalus microplus parasitizing cattle in southern Brazil. PMID:30397237
Mining Late Embryogenesis Abundant (LEA) Family Genes in Cleistogenes songorica, a Xerophyte Perennial Desert Plant. PMID:30388835
Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages. PMID:30384840
New insights into tomato microRNAs. PMID:30375421
The extracellular loop of Man-PTS subunit IID is responsible for the sensitivity of Lactococcus garvieae to garvicins A, B and C. PMID:30361679
The Receptor-like Pseudokinase GHR1 Is Required for Stomatal Closure. PMID:30361234
Evidence for Cross Species Extrapolation of Mammalian-Based High-Throughput Screening Assay Results. PMID:30351027
Antigen discovery and specification of immunodominance hierarchies for MHCII-restricted epitopes. PMID:30349087
A Reverse Transcriptase-Cas1 Fusion Protein Contains a Cas6 Domain Required for Both CRISPR RNA Biogenesis and RNA Spacer Acquisition. PMID:30344094
Analysis of impact metrics for the Protein Data Bank. PMID:30325351
Network Analysis of RAD51 Proteins in Metazoa and the Evolutionary Relationships With Their Archaeal Homologs. PMID:30319685
Quorum Sensing Modulates the Epibiotic-Parasitic Relationship Between Actinomyces odontolyticus and Its Saccharibacteria epibiont, a Nanosynbacter lyticus Strain, TM7x. PMID:30319555
Global pentapeptide statistics are far away from expected distributions. PMID:30310110
Induction of antibacterial proteins and peptides in the coprophilous mushroom Coprinopsis cinerea in response to bacteria. PMID:30301946
W361R mutation in GaaR, the regulator of D-galacturonic acid-responsive genes, leads to constitutive production of pectinases in Aspergillus niger. PMID:30298571
In silico characterization of the global Geobacillus and Parageobacillus secretome. PMID:30285747
Genome-Wide Identification, Characterization, and Expression Profiling of the Legume BZR Transcription Factor Gene Family. PMID:30283468
Early Responses to Severe Drought Stress in the Arabidopsis thaliana Cell Suspension Culture Proteome. PMID:30279377
PIWI genes and piRNAs are ubiquitously expressed in mollusks and show patterns of lineage-specific adaptation. PMID:30272016
Molecular Characterization, Phylogenetic, Expression, and Protective Immunity Analysis of OmpF, a Promising Candidate Immunogen Against Yersinia ruckeri Infection in Channel Catfish. PMID:30271401
Tannerella forsythia Tfo belongs to Porphyromonas gingivalis HmuY-like family of proteins but differs in heme-binding properties. PMID:30266745
Selective human inhibitors of ATR and ATM render Leishmania major promastigotes sensitive to oxidative damage. PMID:30265735
The Origin of Mitochondria-Specific Outer Membrane β-Barrels from an Ancestral Bacterial Fragment. PMID:30265295
Considerations for Optimization of High-Throughput Sequencing Bioinformatics Pipelines for Virus Detection. PMID:30262776
ETV7 is an essential component of a rapamycin-insensitive mTOR complex in cancer. PMID:30258985
Role of Acetyltransferase PG1842 in Gingipain Biogenesis in Porphyromonas gingivalis. PMID:30249709
Tick galactosyltransferases are involved in α-Gal synthesis and play a role during Anaplasma phagocytophilum infection and Ixodes scapularis tick vector development. PMID:30242261
Gene regulation by a glycine riboswitch singlet uses a finely tuned energetic landscape for helical switching. PMID:30237163
Molecular Evolution of GDP-D-Mannose Epimerase (GME), a Key Gene in Plant Ascorbic Acid Biosynthesis. PMID:30233629
Combined functions of two RRMs in Dead-end1 mimic helicase activity to promote nanos1 translation in the germline. PMID:30230100
Diversity of Active Viral Infections within the Sphagnum Microbiome. PMID:30217851
Characterization of vB_Kpn_F48, a Newly Discovered Lytic Bacteriophage for Klebsiella pneumoniae of Sequence Type 101. PMID:30205588
Systematic discovery of natural CRISPR-Cas12a inhibitors. PMID:30190307
Genome-wide identification and characterization of LRR-RLKs reveal functional conservation of the SIF subfamily in cotton (Gossypium hirsutum). PMID:30189845
In silico Study of Iron, Zinc and Copper Binding Proteins of Pseudomonas syringae pv. lapsa: Emphasis on Secreted Metalloproteins. PMID:30186242
Respiratory chain Complex I of unparalleled divergence in diplonemids. PMID:30166340
Genetic variation affecting DNA methylation and the human imprinting disorder, Beckwith-Wiedemann syndrome. PMID:30165906
Complete genome of streamlined marine actinobacterium Pontimonas salivibrio strain CL-TW6T adapted to coastal planktonic lifestyle. PMID:30134835
Characterization of a Theme C Glycoside Hydrolase Family 9 Endo-Beta-Glucanase from a Biogas Reactor Metagenome. PMID:30123929
Genome-wide analysis of oligopeptide transporters and detailed characterization of yellow stripe transporter genes in hexaploid wheat. PMID:30120602
Proteome-Wide Analysis of Trypanosoma cruzi Exponential and Stationary Growth Phases Reveals a Subcellular Compartment-Specific Regulation. PMID:30111733
Biochemical characterization and spatio-temporal analysis of the putative L-DOPA pathway in Mucuna pruriens. PMID:30105476
Genome-wide identification of the auxin/indole-3-acetic acid (Aux/IAA) gene family in pepper, its characterisation, and comprehensive expression profiling under environmental and phytohormones stress. PMID:30104758
Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems. PMID:30103650
Divergent Hemogen genes of teleosts and mammals share conserved roles in erythropoiesis: analysis using transgenic and mutant zebrafish. PMID:30097520
Comparative transcriptomics of limb regeneration: Identification of conserved expression changes among three species of Ambystoma. PMID:30092345
Comparative Genome Analysis of 2 Mycobacterium Tuberculosis Strains from Pakistan: Insights Globally Into Drug Resistance, Virulence, and Niche Adaptation. PMID:30083049
Analyses of nervous system patterning genes in the tardigrade Hypsibius exemplaris illuminate the evolution of panarthropod brains. PMID:30069303
Genomic screening of new putative antiviral lectins from Amazonian cyanobacteria based on a bioinformatics approach. PMID:30035823
Homology Inference Based on a Reconciliation Approach for the Comparative Genomics of Protozoa. PMID:30034216
Complete Genome Sequence of Clostridium kluyveri JZZ Applied in Chinese Strong-Flavor Liquor Production. PMID:30030563
Single-Homology-Arm Linear DNA Recombination by the Nonhomologous End Joining Pathway as a Novel and Simple Gene Inactivation Method: a Proof-of-Concept Study in Dietzia sp. Strain DQ12-45-1b. PMID:30030230
Functional Characterization of Enzymatic Steps Involved in Pyruvylation of Bacterial Secondary Cell Wall Polymer Fragments. PMID:29997588
Large Noncoding RNAs in Bacteria. PMID:29992899
Post-translational regulation of a Porphyromonas gingivalis regulator. PMID:29988788
Genome Evolution of Bartonellaceae Symbionts of Ants at the Opposite Ends of the Trophic Scale. PMID:29982531
Patterns of Nucleotide Deletion and Insertion Inferred from Bacterial Pseudogenes. PMID:29982456
The complete genomic sequence of a novel botybirnavirus isolated from a phytopathogenic Bipolaris maydis. PMID:29967958
SDADB: a functional annotation database of protein structural domains. PMID:29961821
The FCS-like zinc finger scaffold of the kinase SnRK1 is formed by the coordinated actions of the FLZ domain and intrinsically disordered regions. PMID:29945970
β-N-Acetylglucosaminidase MthNAG from Myceliophthora thermophila C1, a thermostable enzyme for production of N-acetylglucosamine from chitin. PMID:29943052
Trichomonas vaginalis metalloproteinase TvMP50 is a monomeric Aminopeptidase P-like enzyme. PMID:29936696
Escherichia coli ItaT is a type II toxin that inhibits translation by acetylating isoleucyl-tRNAIle. PMID:29931259
In silico and in vitro analysis of boAP3d1 protein interaction with bovine leukaemia virus gp51. PMID:29928016
Pax3/7 duplicated and diverged independently in amphioxus, the basal chordate lineage. PMID:29925900
Recurrent Amplification of the Heterochromatin Protein 1 (HP1) Gene Family across Diptera. PMID:29924345
Homeobox Gene Duplication and Divergence in Arachnids. PMID:29924328
Endogenous retroviruses of non-avian/mammalian vertebrates illuminate diversity and deep history of retroviruses. PMID:29902269
The Arabidopsis AtUNC-93 Acts as a Positive Regulator of Abiotic Stress Tolerance and Plant Growth via Modulation of ABA Signaling and K+ Homeostasis. PMID:29899751
Genome sequencing analysis of Streptomyces coelicolor mutants that overcome the phosphate-depending vancomycin lethal effect. PMID:29898657
Unique function words characterize genomic proteins. PMID:29895692
Genetic Characterization of the Patois Serogroup (Genus Orthobunyavirus; Family Peribunyaviridae) and Evidence That Estero Real Virus is a Member of the Genus Orthonairovirus. PMID:29893199
Complete genome sequence of uropathogenic Escherichia coli isolate UPEC 26-1. PMID:29892948
Microcystin-LR-Triggered Neuronal Toxicity in Whitefish Does Not Involve MiR124-3p. PMID:29882005
Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution. PMID:29880023
Expression analysis of vitellogenins in the workers of the red imported fire ant (Solenopsis invicta). PMID:29868280
Unraveling the induction of phytoene synthase 2 expression by salt stress and abscisic acid in Daucus carota. PMID:29860511
Production of poly-β-1,6-N-acetylglucosamine by MatAB is required for hyphal aggregation and hydrophilic surface adhesion by Streptomyces. PMID:29850464
Salmonella enterica serovar Typhimurium has three transketolase enzymes contributing to the pentose phosphate pathway. PMID:29848552
Genome-Wide Screening and Characterization of the Dof Gene Family in Physic Nut (Jatropha curcas L.). PMID:29844264
Deletion of the Clostridium thermocellum recA gene reveals that it is required for thermophilic plasmid replication but not plasmid integration at homologous DNA sequences. PMID:29808293
Molecular modularity and asymmetry of the molluscan mantle revealed by a gene expression atlas. PMID:29788257
Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis. PMID:29784811
Linking Genomic and Metabolomic Natural Variation Uncovers Nematode Pheromone Biosynthesis. PMID:29779955
Genus-wide comparison of Pseudovibrio bacterial genomes reveal diverse adaptations to different marine invertebrate hosts. PMID:29775460
The Late Embryogenesis Abundant Protein Family in Cassava (Manihot esculenta Crantz): Genome-Wide Characterization and Expression during Abiotic Stress. PMID:29772750
Mutant phenotypes for thousands of bacterial genes of unknown function. PMID:29769716
Comparative in Silico Analysis of Ferric Reduction Oxidase (FRO) Genes Expression Patterns in Response to Abiotic Stresses, Metal and Hormone Applications. PMID:29757203
Searching whole genome sequences for biochemical identification features of emerging and reemerging pathogenic Corynebacterium species. PMID:29752561
Identification and structural characterization of a histidinol phosphate phosphatase from Mycobacterium tuberculosis. PMID:29752410
A Genomic and Proteomic Approach to Identify and Quantify the Expressed Bacillus thuringiensis Proteins in the Supernatant and Parasporal Crystal. PMID:29748494
Comprehensive analyses of the BES1 gene family in Brassica napus and examination of their evolutionary pattern in representative species. PMID:29743014
Extensive Differential Splicing Underlies Phenotypically Plastic Aphid Morphs. PMID:29722880
Strategies for high-altitude adaptation revealed from high-quality draft genome of non-violacein producing Janthinobacterium lividum ERGS5:01. PMID:29721151
Male-killing toxin in a bacterial symbiont of Drosophila. PMID:29720654
Genome-wide identification and characterization of the SBP-box gene family in Petunia. PMID:29703141
Characterization of a novel organic solute transporter homologue from Clonorchis sinensis. PMID:29702646
Mathematical Basis of Predicting Dominant Function in Protein Sequences by a Generic HMM-ANN Algorithm. PMID:29700659
Genome Wide Identification, Evolutionary, and Expression Analysis of VQ Genes from Two Pyrus Species. PMID:29690608
Rgg-Shp regulators are important for pneumococcal colonization and invasion through their effect on mannose utilization and capsule synthesis. PMID:29686372
De Novo Sequencing of a Sparassis latifolia Genome and Its Associated Comparative Analyses. PMID:29682127
Molecular identification of GAPDHs in cassava highlights the antagonism of MeGAPCs and MeATG8s in plant disease resistance against cassava bacterial blight. PMID:29679263
Culturing of female bladder bacteria reveals an interconnected urogenital microbiota. PMID:29674608
Phylogenomic Analysis of β-Lactamase in Archaea and Bacteria Enables the Identification of Putative New Members. PMID:29672703
Genome-Wide Analyses of Calcium Sensors Reveal Their Involvement in Drought Stress Response and Storage Roots Deterioration after Harvest in Cassava. PMID:29671773
Stonewall and Brickwall: Two Partially Redundant Determinants Required for the Maintenance of Female Germline in Drosophila. PMID:29669801
Two Abscisic Acid-Responsive Plastid Lipase Genes Involved in Jasmonic Acid Biosynthesis in Arabidopsis thaliana. PMID:29666162
Heat shock transcription factor 3 regulates plant immune response through modulation of salicylic acid accumulation and signalling in cassava. PMID:29660238
The genome sequence and transcriptome of Potentilla micrantha and their comparison to Fragaria vesca (the woodland strawberry). PMID:29659812
A sequence family database built on ECOD structural domains. PMID:29659718
Cameroonian fruit bats harbor divergent viruses, including rotavirus H, bastroviruses, and picobirnaviruses using an alternative genetic code. PMID:29644096
Large Diversity of Nonstandard Genes and Dynamic Evolution of Chloroplast Genomes in Siphonous Green Algae (Bryopsidales, Chlorophyta). PMID:29635329
Classification and phylogenetic analyses of the Arabidopsis and tomato G-type lectin receptor kinases. PMID:29625550
Phylogenomic and comparative analysis of the distribution and regulatory patterns of TPP riboswitches in fungi. PMID:29615754
FIGL1 and its novel partner FLIP form a conserved complex that regulates homologous recombination. PMID:29608566
Regulation of early endosomes across eukaryotes: Evolution and functional homology of Vps9 proteins. PMID:29603841
Genetic Variants in STAT3 Promoter Regions and Their Application in Molecular Breeding for Body Size Traits in Qinchuan Cattle. PMID:29596388
Identification and Characterization of Wheat Yellow Striate Virus, a Novel Leafhopper-Transmitted Nucleorhabdovirus Infecting Wheat. PMID:29593700
Genomic diversity of Taylorella equigenitalis introduced into the United States from 1978 to 2012. PMID:29584782
Population genomics of Fusarium graminearum reveals signatures of divergent evolution within a major cereal pathogen. PMID:29584736
Novel Parvoviruses from Wild and Domestic Animals in Brazil Provide New Insights into Parvovirus Distribution and Diversity. PMID:29565808
Old Yellow Enzyme from Trypanosoma cruzi Exhibits In Vivo Prostaglandin F2α Synthase Activity and Has a Key Role in Parasite Infection and Drug Susceptibility. PMID:29563916
Multispecies reconstructions uncover widespread conservation, and lineage-specific elaborations in eukaryotic mRNA metabolism. PMID:29561870
Natural variation of chronological aging in the Saccharomyces cerevisiae species reveals diet-dependent mechanisms of life span control. PMID:29560271
Transient Expression of CRISPR/Cas9 Machinery Targeting TcNPR3 Enhances Defense Response in Theobroma cacao. PMID:29552023
Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis. PMID:29545614
Ultrastructure of Highly Ordered Granules in Alveolar Type II Cells in Several Species. PMID:29544026
Genome-wide analysis of autophagy-related genes (ARGs) in grapevine and plant tolerance to copper stress. PMID:29541879
Cryptochrome Regulates Circadian Locomotor Rhythms in the Small Brown Planthopper Laodelphax striatellus (Fallén). PMID:29541034
Xanthomonas citri jumbo phage XacN1 exhibits a wide host range and high complement of tRNA genes. PMID:29540765
Formation of chimeric genes with essential functions at the origin of eukaryotes. PMID:29534719
Loss and gain of N-linked glycosylation sequons due to single-nucleotide variation in cancer. PMID:29531238
The SbcC and SbcD homologs of the cyanobacterium Anabaena sp. strain PCC7120 (Alr3988 and All4463) contribute independently to DNA repair. PMID:29524012
Insights into the Mechanisms of Chloroplast Division. PMID:29510533
Discovery and Biosynthesis of the Antibiotic Bicyclomycin in Distantly Related Bacterial Classes. PMID:29500259
Improving eukaryotic genome annotation using single molecule mRNA sequencing. PMID:29495964
Euphyllophyte Paleoviruses Illuminate Hidden Diversity and Macroevolutionary Mode of Caulimoviridae. PMID:29491164
c-di-GMP Regulates Various Phenotypes and Insecticidal Activity of Gram-Positive Bacillus thuringiensis. PMID:29487570
The End of a 60-year Riddle: Identification and Genomic Characterization of an Iridovirus, the Causative Agent of White Fat Cell Disease in Zooplankton. PMID:29487186
Mass spectrometric evidence for neuropeptide-amidating enzymes in Caenorhabditis elegans. PMID:29487130
Inhibition of Heat Shock proteins HSP90 and HSP70 induce oxidative stress, suppressing cotton fiber development. PMID:29483524
Electron Transfer to Nitrogenase in Different Genomic and Metabolic Backgrounds. PMID:29483165
Identification of a highly active tannase enzyme from the oral pathogen Fusobacterium nucleatum subsp. polymorphum. PMID:29482557
Metagenomic Profiling of Soil Microbes to Mine Salt Stress Tolerance Genes. PMID:29472909
Genetic Diversity and Functional Analysis of Sigma Factors in Enterobacter cloacae Complex Resourced From Various Niche. PMID:29472760
Promiscuous plasmid replication in thermophiles: Use of a novel hyperthermophilic replicon for genetic manipulation of Clostridium thermocellum at its optimum growth temperature. PMID:29468112
Polymorphism in Mitochondrial Group I Introns among Cryptococcus neoformans and Cryptococcus gattii Genotypes and Its Association with Drug Susceptibility. PMID:29467729
Genome-Wide Analysis of the GRF Family Reveals Their Involvement in Abiotic Stress Response in Cassava. PMID:29461467
Characterization of viral RNA splicing using whole-transcriptome datasets from host species. PMID:29459752
Global DNA Methylation in the Chestnut Blight Fungus Cryphonectria parasitica and Genome-Wide Changes in DNA Methylation Accompanied with Sectorization. PMID:29456549
Structural Characterization and Directed Evolution of a Novel Acetyl Xylan Esterase Reveals Thermostability Determinants of the Carbohydrate Esterase 7 Family. PMID:29453256
Structural properties of the linkers connecting the N- and C- terminal domains in the MocR bacterial transcriptional regulators. PMID:29450126
Cloning and expression of an endoglucanase gene from the thermotolerant fungus Aspergillus fumigatus DBiNU-1 in Kluyveromyces lactis. PMID:29449177
The 38K-Mediated Specific Dephosphorylation of the Viral Core Protein P6.9 Plays an Important Role in the Nucleocapsid Assembly of Autographa californica Multiple Nucleopolyhedrovirus. PMID:29444944
Genetic Suppression of Basement Membrane Defects in Caenorhabditis elegans by Gain of Function in Extracellular Matrix and Cell-Matrix Attachment Genes. PMID:29440357
Complete Genome Sequence of Cluster J Mycobacteriophage Superphikiman. PMID:29437101
Identification of the WRKY gene family and functional analysis of two genes in Caragana intermedia. PMID:29426284
A DP-like transcription factor protein interacts with E2fl1 to regulate meiosis in Tetrahymena thermophila. PMID:29417875
Genome-Wide Identification and Expression Analysis of the KUP Family under Abiotic Stress in Cassava (Manihot esculenta Crantz). PMID:29416511
A new approach for detecting adventitious viruses shows Sf-rhabdovirus-negative Sf-RVN cells are suitable for safe biologicals production. PMID:29415704
Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia. PMID:29410487
The Novel Phages phiCD5763 and phiCD2955 Represent Two Groups of Big Plasmidial Siphoviridae Phages of Clostridium difficile. PMID:29403466
Modulation of Host Learning in Aedes aegypti Mosquitoes. PMID:29395917
A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae). PMID:29386578
Stop codon readthrough generates a C-terminally extended variant of the human vitamin D receptor with reduced calcitriol response. PMID:29386352
Survival of Anaerobic Fe2+ Stress Requires the ClpXP Protease. PMID:29378887
The genome of the Hi5 germ cell line from Trichoplusia ni, an agricultural pest and novel model for small RNA biology. PMID:29376823
Computational Redesign of Acyl-ACP Thioesterase with Improved Selectivity toward Medium-Chain-Length Fatty Acids. PMID:29375928
Tomato Apical Leaf Curl Virus: A Novel, Monopartite Geminivirus Detected in Tomatoes in Argentina. PMID:29375528
Quantitative Proteomic Analysis of Four Developmental Stages of Saprolegnia parasitica. PMID:29375523
In Vitro and in Silico Evidence of Phosphatase Diversity in the Biomineralizing Bacterium Ramlibacter tataouinensis. PMID:29375498
Identification of the group IIa WRKY subfamily and the functional analysis of GhWRKY17 in upland cotton (Gossypium hirsutum L.). PMID:29370286
Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes. PMID:29370083
Chitinase Chi1 from Myceliophthora thermophila C1, a Thermostable Enzyme for Chitin and Chitosan Depolymerization. PMID:29359934
Screening and Genomic Characterization of Filamentous Hemagglutinin-Deficient Bordetella pertussis. PMID:29358336
Discovery of Culex pipiens associated tunisia virus: a new ssRNA(+) virus representing a new insect associated virus family. PMID:29340209
Clostridium sordellii Pathogenicity Locus Plasmid pCS1-1 Encodes a Novel Clostridial Conjugation Locus. PMID:29339424
Genome-wide identification and characterization of SPL transcription factor family and their evolution and expression profiling analysis in cotton. PMID:29335584
The genome sequence of the commercially cultivated mushroom Agrocybe aegerita reveals a conserved repertoire of fruiting-related genes and a versatile suite of biopolymer-degrading enzymes. PMID:29334897
Integrative View of the Diversity and Evolution of SWEET and SemiSWEET Sugar Transporters. PMID:29326750
Characterization of Conserved and Novel Septal Factors in Mycobacterium smegmatis. PMID:29311277
Genomics of Clostridium taeniosporum, an organism which forms endospores with ribbon-like appendages. PMID:29293521
Structural, expression and evolutionary analysis of the non-specific phospholipase C gene family in Gossypium hirsutum. PMID:29258435
Induced-Decay of Glycine Decarboxylase Transcripts as an Anticancer Therapeutic Strategy for Non-Small-Cell Lung Carcinoma. PMID:29246305
3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures. PMID:29244774
A Novel TetR Family Transcriptional Regulator, CalR3, Negatively Controls Calcimycin Biosynthesis in Streptomyces chartreusis NRRL 3882. PMID:29238338
Diversification of Type VI Secretion System Toxins Reveals Ancient Antagonism among Bee Gut Microbes. PMID:29233893
What matters in chronic Burkholderia cenocepacia infection in cystic fibrosis: Insights from comparative genomics. PMID:29228063
Transcriptional profiling of sugarcane leaves and roots under progressive osmotic stress reveals a regulated coordination of gene expression in a spatiotemporal manner. PMID:29228055
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community. PMID:29220441
Genome sequencing and analysis of the first spontaneous Nanosilver resistant bacterium Proteus mirabilis strain SCDR1. PMID:29204271
Rethinking the evolution of eukaryotic metabolism: novel cellular partitioning of enzymes in stramenopiles links serine biosynthesis to glycolysis in mitochondria. PMID:29202688
Diversity-generating retroelements: natural variation, classification and evolution inferred from a large-scale genomic survey. PMID:29186518
Temporally precise single-cell-resolution optogenetics. PMID:29184208
Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes. PMID:29180615
Glycosyltransferase MDR1 assembles a dividing ring for mitochondrial proliferation comprising polyglucan nanofilaments. PMID:29180407
Rv0004 is a new essential member of the mycobacterial DNA replication machinery. PMID:29176877
Molecular cloning, in-silico characterization and functional validation of monodehydroascorbate reductase gene in Eleusine coracana. PMID:29176870
NFS1 undergoes positive selection in lung tumours and protects cells from ferroptosis. PMID:29168506
Combined genome and transcriptome sequencing to investigate the plant cell wall degrading enzyme system in the thermophilic fungus Malbranchea cinnamomea. PMID:29158777
Monobactam formation in sulfazecin by a nonribosomal peptide synthetase thioesterase. PMID:29155429
The Membrane Attack Complex/Perforin Superfamily. PMID:29145176
Comprehensive genomic analysis of the CNGC gene family in Brassica oleracea: novel insights into synteny, structures, and transcript profiles. PMID:29132315
Glutamylation Regulates Transport, Specializes Function, and Sculpts the Structure of Cilia. PMID:29129530
Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice. PMID:29123534
Genome-Wide Identification and Expression, Protein-Protein Interaction and Evolutionary Analysis of the Seed Plant-Specific BIG GRAIN and BIG GRAIN LIKE Gene Family. PMID:29118774
RefSeq: an update on prokaryotic genome annotation and curation. PMID:29112715
Draft genome sequence of a biosurfactant producing, Bacillus aquimaris strain SAMM MCC 3014 isolated from Indian Arabian coastline sea water. PMID:29109799
Increased Affinity for RNA Targets Evolved Early in Animal and Plant Dicer Lineages through Different Structural Mechanisms. PMID:29106606
A Journey across Genomes Uncovers the Origin of Ubiquinone in Cyanobacteria. PMID:29106540
Identification of Trans-4-Hydroxy-L-Proline as a Compatible Solute and Its Biosynthesis and Molecular Characterization in Halobacillus halophilus. PMID:29104571
In Vivo Study of the Sorbicillinoid Gene Cluster in Trichoderma reesei. PMID:29104566
Genomic structural variation-mediated allelic suppression causes hybrid male sterility in rice. PMID:29101356
Genome-wide analysis of the cellulose synthase-like (Csl) gene family in bread wheat (Triticum aestivum L.). PMID:29100539
Peripheral blood vessels are a niche for blood-borne meningococci. PMID:29099305
The MAPKKK gene family in cassava: Genome-wide identification and expression analysis against drought stress. PMID:29097722
Molecular Insight into the Acryloyl-CoA Hydration by AcuH for Acrylate Detoxification in Dimethylsulfoniopropionate-Catabolizing Bacteria. PMID:29089943
Gene Acquisition by a Distinct Phyletic Group within Streptococcus pneumoniae Promotes Adhesion to the Ocular Epithelium. PMID:29085912
A deeper mining on the protein composition of VA-MENGOC-BC®: An OMV-based vaccine against N. meningitidis serogroup B and C. PMID:29083947
Staphylococcus edaphicus sp. nov., Isolated in Antarctica, Harbors the mecC Gene and Genomic Islands with a Suspected Role in Adaptation to Extreme Environments. PMID:29079617
Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti. PMID:29078296
Complete Genome Sequence of Alteromonas Virus vB_AspP-H4/4. PMID:29074645
Engineering the Enantioselectivity and Thermostability of a (+)-γ-Lactamase from Microbacterium hydrocarbonoxydans for Kinetic Resolution of Vince Lactam (2-Azabicyclo[2.2.1]hept-5-en-3-one). PMID:29054871
The proposed new species, cacao red vein virus, and three previously recognized badnavirus species are associated with cacao swollen shoot disease. PMID:29052506
The first characterized phage against a member of the ecologically important sphingomonads reveals high dissimilarity against all other known phages. PMID:29051555
A Horizontally Transferred Autonomous Helitron Became a Full Polydnavirus Segment in Cotesia vestalis. PMID:29042411
The major outer sheath protein forms distinct conformers and multimeric complexes in the outer membrane and periplasm of Treponema denticola. PMID:29038532
ASXL gain-of-function truncation mutants: defective and dysregulated forms of a natural ribosomal frameshifting product? PMID:29037253
Impaired Magnesium Protoporphyrin IX Methyltransferase (ChlM) Impedes Chlorophyll Synthesis and Plant Growth in Rice. PMID:29033966
Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria. PMID:29027997
Carbohydrate-active enzymes in Trichoderma harzianum: a bioinformatic analysis bioprospecting for key enzymes for the biofuels industry. PMID:29025413
A novel bacteriocin from Enterococcus faecalis 478 exhibits a potent activity against vancomycin-resistant enterococci. PMID:29023515
Extreme Deviations from Expected Evolutionary Rates in Archaeal Protein Families. PMID:28985292
Probing the origins of metazoan formin diversity: Evidence for evolutionary relationships between metazoan and non-metazoan formin subtypes. PMID:28982189
Detection of 224 candidate structured RNAs by comparative analysis of specific subsets of intergenic regions. PMID:28977401
Biochemical efficacy, molecular docking and inhibitory effect of 2, 3-dimethylmaleic anhydride on insect acetylcholinesterase. PMID:28970561
EUF1 - a newly identified gene involved in erythritol utilization in Yarrowia lipolytica. PMID:28970528
Evolution of Sphingomonad Gene Clusters Related to Pesticide Catabolism Revealed by Genome Sequence and Mobilomics of Sphingobium herbicidovorans MH. PMID:28961970
The feruloyl esterase genes are required for full pathogenicity of the apple tree canker pathogen Valsa mali. PMID:28960871
Mutation of the cyclic di-GMP phosphodiesterase gene in Burkholderia lata SK875 attenuates virulence and enhances biofilm formation. PMID:28956352
Global Survey and Genome Exploration of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus. PMID:28955321
The LacI-Family Transcription Factor, RbsR, Is a Pleiotropic Regulator of Motility, Virulence, Siderophore and Antibiotic Production, Gas Vesicle Morphogenesis and Flotation in Serratia. PMID:28955306
A Novel Multifunctional β-N-Acetylhexosaminidase Revealed through Metagenomics of an Oil-Spilled Mangrove. PMID:28952541
Both modular and single-domain Type I polyketide synthases are expressed in the brevetoxin-producing dinoflagellate, Karenia brevis (Dinophyceae). PMID:28949419
Characterization of Posa and Posa-like virus genomes in fecal samples from humans, pigs, rats, and bats collected from a single location in Vietnam. PMID:28948041
Toward the identification of a type I toxin-antitoxin system in the plasmid DNA of dairy Lactobacillus rhamnosus. PMID:28935987
A single Danio rerio hars gene encodes both cytoplasmic and mitochondrial histidyl-tRNA synthetases. PMID:28934368
The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes. PMID:28928211
Genome-wide identification of the MADS-box transcription factor family in pear (Pyrus bretschneideri) reveals evolution and functional divergence. PMID:28924499
Biology and Genomics of an Historic Therapeutic Escherichia coli Bacteriophage Collection. PMID:28912765
In-silico analysis of cis-acting regulatory elements of pathogenesis-related proteins of Arabidopsis thaliana and Oryza sativa. PMID:28910327
Identification of a mouse Lactobacillus johnsonii strain with deconjugase activity against the FXR antagonist T-β-MCA. PMID:28910295
YeeJ is an inverse autotransporter from Escherichia coli that binds to peptidoglycan and promotes biofilm formation. PMID:28900103
N-terminomics identifies widespread endoproteolysis and novel methionine excision in a genome-reduced bacterial pathogen. PMID:28894154
Molecular details of secretory phospholipase A2 from flax (Linum usitatissimum L.) provide insight into its structure and function. PMID:28894144
p190RhoGAP proteins contain pseudoGTPase domains. PMID:28894085
Evidence-based gene models for structural and functional annotations of the oil palm genome. PMID:28886750
Computational genome-wide survey of odorant receptors from two solitary bees Dufourea novaeangliae (Hymenoptera: Halictidae) and Habropoda laboriosa (Hymenoptera: Apidae). PMID:28883425
Methanosarcina Spherical Virus, a Novel Archaeal Lytic Virus Targeting Methanosarcina Strains. PMID:28878086
Genome Characterization of Oleaginous Aspergillus oryzae BCC7051: A Potential Fungal-Based Platform for Lipid Production. PMID:28865010
A prophage tail-like protein is deployed by Burkholderia bacteria to feed on fungi. PMID:28864820
Plasticity first: molecular signatures of a complex morphological trait in filamentous cyanobacteria. PMID:28859625
Whole-Genome Sequence of the Anaerobic Isosaccharinic Acid Degrading Isolate, Macellibacteroides fermentans Strain HH-ZS. PMID:28859355
Contrasting Patterns of Nucleotide Substitution Rates Provide Insight into Dynamic Evolution of Plastid and Mitochondrial Genomes of Geranium. PMID:28854633
A proteomic portrait of dinoflagellate chromatin reveals abundant RNA-binding proteins. PMID:28852823
Comparative molecular analyses of select pH- and osmoregulatory genes in three freshwater crayfish Cherax quadricarinatus, C. destructor and C. cainii. PMID:28852583
The core regulatory network of the abscisic acid pathway in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress. PMID:28851274
Expression analysis of the Arabidopsis thaliana AtSpen2 gene, and its relationship with other plant genes encoding Spen proteins. PMID:28850635
The Treponema pallidum Outer Membrane. PMID:28849315
Two Negative-Strand RNA Viruses Identified in Watermelon Represent a Novel Clade in the Order Bunyavirales. PMID:28848524
PaperBLAST: Text Mining Papers for Information about Homologs. PMID:28845458
Cushing's syndrome secondary to typical pulmonary carcinoid with mutation in BCOR gene: A case report. PMID:28834902
Influence of CNTRENE® C100LM carbon nanotube material on the growth and regulation of Escherichia coli. PMID:28828284
Characterization of a novel class A carbapenemase PAD-1 from Paramesorhizobium desertii A-3-ET, a strain highly resistant to β-lactam antibiotics. PMID:28827656
Genomic analysis of methanogenic archaea reveals a shift towards energy conservation. PMID:28826405
Differential alternative splicing coupled to nonsense-mediated decay of mRNA ensures dietary restriction-induced longevity. PMID:28824175
Evolutionary analysis of a novel zinc ribbon in the N-terminal region of threonine synthase. PMID:28820334
Fruit weight is controlled by Cell Size Regulator encoding a novel protein that is expressed in maturing tomato fruits. PMID:28817560
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation. PMID:28814974
Transcriptomic analysis of nickel exposure in Sphingobium sp. ba1 cells using RNA-seq. PMID:28811613
Exploring Protein-Protein Interactions as Drug Targets for Anti-cancer Therapy with In Silico Workflows. PMID:28809006
ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology. PMID:28808136
Syntrophomonas wolfei Uses an NADH-Dependent, Ferredoxin-Independent [FeFe]-Hydrogenase To Reoxidize NADH. PMID:28802265
Sialotranscriptomics of Rhipicephalus zambeziensis reveals intricate expression profiles of secretory proteins and suggests tight temporal transcriptional regulation during blood-feeding. PMID:28797301
Structure and application of antifreeze proteins from Antarctic bacteria. PMID:28784139
Virome comparisons in wild-diseased and healthy captive giant pandas. PMID:28780905
Indole Biodegradation in Acinetobacter sp. Strain O153: Genetic and Biochemical Characterization. PMID:28778892
Contribution of increased mutagenesis to the evolution of pollutants-degrading indigenous bacteria. PMID:28777807
Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill. PMID:28777379
Variations of five eIF4E genes across cassava accessions exhibiting tolerant and susceptible responses to cassava brown streak disease. PMID:28771520
The genome of the cotton bacterial blight pathogen Xanthomonas citri pv. malvacearum strain MSCT1. PMID:28770027
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution. PMID:28756775
BrEPS 2.0: Optimization of sequence pattern prediction for enzyme annotation. PMID:28750104
The Physiological Functions and Structural Determinants of Catalytic Bias in the [FeFe]-Hydrogenases CpI and CpII of Clostridium pasteurianum Strain W5. PMID:28747909
Genome-wide comparative analysis of putative Pth11-related G protein-coupled receptors in fungi belonging to Pezizomycotina. PMID:28743231
Amblyomma maculatum SECIS binding protein 2 and putative selenoprotein P are indispensable for pathogen replication and tick fecundity. PMID:28739494
An Update on Jacalin-Like Lectins and Their Role in Plant Defense. PMID:28737678
Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation. PMID:28731473
Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology. PMID:28731469
Transcriptome wide identification and characterization of starch branching enzyme in finger millet. PMID:28729759
Overexpression of the OsIMP Gene Increases the Accumulation of Inositol and Confers Enhanced Cold Tolerance in Tobacco through Modulation of the Antioxidant Enzymes' Activities. PMID:28726715
Physiological, Biochemical, Epigenetic and Molecular Analyses of Wheat (Triticum aestivum) Genotypes with Contrasting Salt Tolerance. PMID:28713411
Outer Membrane Proteome of Veillonella parvula: A Diderm Firmicute of the Human Microbiome. PMID:28713344
UCSF ChimeraX: Meeting modern challenges in visualization and analysis. PMID:28710774
Generic amplification and next generation sequencing reveal Crimean-Congo hemorrhagic fever virus AP92-like strain and distinct tick phleboviruses in Anatolia, Turkey. PMID:28705183
Serotype-specific role of antigen I/II in the initial steps of the pathogenesis of the infection caused by Streptococcus suis. PMID:28705175
Molecular adaptation to high pressure in cytochrome P450 1A and aryl hydrocarbon receptor systems of the deep-sea fish Coryphaenoides armatus. PMID:28694077
Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton. PMID:28693426
A Plastid Phosphatidylglycerol Lipase Contributes to the Export of Acyl Groups from Plastids for Seed Oil Biosynthesis. PMID:28687655
Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response. PMID:28687067
Genome-wide survey of heat shock factors and heat shock protein 70s and their regulatory network under abiotic stresses in Brachypodium distachyon. PMID:28683139
Genome-wide identification of pistil-specific genes expressed during fruit set initiation in tomato (Solanum lycopersicum). PMID:28683065
A new strategy for aromatic ring alkylation in cylindrocyclophane biosynthesis. PMID:28671684
Discovery of Lysine Hydroxylases in the Clavaminic Acid Synthase-Like Superfamily for Efficient Hydroxylysine Bioproduction. PMID:28667106
Six-Rowed Spike3 (VRS3) Is a Histone Demethylase That Controls Lateral Spikelet Development in Barley. PMID:28655778
Identification and characterization of AckA-dependent protein acetylation in Neisseria gonorrhoeae. PMID:28654654
Characterization of a novel two-component Na+(Li+, K+)/H+ antiporter from Halomonas zhaodongensis. PMID:28652569
Analysis of the ZAR1 Immune Complex Reveals Determinants for Immunity and Molecular Interactions. PMID:28652264
Allele specific CAPS marker development and characterization of chalcone synthase gene in Indian mulberry (Morus spp., family Moraceae). PMID:28640826
The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses. PMID:28634470
Evolution of miRNA Tailing by 3' Terminal Uridylyl Transferases in Metazoa. PMID:28633361
BRUTUS and its paralogs, BTS LIKE1 and BTS LIKE2, encode important negative regulators of the iron deficiency response in Arabidopsis thaliana. PMID:28620661
Superior long-term synaptic memory induced by combining dual pharmacological activation of PKA and ERK with an enhanced training protocol. PMID:28620076
Streptococcus pyogenes quinolinate-salvage pathway-structural and functional studies of quinolinate phosphoribosyl transferase and NH3 -dependent NAD+ synthetase. PMID:28618168
The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa. PMID:28616073
De novo transcriptomic analysis and development of EST-SSRs for Sorbus pohuashanensis (Hance) Hedl. PMID:28614366
Adaptations to High Salt in a Halophilic Protist: Differential Expression and Gene Acquisitions through Duplications and Gene Transfers. PMID:28611746
RNAseq Reveals Complex Response of Campylobacter jejuni to Ovine Bile and In vivo Gallbladder Environment. PMID:28611744
Hippocampal Characteristics and Invariant Sequence Elements Distribution of GLRA2 and GLRA3 C-to-U Editing. PMID:28611548
A loss of Pdxk model of Parkinson disease in Drosophila can be suppressed by Buffy. PMID:28606139
Microsomal triglyceride transfer protein in the ectoparasitic crustacean salmon louse (Lepeophtheirus salmonis). PMID:28601811
Repeated losses of PRDM9-directed recombination despite the conservation of PRDM9 across vertebrates. PMID:28590247
Novel Marfan Syndrome-Associated Mutation in the FBN1 Gene Caused by Parental Mosaicism and Leading to Abnormal Limb Patterning. PMID:28588436
PA3225 Is a Transcriptional Repressor of Antibiotic Resistance Mechanisms in Pseudomonas aeruginosa. PMID:28584154
Comprehensive classification of the PIN domain-like superfamily. PMID:28575517
φBO1E, a newly discovered lytic bacteriophage targeting carbapenemase-producing Klebsiella pneumoniae of the pandemic Clonal Group 258 clade II lineage. PMID:28572684
Metabolic network analysis reveals microbial community interactions in anammox granules. PMID:28561030
Three classes of oxygen-dependent cyclase involved in chlorophyll and bacteriochlorophyll biosynthesis. PMID:28559347
Watasemycin biosynthesis in Streptomyces venezuelae: thiazoline C-methylation by a type B radical-SAM methylase homologue. PMID:28553520
A tripeptidyl peptidase 1 is a binding partner of the Golgi pH regulator (GPHR) in Dictyostelium. PMID:28546289
The complex domain architecture of SAMD9 family proteins, predicted STAND-like NTPases, suggests new links to inflammation and apoptosis. PMID:28545555
Identification of Enterococcus faecalis enzymes with azoreductases and/or nitroreductase activity. PMID:28545445
Identification and expression analysis of starch branching enzymes involved in starch synthesis during the development of chestnut (Castanea mollissima Blume) cotyledons. PMID:28542293
Improved Annotations of 23 Differentially Expressed Hypothetical Proteins in Methicillin Resistant S.aureus. PMID:28539731
Characterization of the Adult Head Transcriptome and Identification of Migration and Olfaction Genes in the Oriental Armyworm Mythimna separate. PMID:28539591
[Expression, purification and activity analysis of GGDEF and EAL domain-containing proteins from Lactobacillus acidophilus]. PMID:28539286
Whole-Genome Identification and Expression Pattern of the Vicinal Oxygen Chelate Family in Rapeseed (Brassica napus L.). PMID:28536594
Novel highly divergent sapoviruses detected by metagenomics analysis in straw-colored fruit bats in Cameroon. PMID:28536431
TC003132 is essential for the follicle stem cell lineage in telotrophic Tribolium oogenesis. PMID:28533810
Draft Genome Sequence of Roseovarius sp. A-2, an Iodide-Oxidizing Bacterium Isolated from Natural Gas Brine Water, Chiba, Japan. PMID:28529651
Computational Exploration of Putative LuxR Solos in Archaea and Their Functional Implications in Quorum Sensing. PMID:28515720
Characterization of a secretory hydrolase from Mycobacterium tuberculosis sheds critical insight into host lipid utilization by M. tuberculosis. PMID:28515317
A Diverse Range of Novel RNA Viruses in Geographically Distinct Honey Bee Populations. PMID:28515299
Analysis of CFB, a cytokinin-responsive gene of Arabidopsis thaliana encoding a novel F-box protein regulating sterol biosynthesis. PMID:28505379
The planarian TRPA1 homolog mediates extraocular behavioral responses to near-ultraviolet light. PMID:28495872
Comparative genomic study of ALDH gene superfamily in Gossypium: A focus on Gossypium hirsutum under salt stress. PMID:28489898
Evolution of sex-dependent mtDNA transmission in freshwater mussels (Bivalvia: Unionida). PMID:28484275
Signatures of cytoplasmic proteins in the exoproteome distinguish community- and hospital-associated methicillin-resistant Staphylococcus aureus USA300 lineages. PMID:28475476
Molecular identification of transmembrane protein 68 as an endoplasmic reticulum-anchored and brain-specific protein. PMID:28472192
Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda. PMID:28460028
Recent Sex Chromosome Divergence despite Ancient Dioecy in the Willow Salix viminalis. PMID:28453634
Genome-wide analysis of autophagy-related genes in banana highlights MaATG8s in cell death and autophagy in immune response to Fusarium wilt. PMID:28451821
Characterization of Carboxylic Acid Reductases as Enzymes in the Toolbox for Synthetic Chemistry. PMID:28450969
Pan-Genomic Analysis Permits Differentiation of Virulent and Non-virulent Strains of Xanthomonas arboricola That Cohabit Prunus spp. and Elucidate Bacterial Virulence Factors. PMID:28450852
O-Linked N-acetylglucosamine transferase 1 regulates global histone H4 acetylation via stabilization of the nonspecific lethal protein NSL3. PMID:28450392
Characterization and expression analysis of Galnts in developing Strongylocentrotus purpuratus embryos. PMID:28448610
Shh-mediated centrosomal recruitment of PKA promotes symmetric proliferative neuroepithelial cell division. PMID:28446817
Evolution of the 3R-MYB Gene Family in Plants. PMID:28444194
Genome Wide Identification and Characterization of Apple bHLH Transcription Factors and Expression Analysis in Response to Drought and Salt Stress. PMID:28443104
Metabolic control of primed human pluripotent stem cell fate and function by the miR-200c-SIRT2 axis. PMID:28436968
The identification of protein domains that mediate functional interactions between Rab-GTPases and RabGAPs using 3D protein modeling. PMID:28435300
In-Silico Drug discovery approach targeting receptor tyrosine kinase-like orphan receptor 1 for cancer treatment. PMID:28432357
Arsenic metabolism in high altitude modern stromatolites revealed by metagenomic analysis. PMID:28432307
Somatic transposition and meiotically driven elimination of an active helitron family in Pleurotus ostreatus. PMID:28431016
Noumeavirus replication relies on a transient remote control of the host nucleus. PMID:28429720
Genome Sequences of Cluster K Mycobacteriophages DrHayes, Urkel, and SamuelLPlaqson. PMID:28428316
The crystal structure of Erwinia amylovora AmyR, a member of the YbjN protein family, shows similarity to type III secretion chaperones but suggests different cellular functions. PMID:28426806
Responses of the Housefly, Musca domestica, to the Hytrosavirus Replication: Impacts on Host's Vitellogenesis and Immunity. PMID:28424677
RNA-Seq Validation of RNAi Identifies Additional Gene Connectivity in Tribolium castaneum (Coleoptera: Tenebrionidae). PMID:28423418
Structure and characterization of a class 3B proline utilization A: Ligand-induced dimerization and importance of the C-terminal domain for catalysis. PMID:28420730
Molecular and biochemical characterization of recombinant cel12B, cel8C, and peh28 overexpressed in Escherichia coli and their potential in biofuel production. PMID:28413443
An Extracellular Cell-Attached Pullulanase Confers Branched α-Glucan Utilization in Human Gut Lactobacillus acidophilus. PMID:28411221
Staphylococcus sciuri bacteriophages double-convert for staphylokinase and phospholipase, mediate interspecies plasmid transduction, and package mecA gene. PMID:28406168
sRNAs as possible regulators of retrotransposon activity in Cryptococcus gattii VGII. PMID:28403818
SAGA complex mediates the transcriptional up-regulation of antiviral RNA silencing. PMID:28400515
Transcriptomic buffering of cryptic genetic variation contributes to meningococcal virulence. PMID:28388876
Molecular Evolutionary Constraints that Determine the Avirulence State of Clostridium botulinum C2 Toxin. PMID:28382496
A UPF0118 family protein with uncharacterized function from the moderate halophile Halobacillus andaensis represents a novel class of Na+(Li+)/H+ antiporter. PMID:28374790
A Salmonella Regulator Modulates Intestinal Colonization and Use of Phosphonoacetic Acid. PMID:28361036
Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase. PMID:28356077
The electrically conductive pili of Geobacter species are a recently evolved feature for extracellular electron transfer. PMID:28348867
Identification and comparative analysis of the epidermal differentiation complex in snakes. PMID:28345630
In silico functional elucidation of uncharacterized proteins of Chlamydia abortus strain LLG. PMID:28344832
Schizosaccharomyces pombe rsv1 Transcription Factor and its Putative Homologues Preserved their Functional Homology and are Evolutionarily Conserved. PMID:28342076
Highly diverse population of Picornaviridae and other members of the Picornavirales, in Cameroonian fruit bats. PMID:28335731
Transcriptomic Complexity of Aspergillus terreus Velvet Gene Family under the Influence of Butyrolactone I. PMID:28335447
APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins. PMID:28334975
A pseudaminic acid or a legionaminic acid derivative transferase is strain-specifically implicated in the general protein O-glycosylation system of the periodontal pathogen Tannerella forsythia. PMID:28334934
Convergence of Domain Architecture, Structure, and Ligand Affinity in Animal and Plant RNA-Binding Proteins. PMID:28333205
The rare sugar N-acetylated viosamine is a major component of Mimivirus fibers. PMID:28314774
Transcriptomic Analyses Elucidate Adaptive Differences of Closely Related Strains of Pseudomonas aeruginosa in Fuel. PMID:28314727
Convergence of retrotransposons in oomycetes and plants. PMID:28293305
Transcriptome-Wide Identification, Classification, and Characterization of AP2/ERF Family Genes in the Desert Moss Syntrichia caninervis. PMID:28289426
High-throughput sequencing reveals circular substrates for an archaeal RNA ligase. PMID:28277897
Characterization of TPP-binding proteins in Methanococci archaeal species. PMID:28275290
Novel methicillin resistance gene mecD in clinical Macrococcus caseolyticus strains from bovine and canine sources. PMID:28272476
Bioinformatic analysis of riboswitch structures uncovers variant classes with altered ligand specificity. PMID:28265071
Enhanced Binding Affinity for an i-Motif DNA Substrate Exhibited by a Protein Containing Nucleobase Amino Acids. PMID:28263595
Functional and comparative genome analysis of novel virulent actinophages belonging to Streptomyces flavovirens. PMID:28257628
Phosphotyrosine phosphatase R3 receptors: Origin, evolution and structural diversification. PMID:28257417
Draft Genome Sequence of Bacillus licheniformis Strain YNP1-TSU Isolated from Whiterock Springs in Yellowstone National Park. PMID:28254968
Simple discovery of bacterial biocatalysts from environmental samples through functional metaproteomics. PMID:28253936
Bax-inhibitor-1 knockdown phenotypes are suppressed by Buffy and exacerbate degeneration in a Drosophila model of Parkinson disease. PMID:28243526
Metacaspases versus caspases in development and cell fate regulation. PMID:28234356
Recurrent rearrangements of the Myb/SANT-like DNA-binding domain containing 3 gene (MSANTD3) in salivary gland acinic cell carcinoma. PMID:28212443
A tool named Iris for versatile high-throughput phenotyping in microorganisms. PMID:28211844
Discovery of a new family of relaxases in Firmicutes bacteria. PMID:28207825
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis. PMID:28207813
A familial study of azoospermic men identifies three novel causative mutations in three new human azoospermia genes. PMID:28206990
Prediction driven functional annotation of hypothetical proteins in the major facilitator superfamily of S. aureus NCTC 8325. PMID:28197063
Structure and function of HWE/HisKA2-family sensor histidine kinases. PMID:28193573
Annotating Mutational Effects on Proteins and Protein Interactions: Designing Novel and Revisiting Existing Protocols. PMID:28188534
Clathrin in Chara australis: Molecular Analysis and Involvement in Charasome Degradation and Constitutive Endocytosis. PMID:28184226
The evolution of the natural killer complex; a comparison between mammals using new high-quality genome assemblies and targeted annotation. PMID:28180967
The Borrelia burgdorferi telomere resolvase, ResT, possesses ATP-dependent DNA unwinding activity. PMID:28180323
The complex evolutionary history of aminoacyl-tRNA synthetases. PMID:28180287
Genome-Wide Identification and Characterization of SPX Domain-Containing Members and Their Responses to Phosphate Deficiency in Brassica napus. PMID:28179909
Asparagine-Linked Glycans of Cryptosporidium parvum Contain a Single Long Arm, Are Barely Processed in the Endoplasmic Reticulum (ER) or Golgi, and Show a Strong Bias for Sites with Threonine. PMID:28179475
Parallel N- and C-Terminal Truncations Facilitate Purification and Analysis of a 155-kDa Cold-Adapted Type-I Pullulanase. PMID:28176135
Complete genome sequence of Pseudoalteromonas phage vB_PspS-H40/1 (formerly H40/1) that infects Pseudoalteromonas sp. strain H40 and is used as biological tracer in hydrological transport studies. PMID:28168014
The History of Bordetella pertussis Genome Evolution Includes Structural Rearrangement. PMID:28167525
A New Essential Cell Division Protein in Caulobacter crescentus. PMID:28167520
Draft genome sequence of Lactobacillus plantarum strains E2C2 and E2C5 isolated from human stool culture. PMID:28163824
Molecular Architecture of the Major Membrane Ring Component of the Nuclear Pore Complex. PMID:28162953
Reverse Methanogenesis and Respiration in Methanotrophic Archaea. PMID:28154498
Statoviruses, A novel taxon of RNA viruses present in the gastrointestinal tracts of diverse mammals. PMID:28152382
Comparative analysis of sterol acquisition in the oomycetes Saprolegnia parasitica and Phytophthora infestans. PMID:28152045
Predictive characterization of hypothetical proteins in Staphylococcus aureus NCTC 8325. PMID:28149057
A non-canonical peptide synthetase adenylates 3-methyl-2-oxovaleric acid for auriculamide biosynthesis. PMID:28144348
Single polysaccharide assembly protein that integrates polymerization, termination, and chain-length quality control. PMID:28137848
Enhanced transcriptomic responses in the Pacific salmon louse Lepeophtheirus salmonis oncorhynchi to the non-native Atlantic Salmon Salmo salar suggests increased parasite fitness. PMID:28137252
Calpain-14 and its association with eosinophilic esophagitis. PMID:28131390
Accessing the genomic information of unculturable oceanic picoeukaryotes by combining multiple single cells. PMID:28128359
A Lin28 homologue reprograms differentiated cells to stem cells in the moss Physcomitrella patens. PMID:28128346
Transport capabilities of environmental Pseudomonads for sulfur compounds. PMID:28127814
A comparative in-silico analysis of autophagy proteins in ciliates. PMID:28123910
A fungal wheat pathogen evolved host specialization by extensive chromosomal rearrangements. PMID:28117833
From a Natural Product to Its Biosynthetic Gene Cluster: A Demonstration Using Polyketomycin from Streptomyces diastatochromogenes Tü6028. PMID:28117820
Independent active and thermodynamic processes govern the nucleolus assembly in vivo. PMID:28115706
Studies on the Virome of the Entomopathogenic Fungus Beauveria bassiana Reveal Novel dsRNA Elements and Mild Hypervirulence. PMID:28114361
Insight into the essential role of the Helicobacter pylori HP1043 orphan response regulator: genome-wide identification and characterization of the DNA-binding sites. PMID:28112213
Computer aided identification of a Hevein-like antimicrobial peptide of bell pepper leaves for biotechnological use. PMID:28105928
The Goddard and Saturn Genes Are Essential for Drosophila Male Fertility and May Have Arisen De Novo. PMID:28104747
miRNAs Do Not Regulate Circadian Protein Synthesis in the Dinoflagellate Lingulodinium polyedrum. PMID:28103286
Antisense transcription of the myotonic dystrophy locus yields low-abundant RNAs with and without (CAG)n repeat. PMID:28102759
The Tetraspanin-Associated Uroplakins Family (UPK2/3) Is Evolutionarily Related to PTPRQ, a Phosphotyrosine Phosphatase Receptor. PMID:28099513
Myosin-driven transport network in plants. PMID:28096376
Metagenomic insights into effects of spent engine oil perturbation on the microbial community composition and function in a tropical agricultural soil. PMID:28093673
The Aspergillus nidulans Pbp1 homolog is required for normal sexual development and secondary metabolism. PMID:28089630
Finding Biomass Degrading Enzymes Through an Activity-Correlated Quantitative Proteomics Platform (ACPP). PMID:28083757
Direct Heme Uptake by Phytoplankton-Associated Roseobacter Bacteria. PMID:28083564
julius seizure, a Drosophila Mutant, Defines a Neuronal Population Underlying Epileptogenesis. PMID:28082408
Discovery of flavivirus-derived endogenous viral elements in Anopheles mosquito genomes supports the existence of Anopheles-associated insect-specific flaviviruses. PMID:28078104
Complete genome sequence of Lutibacter profundi LP1T isolated from an Arctic deep-sea hydrothermal vent system. PMID:28078050
Asgard archaea illuminate the origin of eukaryotic cellular complexity. PMID:28077874
The essential requirement of an animal heme peroxidase protein during the wing maturation process in Drosophila. PMID:28077066
Transcription factor Xpp1 is a switch between primary and secondary fungal metabolism. PMID:28074041
Burkholderia contaminans Biofilm Regulating Operon and Its Distribution in Bacterial Genomes. PMID:28070515
ArtA-Dependent Processing of a Tat Substrate Containing a Conserved Tripartite Structure That Is Not Localized at the C Terminus. PMID:28069824
A next-generation microarray further reveals stage-enriched gene expression pattern in the blood fluke Schistosoma japonicum. PMID:28069074
Plant genome and transcriptome annotations: from misconceptions to simple solutions. PMID:28062412
The driving force of prophages and CRISPR-Cas system in the evolution of Cronobacter sakazakii. PMID:28057934
Satellite DNA and Transposable Elements in Seabuckthorn (Hippophae rhamnoides), a Dioecious Plant with Small Y and Large X Chromosomes. PMID:28057732
Comparative genomics of host adaptive traits in Xanthomonas translucens pv. graminis. PMID:28056815
Fibrinogen and Fibronectin Binding Activity and Immunogenic Nature of Choline Binding Protein M. PMID:28053927
The Papillomavirus Episteme: a major update to the papillomavirus sequence database. PMID:28053164
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes. PMID:28053160
1,2-Diacylglycerol choline phosphotransferase catalyzes the final step in the unique Treponema denticola phosphatidylcholine biosynthesis pathway. PMID:28009086
H255Y and K508R missense mutations in tumour suppressor folliculin (FLCN) promote kidney cell proliferation. PMID:28007907
Draft Whole-Genome Sequence of a Catalase-Negative Staphylococcus aureus subsp. aureus (Sequence Type 25) Strain Isolated from a Patient with Endocarditis and Septic Arthritis. PMID:28007866
Genome Sequences of a Novel Vietnamese Bat Bunyavirus. PMID:28007850
Improved pestalotiollide B production by deleting competing polyketide synthase genes in Pestalotiopsis microspora. PMID:28005187
Novel thermostable antibiotic resistance enzymes from the Atlantis II Deep Red Sea brine pool. PMID:28004885
Overexpression of phytochelatin synthase (pcs) enhances abiotic stress tolerance by altering the proteome of transformed Anabaena sp. PCC 7120. PMID:28000119
Reconstruction of Transcription Control Networks in Mollicutes by High-Throughput Identification of Promoters. PMID:27999573
Genome-Wide Analysis of Soybean JmjC Domain-Containing Proteins Suggests Evolutionary Conservation Following Whole-Genome Duplication. PMID:27994610
The bald and the beautiful: hairlessness in domestic dog breeds. PMID:27994129
Conserved ABC Transport System Regulated by the General Stress Response Pathways of Alpha- and Gammaproteobacteria. PMID:27994018
An integrated multi-omics analysis of the NK603 Roundup-tolerant GM maize reveals metabolism disturbances caused by the transformation process. PMID:27991589
Relief of autoinhibition by conformational switch explains enzyme activation by a catalytically dead paralog. PMID:27977001
Genes essential for the morphogenesis of the Shiga toxin 2-transducing phage from Escherichia coli O157:H7. PMID:27966628
Ca2+/Cation Antiporters (CaCA): Identification, Characterization and Expression Profiling in Bread Wheat (Triticum aestivum L.). PMID:27965686
Functional Characterization of Pneumocystis carinii Inositol Transporter 1. PMID:27965450
Analysis of Domain Architecture and Phylogenetics of Family 2 Glycoside Hydrolases (GH2). PMID:27930742
Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions. PMID:27927184
Susceptibility of Phytomonas serpens to calpain inhibitors in vitro: interference on the proliferation, ultrastructure, cysteine peptidase expression and interaction with the invertebrate host. PMID:27925020
OTX2 impedes self-renewal of porcine iPS cells through downregulation of NANOG expression. PMID:27924227
Carbapenemase-Producing Enterobacteriaceae Recovered from the Environment of a Swine Farrow-to-Finish Operation in the United States. PMID:27919894
The crystal structure of dihydrodipicolinate reductase from the human-pathogenic bacterium Bartonella henselae strain Houston-1 at 2.3 Å resolution. PMID:27917836
Unique attributes of cyanobacterial metabolism revealed by improved genome-scale metabolic modeling and essential gene analysis. PMID:27911809
EstDZ3: A New Esterolytic Enzyme Exhibiting Remarkable Thermostability. PMID:27899916
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. PMID:27899674
InterPro in 2017-beyond protein family and domain annotations. PMID:27899635
Diversity and Evolutionary Analysis of Iron-Containing (Type-III) Alcohol Dehydrogenases in Eukaryotes. PMID:27893862
E2fl1 is a meiosis-specific transcription factor in the protist Tetrahymena thermophila. PMID:27892792
GWAS study using DNA pooling strategy identifies association of variant rs4910623 in OR52B4 gene with anti-VEGF treatment response in age-related macular degeneration. PMID:27892514
Two novel mutations in PRPF3 causing autosomal dominant retinitis pigmentosa. PMID:27886254
Cloning, functional expression and characterization of a bifunctional 3-hydroxybutanal dehydrogenase /reductase involved in acetone metabolism by Desulfococcus biacutus. PMID:27884109
Two novel viruses associated with the Apis mellifera pathogenic mite Varroa destructor. PMID:27883042
Loss of porin function in dopaminergic neurons of Drosophila is suppressed by Buffy. PMID:27881168
Prediction of Protein-Protein Interactions by Evidence Combining Methods. PMID:27879651
An Enrichment of CRISPR and Other Defense-Related Features in Marine Sponge-Associated Microbial Metagenomes. PMID:27877161
Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses. PMID:27875982
The ERF transcription factor family in cassava: genome-wide characterization and expression analyses against drought stress. PMID:27869212
DFAST and DAGA: web-based integrated genome annotation tools and resources. PMID:27867804
A functionally conserved Zn2 Cys6 binuclear cluster transcription factor class regulates necrotrophic effector gene expression and host-specific virulence of two major Pleosporales fungal pathogens of wheat. PMID:27860150
Heat shock transcription factors in banana: genome-wide characterization and expression profile analysis during development and stress response. PMID:27857174
Draft Genome Sequence of Curtobacterium sp. Strain ER1/6, an Endophytic Strain Isolated from Citrus sinensis with Potential To Be Used as a Biocontrol Agent. PMID:27856581
γ-Aminobutyric acid (GABA) signalling in plants. PMID:27838745
Cloning and Functional Characterization of Cycloartenol Synthase from the Red Seaweed Laurencia dendroidea. PMID:27832119
Downregulation of Aedes aegypti chromodomain helicase DNA binding protein 7/Kismet by Wolbachia and its effect on dengue virus replication. PMID:27827425
Resurrecting ancestral structural dynamics of an antiviral immune receptor: adaptive binding pocket reorganization repeatedly shifts RNA preference. PMID:27825296
Antiplasmodial Activity Is an Ancient and Conserved Feature of Tick Defensins. PMID:27822206
Limited genetic diversity in the PvK12 Kelch protein in Plasmodium vivax isolates from Southeast Asia. PMID:27821166
Pyrimidine Salvage Enzymes Are Essential for De Novo Biosynthesis of Deoxypyrimidine Nucleotides in Trypanosoma brucei. PMID:27820863
Comparative Analysis of DNA Methyltransferase Gene Family in Fungi: A Focus on Basidiomycota. PMID:27818666
Mitochondrial transcription in mammalian cells. PMID:27814650
UNcleProt (Universal Nuclear Protein database of barley): The first nuclear protein database that distinguishes proteins from different phases of the cell cycle. PMID:27813701
The Role of AMPK in Drosophila melanogaster. PMID:27812989
Phylogenetic and comparative genomics of the family Leptotrichiaceae and introduction of a novel fingerprinting MLVA for Streptobacillus moniliformis. PMID:27809782
Genome-wide analysis reveals signatures of selection for important traits in domestic sheep from different ecoregions. PMID:27809776
RHO binding to FAM65A regulates Golgi reorientation during cell migration. PMID:27807006
Protein Translation Enzyme lysyl-tRNA Synthetase Presents a New Target for Drug Development against Causative Agents of Loiasis and Schistosomiasis. PMID:27806050
Quantum changes in Helicobacter pylori gene expression accompany host-adaptation. PMID:27803027
Combined genomic and structural analyses of a cultured magnetotactic bacterium reveals its niche adaptation to a dynamic environment. PMID:27801294
Tissue Microenvironments in the Nasal Epithelium of Rainbow Trout (Oncorhynchus mykiss) Define Two Distinct CD8α+ Cell Populations and Establish Regional Immunity. PMID:27798156
Biochemical and Genetic Bases of Indole-3-Acetic Acid (Auxin Phytohormone) Degradation by the Plant-Growth-Promoting Rhizobacterium Paraburkholderia phytofirmans PsJN. PMID:27795307
Pseudomonas aeruginosa Type III Secretory Toxin ExoU and Its Predicted Homologs. PMID:27792159
Characterization and Comparative Overview of Complete Sequences of the First Plasmids of Pandoraea across Clinical and Non-clinical Strains. PMID:27790203
Genomic skimming for identification of medium/highly abundant transposable elements in Arundo donax and Arundo plinii. PMID:27778102
Characterization of pneumococcal Ser/Thr protein phosphatase phpP mutant and identification of a novel PhpP substrate, putative RNA binding protein Jag. PMID:27776484
A Novel Astrovirus-Like RNA Virus Detected in Human Stool. PMID:27774298
Expanding the archaellum regulatory network - the eukaryotic protein kinases ArnC and ArnD influence motility of Sulfolobus acidocaldarius. PMID:27771939
The Ralstonia solanacearum type III effector RipAY targets plant redox regulators to suppress immune responses. PMID:27768829
The Reverse Transcriptase/RNA Maturase Protein MatR Is Required for the Splicing of Various Group II Introns in Brassicaceae Mitochondria. PMID:27760804
Conservation and divergence of bHLH genes in the calcisponge Sycon ciliatum. PMID:27757221
Structures and stabilization of kinetoplastid-specific split rRNAs revealed by comparing leishmanial and human ribosomes. PMID:27752045
Draft Genome Sequence of Arenibacter sp. Strain C-21, an Iodine-Accumulating Bacterium Isolated from Surface Marine Sediment. PMID:27738047
Huntingtin-associated protein 1: Eutherian adaptation from a TRAK-like protein, conserved gene promoter elements, and localization in the human intestine. PMID:27737633
Phylotype Dynamics of Bacterial P Utilization Genes in Microbialites and Bacterioplankton of a Monomictic Endorheic Lake. PMID:27726035
Close ecological relationship among species facilitated horizontal transfer of retrotransposons. PMID:27717306
Complete nucleotide sequence of strawberry vein banding virus Chinese isolate and infectivity of its full-length DNA clone. PMID:27716385
Genomic Dissection and Expression Profiling Revealed Functional Divergence in Triticum aestivum Leucine Rich Repeat Receptor Like Kinases (TaLRRKs). PMID:27713749
Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome. PMID:27712009
Magnaporthe oryzae Glycine-Rich Secretion Protein, Rbf1 Critically Participates in Pathogenicity through the Focal Formation of the Biotrophic Interfacial Complex. PMID:27711180
Pectins, Endopolygalacturonases, and Bioenergy. PMID:27703463
Effects of point mutations on the thermostability of B. subtilis lipase: investigating nonadditivity. PMID:27696241
Revisiting the Phylogeny of the Animal Formins: Two New Subtypes, Relationships with Multiple Wing Hairs Proteins, and a Lost Human Formin. PMID:27695129
Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids. PMID:27694983
A proteinaceous organic matrix regulates carbonate mineral production in the marine teleost intestine. PMID:27694946
Global transcriptional regulator TrmB family members in prokaryotes. PMID:27687225
Interaction between RNA helicase ROOT INITIATION DEFECTIVE 1 and GAMETOPHYTIC FACTOR 1 is involved in female gametophyte development in Arabidopsis. PMID:27683728
Genome-wide identification of multifunctional laccase gene family in cotton (Gossypium spp.); expression and biochemical analysis during fiber development. PMID:27679939
A Natural Mutation Involving both Pathogenicity and Perithecium Formation in the Fusarium graminearum Species Complex. PMID:27678518
Bcl-2 homologue Debcl enhances α-synuclein-induced phenotypes in Drosophila. PMID:27672511
Characterization of new transposable element sub-families from white clover (Trifolium repens) using PCR amplification. PMID:27671023
Data from computational analysis of the peptide linkers in the MocR bacterial transcriptional regulators. PMID:27668276
Transcriptomic analysis of the highly efficient oil-degrading bacterium Acinetobacter venetianus RAG-1 reveals genes important in dodecane uptake and utilization. PMID:27664055
Draft Genome Sequence of Klebsiella pneumoniae Strain AS Isolated from Zhejiang Provincial Hospital of TCM, China. PMID:27660770
Hoarding and horizontal transfer led to an expanded gene and intron repertoire in the plastid genome of the diatom, Toxarium undulatum (Bacillariophyta). PMID:27655214
Novel anti-EPHA2 antibody, DS-8895a for cancer treatment. PMID:27653549
Novel compound heterozygous variants in PLK4 identified in a patient with autosomal recessive microcephaly and chorioretinopathy. PMID:27650967
Extremotolerant tardigrade genome and improved radiotolerance of human cultured cells by tardigrade-unique protein. PMID:27649274
Horizontal gene transfer drives adaptive colonization of apple trees by the fungal pathogen Valsa mali. PMID:27634406
Overexpression of the Starch Phosphorylase-Like Gene (PHO3) in Lotus japonicus has a Profound Effect on the Growth of Plants and Reduction of Transitory Starch Accumulation. PMID:27630651
Crystal structures of two nitroreductases from hypervirulent Clostridium difficile and functionally related interactions with the antibiotic metronidazole. PMID:27623089
Two Novel Flavin-Containing Monooxygenases Involved in Biosynthesis of Aliphatic Glucosinolates. PMID:27621741
Draft genome sequence of Enterococcus faecium strain LMG 8148. PMID:27610213
Francisella tularensis IglG Belongs to a Novel Family of PAAR-Like T6SS Proteins and Harbors a Unique N-terminal Extension Required for Virulence. PMID:27602570
Dynamics of Human Mitochondrial Complex I Assembly: Implications for Neurodegenerative Diseases. PMID:27597947
Mining for Candidate Genes in an Introgression Line by Using RNA Sequencing: The Anthocyanin Overaccumulation Phenotype in Brassica. PMID:27597857
Draft genome sequence of Acinetobacter baumannii strain NCTC 13423, a multidrug-resistant clinical isolate. PMID:27594976
A Recombinant Fungal Chitin Deacetylase Produces Fully Defined Chitosan Oligomers with Novel Patterns of Acetylation. PMID:27590819
Convergent evolution of tRNA gene targeting preferences in compact genomes. PMID:27583033
Using viromes to predict novel immune proteins in non-model organisms. PMID:27581878
Phylogenomic analysis supports the ancestral presence of LPS-outer membranes in the Firmicutes. PMID:27580370
Characterization of Toxin Complex Gene Clusters and Insect Toxicity of Bacteria Representing Four Subgroups of Pseudomonas fluorescens. PMID:27580176
Nucleotide binding by the widespread high-affinity cyclic di-GMP receptor MshEN domain. PMID:27578558
Comparative Genomic and Phenotypic Characterization of Pathogenic and Non-Pathogenic Strains of Xanthomonas arboricola Reveals Insights into the Infection Process of Bacterial Spot Disease of Stone Fruits. PMID:27571391
Staphylococcal SCCmec elements encode an active MCM-like helicase and thus may be replicative. PMID:27571176
Classification of the treble clef zinc finger: noteworthy lessons for structure and function evolution. PMID:27562564
Gene bb0318 Is Critical for the Oxidative Stress Response and Infectivity of Borrelia burgdorferi. PMID:27550932
DEAH-RHA helicase•Znf cofactor systems in kinetoplastid RNA editing and evolutionarily distant RNA processes. PMID:27540585
Changes in the composition of the RNA virome mark evolutionary transitions in green plants. PMID:27524491
Avian Leukosis Virus Activation of an Antisense RNA Upstream of TERT in B-Cell Lymphomas. PMID:27512065
Loss-of-function mutations in the RNA biogenesis factor NAF1 predispose to pulmonary fibrosis-emphysema. PMID:27510903
Metazoan evolution of the armadillo repeat superfamily. PMID:27497926
B Cell Receptor Activation Predominantly Regulates AKT-mTORC1/2 Substrates Functionally Related to RNA Processing. PMID:27487157
The Toll Signaling Pathway in the Chinese Oak Silkworm, Antheraea pernyi: Innate Immune Responses to Different Microorganisms. PMID:27483463
Identification of nuclear genes affecting 2-Deoxyglucose resistance in Schizosaccharomyces pombe. PMID:27481777
Alpha proteobacterial ancestry of the [Fe-Fe]-hydrogenases in anaerobic eukaryotes. PMID:27473689
Glutathione Transferases Superfamily: Cold-Inducible Expression of Distinct GST Genes in Brassica oleracea. PMID:27472324
Draft Genome Sequence of the Emerging Bivalve Pathogen Vibrio tubiashii subsp. europaeus. PMID:27469949
The Ditylenchus destructor genome provides new insights into the evolution of plant parasitic nematodes. PMID:27466450
Draft genome sequence of an inbred line of Chenopodium quinoa, an allotetraploid crop with great environmental adaptability and outstanding nutritional properties. PMID:27458999
Cell size and fat content of dietary-restricted Caenorhabditis elegans are regulated by ATX-2, an mTOR repressor. PMID:27457958
Diguanylate cyclase activity of the Mycobacterium leprae T cell antigen ML1419c. PMID:27450520
Characterization of the N-Terminal Catalytic Domain of Lytµ1/6, an Endolysin from Streptomyces aureofaciens Phage µ1/6. PMID:27449215
Whole-Metagenome-Sequencing-Based Community Profiles of Vitis vinifera L. cv. Corvina Berries Withered in Two Post-harvest Conditions. PMID:27445999
Biophysical characterization of the honeybee DSC1 orthologue reveals a novel voltage-dependent Ca2+ channel subfamily: CaV4. PMID:27432995
Beyond Tryptophan Synthase: Identification of Genes That Contribute to Chlamydia trachomatis Survival during Gamma Interferon-Induced Persistence and Reactivation. PMID:27430273
Loss of function of the Drosophila Ninein-related centrosomal protein Bsg25D causes mitotic defects and impairs embryonic development. PMID:27422905
Severe muscle wasting and denervation in mice lacking the RNA-binding protein ZFP106. PMID:27418600
Genome-Wide Analysis of the bZIP Gene Family Identifies Two ABI5-Like bZIP Transcription Factors, BrABI5a and BrABI5b, as Positive Modulators of ABA Signalling in Chinese Cabbage. PMID:27414644
Crystal structure of SgcJ, an NTF2-like superfamily protein involved in biosynthesis of the nine-membered enediyne antitumor antibiotic C-1027. PMID:27406907
Transcriptomics of Intralocus Sexual Conflict: Gene Expression Patterns in Females Change in Response to Selection on a Male Secondary Sexual Trait in the Bulb Mite. PMID:27401174
Characterization of the Xylella fastidiosa PD1311 gene mutant and its suppression of Pierce's disease on grapevines. PMID:27388152
Sex-biased gene expression and sequence conservation in Atlantic and Pacific salmon lice (Lepeophtheirus salmonis). PMID:27377915
Species- and Strain-Specific Adaptation of the HSP70 Super Family in Pathogenic Trypanosomatids. PMID:27371955
Aspirin inhibits glucose‑6‑phosphate dehydrogenase activity in HCT 116 cells through acetylation: Identification of aspirin-acetylated sites. PMID:27356773
A Novel Di-Leucine Motif at the N-Terminus of Human Organic Solute Transporter Beta Is Essential for Protein Association and Membrane Localization. PMID:27351185
Shigella flexneri serotype 1c derived from serotype 1a by acquisition of gtrIC gene cluster via a bacteriophage. PMID:27349637
Systematic identification and analysis of frequent gene fusion events in metabolic pathways. PMID:27342196
HU histone-like DNA-binding protein from Thermus thermophilus: structural and evolutionary analyses. PMID:27342116
Fusarium graminearum pyruvate dehydrogenase kinase 1 (FgPDK1) Is Critical for Conidiation, Mycelium Growth, and Pathogenicity. PMID:27341107
Molecular Cloning of HbPR-1 Gene from Rubber Tree, Expression of HbPR-1 Gene in Nicotiana benthamiana and Its Inhibition of Phytophthora palmivora. PMID:27337148
Identification and Analysis of a Novel Group of Bacteriophages Infecting the Lactic Acid Bacterium Streptococcus thermophilus. PMID:27316953
Autophagy-Associated Protein SmATG12 Is Required for Fruiting-Body Formation in the Filamentous Ascomycete Sordaria macrospora. PMID:27309377
SPATA2 links CYLD to the TNF-α receptor signaling complex and modulates the receptor signaling outcomes. PMID:27307491
Myocardial transcription factors in diastolic dysfunction: clues for model systems and disease. PMID:27306370
Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile "Ferrovum". PMID:27303384
When Genome-Based Approach Meets the "Old but Good": Revealing Genes Involved in the Antibacterial Activity of Pseudomonas sp. P482 against Soft Rot Pathogens. PMID:27303376
Identification of Plasmodium falciparum Translation Initiation eIF2β Subunit: Direct Interaction with Protein Phosphatase Type 1. PMID:27303372
The essential function of the Trypanosoma brucei Trl1 homolog in procyclic cells is maturation of the intron-containing tRNATyr. PMID:27284166
Integrative computational approach for genome-based study of microbial lipid-degrading enzymes. PMID:27263017
Newly identified bacteriolytic enzymes that target a wide range of clinical isolates of Clostridium difficile. PMID:27260850
Molecular Cloning and Characterization of Four Genes Encoding Ethylene Receptors Associated with Pineapple (Ananas comosus L.) Flowering. PMID:27252725
A Chloroplast-Localized Rubredoxin Family Protein Gene from Puccinellia tenuiflora (PutRUB) Increases NaCl and NaHCO₃ Tolerance by Decreasing H₂O₂ Accumulation. PMID:27248998
Type II Toxin-Antitoxin Distribution and Adaptive Aspects on Xanthomonas Genomes: Focus on Xanthomonas citri. PMID:27242687
Crystal Structure of Hypothetical Fructose-Specific EIIB from Escherichia coli. PMID:27215198
A Novel Metallo-β-Lactamase Involved in the Ampicillin Resistance of Streptococcus pneumoniae ATCC 49136 Strain. PMID:27214294
Flashy flagella: flagellin modification is relatively common and highly versatile among the Enterobacteriaceae. PMID:27206480
Single-Cell (Meta-)Genomics of a Dimorphic Candidatus Thiomargarita nelsonii Reveals Genomic Plasticity. PMID:27199933
The Bcl-2 homologue Buffy rescues α-synuclein-induced Parkinson disease-like phenotypes in Drosophila. PMID:27192974
Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties. PMID:27192614
Plastid-Nuclear Interaction and Accelerated Coevolution in Plastid Ribosomal Genes in Geraniaceae. PMID:27190001
Theobroma cacao L. pathogenesis-related gene tandem array members show diverse expression dynamics in response to pathogen colonization. PMID:27189060
Altered Function of the DnaJ Family Cochaperone DNJ-17 Modulates Locomotor Circuit Activity in a Caenorhabditis elegans Seizure Model. PMID:27185401
Putative virulence factors of Corynebacterium pseudotuberculosis FRC41: vaccine potential and protein expression. PMID:27184574
Falsirhodobacter sp. alg1 Harbors Single Homologs of Endo and Exo-Type Alginate Lyases Efficient for Alginate Depolymerization. PMID:27176711
Genome-wide analysis of shoot growth-associated alternative splicing in moso bamboo. PMID:27170010
An Integrated Bioinformatics Analysis Reveals Divergent Evolutionary Pattern of Oil Biosynthesis in High- and Low-Oil Plants. PMID:27159078
Independent Evolution of Six Families of Halogenating Enzymes. PMID:27153321
A Mutation in LTBP2 Causes Congenital Glaucoma in Domestic Cats (Felis catus). PMID:27149523
Transplanting a Microbial Organ: the Good, the Bad, and the Unknown. PMID:27143392
Secretory cargo sorting by Ca2+-dependent Cab45 oligomerization at the trans-Golgi network. PMID:27138253
Structure and function of α-glucan debranching enzymes. PMID:27137180
The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis. PMID:27131380
Comprehensive Transcriptome Analysis of Sex-Biased Expressed Genes Reveals Discrete Biological and Physiological Features of Male and Female Schistosoma japonicum. PMID:27128440
Accelerated cloning of a potato late blight-resistance gene using RenSeq and SMRT sequencing. PMID:27111721
Molecular Characterization and Global Expression Analysis of Lectin Receptor Kinases in Bread Wheat (Triticum aestivum). PMID:27111449
Calcium Signaling in Oomycetes: An Evolutionary Perspective. PMID:27092083
Identification of three ookinete-specific genes and evaluation of their transmission-blocking potentials in Plasmodium berghei. PMID:27083421
Genome-wide identification, structural analysis and new insights into late embryogenesis abundant (LEA) gene family formation pattern in Brassica napus. PMID:27072743
Horizontal gene transfer of acetyltransferases, invertases and chorismate mutases from different bacteria to diverse recipients. PMID:27068610
Plant-like biosynthesis of isoquinoline alkaloids in Aspergillus fumigatus. PMID:27065235
Properties and Phylogeny of 76 Families of Bacterial and Eukaryotic Organellar Outer Membrane Pore-Forming Proteins. PMID:27064789
Lynch syndrome mutation spectrum in New South Wales, Australia, including 55 novel mutations. PMID:27064304
Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes. PMID:27049771
Identification and characterization of histone lysine methylation modifiers in Fragaria vesca. PMID:27049067
A novel zinc-binding alcohol dehydrogenase 2 from Arachis diogoi, expressed in resistance responses against late leaf spot pathogen, induces cell death when transexpressed in tobacco. PMID:27047748
Identification and Partial Characterization of a Novel UDP-N-Acetylenolpyruvoylglucosamine Reductase/UDP-N-Acetylmuramate:l-Alanine Ligase Fusion Enzyme from Verrucomicrobium spinosum DSM 4136(T). PMID:27047475
Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data. PMID:27047450
Transfer of Viral Communities between Human Individuals during Fecal Microbiota Transplantation. PMID:27025251
Anaplasma phagocytophilum increases the levels of histone modifying enzymes to inhibit cell apoptosis and facilitate pathogen infection in the tick vector Ixodes scapularis. PMID:27019326
Hyperexpansion of RNA Bacteriophage Diversity. PMID:27010970
The DenA/DEN1 Interacting Phosphatase DipA Controls Septa Positioning and Phosphorylation-Dependent Stability of Cytoplasmatic DenA/DEN1 during Fungal Development. PMID:27010942
Extended phylogenetic analysis of a new Israeli isolate of Brevicoryne brassicae virus (BrBV-IL) suggests taxonomic revision of the genus Iflavirus. PMID:27000790
Venom gland components of the ectoparasitoid wasp, Anisopteromalus calandrae. PMID:26998218
Horizontal transfer of β-carbonic anhydrase genes from prokaryotes to protozoans, insects, and nematodes. PMID:26983858
Draft genome of Leisingera aquaemixtae CECT 8399(T), a member of the Roseobacter clade isolated from a junction of fresh and ocean water in Jeju Island, South Korea. PMID:26981415
PolyQ 2.0: an improved version of PolyQ, a database of human polyglutamine proteins. PMID:26980520
PhyloPro2.0: a database for the dynamic exploration of phylogenetically conserved proteins and their domain architectures across the Eukarya. PMID:26980519
Protein networks identify novel symbiogenetic genes resulting from plastid endosymbiosis. PMID:26976593
Genome-wide characterization and analysis of bZIP transcription factor gene family related to abiotic stress in cassava. PMID:26947924
Whole genome sequencing identifies a novel species of the genus Capnocytophaga isolated from dog and cat bite wounds in humans. PMID:26947740
In silico Analysis Revealed High-risk Single Nucleotide Polymorphisms in Human Pentraxin-3 Gene and their Impact on Innate Immune Response against Microbial Pathogens. PMID:26941719
HLB1 Is a Tetratricopeptide Repeat Domain-Containing Protein That Operates at the Intersection of the Exocytic and Endocytic Pathways at the TGN/EE in Arabidopsis. PMID:26941089
Enhancement of DNaseI Salt Tolerance by Mimicking the Domain Structure of DNase from an Extremely Halotolerant Bacterium Thioalkalivibrio sp. K90mix. PMID:26939122
Gene expression analysis reveals that Delta/Notch signalling is not involved in onychophoran segmentation. PMID:26935716
Draft genomic sequence of Nereida ignava CECT 5292(T), a marine bacterium of the family Rhodobacteraceae. PMID:26929790
Truncation of the unique N-terminal domain improved the thermos-stability and specific activity of alkaline α-amylase Amy703. PMID:26926401
Detection and molecular characterization of a Grapevine Roditis leaf discoloration-associated virus (GRLDaV) variant in an autochthonous grape from Apulia (Italy). PMID:26924587
Mutations in Novel Lipopolysaccharide Biogenesis Genes Confer Resistance to Amoebal Grazing in Synechococcus elongatus. PMID:26921432
Functional Analysis of an S-Layer-Associated Fibronectin-Binding Protein in Lactobacillus acidophilus NCFM. PMID:26921419
Purification, crystallization and X-ray crystallographic analysis of a putative exopolyphosphatase from Zymomonas mobilis. PMID:26919520
Homology modeling and assigned functional annotation of an uncharacterized antitoxin protein from Streptomyces xinghaiensis. PMID:26912949
Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers. PMID:26907326
Glutathione S-Transferase Gene Family in Gossypium raimondii and G. arboreum: Comparative Genomic Study and their Expression under Salt Stress. PMID:26904090
PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database. PMID:26903996
Silencing of CYP6 and APN Genes Affects the Growth and Development of Rice Yellow Stem Borer, Scirpophaga incertulas. PMID:26903874
Molecular and Functional Characterization of FLOWERING LOCUS T Homologs in Allium cepa. PMID:26891287
A virus of hyperthermophilic archaea with a unique architecture among DNA viruses. PMID:26884161
Comparative study of the P2X gene family in animals and plants. PMID:26874702
Classification of proteins with shared motifs and internal repeats in the ECOD database. PMID:26833690
The Chlamydia trachomatis Protease CPAF Contains a Cryptic PDZ-Like Domain with Similarity to Human Cell Polarity and Tight Junction PDZ-Containing Proteins. PMID:26829550
Structural and functional attributes of malaria parasite diadenosine tetraphosphate hydrolase. PMID:26829485
Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain. PMID:26823958
A gene associated with social immunity in the burying beetle Nicrophorus vespilloides. PMID:26817769
Multidomain, Surface Layer-associated Glycoside Hydrolases Contribute to Plant Polysaccharide Degradation by Caldicellulosiruptor Species. PMID:26814128
Trk2 Potassium Transport System in Streptococcus mutans and Its Role in Potassium Homeostasis, Biofilm Formation, and Stress Tolerance. PMID:26811321
Transcriptomic Determinants of Scrapie Prion Propagation in Cultured Ovine Microglia. PMID:26807844
Mode of action and resistance studies unveil new roles for tropodithietic acid as an anticancer agent and the γ-glutamyl cycle as a proton sink. PMID:26802120
Comprehensive annotation of Glossina pallidipes salivary gland hypertrophy virus from Ethiopian tsetse flies: a proteogenomics approach. PMID:26801744
Comparative genomics reveals new evolutionary and ecological patterns of selenium utilization in bacteria. PMID:26800233
Insight into the Salivary Gland Transcriptome of Lygus lineolaris (Palisot de Beauvois). PMID:26789269
Evolutionary distinctiveness of fatty acid and polyketide synthesis in eukaryotes. PMID:26784357
Selective integrin endocytosis is driven by interactions between the integrin α-chain and AP2. PMID:26779610
The Phormidolide Biosynthetic Gene Cluster: A trans-AT PKS Pathway Encoding a Toxic Macrocyclic Polyketide. PMID:26769357
Uncovering the Potential Pan Proteomes Encoded by Genomic Strand RNAs of Influenza A Viruses. PMID:26761196
Metaviromics of Namib Desert Salt Pans: A Novel Lineage of Haloarchaeal Salterproviruses and a Rich Source of ssDNA Viruses. PMID:26761024
CASP 11 target classification. PMID:26756794
Elucidating the molecular physiology of lantibiotic NAI-107 production in Microbispora ATCC-PTA-5024. PMID:26754974
Ixodes scapularis Tick Saliva Proteins Sequentially Secreted Every 24 h during Blood Feeding. PMID:26751078
Predominance of Single Prophage Carrying a CRISPR/cas System in "Candidatus Liberibacter asiaticus" Strains in Southern China. PMID:26741827
The complete genome sequence and analysis of a plasmid-bearing myxobacterial strain Myxococcus fulvus 124B02 (M 206081). PMID:26734118
The AP-1 transcription factor component Fosl2 potentiates the rate of myocardial differentiation from the zebrafish second heart field. PMID:26732840
Mottled Mice and Non-Mammalian Models of Menkes Disease. PMID:26732058
Trace Metal Acquisition by Marine Heterotrophic Bacterioplankton with Contrasting Trophic Strategies. PMID:26729720
Characterization of the general stress response in Bartonella henselae. PMID:26724735
Lactic Acid Bacteria Isolated from Bovine Mammary Microbiota: Potential Allies against Bovine Mastitis. PMID:26713450
Iron Acquisition in Mycobacterium avium subsp. paratuberculosis. PMID:26712939
AraC-Type Regulator Rsp Adapts Staphylococcus aureus Gene Expression to Acute Infection. PMID:26712209
Genome-wide analysis, molecular cloning and expression profiling reveal tissue-specifically expressed, feedback-regulated, stress-responsive and alternatively spliced novel genes involved in gibberellin metabolism in Salvia miltiorrhiza. PMID:26689421
De novo transcriptome sequencing and analysis of Coccinella septempunctata L. in non-diapause, diapause and diapause-terminated states to identify diapause-associated genes. PMID:26689283
Common Viral Integration Sites Identified in Avian Leukosis Virus-Induced B-Cell Lymphomas. PMID:26670384
Metagenome-assembled genomes uncover a global brackish microbiome. PMID:26667648
Complete genome sequence of the molybdenum-resistant bacterium Bacillus subtilis strain LM 4-2. PMID:26664656
Protein purification and crystallization artifacts: The tale usually not told. PMID:26660914
Tie2 Signaling Enhances Mast Cell Progenitor Adhesion to Vascular Cell Adhesion Molecule-1 (VCAM-1) through α4β1 Integrin. PMID:26659448
Biophysical Characterization of G-Quadruplex Recognition in the PITX1 mRNA by the Specificity Domain of the Helicase RHAU. PMID:26649896
Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus. PMID:26649868
CYTOKININ OXIDASE/DEHYDROGENASE3 Maintains Cytokinin Homeostasis during Root and Nodule Development in Lotus japonicus. PMID:26644503
COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps. PMID:26635392
Draft Genome Sequence of the Marine Pathogen Vibrio coralliilyticus RE22. PMID:26634766
Systematic unravelling of the biosynthesis of poly (L-diaminopropionic acid) in Streptomyces albulus PD-1. PMID:26632244
The antimalarial drug primaquine targets Fe-S cluster proteins and yeast respiratory growth. PMID:26629948
The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling. PMID:26615215
Database resources of the National Center for Biotechnology Information. PMID:26615191
BluB/CobT2 fusion enzyme activity reveals mechanisms responsible for production of active form of vitamin B₁₂ by Propionibacterium freudenreichii. PMID:26597297
Profiling of the Early Nitrogen Stress Response in the Diatom Phaeodactylum tricornutum Reveals a Novel Family of RING-Domain Transcription Factors. PMID:26582725
Hemichordate genomes and deuterostome origins. PMID:26580012
Evolution of Prdm Genes in Animals: Insights from Comparative Genomics. PMID:26560352
The Pseudomonas aeruginosa AmrZ C-terminal domain mediates tetramerization and is required for its activator and repressor functions. PMID:26549743
The Extracellular Wall-Bound β-N-Acetylglucosaminidase from Lactobacillus casei Is Involved in the Metabolism of the Human Milk Oligosaccharide Lacto-N-Triose. PMID:26546429
The Distant Siblings-A Phylogenomic Roadmap Illuminates the Origins of Extant Diversity in Fungal Aromatic Polyketide Biosynthesis. PMID:26537223
The Skeleton Forming Proteome of an Early Branching Metazoan: A Molecular Survey of the Biomineralization Components Employed by the Coralline Sponge Vaceletia Sp. PMID:26536128
A bioinformatic survey of RNA-binding proteins in Plasmodium. PMID:26525978
Systematic Identification of Cyclic-di-GMP Binding Proteins in Vibrio cholerae Reveals a Novel Class of Cyclic-di-GMP-Binding ATPases Associated with Type II Secretion Systems. PMID:26506097
The La-Related Proteins, a Family with Connections to Cancer. PMID:26501340
Complete genome sequences of bacteriophages P12002L and P12002S, two lytic phages that infect a marine Polaribacter strain. PMID:26500718
Hypomorphic mutations in TRNT1 cause retinitis pigmentosa with erythrocytic microcytosis. PMID:26494905
The transcriptome of Candida albicans mitochondria and the evolution of organellar transcription units in yeasts. PMID:26487099
A comprehensive mapping of the structure and gene organisation in the sheep MHC class I region. PMID:26480943
Molecular dissection of a putative iron reductase from Desulfotomaculum reducens MI-1. PMID:26454174
Adherence and invasive properties of Corynebacterium diphtheriae strains correlates with the predicted membrane-associated and secreted proteome. PMID:26452736
Whole Genome Sequencing of the Asian Arowana (Scleropages formosus) Provides Insights into the Evolution of Ray-Finned Fishes. PMID:26446539
General Stress Signaling in the Alphaproteobacteria. PMID:26442844
Prophage recombinases-mediated genome engineering in Lactobacillus plantarum. PMID:26438232
Search for Allergens from the Pollen Proteome of Sunflower (Helianthus annuus L.): A Major Sensitizer for Respiratory Allergy Patients. PMID:26418046
Cell Wall Recycling-Linked Coregulation of AmpC and PenB β-Lactamases through ampD Mutations in Burkholderia cenocepacia. PMID:26416862
Expression of calpain-like proteins and effects of calpain inhibitors on the growth rate of Angomonas deanei wild type and aposymbiotic strains. PMID:26415499
Evidence-Based Structural Model of the Staphylococcal Repressor Protein: Separation of Functions into Different Domains. PMID:26414067
Molecular Interactions and Cellular Itinerary of the Yeast RAVE (Regulator of the H+-ATPase of Vacuolar and Endosomal Membranes) Complex. PMID:26405040
Genomic Instability of the Sex-Determining Locus in Atlantic Salmon (Salmo salar). PMID:26401030
Evolution of Chemical Diversity in a Group of Non-Reduced Polyketide Gene Clusters: Using Phylogenetics to Inform the Search for Novel Fungal Natural Products. PMID:26378577
Biochemical Characterization of Putative Adenylate Dimethylallyltransferase and Cytokinin Dehydrogenase from Nostoc sp. PCC 7120. PMID:26376297
The multifunctional protein CI of potyviruses plays interlinked and distinct roles in viral genome replication and intercellular movement. PMID:26373859
Structure of mammalian eIF3 in the context of the 43S preinitiation complex. PMID:26344199
Complete genome sequencing of Pandoraea pnomenusa RB38 and Molecular Characterization of Its N-acyl homoserine lactone synthase gene ppnI. PMID:26336650
ATGL and CGI-58 are lipid droplet proteins of the hepatic stellate cell line HSC-T6. PMID:26330055
Experimental Evidence for a Revision in the Annotation of Putative Pyridoxamine 5'-Phosphate Oxidases P(N/M)P from Fungi. PMID:26327315
Overexpression of a phospholipase Dα gene from Ammopiptanthus nanus enhances salt tolerance of phospholipase Dα1-deficient Arabidopsis mutant. PMID:26318308
Genome-Wide Identification and Expression Analyses of Aquaporin Gene Family during Development and Abiotic Stress in Banana. PMID:26307965
Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria. PMID:26305100
Mutation of Rv2887, a marR-like gene, confers Mycobacterium tuberculosis resistance to an imidazopyridine-based agent. PMID:26303802
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. PMID:26284514
Complete Genome Sequence of Phytopathogenic Pectobacterium atrosepticum Bacteriophage Peat1. PMID:26272557
The Immunoreactive Exo-1,3-β-Glucanase from the Pathogenic Oomycete Pythium insidiosum Is Temperature Regulated and Exhibits Glycoside Hydrolase Activity. PMID:26263509
The Essential Role of Vitellogenin Receptor in Ovary Development and Vitellogenin Uptake in Bactrocera dorsalis (Hendel). PMID:26262609
Cross Talk Inhibition Nullified by a Receiver Domain Missense Substitution. PMID:26260457
An advanced draft genome assembly of a desi type chickpea (Cicer arietinum L.). PMID:26259924
Remote homology and the functions of metagenomic dark matter. PMID:26257768
The Protein Acetyltransferase PatZ from Escherichia coli Is Regulated by Autoacetylation-induced Oligomerization. PMID:26251518
Functional and Structural Impact of ATP-Binding Cassette Transporter A1 R219K and I883M Gene Polymorphisms in Obese Children and Adolescents. PMID:26243156
Tetrapod axial evolution and developmental constraints; Empirical underpinning by a mouse model. PMID:26238020
Incorporating Functional Information in Tests of Excess De Novo Mutational Load. PMID:26235986
Virulence Factor Genes Detected in the Complete Genome Sequence of Corynebacterium uterequi DSM 45634, Isolated from the Uterus of a Maiden Mare. PMID:26227590
The VQ Motif-Containing Protein Family of Plant-Specific Transcriptional Regulators. PMID:26220951
Functional Networks of Highest-Connected Splice Isoforms: From The Chromosome 17 Human Proteome Project. PMID:26216192
Functional Characterization of New Polyketide Synthase Genes Involved in Ochratoxin A Biosynthesis in Aspergillus Ochraceus fc-1. PMID:26213966
Genome-wide identification and Phylogenic analysis of kelch motif containing ACBP in Brassica napus. PMID:26156054
Molecular Characterization, mRNA Expression and Alternative Splicing of Ryanodine Receptor Gene in the Brown Citrus Aphid, Toxoptera citricida (Kirkaldy). PMID:26154764
Functional classification of CATH superfamilies: a domain-based approach for protein function annotation. PMID:26139634
Pseudomonas aeruginosa MifS-MifR Two-Component System Is Specific for α-Ketoglutarate Utilization. PMID:26114434
Diversity of the Epsilonproteobacteria Dsb (disulfide bond) systems. PMID:26106374
Identification and Heterologous Expression of the Chaxamycin Biosynthesis Gene Cluster from Streptomyces leeuwenhoekii. PMID:26092459
Maize EMBRYO SAC family peptides interact differentially with pollen tubes and fungal cells. PMID:26071527
Novel Introner-Like Elements in fungi Are Involved in Parallel Gains of Spliceosomal Introns. PMID:26046656
Databases for Microbiologists. PMID:26013493
CATH FunFHMMer web server: protein functional annotations using functional family assignments. PMID:25964299
Evidence for Posttranslational Protein Flavinylation in the Syphilis Spirochete Treponema pallidum: Structural and Biochemical Insights from the Catalytic Core of a Periplasmic Flavin-Trafficking Protein. PMID:25944861
DNA METHYLTRANSFERASE 1 is involved in (m)CG and (m)CCG DNA methylation and is essential for sporophyte development in Physcomitrella patens. PMID:25944663
Two duplicated genes DDI2 and DDI3 in budding yeast encode a cyanamide hydratase and are induced by cyanamide. PMID:25847245
Fundus albipunctatus: review of the literature and report of a novel RDH5 gene mutation affecting the invariant tyrosine (p.Tyr175Phe). PMID:25820994
Key challenges for the creation and maintenance of specialist protein resources. PMID:25820941
Common bean reaction to angular leaf spot comprises transcriptional modulation of genes in the ALS10.1 QTL. PMID:25815001
Defining the gene repertoire and spatiotemporal expression profiles of adhesion G protein-coupled receptors in zebrafish. PMID:25715737
The 2015 Nucleic Acids Research Database Issue and molecular biology database collection. PMID:25593347
TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1. PMID:20017921
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures PubMed citations: 1006.

1006 articles citing: CDD/SPARCLE: functional classification of proteins via subfamily domain architectures

Generalized Property-Based Encoders and Digital Signal Processing Facilitate Predictive Tasks in Protein Engineering. PMID:35911960
Full-length transcriptomic analysis in murine and human heart reveals diversity of PGC-1α promoters and isoforms regulated distinctly in myocardial ischemia and obesity. PMID:35907957
Epigenetically silenced apoptosis-associated tyrosine kinase (AATK) facilitates a decreased expression of Cyclin D1 and WEE1, phosphorylates TP53 and reduces cell proliferation in a kinase-dependent manner. PMID:35902728
Co-evolutionary adaptations of Acinetobacter baumannii and a clinical carbapenemase-encoding plasmid during carbapenem exposure. PMID:35899254
FastANI, Mash and Dashing equally differentiate between Klebsiella species. PMID:35891643
Proteome-Based Serotyping of the Food-Borne Pathogens Salmonella Enterica by Label-Free Mass Spectrometry. PMID:35889206
Genome-Wide Identification of Glutathione S-Transferase and Expression Analysis in Response to Anthocyanin Transport in the Flesh of the New Teinturier Grape Germplasm 'Zhongshan-HongYu'. PMID:35887065
An Abundant and Diverse New Family of Electron Bifurcating Enzymes With a Non-canonical Catalytic Mechanism. PMID:35875533
Structural insights into the RNA interaction with Yam bean Mosaic virus (coat protein) from Pachyrhizus erosus using bioinformatics approach. PMID:35867657
A recurrent single-amino acid deletion (p.Glu500del) in the head domain of ß-cardiac myosin in two unrelated boys presenting with polyhydramnios, congenital axial stiffness and skeletal myopathy. PMID:35854315
Testing candidate genes linked to corolla shape variation of a pollinator shift in Rhytidophyllum (Gesneriaceae). PMID:35853078
Mycovirus Hunting Revealed the Presence of Diverse Viruses in a Single Isolate of the Phytopathogenic Fungus Diplodia seriata From Pakistan. PMID:35846770
Prune homolog 2 with BCH domain (PRUNE2) gene expression is associated with feed efficiency-related traits in Nelore steers. PMID:35840822
Identification of BcARR Genes and CTK Effects on Stalk Development of Flowering Chinese Cabbage. PMID:35806416
Genome-Wide Analysis of Type-III Polyketide Synthases in Wheat and Possible Roles in Wheat Sheath-Blight Resistance. PMID:35806194
Drosophila MESR4 Gene Ensures Germline Stem Cell Differentiation by Promoting the Transcription of bag of marbles. PMID:35805140
Polymorphisms of the Growth Hormone Releasing Hormone Receptor Gene Affect Body Conformation Traits in Chinese Dabieshan Cattle. PMID:35804502
Deeper insights into long-term survival heterogeneity of pancreatic ductal adenocarcinoma (PDAC) patients using integrative individual- and group-level transcriptome network analyses. PMID:35773268
A chromosome-level genome assembly and intestinal transcriptome of Trypoxylus dichotomus (Coleoptera: Scarabaeidae) to understand its lignocellulose digestion ability. PMID:35764601
Role of an FNIP Repeat Domain-Containing Protein Encoded by Megavirus Baoshan during Viral Infection. PMID:35762756
Mutational Analysis of Vibrio fischeri c-di-GMP-Modulating Genes Reveals Complex Regulation of Motility. PMID:35758751
Filamentous Pseudomonas Phage Pf4 in the Context of Therapy-Inducibility, Infectivity, Lysogenic Conversion, and Potential Application. PMID:35746731
A Comprehensive Study of the WRKY Transcription Factor Family in Strawberry. PMID:35736736
Characterization and Complete Genomic Analysis of Vibrio Parahaemolyticus-Infecting Phage KIT05. PMID:35704129
Genome-wide identification and characterization of glutathione S-transferase gene family in Musa acuminata L. AAA group and gaining an insight to their role in banana fruit development. PMID:35689012
Cloning of the broadly effective wheat leaf rust resistance gene Lr42 transferred from Aegilops tauschii. PMID:35650212
Recombinant Lactococcus lactis Expressing Grass Carp Reovirus VP6 Induces Mucosal Immunity Against Grass Carp Reovirus Infection. PMID:35634331
Three Diverse Granule Preparation Methods for Proteomic Analysis of Mature Rice (Oryza sativa L.) Starch Grain. PMID:35630784
The GDSL-Lipolytic Enzyme Lip1 Is Required for Full Virulence of the Cucurbit Pathogenic Bacterium Acidovorax citrulli. PMID:35630458
Molecular Characterization and Expression Analysis of Putative Class C (Glutamate Family) G Protein-Coupled Receptors in Ascidian Styela clava. PMID:35625509
In silico and in vitro study of Mycobacterium tuberculosis H37Rv uncharacterized protein (RipD): an insight on tuberculosis therapeutics. PMID:35624324
A regulatory linkage between scytonemin production and hormogonia differentiation in Nostoc punctiforme. PMID:35620423
Hybrid Sequencing Resolved Inverted Terminal Repeats in the Genome of Megavirus Baoshan. PMID:35620092
Fbxw17 is dispensable for viability and fertility in mice. PMID:35585383
Contrasting Health Effects of Bacteroidetes and Firmicutes Lies in Their Genomes: Analysis of P450s, Ferredoxins, and Secondary Metabolite Clusters. PMID:35563448
Complete genome sequence of a novel cytorhabdovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic. PMID:35538166
Understanding Diversity, Evolution, and Structure of Small Heat Shock Proteins in Annelida Through in Silico Analyses. PMID:35530508
Targeting DCLK1 overcomes 5-fluorouracil resistance in colorectal cancer through inhibiting CCAR1/β-catenin pathway-mediated cancer stemness. PMID:35522902
A T cell resilience model associated with response to immunotherapy in multiple tumor types. PMID:35501486
SPARC: Structural properties associated with residue constraints. PMID:35495120
Discovery of two distinct aminoacyl-tRNA synthetase complexes anchored to the Plasmodium surface tRNA import protein. PMID:35487244
Comparative analysis of genome-based CAZyme cassette in Antarctic Microbacterium sp. PAMC28756 with 31 other Microbacterium species. PMID:35486322
In Silico Identification and Characterization of a Hypothetical Protein From Rhodobacter capsulatus Revealing S-Adenosylmethionine-Dependent Methyltransferase Activity. PMID:35478993
S51 Family Peptidases Provide Resistance to Peptidyl-Nucleotide Antibiotic McC. PMID:35467414
Two Type VI Secretion DNase Effectors are Utilized for Interbacterial Competition in the Fish Pathogen Pseudomonas plecoglossicida. PMID:35464968
Intraspecific de novo gene birth revealed by presence-absence variant genes in Caenorhabditis elegans. PMID:35464238
Characterisation of Bacteriophage vB_SmaM_Ps15 Infective to Stenotrophomonas maltophilia Clinical Ocular Isolates. PMID:35458438
Evolutionary and Association Analysis of Buffalo FABP Family Genes Reveal Their Potential Role in Milk Performance. PMID:35456406
Characterization of an Unknown Region Linked to the Glycoside Hydrolase Family 17 β-1,3-Glucanase of Vibrio vulnificus Reveals a Novel Glucan-Binding Domain. PMID:35447923
Metazoans and Intrinsic Apoptosis: An Evolutionary Analysis of the Bcl-2 Family. PMID:35409052
Systematic Analysis and Expression Profiles of the 4-Coumarate: CoA Ligase (4CL) Gene Family in Pomegranate (Punica granatum L.). PMID:35408870
Identification of Glycoside Transporters From the Human Gut Microbiome. PMID:35401468
Genome-wide identification and characterization of bZIP gene family and cloning of candidate genes for anthocyanin biosynthesis in pomegranate (Punica granatum). PMID:35379169
Genetic Characteristics of Porcine Hemagglutinating Encephalomyelitis Coronavirus: Identification of Naturally Occurring Mutations Between 1970 and 2015. PMID:35369458
Characterization of Bifidobacterium asteroides Isolates. PMID:35336230
Novel Salmonella Phage, vB_Sen_STGO-35-1, Characterization and Evaluation in Chicken Meat. PMID:35336181
COX4-like, a Nuclear-Encoded Mitochondrial Gene Duplicate, Is Essential for Male Fertility in Drosophila melanogaster. PMID:35327978
Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis. PMID:35313954
Chromosomal-Level Genome Assembly of the Springtail Tomocerus qinae (Collembola: Tomoceridae). PMID:35298623
A Missing Link between Retrotransposons and Retroviruses. PMID:35289644
Genome Analysis of the Broad Host Range Necrotroph Nalanthamala psidii Highlights Genes Associated With Virulence. PMID:35283890
Targeting Acyl Homoserine Lactones (AHLs) by the quorum quenching bacterial strains to control biofilm formation in Pseudomonas aeruginosa. PMID:35280554
Genome-Wide Identification of the TIFY Gene Family in Brassiceae and Its Potential Association with Heavy Metal Stress in Rapeseed. PMID:35270137
Investigation of Roles of TaTALE Genes during Development and Stress Response in Bread Wheat. PMID:35270056
Three-Dimensional Structure Characterization and Inhibition Study of Exfoliative Toxin D From Staphylococcus aureus. PMID:35250557
The periplasmic chaperone protein Psg_2795 contributes to the virulence of Pseudomonas savastanoi pv. glycinea: the causal agent of bacterial blight of soybean. PMID:35246805
Bacteriophage Lytic Enzyme P9ly as an Alternative Antibacterial Agent Against Antibiotic-Resistant Shigella dysenteriae and Staphylococcus aureus. PMID:35237249
Genome-wide analysis of sucrose synthase family in soybean and their expression in response to abiotic stress and seed development. PMID:35213642
Horizontal Transposon Transfer and Its Implications for the Ancestral Ecology of Hydrophiine Snakes. PMID:35205262
An inducible CRISPR/Cas9 screen identifies DTX2 as a transcriptional regulator of human telomerase. PMID:35198878
Identification of Novel Compound Heterozygous Variants of the PNPLA6 Gene in Boucher-Neuhäuser Syndrome. PMID:35198007
Human gut commensal bacterium Ruminococcus species FMB-CY1 completely degrades the granules of resistant starch. PMID:35186353
Migrators within migrators: exploring transposable element dynamics in the monarch butterfly, Danaus plexippus. PMID:35172896
Metabolomic and Transcriptional Profiling of Oleuropein Bioconversion into Hydroxytyrosol during Table Olive Fermentation by Lactiplantibacillus plantarum. PMID:35170988
Transcription Factor RrANT1 of Rosa rugosa Positively Regulates Flower Organ Size in Petunia hybrida. PMID:35163160
Chromosome-Level Genome Assembly of Anthidium xuezhongi Niu & Zhu, 2020 (Hymenoptera: Apoidea: Megachilidae: Anthidiini). PMID:35150256
Genome-Wide Identification and Analysis of the Ascorbate Peroxidase (APX) Gene Family of Winter Rapeseed (Brassica rapa L.) Under Abiotic Stress. PMID:35126448
A hyperpromiscuous antitoxin protein domain for the neutralization of diverse toxin domains. PMID:35121656
A Chromosome-Level Genome Assembly of the Parasitic Wasp Chelonus formosanus Sonan 1932 (Hymenoptera: Braconidae). PMID:35104339
The pollen virome of wild plants and its association with variation in floral traits and land use. PMID:35082293
A tau class GST, OsGSTU5, interacts with VirE2 and modulates the Agrobacterium-mediated transformation in rice. PMID:35067774
Biome-specific distribution of Ni-containing carbon monoxide dehydrogenases. PMID:35059858
Comparison of Carbonic Anhydrases for CO2 Sequestration. PMID:35055147
Genome-Wide Identification and Characterization of the RCI2 Gene Family in Allotetraploid Brassica napus Compared with Its Diploid Progenitors. PMID:35054810
A 13CO2 Enrichment Experiment to Study the Synthesis Pathways of Polyunsaturated Fatty Acids of the Haptophyte Tisochrysis lutea. PMID:35049877
A DEK domain-containing protein GhDEK2D mediated Gossypium hirsutum enhanced resistance to Verticillium dahliae. PMID:35034577
Mining for novel cyclomaltodextrin glucanotransferases unravels the carbohydrate metabolism pathway via cyclodextrins in Thermoanaerobacterales. PMID:35031648
Patchy Distribution of GTPases of Immunity-Associated Proteins (GIMAP) within Cnidarians and Dinoflagellates Suggests a Complex Evolutionary History. PMID:35015849
Invitro bioprocessing of corn as poultry feed additive by the influence of carbohydrate hydrolyzing metagenome derived enzyme cocktail. PMID:35013392
Genome-wide identification and expression analysis of the coronatine-insensitive 1 (COI1) gene family in response to biotic and abiotic stresses in Saccharum. PMID:34998383
SortPred: The first machine learning based predictor to identify bacterial sortases and their classes using sequence-derived information. PMID:34976319
Expression, Localization, and Protein Interactions of the Partitioning Proteins in the Gonococcal Type IV Secretion System. PMID:34975804
Genome-Wide Identification and Characterization of Melon bHLH Transcription Factors in Regulation of Fruit Development. PMID:34961193
Comprehensive Analysis of the SUV Gene Family in Allopolyploid Brassica napus and Its Diploid Ancestors. PMID:34946800
Genome placement of alpha-haemolysin cluster is associated with alpha-haemolysin sequence variation, adhesin and iron acquisition factor profile of Escherichia coli. PMID:34939560
High natural PHA production from acetate in Cobetia sp. MC34 and Cobetia marina DSM 4741T and in silico analyses of the genus specific PhaC2 polymerase variant. PMID:34930259
Investigation of core machinery for biosynthesis of Vi antigen capsular polysaccharides in Gram-negative bacteria. PMID:34896394
Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity. PMID:34894225
Characterization of the mitochondrial genomes of three powdery mildew pathogens reveals remarkable variation in size and nucleotide composition. PMID:34890311
Syntrophic propionate-oxidizing bacteria in methanogenic systems. PMID:34875063
PAAR Proteins Are Versatile Clips That Enrich the Antimicrobial Weapon Arsenals of Prokaryotes. PMID:34874775
A New Class of Cell Wall-Recycling l,d-Carboxypeptidase Determines β-Lactam Susceptibility and Morphogenesis in Acinetobacter baumannii. PMID:34872350
A High-Density Genetic Linkage Map and Fine Mapping of QTL For Feed Conversion Efficiency in Common Carp (Cyprinus carpio). PMID:34868267
Nuclear transport genes recurrently duplicate by means of RNA intermediates in Drosophila but not in other insects. PMID:34863092
Overexpression of PvWOX3a in switchgrass promotes stem development and increases plant height. PMID:34848686
New Insights into Plant TPK Ion Channel Evolution. PMID:34834689
The Methods of Digging for "Gold" within the Salt: Characterization of Halophilic Prokaryotes and Identification of Their Valuable Biological Products Using Sequencing and Genome Mining Tools. PMID:34828362
Transcriptomic Profile of the Cockle Cerastoderma edule Exposed to Seasonal Diarrhetic Shellfish Toxin Contamination. PMID:34822568
Virus-derived sequences from the transcriptomes of two snail vectors of schistosomiasis, Biomphalaria pfeifferi and Bulinus globosus from Kenya. PMID:34820163
Genome-wide identification and expression profiling of the COBRA-like genes reveal likely roles in stem strength in rapeseed (Brassica napus L.). PMID:34818361
Characterization of the Flagellar Collar Reveals Structural Plasticity Essential for Spirochete Motility. PMID:34809456
Pan-genome analysis identifies intersecting roles for Pseudomonas specialized metabolites in potato pathogen inhibition. PMID:34792466
Comparative genomic analysis of the tricarboxylic acid cycle members in four Solanaceae vegetable crops and expression pattern analysis in Solanum tuberosum. PMID:34773990
Synthaser: a CD-Search enabled Python toolkit for analysing domain architecture of fungal secondary metabolite megasynth(et)ases. PMID:34763725
Evolution of the Cytokinin Dehydrogenase (CKX) Domain. PMID:34757471
Evaluating functional ligand-GPCR interactions in cell-based assays. PMID:34752330
Genomic Insights Into the Archaea Inhabiting an Australian Radioactive Legacy Site. PMID:34737728
Differential expression of transposable elements in the medaka melanoma model. PMID:34705830
Genome-Wide Identification of LATERAL ORGAN BOUNDARIES DOMAIN (LBD) Transcription Factors and Screening of Salt Stress Candidates of Rosa rugosa Thunb. PMID:34681091
Transcriptome-based identification and expression profiling of AP2/ERF members in Caragana intermedia and functional analysis of CiDREB3. PMID:34677713
Chromosome-Level Genome Assembly of Nephotettix cincticeps (Uhler, 1896) (Hemiptera: Cicadellidae: Deltocephalinae). PMID:34677607
Molecular characteristics of a novel hypovirus from Trichoderma harzianum. PMID:34674011
A Previously Undescribed Highly Prevalent Phage Identified in a Danish Enteric Virome Catalog. PMID:34665009
A histidine kinase and a response regulator provide phage resistance to Marinomonas mediterranea via CRISPR-Cas regulation. PMID:34663886
Mutation of the ALBOSTRIANS Ohnologous Gene HvCMF3 Impairs Chloroplast Development and Thylakoid Architecture in Barley. PMID:34659298
Genome-wide identification, phylogeny and expression analysis of AP2/ERF transcription factors family in sweet potato. PMID:34656106
Molecular Functions and Pathways of Plastidial Starch Phosphorylase (PHO1) in Starch Metabolism: Current and Future Perspectives. PMID:34638789
Genome-Wide Identification and Comparison of Cysteine Proteases in the Pollen Coat and Other Tissues in Maize. PMID:34630461
In silico/computational analysis of mevalonate pyrophosphate decarboxylase gene families in Campanulids. PMID:34616915
Resistance to a CRISPR-based gene drive at an evolutionarily conserved site is revealed by mimicking genotype fixation. PMID:34610011
Epidermal galactose spurs chytrid virulence and predicts amphibian colonization. PMID:34608163
Optimizing Efficient RNAi-Mediated Control of Hemipteran Pests (Psyllids, Leafhoppers, Whitefly): Modified Pyrimidines in dsRNA Triggers. PMID:34579315
Novel, Fully Characterised Bovine Taste Bud Cells of Fungiform Papillae. PMID:34571933
Analyses of open-access multi-omics data sets reveal genetic and expression characteristics of maize ZmCCT family genes. PMID:34567492
Genome-Wide Transcription Factor DNA Binding Sites and Gene Regulatory Networks in Clostridium thermocellum. PMID:34566906
Incomplete tricarboxylic acid cycle and proton gradient in Pandoravirus massiliensis: is it still a virus? PMID:34556816
Activation of EGFR signaling by Tc-Vein and Tc-Spitz regulates the metamorphic transition in the red flour beetle Tribolium castaneum. PMID:34552169
The function of twister ribozyme variants in non-LTR retrotransposition in Schistosoma mansoni. PMID:34551436
Prophage Tracer: precisely tracing prophages in prokaryotic genomes using overlapping split-read alignment. PMID:34551431
The first chromosome-level genome assembly of a green lacewing Chrysopa pallens and its implication for biological control. PMID:34549894
Characterization and genomic analysis of the first Oceanospirillum phage, vB_OliS_GJ44, representing a novel siphoviral cluster. PMID:34544379
Genetic variants of the growth differentiation factor 8 affect body conformation traits in Chinese Dabieshan cattle. PMID:34530508
Highly Efficient Computationally Derived Novel Metagenome α-Amylase With Robust Stability Under Extreme Denaturing Conditions. PMID:34526977
Comparative molecular evolution of chitinases in ascomycota with emphasis on mycoparasitism lifestyle. PMID:34516366
Evolution of Functional Diversity in the Holozoan Tyrosine Kinome. PMID:34515793
Enhancing Ristomycin A Production by Overexpression of ParB-Like StrR Family Regulators Controlling the Biosynthesis Genes. PMID:34505824
Characterisation of novel functionality within the Blastocystis tryptophanase gene. PMID:34492012
Up-regulation of apoptotic- and cell survival-related gene pathways following exposures of western corn rootworm to B. thuringiensis crystalline pesticidal proteins in transgenic maize roots. PMID:34479486
Duo: A Signature Based Method to Batch-Analyze Functional Similarities of Proteins. PMID:34475860
Whole genome sequencing reveals possible host species adaptation of Streptococcus dysgalactiae. PMID:34462475
Genome-wide identification, gene cloning, subcellular location and expression analysis of SPL gene family in P. granatum L. PMID:34454435
Genome-Wide Identification, Phylogenetic and Expression Pattern Analysis of GATA Family Genes in Cucumber (Cucumis sativus L.). PMID:34451671
Clandestinovirus: A Giant Virus With Chromatin Proteins and a Potential to Manipulate the Cell Cycle of Its Host Vermamoeba vermiformis. PMID:34447361
Bioinformatic Analysis of Two TOR (Target of Rapamycin)-Like Proteins Encoded by Entamoeba histolytica Revealed Structural Similarities with Functional Homologs. PMID:34440318
The Natterin Proteins Diversity: A Review on Phylogeny, Structure, and Immune Function. PMID:34437409
Classic Pentachlorophenol Hydroxylating Phenylalanine 4-Monooxygenase from Indigenous Bacillus tropicus Strain AOA-CPS1: Cloning, Overexpression, Purification, Characterization and Structural Homology Modelling. PMID:34417677
BB0562 is a nutritional virulence determinant with lipase activity important for Borrelia burgdorferi infection and survival in fatty acid deficient environments. PMID:34415955
Manganese Privation-Induced Transcriptional Upregulation of the Class IIa Bacteriocin Plantaricin 423 in Lactobacillus plantarum Strain 423. PMID:34406833
Formylglycine-Generating Enzyme-Like Proteins Constitute a Novel Family of Widespread Type VI Secretion System Immunity Proteins. PMID:34398661
Hydroxybenzoate hydroxylase genes underlying protocatechuic acid production in Valsa mali are required for full pathogenicity in apple trees. PMID:34390112
Characterization of Mariner transposons in seven species of Rhus gall aphids. PMID:34381125
The DUF221 domain-containing (DDP) genes identification and expression analysis in tomato under abiotic and phytohormone stress. PMID:34379048
The Resistome and Mobilome of Multidrug-Resistant Staphylococcus sciuri C2865 Unveil a Transferable Trimethoprim Resistance Gene, Designated dfrE, Spread Unnoticed. PMID:34374564
PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions. PMID:34370723
Recapture Lysosomal Enzyme Deficiency via Targeted Gene Disruption in the Human Near-Haploid Cell Line HAP1. PMID:34356092
GTXplorer: A portal to navigate and visualize the evolutionary information encoded in fold A glycosyltransferases. PMID:34351427
Characterization of Five Transmembrane Proteins: With Focus on the Tweety, Sideroflexin, and YIP1 Domain Families. PMID:34350187
Toyo virus, a novel member of the Kaisodi group in the genus Uukuvirus (family Phenuiviridae) found in Haemaphysalis formosensis ticks in Japan. PMID:34341873
Carbohydrate-Binding Module and Linker Allow Cold Adaptation and Salt Tolerance of Maltopentaose-Forming Amylase From Marine Bacterium Saccharophagus degradans 2-40 T. PMID:34335544
Unwinding the roles of RNA helicase MOV10. PMID:34327836
RNA polymerases in strict endosymbiont bacteria with extreme genome reduction show distinct erosions that might result in limited and differential promoter recognition. PMID:34324516
Targeted immune epitope prediction to HHLA2 and MAGEB5 protein variants as therapeutic approach to related viral diseases. PMID:34320928
Comparative genome and transcriptome analyses reveal innate differences in response to host plants by two color forms of the two-spotted spider mite Tetranychus urticae. PMID:34301178
Improving Mobilization of Foreign DNA into Zymomonas mobilis Strain ZM4 by Removal of Multiple Restriction Systems. PMID:34288704
Engineered Type Six Secretion Systems Deliver Active Exogenous Effectors and Cre Recombinase. PMID:34281388
Discovery and Characterization of a Novel Bipartite Botrexvirus From the Phytopathogenic Fungus Botryosphaeria dothidea. PMID:34276630
Bioinformatic Analysis of the Campylobacter jejuni Type VI Secretion System and Effector Prediction. PMID:34276628
Insights Into the Phylogenetic Distribution, Diversity, Structural Attributes, and Substrate Specificity of Putative Cyanobacterial Orthocaspases. PMID:34276616
The CaCA superfamily genes in Saccharum: comparative analysis and their functional implications in response to biotic and abiotic stress. PMID:34275454
Important innate differences in determining symbiotic responsiveness in host and non-hosts of arbuscular mycorrhiza. PMID:34262100
DeepGraphGO: graph neural network for large-scale, multispecies protein function prediction. PMID:34252926
Molecular characterization and nutritional regulation of sodium-dependent glucose cotransporter 1 (Sglt1) in blunt snout bream (Megalobrama amblycephala). PMID:34234240
The mitochondrial genome of the grape powdery mildew pathogen Erysiphe necator is intron rich and exhibits a distinct gene organization. PMID:34230575
Genome-Wide Characterization and Expression Analysis of CAMTA Gene Family Under Salt Stress in Cucurbita moschata and Cucurbita maxima. PMID:34220934
The origin and radiation of the phosphoprotein phosphatase (PPP) enzymes of Eukaryotes. PMID:34211082
Discovery of Known and Novel Viruses in Wild and Cultivated Blueberry in Florida through Viral Metagenomic Approaches. PMID:34207047
Surface-Shaving Proteomics of Mycobacterium marinum Identifies Biofilm Subtype-Specific Changes Affecting Virulence, Tolerance, and Persistence. PMID:34156290
A multi-OMIC characterisation of biodegradation and microbial community succession within the PET plastisphere. PMID:34154652
Identification of a protein unique to the genus Plasmodium that contains a WD40 repeat domain and extensive low-complexity sequence. PMID:34142223
The spike glycoprotein genes of porcine epidemic diarrhea viruses isolated in China. PMID:34130762
Molecular characterization and expression analysis of ribosomal L18/L5e gene in Pennisetum glaucum (L.) R. Br. PMID:34121902
Genome-Wide Identification Reveals That Nicotiana benthamiana Hypersensitive Response (HR)-Like Lesion Inducing Protein 4 (NbHRLI4) Mediates Cell Death and Salicylic Acid-Dependent Defense Responses to Turnip Mosaic Virus. PMID:34113359
Multi-targeting of functional cysteines in multiple conserved SARS-CoV-2 domains by clinically safe Zn-ejectors. PMID:34094251
Characterization of an Endolysin Targeting Clostridioides difficile That Affects Spore Outgrowth. PMID:34073633
HERV-K(HML7) Integrations in the Human Genome: Comprehensive Characterization and Comparative Analysis in Non-Human Primates. PMID:34069102
Identification and functional analysis of a galactosyltransferase capable of cholesterol glycolipid formation in the Lyme disease spirochete Borrelia burgdorferi. PMID:34061884
Comparative and evolutionary analyses reveal conservation and divergence of the notch pathway in lophotrochozoa. PMID:34059772
Homozygous mutation in MCM7 causes autosomal recessive primary microcephaly and intellectual disability. PMID:34059554
Genome Wide Analysis of Citrus sinensis Heat Shock Proteins. PMID:34056019
The metabolic profile of Bifidobacterium dentium reflects its status as a human gut commensal. PMID:34030655
Sequence analysis of tyrosine recombinases allows annotation of mobile genetic elements in prokaryotic genomes. PMID:34018328
A Chromosome-Level Genome Assembly of Ephestia elutella (Hübner, 1796) (Lepidoptera: Pyralidae). PMID:34014321
A novel toxoflavin-quenching regulation in bacteria and its application to resistance cultivars. PMID:34009736
Genomic evolution of the class Acidithiobacillia: deep-branching Proteobacteria living in extreme acidic conditions. PMID:34007059
Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling. PMID:33981000
Phylogenetic analysis of the salinipostin γ-butyrolactone gene cluster uncovers new potential for bacterial signalling-molecule diversity. PMID:33979276
Tryptophan Operon Diversity Reveals Evolutionary Trends among Geographically Disparate Chlamydia trachomatis Ocular and Urogenital Strains Affecting Tryptophan Repressor and Synthase Function. PMID:33975934
Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targets. PMID:33971924
Comprehensive discovery of novel structured noncoding RNAs in 26 bacterial genomes. PMID:33970790
Virus-induced gene silencing (VIGS) analysis shows involvement of the LsSTPK gene in lettuce (Lactuca sativaL.) in high temperature-induced bolting. PMID:33955335
Metabolic bifunctionality of Rv0812 couples folate and peptidoglycan biosynthesis in Mycobacterium tuberculosis. PMID:33950161
A Dynamic, Ring-Forming Bactofilin Critical for Maintaining Cell Size in the Obligate Intracellular Bacterium Chlamydia trachomatis. PMID:33941579
Genome-wide characterization and expression and co-expression analysis suggested diverse functions of WOX genes in bread wheat. PMID:33937537
CmMLO17 and its partner CmKIC potentially support Alternaria alternata growth in Chrysanthemum morifolium. PMID:33931614
Comparative Phosphoproteomics of Classical Bordetellae Elucidates the Potential Role of Serine, Threonine and Tyrosine Phosphorylation in Bordetella Biology and Virulence. PMID:33928046
Novel compound heterozygous missense variants (c.G955A and c.A1822C) of CACNA2D4 likely causing autosomal recessive retinitis pigmentosa in a Chinese patient. PMID:33927996
Genome-Wide Analysis of the RAV Transcription Factor Genes in Rice Reveals Their Response Patterns to Hormones and Virus Infection. PMID:33922971
Genome-wide identification and expression analysis of the plant specific LIM genes in Gossypium arboreum under phytohormone, salt and pathogen stress. PMID:33911097
Genome-wide identification of sucrose nonfermenting-1-related protein kinase (SnRK) genes in barley and RNA-seq analyses of their expression in response to abscisic acid treatment. PMID:33902444
A Conserved Phenylalanine Residue of Autographa Californica Multiple Nucleopolyhedrovirus AC75 Protein Is Required for Occlusion Body Formation. PMID:33897676
Physiologists turned Geneticists: Identifying transcripts and genes for neuronal function in the Marbled Crayfish, Procambarus virginalis. PMID:33880091
Expansion and Molecular Characterization of AP2/ERF Gene Family in Wheat (Triticum aestivum L.). PMID:33868370
Cloning, heterologous expression, and characterization of a novel thioesterase from natural sample. PMID:33851045
Origin and evolution of nonulosonic acid synthases and their relationship with bacterial pathogenicity revealed by a large-scale phylogenetic analysis. PMID:33848237
Phenotypic plasticity explains apparent reverse evolution of fat synthesis in parasitic wasps. PMID:33833245
The Selenophosphate Synthetase Gene, selD, Is Important for Clostridioides difficile Physiology. PMID:33820795
The Importance of Therapeutically Targeting the Binary Toxin from Clostridioides difficile. PMID:33805767
QTL Analysis of Adult Plant Resistance to Stripe Rust in a Winter Wheat Recombinant Inbred Population. PMID:33803625
Genome Sequence of the Bacteriophage CL31 and Interaction with the Host Strain Corynebacterium glutamicum ATCC 13032. PMID:33802915
OsCBE1, a Substrate Receptor of Cullin4-Based E3 Ubiquitin Ligase, Functions as a Regulator of Abiotic Stress Response and Productivity in Rice. PMID:33801226
The role of GDP-l-galactose phosphorylase in the control of ascorbate biosynthesis. PMID:33793952
Genome-wide identification and expression analysis of the B-box transcription factor gene family in grapevine (Vitis vinifera L.). PMID:33781207
Holomycin, an Antibiotic Secondary Metabolite, Is Required for Biofilm Formation by the Native Producer Photobacterium galatheae S2753. PMID:33771780
Evolution and Functional Divergence of SUN Genes in Plants. PMID:33763102
A Small Cysteine-Free Protein Acts as a Novel Regulator of Fungal Insect-Pathogenic Lifecycle and Genomic Expression. PMID:33758028
The myxozoan minicollagen gene repertoire was not simplified by the parasitic lifestyle: computational identification of a novel myxozoan minicollagen gene. PMID:33743585
A chromosome-level genome of the spider Trichonephila antipodiana reveals the genetic basis of its polyphagy and evidence of an ancient whole-genome duplication event. PMID:33739402
Autographa Californica Multiple Nucleopolyhedrovirus orf13 Is Required for Efficient Nuclear Egress of Nucleocapsids. PMID:33721216
Genome-Wide Identification and Characterization of bHLH Transcription Factors Related to Anthocyanin Biosynthesis in Red Walnut (Juglans regia L.). PMID:33719341
Isolation of 4-hydroxy 3-methyl 2-butenyl 4-diphosphate reductase (ApHDR) gene of methyl erythritol diphosphate (MEP) pathway, in silico analysis and differential tissue specific ApHDR expression in Andrographis paniculata (Burm. f) Nees. PMID:33707865
The prohibitins (PHB) gene family in tomato: Bioinformatic identification and expression analysis under abiotic and phytohormone stresses. PMID:33678114
Characterization of the Mycovirome of the Phytopathogenic Fungus, Neofusicoccum parvum. PMID:33673510
Structure-Function Relationship Study of a Secretory Amoebic Phosphatase: A Computational-Experimental Approach. PMID:33671604
The Age of Phage: Friend or Foe in the New Dawn of Therapeutic and Biocontrol Applications? PMID:33670836
Comparative Analysis, Characterization and Evolutionary Study of Dirigent Gene Family in Cucurbitaceae and Expression of Novel Dirigent Peptide against Powdery Mildew Stress. PMID:33668231
A Combined Metagenomics and Metatranscriptomics Approach to Unravel Costa Rican Cocoa Box Fermentation Processes Reveals Yet Unreported Microbial Species and Functionalities. PMID:33664725
Diversity roles of CHD1L in normal cell function and tumorigenesis. PMID:33663617
Biosynthesis of 6-Hydroxymellein Requires a Collaborating Polyketide Synthase-like Enzyme. PMID:33661567
HoSeIn: A Workflow for Integrating Various Homology Search Results from Metagenomic and Metatranscriptomic Sequence Datasets. PMID:33659350
Two Novel Endornaviruses Co-infecting a Phytophthora Pathogen of Asparagus officinalis Modulate the Developmental Stages and Fungicide Sensitivities of the Host Oomycete. PMID:33633714
Transcription Factor MAFF (MAF Basic Leucine Zipper Transcription Factor F) Regulates an Atherosclerosis Relevant Network Connecting Inflammation and Cholesterol Metabolism. PMID:33626882
Genome-wide characterization of PEBP family genes in nine Rosaceae tree species and their expression analysis in P. mume. PMID:33622244
Release of Mediator Enzyme β-Hexosaminidase and Modulated Gene Expression Accompany Hemocyte Degranulation in Response to Parasitism in the Silkworm Bombyx mori. PMID:33616803
Subtype-dependent regulation of Gβγ signalling. PMID:33582184
RNAsamba: neural network-based assessment of the protein-coding potential of RNA sequences. PMID:33575571
Identification and characterization of MADS box gene family in pigeonpea for their role during floral transition. PMID:33569264
Genome-Wide Characterization of Lectin Receptor Kinases in Saccharum spontaneum L. and Their Responses to Stagonospora tainanensis Infection. PMID:33567504
Interpretable detection of novel human viruses from genome sequencing data. PMID:33554119
Characterization of prostanoid pathway and the control of its activity by the eyestalk optic ganglion in the female giant freshwater prawn, Macrobrachium rosenbergii. PMID:33553720
Degradation of 1,4-Dioxane by Xanthobacter sp. YN2. PMID:33547937
N-linked glycosylation enzymes in the diatom Thalassiosira oceanica exhibit a diel cycle in transcript abundance and favor for NXT-type sites. PMID:33547363
A Novel Group of Promiscuous Podophages Infecting Diverse Gammaproteobacteria from River Communities Exhibits Dynamic Intergenus Host Adaptation. PMID:33531404
A Highly Contiguous Genome Assembly of a Polyphagous Predatory Mite Stratiolaelaps scimitus (Womersley) (Acari: Laelapidae). PMID:33528489
The genomic characterisation and comparison of Bacillus cereus strains isolated from indoor air. PMID:33516253
An arsRB resistance operon confers tolerance to arsenite in the environmental isolate Terribacillus sp. AE2B 122. PMID:33512483
CE16 acetylesterases: in silico analysis, catalytic machinery prediction and comparison with related SGNH hydrolases. PMID:33505839
Cenote-Taker 2 democratizes virus discovery and sequence annotation. PMID:33505708
Divergent RNA viruses in Macrophomina phaseolina exhibit potential as virocontrol agents. PMID:33505706
A Draft Genome Assembly of Culex pipiens pallens (Diptera: Culicidae) Using PacBio Sequencing. PMID:33501937
Sex steroids and steroidogenesis-related genes in the sea cucumber, Holothuria scabra and their potential role in gonad maturation. PMID:33500499
Evolution of Plant Na+-P-Type ATPases: From Saline Environments to Land Colonization. PMID:33498844
Porphyromonas gingivalis fimbrial protein Mfa5 contains a von Willebrand factor domain and an intramolecular isopeptide. PMID:33495563
Phylogenetic analysis of the caspase family in bivalves: implications for programmed cell death, immune response and development. PMID:33494703
Comparative modelling of a novel enzyme: Mus musculus leucine decarboxylase. PMID:33488196
The complete mitochondrial genome of the pentastomid Armillifer grandis (Pentastomida) from the Democratic Republic of Congo. PMID:33473800
A domain-based vaccine construct against SARS-CoV-2, the causative agent of COVID-19 pandemic: development of self-amplifying mRNA and peptide vaccines. PMID:33469510
Live cell dynamics of production, explosive release and killing activity of phage tail-like weapons for Pseudomonas kin exclusion. PMID:33469108
Genome-wide identification and comprehensive analysis of NAC family genes involved in fruit development in kiwifruit (Actinidia). PMID:33451304
Pantoea stewartii WceF is a glycan biofilm-modifying enzyme with a bacteriophage tailspike-like fold. PMID:33450228
Insights into structure and dynamics of extracellular domain of Toll-like receptor 5 in Cirrhinus mrigala (mrigala): A molecular dynamics simulation approach. PMID:33444377
Genomic signatures of the evolution of defence against its natural enemies in the poisonous and medicinal plant Datura stramonium (Solanaceae). PMID:33441607
Disrupting the Homeostasis of High Mobility Group Protein Promotes the Systemic Movement of Bamboo mosaic virus. PMID:33424893
Bioinformatics resources for SARS-CoV-2 discovery and surveillance. PMID:33416890
Characterization of the Chloroplast Genome Facilitated the Transformation of Parachlorella kessleri-I, A Potential Marine Alga for Biofuel Production. PMID:33414682
Predicting drug-metagenome interactions: Variation in the microbial β-glucuronidase level in the human gut metagenomes. PMID:33411719
In silico comparative analysis of Aeromonas Type VI Secretion System. PMID:33410103
Comparative Analysis of Genome of Ehrlichia sp. HF, a Model Bacterium to Study Fatal Human Ehrlichiosis. PMID:33407096
Genome analysis of Salmonella phage vB_SalM_8-19 (genus Rosemountvirus). PMID:33386871
Genome-wide identification of novel genes involved in Corynebacteriales cell envelope biogenesis using Corynebacterium glutamicum as a model. PMID:33383576
The complete mitochondrial genome of the pentastomid Linguatula arctica (Pentastomida) from reindeer (Rangifer tarandus) in Northern Norway. PMID:33367016
An Educational Bioinformatics Project to Improve Genome Annotation. PMID:33365016
Genome-Wide Identification and Expression Analysis of the Class III Peroxidase Gene Family in Potato (Solanum tuberosum L.). PMID:33343634
Identification and Expression Analysis of the CsMYB Gene Family in Root Knot Nematode-Resistant and Susceptible Cucumbers. PMID:33343619
A Novel Major Pilin Subunit Protein FimM Is Involved in Adhesion of Bifidobacterium longum BBMN68 to Intestinal Epithelial Cells. PMID:33329468
Identification of type VI secretion system toxic effectors using adaptors as markers. PMID:33304467
A horizontally acquired expansin gene increases virulence of the emerging plant pathogen Erwinia tracheiphila. PMID:33303810
Alteration in the Culex pipiens transcriptome reveals diverse mechanisms of the mosquito immune system implicated upon Rift Valley fever phlebovirus exposure. PMID:33301456
Data sets on human histone interaction networks. PMID:33299912
Sensing the interactions between carbohydrate-binding agents and N-linked glycans of SARS-CoV-2 spike glycoprotein using molecular docking and simulation studies. PMID:33292056
Genome-wide characterization of WRKY gene family in Helianthus annuus L. and their expression profiles under biotic and abiotic stresses. PMID:33270651
Genome-wide analysis of HSP90 gene family in the Mediterranean olive (Olea europaea subsp. europaea) provides insight into structural patterns, evolution and functional diversity. PMID:33268931
A class III WRKY transcription factor in sugarcane was involved in biotic and abiotic stress responses. PMID:33262418
Diversification of methanogens into hyperalkaline serpentinizing environments through adaptations to minimize oxidant limitation. PMID:33257813
Evolutionary Understanding of Metacaspase Genes in Cultivated and Wild Oryza Species and Its Role in Disease Resistance Mechanism in Rice. PMID:33256228
Epigenetic Inactivation of the Tumor Suppressor IRX1 Occurs Frequently in Lung Adenocarcinoma and Its Silencing Is Associated with Impaired Prognosis. PMID:33256112
A Sister Lineage of Sampled Retroviruses Corroborates the Complex Evolution of Retroviruses. PMID:33249491
Major SCP/TAPS protein expansion in Lucilia cuprina is associated with novel tandem array organisation and domain architecture. PMID:33246493
CAPRIB: a user-friendly tool to study amino acid changes and selection for the exploration of intra-genus evolution. PMID:33243176
Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two-component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies. PMID:33242236
Genome-Wide Characterization of OFP Family Genes in Wheat (Triticum aestivum L.) Reveals That TaOPF29a-A Promotes Drought Tolerance. PMID:33224986
Comprehensive characterization of the ALMT and MATE families on Populus trichocarpa and gene co-expression network analysis of its members during aluminium toxicity and phosphate starvation stresses. PMID:33214973
CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats. PMID:33206958
Thermogenic hydrocarbon biodegradation by diverse depth-stratified microbial populations at a Scotian Basin cold seep. PMID:33203858
Diversification of Fungal Chitinases and Their Functional Differentiation in Histoplasma capsulatum. PMID:33185664
Identification of Growth Inhibitors of the Fish Pathogen Saprolegnia parasitica Using in silico Subtractive Proteomics, Computational Modeling, and Biochemical Validation. PMID:33178154
Functional Characterization of Facilitative Glucose Transporter 4 With a Delay Responding to Plasma Glucose Level in Blunt Snout Bream (Megalobrama amblycephala). PMID:33178047
A novel Trypanosoma cruzi secreted antigen as a potential biomarker of Chagas disease. PMID:33177582
Genome-wide identification, and phylogenetic and expression profiling analyses, of XTH gene families in Brassica rapa L. and Brassica oleracea L. PMID:33176678
Seasonal and diel patterns of abundance and activity of viruses in the Red Sea. PMID:33172994
Genotypic correlation between post discharge Clostridiodes difficle infection (CDI) and previous unit-based contacts. PMID:33171187
Innovation of heterochromatin functions drives rapid evolution of essential ZAD-ZNF genes in Drosophila. PMID:33169670
Genome-wide identification of the restorer-of-fertility-like (RFL) gene family in Brassica napus and expression analysis in Shaan2A cytoplasmic male sterility. PMID:33148177
Novel Modular Rhodopsins from Green Algae Hold Great Potential for Cellular Optogenetic Modulation Across the Biological Model Systems. PMID:33126644
Sixty-One Volatiles Have Phylogenetic Signals Across Bacterial Domain and Fungal Kingdom. PMID:33101231
Human Histone Interaction Networks: An Old Concept, New Trends. PMID:33098859
Effect of H2A.Z deletion is rescued by compensatory mutations in Fusarium graminearum. PMID:33091009
A novel high performance in-silico screened metagenome-derived alkali-thermostable endo-β-1,4-glucanase for lignocellulosic biomass hydrolysis in the harsh conditions. PMID:33076889
Genome-wide identification of ATP binding cassette (ABC) transporter and heavy metal associated (HMA) gene families in flax (Linum usitatissimum L.). PMID:33076828
Analysis of the Zonula occludens Toxin Found in the Genome of the Chilean Non-toxigenic Vibrio parahaemolyticus Strain PMC53.7. PMID:33072618
Conserved anti-inflammatory effects and sensing of butyrate in zebrafish. PMID:33064972
A Sweep of Earth's Virome Reveals Host-Guided Viral Protein Structural Mimicry and Points to Determinants of Human Disease. PMID:33053371
Loss of intermediate regions of perpendicular body axes contributed to miniaturization of tardigrades. PMID:33043863
Evolutionary aspects of the Viridiplantae nitroreductases. PMID:33025290
Genome-wide characterization and expression analysis suggested diverse functions of the mechanosensitive channel of small conductance-like (MSL) genes in cereal crops. PMID:33024170
New Environment, New Invaders-Repeated Horizontal Transfer of LINEs to Sea Snakes. PMID:33022046
A Missense Mutation in a Large Subunit of Ribonucleotide Reductase Confers Temperature-Gated Tassel Formation. PMID:33020253
Diagnosis, genetic variations, virulence, and toxicity of AHPND-positive Vibrio parahaemolyticus in Penaeus monodon. PMID:33013009
Fatty Acid Synthase Beta Dehydratase in the Lipid Biosynthesis Pathway Is Required for Conidiogenesis, Pigmentation and Appressorium Formation in Magnaporthe oryzae S6. PMID:33007862
Natural variation of root lesion nematode antagonism in the biocontrol fungus Clonostachys rosea and identification of biocontrol factors through genome-wide association mapping. PMID:33005223
Regulatory gene function handoff allows essential gene loss in mosquitoes. PMID:32999445
The Under-explored Extracellular Proteome of Aero-Terrestrial Microalgae Provides Clues on Different Mechanisms of Desiccation Tolerance in Non-Model Organisms. PMID:32989484
Highly efficient gene transfer in the mouse gut microbiota is enabled by the Incl2 conjugative plasmid TP114. PMID:32963323
Extension of the taxonomic coverage of the family GH126 outside Firmicutes and in silico characterization of its non-catalytic terminal domains. PMID:32953382
Novel compound heterozygous nonsense variants, p.L150* and p.Y3565*, of the USH2A gene in a Chinese pedigree are associated with Usher syndrome type IIA. PMID:32945453
Metabolic cooperativity between Porphyromonas gingivalis and Treponema denticola. PMID:32944158
Molecular basis of a new ovine model for human 3M syndrome-2. PMID:32933480
Genome-wide identification and expression analysis of the calmodulin-binding transcription activator (CAMTA) gene family in wheat (Triticum aestivum L.). PMID:32928120
Comparative analyses of saprotrophy in Salisapilia sapeloensis and diverse plant pathogenic oomycetes reveal lifestyle-specific gene expression. PMID:32918444
ILRUN, a Human Plasma Lipid GWAS Locus, Regulates Lipoprotein Metabolism in Mice. PMID:32912065
Antibiotic susceptibility signatures identify potential antimicrobial targets in the Acinetobacter baumannii cell envelope. PMID:32908144
Discovery and characterisation of circular bacteriocin plantacyclin B21AG from Lactiplantibacillus plantarum B21. PMID:32904251
The Salt Tolerance Related Protein (STRP) Mediates Cold Stress Responses and Abscisic Acid Signalling in Arabidopsis thaliana. PMID:32903596
Transcriptomic Analysis of Rhodococcus opacus R7 Grown on o-Xylene by RNA-Seq. PMID:32903390
Fundamentally different repetitive element composition of sex chromosomes in Rumex acetosa. PMID:32902599
Characterization of the Bacteriophage vB_EfaS-271 Infecting Enterococcus faecalis. PMID:32882938
A predicted transmembrane region in plant diacylglycerol acyltransferase 2 regulates specificity toward very-long-chain acyl-CoAs. PMID:32873712
De novo biosynthesis of simple aromatic compounds by an arthropod (Archegozetes longisetosus). PMID:32873199
Diverse enzymatic activities mediate antiviral immunity in prokaryotes. PMID:32855333
A Novel High Glucose-Tolerant β-Glucosidase: Targeted Computational Approach for Metagenomic Screening. PMID:32850705
How Tupanvirus Degrades the Ribosomal RNA of Its Amoebal Host? The Ribonuclease T2 Track. PMID:32849355
MMPphg from the thermophilic Meiothermus bacteriophage MMP17 as a potential antimicrobial agent against both Gram-negative and Gram-positive bacteria. PMID:32843096
Characterization of vB_StuS_MMDA13, a Newly Discovered Bacteriophage Infecting the Agar-Degrading Species Sphingomonas turrisvirgatae. PMID:32824138
FLAVi: An Enhanced Annotator for Viral Genomes of Flaviviridae. PMID:32824044
PINCER: improved CRISPR/Cas9 screening by efficient cleavage at conserved residues. PMID:32821942
Presence of toxin-antitoxin systems in picocyanobacteria and their ecological implications. PMID:32814864
Impact of lifestyle on cytochrome P450 monooxygenase repertoire is clearly evident in the bacterial phylum Firmicutes. PMID:32814804
Molecular characterization and expression patterns of heat shock proteins in Spodoptera littoralis, heat shock or immune response? PMID:32803739
A Fungal Ascorbate Oxidase with Unexpected Laccase Activity. PMID:32796622
QTL Mapping and Marker Development for Tolerance to Sulfur Phytotoxicity in Melon (Cucumis melo). PMID:32793259
Genomic Analysis of Three Cheese-Borne Pseudomonas lactis with Biofilm and Spoilage-Associated Behavior. PMID:32784363
Unravelling Cotton Nonexpressor of Pathogenesis-Related 1(NPR1)-Like Genes Family: Evolutionary Analysis and Putative Role in Fiber Development and Defense Pathway. PMID:32781507
Alterocin, an Antibiofilm Protein Secreted by Pseudoalteromonas sp. Strain 3J6. PMID:32769182
Impact of spatial proximity on territoriality among human skin bacteria. PMID:32764612
Off the wall: The rhyme and reason of Neurospora crassa hyphal morphogenesis. PMID:32743136
Expression of DC-SIGN-like C-Type Lectin Receptors in Salmo salar. PMID:32739503
Transcriptome wide identification and characterization of regulatory genes involved in EAA metabolism and validation through expression analysis in different developmental stages of finger millet spikes. PMID:32728514
Machine-learning approach expands the repertoire of anti-CRISPR protein families. PMID:32728052
The alcohol dehydrogenase gene family in sugarcane and its involvement in cold stress regulation. PMID:32727370
Chemical structure and genetic organization of the E. coli O6:K15 capsular polysaccharide. PMID:32724125
A Distinct Contractile Injection System Gene Cluster Found in a Majority of Healthy Adult Human Microbiomes. PMID:32723799
Identification and Bioinformatic Analysis of the GmDOG1-Like Family in Soybean and Investigation of Their Expression in Response to Gibberellic Acid and Abscisic Acid. PMID:32722147
The Discovery of New Antilisterial Proteins From Paenibacillus polymyxa Kp10 via Genome Mining and Mass Spectrometry. PMID:32714281
The wheat pathogen Zymoseptoria tritici senses and responds to different wavelengths of light. PMID:32711450
Polycystic Kidney Disease Ryanodine Receptor Domain (PKDRR) Proteins in Oomycetes. PMID:32708691
Cloning, Expression, and Immunological Characterization of Formosan Subterranean Termite (Blattodea: Rhinotermitidae) Arginine Kinase. PMID:32706873
Penicillin G acylase production by Mucor griseocyanus and the partial genetic analysis of its pga gene. PMID:32705496
A SnRK1-ZmRFWD3-Opaque2 Signaling Axis Regulates Diurnal Nitrogen Accumulation in Maize Seeds. PMID:32699171
Identification and Molecular Characterization of a New Omono River Virus Isolated from Culex Tritaeniorhynchus in Yunnan, China. PMID:32691306
Identification of the Pseudomonas aeruginosa O17 and O15 O-Specific Antigen Biosynthesis Loci Reveals an ABC Transporter-Dependent Synthesis Pathway and Mechanisms of Genetic Diversity. PMID:32690555
Sequence analysis of nonulosonic acid biosynthetic gene clusters in Vibrionaceae and Moritella viscosa. PMID:32686701
Computer-aided screening for potential TMPRSS2 inhibitors: a combination of pharmacophore modeling, molecular docking and molecular dynamics simulation approaches. PMID:32672528
Identification of candidate tolerance genes to low-temperature during maize germination by GWAS and RNA-seqapproaches. PMID:32664856
The Magnetic Receptor of Monascus ruber M7: Gene Clone and Its Heterologous Expression in Escherichia coli. PMID:32636810
A Comprehensive Coexpression Network Analysis in Vibrio cholerae. PMID:32636337
An update on the origin of SARS-CoV-2: Despite closest identity, bat (RaTG13) and pangolin derived coronaviruses varied in the critical binding site and O-linked glycan residues. PMID:32633815
Wheat Myo-inositol phosphate synthase influences plant growth and stress responses via ethylene mediated signaling. PMID:32612188
Fasciclin-like arabinogalactan gene family in Nicotiana benthamiana: genome-wide identification, classification and expression in response to pathogens. PMID:32611364
Transposons and satellite DNA: on the origin of the major satellite DNA family in the Chenopodium genome. PMID:32607133
Discovery of Two Novel Negeviruses in a Dungfly Collected from the Arctic. PMID:32604989
Genetic Basis of Maize Resistance to Multiple Insect Pests: Integrated Genome-Wide Comparative Mapping and Candidate Gene Prioritization. PMID:32599710
Diverse and unique viruses discovered in the surface water of the East China Sea. PMID:32590932
Diabrotica undecimpunctata virus 2, a Novel Small RNA Virus Discovered from Southern Corn Rootworm, Diabrotica undecimpunctata howardi Barber (Coleoptera: Chrysomelidae). PMID:32586858
Using Cellular Automata to Simulate Domain Evolution in Proteins. PMID:32582278
Genome-wide characterization and expression analyses of the auxin/indole-3-acetic acid (Aux/IAA) gene family in barley (Hordeum vulgare L.). PMID:32581321
Construction, analysis and validation of co-expression network to understand stress adaptation in Deinococcus radiodurans R1. PMID:32579573
The bacterial copper resistance protein CopG contains a cysteine-bridged tetranuclear copper cluster. PMID:32571874
Mitochondrial CLPP2 Assists Coordination and Homeostasis of Respiratory Complexes. PMID:32571844
Characterization of Extremely Drug-Resistant and Hypervirulent Acinetobacter baumannii AB030. PMID:32560407
MifS, a DctB family histidine kinase, is a specific regulator of α-ketoglutarate response in Pseudomonas aeruginosa PAO1. PMID:32553056
Bioinformatics analysis of BBX family genes and its response to UV-B in Arabidopsis thaliana. PMID:32552524
Biochemical and Genetic Analysis of 4-Hydroxypyridine Catabolism in Arthrobacter sp. Strain IN13. PMID:32545463
β-Strand-mediated interactions of protein domains. PMID:32543729
Molecular insights into the powerful mucus-based adhesion of limpets (Patella vulgata L.). PMID:32543352
Genome-wide analysis of proline-rich extension-like receptor protein kinase (PERK) in Brassica rapa and its association with the pollen development. PMID:32539701
Efficient targeted mutagenesis in allotetraploid sweet basil by CRISPR/Cas9. PMID:32537560
Another Breaker of the Wall: the Biological Function of the Usp45 Protein of Lactococcus lactis. PMID:32532874
Genome-Wide Identification and Characterization of Vacuolar Processing Enzyme Gene Family and Diverse Expression Under Stress in Apple (Malus × Domestic). PMID:32528498
In Silico Elucidation of Deleterious Non-synonymous SNPs in SHANK3, the Autism Spectrum Disorder Gene. PMID:32519210
Alteromonas Myovirus V22 Represents a New Genus of Marine Bacteriophages Requiring a Tail Fiber Chaperone for Host Recognition. PMID:32518192
Animal biosynthesis of complex polyketides in a photosynthetic partnership. PMID:32513940
The Kinase USK1 Regulates Cellulase Gene Expression and Secondary Metabolite Biosynthesis in Trichoderma reesei. PMID:32508786
Evolutionary significance of amino acid permease transporters in 17 plants from Chlorophyta to Angiospermae. PMID:32503414
Obtaining extremely large and accurate protein multiple sequence alignments from curated hierarchical alignments. PMID:32500917
Defining Critical Genes During Spherule Remodeling and Endospore Development in the Fungal Pathogen, Coccidioides posadasii. PMID:32499817
The Basic Leucine Zipper Transcription Factor PlBZP32 Associated with the Oxidative Stress Response Is Critical for Pathogenicity of the Lychee Downy Blight Oomycete Peronophythora litchii. PMID:32493721
Novel insights into the Thaumarchaeota in the deepest oceans: their metabolism and potential adaptation mechanisms. PMID:32482169
Increased Otolin-1 in Serum as a Potential Biomarker for Idiopathic Benign Paroxysmal Positional Vertigo Episodes. PMID:32477244
Phylogenomic synteny network analyses reveal ancestral transpositions of auxin response factor genes in plants. PMID:32467718
The DNA methylation landscape of giant viruses. PMID:32461636
Specificities and functional coordination between the two Cas6 maturation endonucleases in Anabaena sp. PCC 7120 assign orphan CRISPR arrays to three groups. PMID:32453626
Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure. PMID:32449750
A case of Usher syndrome type IIA caused by a rare USH2A homozygous frameshift variant with maternal uniparental disomy (UPD) in a Chinese family. PMID:32449591
GeneMark-EP+: eukaryotic gene prediction with self-training in the space of genes and proteins. PMID:32440658
Novel compound heterozygous EYS variants may be associated with arRP in a large Chinese pedigree. PMID:32436957
Genome-wide identification of the expansin gene family reveals that expansin genes are involved in fibre cell growth in cotton. PMID:32429837
Molecular and Functional Characterization of Elovl4 Genes in Sparus aurata and Solea senegalensis Pointing to a Critical Role in Very Long-Chain (>C24) Fatty Acid Synthesis during Early Neural Development of Fish. PMID:32429178
MetaSanity: an integrated microbial genome evaluation and annotation pipeline. PMID:32426808
Targeted Next-Generation Sequencing Identified Novel Compound Heterozygous Variants in the CDH23 Gene Causing Usher Syndrome Type ID in a Chinese Patient. PMID:32425987
Genome-Wide Analysis of the GRAS Gene Family in Barley (Hordeum vulgare L.). PMID:32423019
The Role of the Flagellar Protein FlgJ in the Virulence of Brucella abortus. PMID:32411617
PLANT NATRIURETIC PEPTIDE A and Its Putative Receptor PNP-R2 Antagonize Salicylic Acid-Mediated Signaling and Cell Death. PMID:32409317
Decoding the vital segments in human ATP-dependent RNA helicase. PMID:32405168
Chloroplast Sec14-like 1 (CPSFL1) is essential for normal chloroplast development and affects carotenoid accumulation in Chlamydomonas. PMID:32404426
Automated Cell-Free Multiprotein Synthesis Facilitates the Identification of a Secretory, Oligopeptide Elicitor-Like, Immunoreactive Protein of the Oomycete Pythium insidiosum. PMID:32398276
Identification and Evolution of the WUSCHEL-Related Homeobox Protein Family in Bambusoideae. PMID:32397500
Characterization of an Ecdysteroid-Regulated 16 kDa Protein Gene in Chinese Oak Silkworm, Antheraea pernyi (Lepidoptera: Saturniidae). PMID:32396202
The First Draft Genome of the Plasterer Bee Colletes gigas (Hymenoptera: Colletidae: Colletes). PMID:32386319
Telomeric and sub-telomeric regions undergo rapid turnover within a Streptomyces population. PMID:32382084
Phages Actively Challenge Niche Communities in Antarctic Soils. PMID:32371471
Lysine Acetyltransferase p300/CBP Plays an Important Role in Reproduction, Embryogenesis and Longevity of the Pea Aphid Acyrthosiphon pisum. PMID:32357443
Dual histone methyl reader ZCWPW1 facilitates repair of meiotic double strand breaks in male mice. PMID:32352380
Functional Characterization of Lysophosphatidylcholine: Acyl-CoA Acyltransferase Genes From Sunflower (Helianthus annuus L.). PMID:32351524
Actinobacterial Degradation of 2-Hydroxyisobutyric Acid Proceeds via Acetone and Formyl-CoA by Employing a Thiamine-Dependent Lyase Reaction. PMID:32351493
Pathogenomes of Atypical Non-shigatoxigenic Escherichia coli NSF/SF O157:H7/NM: Comprehensive Phylogenomic Analysis Using Closed Genomes. PMID:32351476
Modulation of Peptidoglycan Synthesis by Recycled Cell Wall Tetrapeptides. PMID:32348759
Absence of the highly expressed small carbohydrate-binding protein Cgt improves the acarbose formation in Actinoplanes sp. SE50/110. PMID:32346757
A widespread toxin-antitoxin system exploiting growth control via alarmone signaling. PMID:32345719
Comprehensive Analysis of HERV Transcriptome in HIV+ Cells: Absence of HML2 Activation and General Downregulation of Individual HERV Loci. PMID:32340287
MiDaf16-like and MiSkn1-like gene families are reliable targets to develop biotechnological tools for the control and management of Meloidogyne incognita. PMID:32332904
Genome-wide identification and functional analysis of ARF transcription factors in Brassica juncea var. tumida. PMID:32320456
Wss1 homolog from Candida albicans and its role in DNA-protein crosslink tolerance. PMID:32302440
Transcriptomic analysis of polyketide synthases in a highly ciguatoxic dinoflagellate, Gambierdiscus polynesiensis and low toxicity Gambierdiscus pacificus, from French Polynesia. PMID:32294110
A novel frameshift variant in SON causes Zhu-Tokita-Takenouchi-Kim Syndrome. PMID:32291808
An NCBP3-Domain Protein Mediates Meiotic Silencing by Unpaired DNA. PMID:32291289
Ste20 is crucial for dimorphic switching of sporothrix schenckii and affects its global transcriptome. PMID:32269678
Histidine-Triad Hydrolases Provide Resistance to Peptide-Nucleotide Antibiotics. PMID:32265328
Characterization of the AP2/ERF Transcription Factor Family and Expression Profiling of DREB Subfamily under Cold and Osmotic Stresses in Ammopiptanthus nanus. PMID:32260365
Subtilisin-like Pr1 proteases marking the evolution of pathogenicity in a wide-spectrum insect-pathogenic fungus. PMID:32253991
Crystallographic and kinetic analyses of the FdsBG subcomplex of the cytosolic formate dehydrogenase FdsABG from Cupriavidus necator. PMID:32249211
Re-annotation of the Theileria parva genome refines 53% of the proteome and uncovers essential components of N-glycosylation, a conserved pathway in many organisms. PMID:32245418
Deep evolutionary analysis reveals the design principles of fold A glycosyltransferases. PMID:32234211
Identification, molecular characteristics, and tissue differential expression of DGAT2 full-CDS cDNA sequence in Binglangjiang buffalo (Bubalus bubalis). PMID:32232120
Egyptian Rousette IFN-ω Subtypes Elicit Distinct Antiviral Effects and Transcriptional Responses in Conspecific Cells. PMID:32231668
The Circadian Clock Gene, TaPRR1, Is Associated With Yield-Related Traits in Wheat (Triticum aestivum L.). PMID:32226438
Long-Read Genome Sequencing and Assembly of Leptopilina boulardi: A Specialist Drosophila Parasitoid. PMID:32217632
Novel approach in whole genome mining and transcriptome analysis reveal conserved RiPPs in Trichoderma spp. PMID:32216757
Functional Annotation and Curation of Hypothetical Proteins Present in A Newly Emerged Serotype 1c of Shigella flexneri: Emphasis on Selecting Targets for Virulence and Vaccine Design Studies. PMID:32210046
The TMEM189 gene encodes plasmanylethanolamine desaturase which introduces the characteristic vinyl ether double bond into plasmalogens. PMID:32209662
Deep phosphoproteome analysis of Schistosoma mansoni leads development of a kinomic array that highlights sex-biased differences in adult worm protein phosphorylation. PMID:32203512
Beta-Hydroxysteroid Dehydrogenase Genes in Orange-Spotted Grouper (Epinephelus coioides): Genome-Wide Identification and Expression Analysis During Sex Reversal. PMID:32194632
Pseudo-Symmetric Assembly of Protodomains as a Common Denominator in the Evolution of Polytopic Helical Membrane Proteins. PMID:32189026
Anthoceros genomes illuminate the origin of land plants and the unique biology of hornworts. PMID:32170292
Multifunctional Acidocin 4356 Combats Pseudomonas aeruginosa through Membrane Perturbation and Virulence Attenuation: Experimental Results Confirm Molecular Dynamics Simulation. PMID:32169940
A novel class of polymorphic toxins in Bacteroidetes. PMID:32169897
SNPeffect: identifying functional roles of SNPs using metabolic networks. PMID:32167625
Global phenotypic profiling identifies a conserved actinobacterial cofactor for a bifunctional PBP-type cell wall synthase. PMID:32167475
Comparative transcriptomic analysis reveals novel roles of transcription factors and hormones during the flowering induction and floral bud differentiation in sweet cherry trees (Prunus avium L. cv. Bing). PMID:32163460
A method for CRISPR/Cas9 mutation of genes in fathead minnow (Pimephales promelas). PMID:32160575
Rv0579 Is Involved in the Resistance to the TP053 Antitubercular Prodrug. PMID:32158439
Structure-Function Studies and Mechanism of Action of Snake Venom L-Amino Acid Oxidases. PMID:32158389
A bifunctional O-antigen polymerase structure reveals a new glycosyltransferase family. PMID:32152541
Comparative genomics analysis of c-di-GMP metabolism and regulation in Microcystis aeruginosa. PMID:32151246
Evolutionary and Molecular Characterization of liver-enriched gene 1. PMID:32144352
Mycoparasitism illuminated by genome and transcriptome sequencing of Coniothyrium minitans, an important biocontrol fungus of the plant pathogen Sclerotinia sclerotiorum. PMID:32141811
Genome-wide identification of Diacylglycerol Acyltransferases (DGAT) family genes influencing Milk production in Buffalo. PMID:32138658
Arabidopsis RanBP2-Type Zinc Finger Proteins Related to Chloroplast RNA Editing Factor OZ1. PMID:32121603
Passion Fruit Green Spot Virus Genome Harbors a New Orphan ORF and Highlights the Flexibility of the 5'-End of the RNA2 Segment Across Cileviruses. PMID:32117189
Characterization of a bacteriophage, vB_Eco4M-7, that effectively infects many Escherichia coli O157 strains. PMID:32111934
The Uropathogenic Specific Protein Gene usp from Escherichia coli and Salmonella bongori is a Novel Member of the TyrR and H-NS Regulons. PMID:32111072
A comparative genomics methodology reveals a widespread family of membrane-disrupting T6SS effectors. PMID:32109231
Characterization of a Novel Rice Dynamic Narrow-Rolled Leaf Mutant with Deficiencies in Aromatic Amino Acids. PMID:32102218
Characterization of a Unique Bordetella bronchiseptica vB_BbrP_BB8 Bacteriophage and Its Application as an Antibacterial Agent. PMID:32093105
Targeted induction of a silent fungal gene cluster encoding the bacteria-specific germination inhibitor fumigermin. PMID:32083553
Two Phytophthora parasitica cysteine protease genes, PpCys44 and PpCys45, trigger cell death in various Nicotiana spp. and act as virulence factors. PMID:32077241
More than a Corepressor: The Role of CoREST Proteins in Neurodevelopment. PMID:32075869
Genetic variants in the TORC2 gene promoter and their association with body measurement and carcass quality traits in Qinchuan cattle. PMID:32059009
Molecular characterization of teosinte branched1 gene governing branching architecture in cultivated maize and wild relatives. PMID:32058540
MicroRNAs regulate innate immunity against uropathogenic and commensal-like Escherichia coli infections in the surrogate insect model Galleria mellonella. PMID:32054914
A secreted protein of 15 kDa plays an important role in Phytophthora palmivora development and pathogenicity. PMID:32047196
Comparative genome characterization of the periodontal pathogen Tannerella forsythia. PMID:32046654
A synthetic Pur-based peptide binds and alters G-quadruplex secondary structure present in the expanded RNA repeat of C9orf72 ALS/FTD. PMID:32035967
The identification of tick autophagy-related genes in Ixodes scapularis responding to amino acid starvation. PMID:32035896
Identification and characterization of novel filament-forming proteins in cyanobacteria. PMID:32024928
Systematic Analysis of the DNA Methylase and Demethylase Gene Families in Rapeseed (Brassica napus L.) and Their Expression Variations After Salt and Heat stresses. PMID:32023925
Identification and characterization of ERV-W-like sequences in Platyrrhini species provides new insights into the evolutionary history of ERV-W in primates. PMID:32021657
Mining Natural Product Biosynthesis in Eukaryotic Algae. PMID:32019095
Genome-based analysis for the bioactive potential of Streptomyces yeochonensis CN732, an acidophilic filamentous soil actinobacterium. PMID:32013859
Genomic Characterization, Formulation and Efficacy in Planta of a Siphoviridae and Podoviridae Protection Cocktail against the Bacterial Plant Pathogens Pectobacterium spp. PMID:32012814
Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding. PMID:32007145
Hemocyanin of the caenogastropod Pomacea canaliculata exhibits evolutionary differences among gastropod clades. PMID:31999773
Redundancy and Specificity of Type VI Secretion vgrG Loci in Antibacterial Activity of Agrobacterium tumefaciens 1D1609 Strain. PMID:31993035
Genome-Wide Identification, Expression Profile of the TIFY Gene Family in Brassica oleracea var. capitata, and Their Divergent Response to Various Pathogen Infections and Phytohormone Treatments. PMID:31991606
Complete genome sequence of Bifidobacterium adolescentis P2P3, a human gut bacterium possessing strong resistant starch-degrading activity. PMID:31988825
Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities. PMID:31988474
Transposon Mutagenesis Screen of Klebsiella pneumoniae Identifies Multiple Genes Important for Resisting Antimicrobial Activities of Neutrophils in Mice. PMID:31988174
Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing. PMID:31986137
The C. difficile toxin B membrane translocation machinery is an evolutionarily conserved protein delivery apparatus. PMID:31974369
Molecular Evolution of the Glutathione S-Transferase Family in the Bemisia tabaci Species Complex. PMID:31971586
Comprehensive Analyses of Cytochrome P450 Monooxygenases and Secondary Metabolite Biosynthetic Gene Clusters in Cyanobacteria. PMID:31963856
Genome-Wide Investigation of Heat Shock Transcription Factor Family in Wheat (Triticum aestivum L.) and Possible Roles in Anther Development. PMID:31963482
Genome-wide survey and expression analysis of calcium-dependent protein kinase (CDPK) in grass Brachypodium distachyon. PMID:31948407
Growth Mode and Physiological State of Cells Prior to Biofilm Formation Affect Immune Evasion and Persistence of Staphylococcus aureus. PMID:31940921
Oxygen-dependent asparagine hydroxylation of the ubiquitin-associated (UBA) domain in Cezanne regulates ubiquitin binding. PMID:31937588
Identification of the cleavage sites leading to the shed forms of human and mouse anti-aging and cognition-enhancing protein Klotho. PMID:31929539
Molecular and genomic characterization of a novel equine molluscum contagiosum-like virus. PMID:31922947
Evidence of a Cellulosic Layer in Pandoravirus massiliensis Tegument and the Mystery of the Genetic Support of Its Biosynthesis. PMID:31921087
Identification of a genome-specific repetitive element in the Gossypium D genome. PMID:31915591
Harvesting of Prebiotic Fructooligosaccharides by Nonbeneficial Human Gut Bacteria. PMID:31915220
Presence and structure-activity relationship of intrinsically disordered regions across mucins. PMID:31908009
Looking for the X Factor in Bacterial Pathogenesis: Association of orfX-p47 Gene Clusters with Toxin Genes in Clostridial and Non-Clostridial Bacterial Species. PMID:31906154
Intestinal colonization of genotoxic Escherichia coli strains encoding colibactin and cytotoxic necrotizing factor in small mammal pets. PMID:31902483
Structure of the cell-binding component of the Clostridium difficile binary toxin reveals a di-heptamer macromolecular assembly. PMID:31896582
Plasticizer Degradation by Marine Bacterial Isolates: A Proteogenomic and Metabolomic Characterization. PMID:31894974
Improving hydrocarbon production by engineering cyanobacterial acyl-(acyl carrier protein) reductase. PMID:31890019
Genome-wide identification and expression analysis of the PHD-finger gene family in Solanum tuberosum. PMID:31881057
Decrypting tubby-like protein gene family of multiple functions in starch root crop cassava. PMID:31871614
Rap Protein Paralogs of Bacillus thuringiensis: a Multifunctional and Redundant Regulatory Repertoire for the Control of Collective Functions. PMID:31871034
Genome-Wide Characterization and Gene Expression Analyses of GATA Transcription Factors in Moso Bamboo (Phyllostachys edulis). PMID:31861396
NCBI's Conserved Domain Database and Tools for Protein Domain Analysis. PMID:31851420
The Staphylococcus aureus Cystine Transporters TcyABC and TcyP Facilitate Nutrient Sulfur Acquisition during Infection. PMID:31843961
New Genus Fibralongavirus in Siphoviridae Phages of Staphylococcus pseudintermedius. PMID:31835553
Exploration of the propagation of transpovirons within Mimiviridae reveals a unique example of commensalism in the viral world. PMID:31822788
Entosis and apical cell extrusion constitute a tumor-suppressive mechanism downstream of Matriptase. PMID:31819976
Accurate annotation of human protein-coding small open reading frames. PMID:31819274
WormCat: An Online Tool for Annotation and Visualization of Caenorhabditis elegans Genome-Scale Data. PMID:31810987
The X chromosome of the German cockroach, Blattella germanica, is homologous to a fly X chromosome despite 400 million years divergence. PMID:31806031
Mitochondrial Citrate Transport System in the Fungus Mucor circinelloides: Identification, Phylogenetic Analysis, and Expression Profiling During Growth and Lipid Accumulation. PMID:31802201
Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei. PMID:31799430
A Conserved Regulatory Circuit Controls Large Adhesins in Vibrio cholerae. PMID:31796544
Origin and Evolution of Two Independently Duplicated Genes Encoding UDP- Glucose: Glycoprotein Glucosyltransferases in Caenorhabditis and Vertebrates. PMID:31796523
Analysis of glycoside hydrolases from oat (Avena sativa) seedling extract. PMID:31787817
Identification of a novel germline BRCA2 variant in a Chinese breast cancer family. PMID:31782247
Isolation, characterization and in silico analysis of 3-Hydroxy-3-methylglutaryl-coenzyme A reductase (HMGR) gene from Andrographis paniculata (Burm. f) Nees. PMID:31781917
CDD/SPARCLE: the conserved domain database in 2020. PMID:31777944
Identification and evolution of avian endogenous foamy viruses. PMID:31777663
Structural and functional insights into the Diabrotica virgifera virgifera ATP-binding cassette transporter gene family. PMID:31775611
Functional conservation of RecQ helicase BLM between humans and Drosophila melanogaster. PMID:31772289
Towards Exploring Toxin-Antitoxin Systems in Geobacillus: A Screen for Type II Toxin-Antitoxin System Families in a Thermophilic Genus. PMID:31771094
A Novel Alkaline Phosphatase/Phosphodiesterase, CamPhoD, from Marine Bacterium Cobetia amphilecti KMM 296. PMID:31766749
Deciphering Molecular Virulence Mechanism of Mycobacterium tuberculosis Dop isopeptidase Based on Its Sequence-Structure-Function Linkage. PMID:31760575
The effector GpRbp-1 of Globodera pallida targets a nuclear HECT E3 ubiquitin ligase to modulate gene expression in the host. PMID:31756029
Comparative genomics reveals a novel genetic organization of the sad cluster in the sulfonamide-degrader 'Candidatus Leucobacter sulfamidivorax' strain GP. PMID:31752666
Self-identity barcodes encoded by six expansive polymorphic toxin families discriminate kin in myxobacteria. PMID:31744876
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology. PMID:31740763
Mapping Epitopes of a Novel Peptidoglycan Cross-Linking Enzyme Cwp22 Recognized by Human Sera Obtained from Patients with Clostridioides difficile Infection and Cord Blood. PMID:31739602
Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110. PMID:31736895
Mutations in ANKLE2, a ZIKA Virus Target, Disrupt an Asymmetric Cell Division Pathway in Drosophila Neuroblasts to Cause Microcephaly. PMID:31735666
Comprehensive Analysis of the Chitinase Gene Family in Cucumber (Cucumis sativus L.): From Gene Identification and Evolution to Expression in Response to Fusarium oxysporum. PMID:31731414
Alien Domains Shaped the Modular Structure of Plant NLR Proteins. PMID:31730154
Cell-Wall Hydrolases as Antimicrobials against Staphylococcus Species: Focus on Sle1. PMID:31726796
Deciphering the unique cellulose degradation mechanism of the ruminal bacterium Fibrobacter succinogenes S85. PMID:31719545
The mixed liver and heart transcriptome dataset of the New Zealand brushtail possum, Trichosurus vulpecula. PMID:31700950
A transmembrane domain of Andrias davidianus ranavirus 13R is crucial for co-localization to endoplasmic reticulum and viromatrix. PMID:31696038
SUMOylated SNF2PH promotes variant surface glycoprotein expression in bloodstream trypanosomes. PMID:31693280
Knockdown of ghAlba_4 and ghAlba_5 Proteins in Cotton Inhibits Root Growth and Increases Sensitivity to Drought and Salt Stresses. PMID:31681384
Genome-Wide Identification and Analysis of the AP2 Transcription Factor Gene Family in Wheat (Triticum aestivum L.). PMID:31681381
Identification of candidate ATP-binding cassette transporter gene family members in Diaphorina citri (Hemiptera: Psyllidae) via adult tissues transcriptome analysis. PMID:31676883
Immune Suppressive Extracellular Vesicle Proteins of Leptopilina heterotoma Are Encoded in the Wasp Genome. PMID:31676506
The subcellular localization of bHLH transcription factor TCF4 is mediated by multiple nuclear localization and nuclear export signals. PMID:31666615
Second messengers and divergent HD-GYP phosphodiesterases regulate 3',3'-cGAMP signaling. PMID:31665539
MaGenDB: a functional genomics hub for Malvaceae plants. PMID:31665439
Isolation and Genome Sequencing of a Novel Pseudomonas aeruginosa Phage PA-YS35. PMID:31664502
Diversity and Horizontal Transfer of Antarctic Pseudomonas spp. Plasmids. PMID:31661808
Molecular and Biological Characterization of a New Strawberry Cytorhabdovirus. PMID:31653104
A novel missense variant c.G644A (p.G215E) of the RPGR gene in a Chinese family causes X-linked retinitis pigmentosa. PMID:31652454
Expansion of phycobilisome linker gene families in mesophilic red algae. PMID:31645564
Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature acclimation. PMID:31641221
Genome-Based Metabolic Reconstruction of a Novel Uncultivated Freshwater Magnetotactic coccus "Ca. Magnetaquicoccus inordinatus" UR-1, and Proposal of a Candidate Family "Ca. Magnetaquicoccaceae". PMID:31632385
Phage-centric ecological interactions in aquatic ecosystems revealed through ultra-deep metagenomics. PMID:31630686
Pangenome of Acinetobacter baumannii uncovers two groups of genomes, one of them with genes involved in CRISPR/Cas defence systems associated with the absence of plasmids and exclusive genes for biofilm formation. PMID:31626589
Characterization of Cronartium ribicola dsRNAs reveals novel members of the family Totiviridae and viral association with fungal virulence. PMID:31623644
Gene Expression Profiling Reveals Enhanced Defense Responses in an Invasive Weed Compared to Its Native Congener During Pathogenesis. PMID:31623404
Regulation of Amino Acid Transport in Saccharomyces cerevisiae. PMID:31619504
Identification of an Integrase That Responsible for Precise Integration and Excision of Riemerella anatipestifer Genomic Island. PMID:31616389
A Single Transcription Factor (PDD1) Determines Development and Yield of Winter Mushroom (Flammulina velutipes). PMID:31604770
Conjugative Transfer of IncP-9 Catabolic Plasmids Requires a Previously Uncharacterized Gene, mpfK, Whose Homologs Are Conserved in Various MPFT-Type Plasmids. PMID:31604768
Crystal structure of ErmE - 23S rRNA methyltransferase in macrolide resistance. PMID:31601908
Genome-wide investigation of superoxide dismutase (SOD) gene family and their regulatory miRNAs reveal the involvement in abiotic stress and hormone response in tea plant (Camellia sinensis). PMID:31600284
Novel functional proteins coded by the human genome discovered in metastases of melanoma patients. PMID:31599373
Clade II Candida auris possess genomic structural variations related to an ancestral strain. PMID:31596885
Coding-Complete Genome Sequence of a Pollen-Associated Virus Belonging to the Secoviridae Family Recovered from a Japanese Apricot (Prunus mume) Metagenome Data Set. PMID:31582454
Complete Genome Sequence of Cycloclasticus sp. Strain PY97N, Which Includes Two Heavy Metal Resistance Genomic Islands. PMID:31582435
Identification of a transforming growth factor-β type I receptor transcript in Eriocheir sinensis and its molting-related expression in muscle tissues. PMID:31571110
Whole-Genome Sequencing Redefines Shewanella Taxonomy. PMID:31555221
Transposable element discovery and characterization of LTR-retrotransposon evolutionary lineages in the tropical fruit species Passiflora edulis. PMID:31549373
Maize sugary enhancer1 (se1) is a gene affecting endosperm starch metabolism. PMID:31548423
Prospecting for microbial α-N-acetylgalactosaminidases yields a new class of GH31 O-glycanase. PMID:31530641
NCBI's Virus Discovery Hackathon: Engaging Research Communities to Identify Cloud Infrastructure Requirements. PMID:31527408
Predicting Sequence Features, Function, and Structure of Proteins Using MESSA. PMID:31524991
Characterization of natural genetic variation identifies multiple genes involved in salt tolerance in maize. PMID:31522293
Computational and experimental analysis of the glycophosphatidylinositol-anchored proteome of the human parasitic nematode Brugia malayi. PMID:31513600
Core set construction and association analysis of Pinus massoniana from Guangdong province in southern China using SLAF-seq. PMID:31511632
Metagenomes from Coastal Marine Sediments Give Insights into the Ecological Role and Cellular Features of Loki- and Thorarchaeota. PMID:31506313
Group A, B, C, and G Streptococcus Lancefield antigen biosynthesis is initiated by a conserved α-d-GlcNAc-β-1,4-l-rhamnosyltransferase. PMID:31506299
Hemimetabolous insects elucidate the origin of sexual development via alternative splicing. PMID:31478483
SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes. PMID:31477007
Disease-Causing Mutations in SF3B1 Alter Splicing by Disrupting Interaction with SUGP1. PMID:31474574
A Structure-Informed Atlas of Human-Virus Interactions. PMID:31474372
GPT2 mutations in autosomal recessive developmental disability: extending the clinical phenotype and population prevalence estimates. PMID:31471722
The Role of Active-Site Residues Phe98, His239, and Arg243 in DNA Binding and in the Catalysis of Human Uracil-DNA Glycosylase SMUG1. PMID:31466351
Molecular Dating of the Emergence of Anaerobic Rumen Fungi and the Impact of Laterally Acquired Genes. PMID:31455637
Identification and in Silico Characterization of GT Factors Involved in Phytohormone and Abiotic Stresses Responses in Brachypodium distachyon. PMID:31450734
A Quorum-Sensing Inhibitor Strain of Vibrio alginolyticus Blocks Qs-Controlled Phenotypes in Chromobacterium violaceum and Pseudomonas aeruginosa. PMID:31450549
Bacteriocin Occurrence and Activity in Escherichia coli Isolated from Bovines and Wastewater. PMID:31443193
MYORG Mutations: a Major Cause of Recessive Primary Familial Brain Calcification. PMID:31440850
A Strain of Bacillus thuringiensis Containing a Novel cry7Aa2 Gene that Is Toxic to Leptinotarsa decemlineata (Say) (Coleoptera: Chrysomelidae). PMID:31438609
Characteristics and Functions of the Yip1 Domain Family (YIPF), Multi-Span Transmembrane Proteins Mainly Localized to the Golgi Apparatus. PMID:31417902
Large-Scale Analyses of Human Microbiomes Reveal Thousands of Small, Novel Genes. PMID:31402174
Cassava AGPase genes and their encoded proteins are different from those of other plants. PMID:31399791
Mouse TMCO5 is localized to the manchette microtubules involved in vesicle transfer in the elongating spermatids. PMID:31393949
Inhibition of L. monocytogenes Biofilm Formation by the Amidase Domain of the Phage vB_LmoS_293 Endolysin. PMID:31390848
Combining sequencing approaches to fully resolve a carbapenemase-encoding megaplasmid in a Pseudomonas shirazica clinical strain. PMID:31381486
Tomato Dynamin Related Protein 2A Associates With LeEIX2 and Enhances PRR Mediated Defense by Modulating Receptor Trafficking. PMID:31379912
Comparative genome analysis of Lactobacillus mudanjiangensis, an understudied member of the Lactobacillus plantarum group. PMID:31368886
Modulation of Toxin-Antitoxin System Rnl AB Type II in Phage-Resistant Gammaproteobacteria Surviving Photodynamic Treatment. PMID:31360364
Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype. PMID:31356623
Extreme Diversity of Mycoviruses Present in Isolates of Rhizoctonia solani AG2-2 LP From Zoysia japonica From Brazil. PMID:31355150
Toxoplasma F-box protein 1 is required for daughter cell scaffold function during parasite replication. PMID:31348812
Complete Genome Sequence of Enterotoxigenic Escherichia coli Myophage LL12. PMID:31346027
The multi PAM2 protein Upa2 functions as novel core component of endosomal mRNA transport. PMID:31338952
Expansion of base excision repair compensates for a lack of DNA repair by oxidative dealkylation in budding yeast. PMID:31320474
geneHummus: an R package to define gene families and their expression in legumes and beyond. PMID:31319791
Combined alignments of sequences and domains characterize unknown proteins with remotely related protein search PSISearch2D. PMID:31317184
Molecular and Biochemical Characterization of a Bimodular Xylanase From Marinifilaceae Bacterium Strain SPP2. PMID:31312196
Clinical Persistence of Chlamydia trachomatis Sexually Transmitted Strains Involves Novel Mutations in the Functional αββα Tetramer of the Tryptophan Synthase Operon. PMID:31311884
Environmental conditions shape the nature of a minimal bacterial genome. PMID:31308405
Phylogenetic analysis and embryonic expression of panarthropod Dmrt genes. PMID:31303887
A GntR-Like Transcription Factor HypR Regulates Expression of Genes Associated With L-Hydroxyproline Utilization in Streptomyces coelicolor A3(2). PMID:31297104
PadR-type repressors controlling production of a non-canonical FtsW/RodA homologue and other trans-membrane proteins. PMID:31296881
Understanding the Role of the WRKY Gene Family under Stress Conditions in Pigeonpea (Cajanus Cajan L.). PMID:31295921
CASP13 target classification into tertiary structure prediction categories. PMID:31294862
Structural characterization of Treponema pallidum Tp0225 reveals an unexpected leucine-rich repeat architecture. PMID:31282868
A divergent strain of melon chlorotic spot virus isolated from black medic (Medicago lupulina) in Austria. PMID:31277670
Skeletal Mineralization in Association with Type X Collagen Expression Is an Ancestral Feature for Jawed Vertebrates. PMID:31270539
Complete Genome Sequence of Enterotoxigenic Escherichia coli Siphophage LL5. PMID:31270204
PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database. PMID:31267135
Ancient duplications and grass-specific transposition influenced the evolution of LEAFY transcription factor genes. PMID:31263781
Varroa destructor parasitism has a greater effect on proteome changes than the deformed wing virus and activates TGF-β signaling pathways. PMID:31253851
A Novel Subfamily of Endo-β-1,4-Glucanases in Glycoside Hydrolase Family 10. PMID:31253686
Transcriptional profiling of spiny lobster metamorphosis reveals three new additions to the nuclear receptor superfamily. PMID:31253104
TYR Gene in Llamas: Polymorphisms and Expression Study in Different Color Phenotypes. PMID:31249599
Genome-Wide Identification and Homoeologous Expression Analysis of PP2C Genes in Wheat (Triticum aestivum L.). PMID:31249596
Genomic Characterization of the Emerging Pathogen Streptococcus pseudopneumoniae. PMID:31239383
Mutual editing of alternative splicing between breast cancer cells and macrophages. PMID:31233192
Genome-wide analyses of the bHLH gene family reveals structural and functional characteristics in the aquatic plant Nelumbo nucifera. PMID:31231599
Genome-wide characterization and expression analysis of PP2CA family members in response to ABA and osmotic stress in Gossypium. PMID:31231596
LTK is an ER-resident receptor tyrosine kinase that regulates secretion. PMID:31227593
Identification and prioritization of macrolideresistance genes with hypothetical annotation inStreptococcus pneumoniae. PMID:31223208
iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures. PMID:31218344
RNA interference core components identified and characterised in Verticillium nonalfalfae, a vascular wilt pathogenic plant fungi of hops. PMID:31209232
Diversity patterns of bacteriophages infecting Aggregatibacter and Haemophilus species across clades and niches. PMID:31201356
Distribution and Diversity of Cytochrome P450 Monooxygenases in the Fungal Class Tremellomycetes. PMID:31200551
Identification of L-Valine-initiated-germination-active genes in Bacillus subtilis using Tn-seq. PMID:31199835
In silico Prediction and Validations of Domains Involved in Gossypium hirsutum SnRK1 Protein Interaction With Cotton Leaf Curl Multan Betasatellite Encoded βC1. PMID:31191577
Annotation and Expression of IDN2-like and FDM-like Genes in Sexual and Aposporous Hypericum perforatum L. accessions. PMID:31181659
ANASTASIA: An Automated Metagenomic Analysis Pipeline for Novel Enzyme Discovery Exploiting Next Generation Sequencing Data. PMID:31178894
Cwp22, a novel peptidoglycan cross-linking enzyme, plays pleiotropic roles in Clostridioides difficile. PMID:31173438
Comprehensive Characterization of the Human Endogenous Retrovirus HERV-K(HML-6) Group: Overview of Structure, Phylogeny, and Contribution to the Human Genome. PMID:31167914
Characterization of a GDP-Fucose Transporter and a Fucosyltransferase Involved in the Fucosylation of Glycoproteins in the Diatom Phaeodactylum tricornutum. PMID:31164895
Evolutionary analyses of NIN-like proteins in plants and their roles in nitrate signaling. PMID:31161283
Identification of a Novel Hypovirulence-Inducing Hypovirus From Alternaria alternata. PMID:31156589
Curvature induction and membrane remodeling by FAM134B reticulon homology domain assist selective ER-phagy. PMID:31147549
The enigmatic role of fungal annexins: the case of Cryptococcus neoformans. PMID:31140968
Genome-wide mining of respiratory burst homologs and its expression in response to biotic and abiotic stresses in Triticum aestivum. PMID:31140145
Klebsiella pneumoniae O1 and O2ac antigens provide prototypes for an unusual strategy for polysaccharide antigen diversification. PMID:31138653
The structure of a GH149 β-(1 → 3) glucan phosphorylase reveals a new surface oligosaccharide binding site and additional domains that are absent in the disaccharide-specific GH94 glucose-β-(1 → 3)-glucose (laminaribiose) phosphorylase. PMID:31134667
Horizontal Gene Transfer as an Indispensable Driver for Evolution of Neocallimastigomycota into a Distinct Gut-Dwelling Fungal Lineage. PMID:31126947
Comparative Genomics of Thiohalobacter thiocyanaticus HRh1T and Guyparkeria sp. SCN-R1, Halophilic Chemolithoautotrophic Sulfur-Oxidizing Gammaproteobacteria Capable of Using Thiocyanate as Energy Source. PMID:31118923
New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes. PMID:31117933
UVSSA, UBP12, and RDO2/TFIIS Contribute to Arabidopsis UV Tolerance. PMID:31105721
Homology modeling and site-directed mutagenesis identify amino acid residues underlying the substrate selection mechanism of human monocarboxylate transporters 1 (hMCT1) and 4 (hMCT4). PMID:31101938
The thermophilic biomass-degrading bacterium Caldicellulosiruptor bescii utilizes two enzymes to oxidize glyceraldehyde 3-phosphate during glycolysis. PMID:31097544
Fungiculture in Termites Is Associated with a Mycolytic Gut Bacterial Community. PMID:31092601
Exploring the Potential Role of Moonlighting Function of the Surface-Associated Proteins From Mycobacterium bovis BCG Moreau and Pasteur by Comparative Proteomic. PMID:31080447
Birth-and-Death Evolution of the Fatty Acyl-CoA Reductase (FAR) Gene Family and Diversification of Cuticular Hydrocarbon Synthesis in Drosophila. PMID:31076758
Survival factor 1 contributes to the oxidative stress response and is required for full virulence of Sclerotinia sclerotiorum. PMID:31074170
Prediction and characterisation of lantibiotic structures with molecular modelling and molecular dynamics simulations. PMID:31073133
Prevalence of Antibiotic and Heavy Metal Resistance Determinants and Virulence-Related Genetic Elements in Plasmids of Staphylococcus aureus. PMID:31068910
Identification of Transcription Factors Regulating Senescence in Wheat through Gene Regulatory Network Modelling. PMID:31064813
PgMYB2, a MeJA-Responsive Transcription Factor, Positively Regulates the Dammarenediol Synthase Gene Expression in Panax Ginseng. PMID:31064108
Genomic Characterization of Arcobacter butzleri Isolated From Shellfish: Novel Insight Into Antibiotic Resistance and Virulence Determinants. PMID:31057492
Identification and Characterization of a Novel Robigovirus Species from Sweet Cherry in Turkey. PMID:31035571
Quantitative Proteomic Analysis of the Response of Probiotic Putative Lactococcus lactis NCDO 2118 Strain to Different Oxygen Availability Under Temperature Variation. PMID:31031733
Leaf Variegation and Impaired Chloroplast Development Caused by a Truncated CCT Domain Gene in albostrians Barley. PMID:31023840
Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization. PMID:31023229
Benefits and Drawbacks of Harboring Plasmid pP32BP2, Identified in Arctic Psychrophilic Bacterium Psychrobacter sp. DAB_AL32B. PMID:31022896
Tracing the origin and evolution of pseudokinases across the tree of life. PMID:31015289
The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch. PMID:31013951
Characterization and molecular cloning of novel isoforms of human spermatogenesis associated gene SPATA3. PMID:31006096
The discovery of three new hare lagoviruses reveals unexplored viral diversity in this genus. PMID:30997155
Structure revision of cryptosporioptides and determination of the genetic basis for dimeric xanthone biosynthesis in fungi. PMID:30996871
The Bax inhibitor UvBI-1, a negative regulator of mycelial growth and conidiation, mediates stress response and is critical for pathogenicity of the rice false smut fungus Ustilaginoidea virens. PMID:30993412
Deep Transcriptome Analysis Reveals Reactive Oxygen Species (ROS) Network Evolution, Response to Abiotic Stress, and Regulation of Fiber Development in Cotton. PMID:30991750
A fungal milRNA mediates epigenetic repression of a virulence gene in Verticillium dahliae. PMID:30967013
The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1. PMID:30959844
Comprehensive proteomic analysis of exoproteins expressed by ERIC I, II, III and IV Paenibacillus larvae genotypes reveals a wide range of virulence factors. PMID:30957692
Insertion sequences drive the emergence of a highly adapted human pathogen. PMID:30946644
Dual role of the colonization factor CD2831 in Clostridium difficile pathogenesis. PMID:30944377
An Acid Up-Regulated Surface Protein of Lactobacillus paracasei Strain GCRL 46 is Phylogenetically Related to the Secreted Glucan- (GpbB) and Immunoglobulin-Binding (SibA) Protein of Pathogenic Streptococci. PMID:30935131
Asymmetric birth and death of type I and type II MADS-box gene subfamilies in the rubber tree facilitating laticifer development. PMID:30934009
Latrophilins and Teneurins in Invertebrates: No Love for Each Other? PMID:30914910
A Na+ /Ca2+ exchanger of the olive pathogen Pseudomonas savastanoi pv. savastanoi is critical for its virulence. PMID:30912619
Diversity of transducer-like proteins (Tlps) in Campylobacter. PMID:30908544
Detection and characterization of an albumin-like protein in Leishmania donovani. PMID:30903348
A comprehensive in silico analysis of sortase superfamily. PMID:30900148
Nucleotide Second Messenger-Based Signaling in Extreme Acidophiles of the Acidithiobacillus Species Complex: Partition Between the Core and Variable Gene Complements. PMID:30899248
Genome-wide identification and analysis of the EIN3/EIL gene family in allotetraploid Brassica napus reveal its potential advantages during polyploidization. PMID:30898097
The VQ motif-containing proteins in the diploid and octoploid strawberry. PMID:30894615
Identification and characterization of aquaporin genes in Arachis duranensis and Arachis ipaensis genomes, the diploid progenitors of peanut. PMID:30885116
Cyclic nucleotides in archaea: Cyclic di-AMP in the archaeon Haloferax volcanii and its putative role. PMID:30884174
Cell Wall Hydrolases in Bacteria: Insight on the Diversity of Cell Wall Amidases, Glycosidases and Peptidases Toward Peptidoglycan. PMID:30873139
Clathrin Adaptor Complex-interacting Protein Irc6 Functions through the Conserved C-Terminal Domain. PMID:30872642
Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions. PMID:30871456
Emergence of a Thrombospondin Superfamily at the Origin of Metazoans. PMID:30863851
Genome Analysis of A Novel Recombinant Human Adenovirus Type 1 in China. PMID:30862832
Chromosomally-Encoded Yersinia pestis Type III Secretion Effector Proteins Promote Infection in Cells and in Mice. PMID:30854334
Similarities, variations, and evolution of cytochrome P450s in Streptomyces versus Mycobacterium. PMID:30850694
Nine new RNA viruses associated with the fire ant Solenopsis invicta from its native range. PMID:30847760
Crystal structure of the legume lectin-like domain of an ERGIC-53-like protein from Entamoeba histolytica. PMID:30839295
Sclerotinia sclerotiorum Thioredoxin Reductase Is Required for Oxidative Stress Tolerance, Virulence, and Sclerotial Development. PMID:30837967
Identification of a novel potassium channel (GiK) as a potential drug target in Giardia lamblia: Computational descriptions of binding sites. PMID:30834181
Further studies on sugar transporter (SWEET) genes in wheat (Triticum aestivum L.). PMID:30830588
Degradation of Fungal MicroRNAs Triggered by Short Tandem Target Mimics Is via the Small-RNA-Degrading Nuclease. PMID:30824452
Cysteinyl-tRNA Synthetase Mutations Cause a Multi-System, Recessive Disease That Includes Microcephaly, Developmental Delay, and Brittle Hair and Nails. PMID:30824121
The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global "deep red fluorescence". PMID:30820035
Comprehensive Comparative Analysis of Cholesterol Catabolic Genes/Proteins in Mycobacterial Species. PMID:30818787
Development of screening strategies for the identification of paramylon-degrading enzymes. PMID:30806871
Reannotation of the Ribonucleotide Reductase in a Cyanophage Reveals Life History Strategies Within the Virioplankton. PMID:30804913
Identification and Expression Profiling of Odorant Receptor Protein Genes in Sitophilus zeamais (Coleoptera: Curculionoidea) Using RT-qPCR. PMID:30783993
Borrelia burgdorferi bbk13 Is Critical for Spirochete Population Expansion in the Skin during Early Infection. PMID:30782856
A mechanism for temporary bioadhesion. PMID:30782790
Mesorhizobium huakuii HtpG Interaction with nsLTP AsE246 Is Required for Symbiotic Nitrogen Fixation. PMID:30765481
Stenotrophomonas maltophilia AHL-Degrading Strains Isolated from Marine Invertebrate Microbiota Attenuate the Virulence of Pectobacterium carotovorum and Vibrio coralliilyticus. PMID:30762152
A polyextremophilic alcohol dehydrogenase from the Atlantis II Deep Red Sea brine pool. PMID:30761247
RNA Binding Motif Protein 48 Is Required for U12 Splicing and Maize Endosperm Differentiation. PMID:30760564
Resistance to Two Vinylglycine Antibiotic Analogs Is Conferred by Inactivation of Two Separate Amino Acid Transporters in Erwinia amylovora. PMID:30745372
Genome reorganization of the GmSHMT gene family in soybean showed a lack of functional redundancy in resistance to soybean cyst nematode. PMID:30728404
Identification and characterization of NanH2 and NanH3, enzymes responsible for sialidase activity in the vaginal bacterium Gardnerella vaginalis. PMID:30723162
Genome-wide identification and expression analysis of brassinosteroid action-related genes during the shoot growth of moso bamboo. PMID:30721422
Isolation and biochemical characterization of a metagenome-derived 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase gene from subtropical marine mangrove wetland sediments. PMID:30715617
Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases. PMID:30705673
Genome-wide characterization and expression profiling of SWEET genes in cabbage (Brassica oleracea var. capitata L.) reveal their roles in chilling and clubroot disease responses. PMID:30696401
Suppressors of Meiotic Silencing by Unpaired DNA. PMID:30696000
T6SS contributes to gut microbiome invasion and killing of an herbivorous pest insect by plant-beneficial Pseudomonas protegens. PMID:30683920
Leaf rust (Puccinia triticina) mediated RNAi in wheat (Triticum aestivum L.) prompting host susceptibility. PMID:30671704
Growth Regulation in Amphibian Pathogenic Chytrid Fungi by the Quorum Sensing Metabolite Tryptophol. PMID:30671052
Various Evolutionary Trajectories Lead to Loss of the Tobramycin-Potentiating Activity of the Quorum-Sensing Inhibitor Baicalin Hydrate in Burkholderia cenocepacia Biofilms. PMID:30670425
A High-quality Draft Genome Assembly of Sinella curviseta: A Soil Model Organism (Collembola). PMID:30668671
Spatially clustering de novo variants in CYFIP2, encoding the cytoplasmic FMRP interacting protein 2, cause intellectual disability and seizures. PMID:30664714
Comparative analysis reveals the Genomic Islands in Pasteurella multocida population genetics: on Symbiosis and adaptability. PMID:30658579
Assigning confidence scores to homoeologs using fuzzy logic. PMID:30648004
Immune-inducible non-coding RNA molecule lincRNA-IBIN connects immunity and metabolism in Drosophila melanogaster. PMID:30633769
Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification. PMID:30622655
Insight Into the Diversity and Possible Role of Plasmids in the Adaptation of Psychrotolerant and Metalotolerant Arthrobacter spp. to Extreme Antarctic Environments. PMID:30619210
A pan-transcriptome analysis shows that disease resistance genes have undergone more selection pressure during barley domestication. PMID:30616511
Sequence analysis and confirmation of the type IV pili-associated proteins PilY1, PilW and PilV in Acidithiobacillus thiooxidans. PMID:30615628
Double-stranded RNA reduces growth rates of the gut parasite Crithidia mellificae. PMID:30607610
Gene Encoding a Novel Enzyme of LDH2/MDH2 Family is Lost in Plant and Animal Genomes During Transition to Land. PMID:30607448
Comparative metabolic profiling of Vitis amurensis and Vitis vinifera during cold acclimation. PMID:30603094
salto/CG13164 is required for sperm head morphogenesis in Drosophila. PMID:30601696
Two more Posterior Hox genes and Hox cluster dispersal in echinoderms. PMID:30587111
Genome-Wide Identification and Comparative Analysis for OPT Family Genes in Panax ginseng and Eleven Flowering Plants. PMID:30577553
Characterization and Expression Profiling of Neuropeptides and G-Protein-Coupled Receptors (GPCRs) for Neuropeptides in the Asian Citrus Psyllid, Diaphorina citri (Hemiptera: Psyllidae). PMID:30563248
Chloroplasts at the Crossroad of Photosynthesis, Pathogen Infection and Plant Defense. PMID:30563149
Expression Characteristics and Functional Analysis of the ScWRKY3 Gene from Sugarcane. PMID:30558233
Predicted glycosyltransferases promote development and prevent spurious cell clumping in the choanoflagellate S. rosetta. PMID:30556809
NF-YB1-YC12-bHLH144 complex directly activates Wx to regulate grain quality in rice (Oryza sativa L.). PMID:30552799
The novel EHEC gene asa overlaps the TEGT transporter gene in antisense and is regulated by NaCl and growth phase. PMID:30552341
Daphnia galeata responds to the exposure to an ichthyosporean gut parasite by down-regulation of immunity and lipid metabolism. PMID:30547741
Comparative genome analysis of marine purple sulfur bacterium Marichromatium gracile YL28 reveals the diverse nitrogen cycle mechanisms and habitat-specific traits. PMID:30546119
Draft genome Sequence of Phosphate-Accumulating Bacterium Acinetobacter tandoii SC36 from a Mangrove Wetland Ecosystem Provides Insights into Elements of Phosphorus Removal. PMID:30542915
Divergence between bread wheat and Triticum militinae in the powdery mildew resistance QPm.tut-4A locus and its implications for cloning of the resistance gene. PMID:30535646
Systematic domain-based aggregation of protein structures highlights DNA-, RNA- and other ligand-binding positions. PMID:30535108
Bi-allelic TMEM94 Truncating Variants Are Associated with Neurodevelopmental Delay, Congenital Heart Defects, and Distinct Facial Dysmorphism. PMID:30526868
Out in the Cold: Identification of Genomic Regions Associated With Cold Tolerance in the Biocontrol Fungus Clonostachys rosea Through Genome-Wide Association Mapping. PMID:30524411
Host Adaptive Immune Status Regulates Expression of the Schistosome AMP-Activated Protein Kinase. PMID:30519243
Full-length title: NRPPUR database search and in vitro analysis identify an NRPS-PKS biosynthetic gene cluster with a potential antibiotic effect. PMID:30509188
Integrated physiologic, genomic and transcriptomic strategies involving the adaptation of allotetraploid rapeseed to nitrogen limitation. PMID:30509163
Endophytic Paenibacillus amylolyticus KMCLE06 Extracted Dipicolinic Acid as Antibacterial Agent Derived via Dipicolinic Acid Synthetase Gene. PMID:30498942
CHESS: a new human gene catalog curated from thousands of large-scale RNA sequencing experiments reveals extensive transcriptional noise. PMID:30486838
Discovery and annotation of a novel transposable element family in Gossypium. PMID:30486783
Comparative genomics of downy mildews reveals potential adaptations to biotrophy. PMID:30486780
Functional Roles of Starch Binding Domains and Surface Binding Sites in Enzymes Involved in Starch Biosynthesis. PMID:30483298
Segmental and Tandem Duplications Driving the Recent NBS-LRR Gene Expansion in the Asparagus Genome. PMID:30477134
Peculiar features of the plastids of the colourless alga Euglena longa and photosynthetic euglenophytes unveiled by transcriptome analyses. PMID:30451959
Expression of seven carbonic anhydrases in red alga Gracilariopsis chorda and their subcellular localization in a heterologous system, Arabidopsis thaliana. PMID:30446790
Comparative evolutionary histories of fungal proteases reveal gene gains in the mycoparasitic and nematode-parasitic fungus Clonostachys rosea. PMID:30445903
Genomes of trombidid mites reveal novel predicted allergens and laterally transferred genes associated with secondary metabolism. PMID:30445460
Re-programming of Pseudomonas syringae pv. actinidiae gene expression during early stages of infection of kiwifruit. PMID:30442113
Cellular Zinc Finger Protein 622 Hinders Human Adenovirus Lytic Growth and Limits Binding of the Viral pVII Protein to Virus DNA. PMID:30429337
Deletion of a conserved transcript PG_RS02100 expressed during logarithmic growth in Porphyromonas gingivalis results in hyperpigmentation and increased tolerance to oxidative stress. PMID:30419070
Unlocking conserved and diverged metabolic characteristics in cassava carbon assimilation via comparative genomics approach. PMID:30413726
Pleiotropic Roles of ChSat4 in Asexual Development, Cell Wall Integrity Maintenance, and Pathogenicity in Colletotrichum higginsianum. PMID:30405539
In silico Prediction, Characterization, Molecular Docking, and Dynamic Studies on Fungal SDRs as Novel Targets for Searching Potential Fungicides Against Fusarium Wilt in Tomato. PMID:30405403
InterPro in 2019: improving coverage, classification and access to protein sequence annotations. PMID:30398656
Conjugative Transposons and Their Cargo Genes Vary across Natural Populations of Rickettsia buchneri Infecting the Tick Ixodes scapularis. PMID:30398619
Immunotopological Analysis of the Treponema denticola Major Surface Protein (Msp). PMID:30373754
PubChem 2019 update: improved access to chemical data. PMID:30371825
Mitochondrial and Plastid Genomes from Coralline Red Algae Provide Insights into the Incongruent Evolutionary Histories of Organelles. PMID:30364957
The extracellular loop of Man-PTS subunit IID is responsible for the sensitivity of Lactococcus garvieae to garvicins A, B and C. PMID:30361679
Genome-wide identification and analysis of the CNGC gene family in maize. PMID:30356996
From De Novo to "De Nono": The Majority of Novel Protein-Coding Genes Identified with Phylostratigraphy Are Old Genes or Recent Duplicates. PMID:30346517
Comparative Genomics of Lactobacillus brevis Reveals a Significant Plasmidome Overlap of Brewery and Insect Isolates. PMID:30341451
BAH domains and a histone-like motif in DNA methyltransferase 1 (DNMT1) regulate de novo and maintenance methylation in vivo. PMID:30341171
Identification of an apiosyltransferase in the plant pathogen Xanthomonas pisi. PMID:30335828
An RND transporter in the monoterpene metabolism of Castellaniella defragrans. PMID:30334144
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID:30324905
Yeast two-hybrid screening reveals a dual function for the histone acetyltransferase GcnE by controlling glutamine synthesis and development in Aspergillus fumigatus. PMID:30324432
Quorum Sensing Modulates the Epibiotic-Parasitic Relationship Between Actinomyces odontolyticus and Its Saccharibacteria epibiont, a Nanosynbacter lyticus Strain, TM7x. PMID:30319555
Overexpression of a Novel ROP Gene from the Banana (MaROP5g) Confers Increased Salt Stress Tolerance. PMID:30314273
Exploring the Remote Ties between Helitron Transposases and Other Rolling-Circle Replication Proteins. PMID:30304800
A tetratricopeptide repeat domain protein has profound effects on assembly of periplasmic flagella, morphology and motility of the lyme disease spirochete Borrelia burgdorferi. PMID:30303576
Biodegradation of sulfamethoxazole by a bacterial consortium of Achromobacter denitrificans PR1 and Leucobacter sp. GP. PMID:30294753
Genome analyses of uncultured TG2/ZB3 bacteria in 'Margulisbacteria' specifically attached to ectosymbiotic spirochetes of protists in the termite gut. PMID:30287885
The Virulence Effect of CpxRA in Citrobacter rodentium Is Independent of the Auxiliary Proteins NlpE and CpxP. PMID:30280092
Early Responses to Severe Drought Stress in the Arabidopsis thaliana Cell Suspension Culture Proteome. PMID:30279377
Conformational changes on substrate binding revealed by structures of Methylobacterium extorquens malate dehydrogenase. PMID:30279311
Bona fide choline monoxygenases evolved in Amaranthaceae plants from oxygenases of unknown function: Evidence from phylogenetics, homology modeling and docking studies. PMID:30256846
NagRBt Is a Pleiotropic and Dual Transcriptional Regulator in Bacillus thuringiensis. PMID:30254611
Diversity and Evolution of Sensor Histidine Kinases in Eukaryotes. PMID:30252070
Comparative Genomic Analysis and Characterization of Two Salmonella enterica Serovar Enteritidis Isolates From Poultry With Notably Different Survival Abilities in Egg Whites. PMID:30245675
The ZmbZIP22 Transcription Factor Regulates 27-kD γ-Zein Gene Transcription during Maize Endosperm Development. PMID:30242039
Ancient Endogenous Pararetroviruses in Oryza Genomes Provide Insights into the Heterogeneity of Viral Gene Macroevolution. PMID:30239708
Joint Genomic and Proteomic Analysis Identifies Meta-Trait Characteristics of Virulent and Non-virulent Staphylococcus aureus Strains. PMID:30237986
Talaropeptides A-D: Structure and Biosynthesis of Extensively N-methylated Linear Peptides From an Australian Marine Tunicate-Derived Talaromyces sp. PMID:30234104
Complete genome sequence of a novel sea otterpox virus. PMID:30225673
The Thaumarchaeon N. gargensis carries functional bioABD genes and has a promiscuous E. coli ΔbioH-complementing esterase EstN1. PMID:30218044
Escherichia coli recombinant sperm immobilizing factor RecX as a potential vaginal contraceptive. PMID:30213271
Prevalence and spectrum of AKT1, PIK3CA, PTEN and TP53 somatic mutations in Chinese breast cancer patients. PMID:30212483
Cork Oak Young and Traumatic Periderms Show PCD Typical Chromatin Patterns but Different Chromatin-Modifying Genes Expression. PMID:30210513
Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing. PMID:30208848
A genome wide survey reveals multiple nematocyst-specific genes in Myxozoa. PMID:30208843
Metagenomic Analysis of Fish-Associated Ca. Parilichlamydiaceae Reveals Striking Metabolic Similarities to the Terrestrial Chlamydiaceae. PMID:30202970
A novel, homozygous nonsense variant of the CDHR1 gene in a Chinese family causes autosomal recessive retinal dystrophy by NGS-based genetic diagnosis. PMID:30160356
The Virology of Taterapox Virus In Vitro. PMID:30158437
Genome-wide Identification of PP2C Genes and Their Expression Profiling in Response to Drought and Cold Stresses in Medicago truncatula. PMID:30150630
A Post-segregational Killing Mechanism for Maintaining Plasmid PMF1 in Its Myxococcus fulvus Host. PMID:30131946
Molecular characterization of a novel Aureusvirus infecting elderberry (Sambucus nigra L.). PMID:30114234
Characterization of biochemical properties of an apurinic/apyrimidinic endonuclease from Helicobacter pylori. PMID:30110394
Insights from the Molecular modeling, docking analysis of illicit drugs and Bomb Compounds with Honey Bee Odorant Binding Proteins (OBPs). PMID:30108419
Characterization of the glycerol-3-phosphate acyltransferase gene and its real-time expression under cold stress in Paeonia lactiflora Pall. PMID:30096187
The transcriptome of the Bermuda fireworm Odontosyllis enopla (Annelida: Syllidae): A unique luciferase gene family and putative epitoky-related genes. PMID:30089107
A glutamine riboswitch is a key element for the regulation of glutamine synthetase in cyanobacteria. PMID:30085248
UBTOR/KIAA1024 regulates neurite outgrowth and neoplasia through mTOR signaling. PMID:30080879
Mobile Genetic Elements Associated with Antimicrobial Resistance. PMID:30068738
Genome-wide identification and characterization of the 14-3-3 family in Vitis vinifera L. during berry development and cold- and heat-stress response. PMID:30068289
Deciphering the targets of retroviral protease inhibitors in Plasmodium berghei. PMID:30067811
BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery. PMID:30053270
dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation. PMID:30053267
Genome-wide analysis of ATP binding cassette (ABC) transporters in tomato. PMID:30048467
Intraspecific variations in Cyt b and D-loop sequences of Testudine species, Lissemys punctata from south Karnataka. PMID:30046490
Characterization of NDM-Encoding Plasmids From Enterobacteriaceae Recovered From Czech Hospitals. PMID:30042758
MouR controls the expression of the Listeria monocytogenes Agr system and mediates virulence. PMID:30011022
Phenotypic characterization of Gardnerella vaginalis subgroups suggests differences in their virulence potential. PMID:30001418
De novo assembly of a transcriptome for the cricket Gryllus bimaculatus prothoracic ganglion: An invertebrate model for investigating adult central nervous system compensatory plasticity. PMID:29995882
Battle of the sexes: contrasting roles of testis-specific protein Y-encoded (TSPY) and TSPX in human oncogenesis. PMID:29974883
Plasmids of Psychrotolerant Polaromonas spp. Isolated From Arctic and Antarctic Glaciers - Diversity and Role in Adaptation to Polar Environments. PMID:29967598
Whole genome sequencing reveals widespread distribution of typhoidal toxin genes and VirB/D4 plasmids in bovine-associated nontyphoidal Salmonella. PMID:29959369
Transcriptome-Wide Identification of an Aurone Glycosyltransferase with Glycosidase Activity from Ornithogalum saundersiae. PMID:29958449
Rapid Detection of Candida auris Based on Loop-Mediated Isothermal Amplification (LAMP). PMID:29950329
An antifungal polyketide associated with horizontally acquired genes supports symbiont-mediated defense in Lagria villosa beetles. PMID:29946103
The mycoparasitic fungus Clonostachys rosea responds with both common and specific gene expression during interspecific interactions with fungal prey. PMID:29928301
Genome-wide identification and classification of MYB superfamily genes in peach. PMID:29927971
A distinct abundant group of microbial rhodopsins discovered using functional metagenomics. PMID:29925949
Identification and Characterization of Type IV Pili as the Cellular Receptor of Broad Host Range Stenotrophomonas maltophilia Bacteriophages DLP1 and DLP2. PMID:29925793
A component of the TOR (Target Of Rapamycin) nutrient-sensing pathway plays a role in circadian rhythmicity in Neurospora crassa. PMID:29924817
A second RNA-binding protein is essential for ethanol tolerance provided by the bacterial OLE ribonucleoprotein complex. PMID:29915070
Broadly conserved Na+-binding site in the N-lobe of prokaryotic multidrug MATE transporters. PMID:29915058
Adaptation of Pseudomonas aeruginosa to Phage PaP1 Predation via O-Antigen Polymerase Mutation. PMID:29910791
Introduction of novel thermostable α-amylases from genus Anoxybacillus and proposing to group the Bacillaceae related α-amylases under five individual GH13 subfamilies. PMID:29904894
Anti-phage islands force their target phage to directly mediate island excision and spread. PMID:29904071
The GntR family transcriptional regulator PMM1637 regulates the highly conserved cyanobacterial sRNA Yfr2 in marine picocyanobacteria. PMID:29901694
Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes. PMID:29898658
A novel homozygous variant of GPR98 causes usher syndrome type IIC in a consanguineous Chinese family by next generation sequencing. PMID:29890953
Blooming of Unusual Cytochrome P450s by Tandem Duplication in the Pathogenic Fungus Conidiobolus coronatus. PMID:29890717
Horizontal Gene Transfer From Bacteria and Plants to the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis. PMID:29887874
Isolation, identification and in silico analysis of alpha-amylase gene of Aspergillus niger strain CSA35 obtained from cassava undergoing spoilage. PMID:29872732
Ectopic expression of GhCOBL9A, a cotton glycosyl-phosphatidyl inositol-anchored protein encoding gene, promotes cell elongation, thickening and increased plant biomass in transgenic Arabidopsis. PMID:29869696
The Kynurenine 3-Monooxygenase Encoding Gene, BcKMO, Is Involved in the Growth, Development, and Pathogenicity of Botrytis cinerea. PMID:29867912
Genome-Wide Analysis of β-Galactosidases in Xanthomonas campestris pv. campestris 8004. PMID:29867862
Salmonella enterica serovar Typhimurium has three transketolase enzymes contributing to the pentose phosphate pathway. PMID:29848552
Genomic analysis of bifunctional Class C-Class D β-lactamases in environmental bacteria. PMID:29846396
S100A11 protects against neuronal cell apoptosis induced by cerebral ischemia via inhibiting the nuclear translocation of annexin A1. PMID:29844306
Evidence for interaction between Hsp90 and the ER membrane complex. PMID:29808299
The intracellular nucleotide-binding leucine-rich repeat receptor (SlNRC4a) enhances immune signalling elicited by extracellular perception. PMID:29790585
High Diversity of Myocyanophage in Various Aquatic Environments Revealed by High-Throughput Sequencing of Major Capsid Protein Gene With a New Set of Primers. PMID:29774020
Novel pathway of 3-hydroxyanthranilic acid formation in limazepine biosynthesis reveals evolutionary relation between phenazines and pyrrolobenzodiazepines. PMID:29773836
Comparative proteomic analysis reveals the regulatory network of the veA gene during asexual and sexual spore development of Aspergillus cristatus. PMID:29773679
The orphan germinant receptor protein GerXAO (but not GerX3b) is essential for L-alanine induced germination in Clostridium botulinum Group II. PMID:29728678
Methane-yielding microbial communities processing lactate-rich substrates: a piece of the anaerobic digestion puzzle. PMID:29721040
De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts. PMID:29707046
Genome-wide identification of the auxin response factor gene family in Cicer arietinum. PMID:29703137
Comparative systems analysis of the secretome of the opportunistic pathogen Aspergillus fumigatus and other Aspergillus species. PMID:29700415
Comparative analyses and structural insights of the novel cytochrome P450 fusion protein family CYP5619 in Oomycetes. PMID:29700357
Integrative Transcriptomic Analysis Uncovers Novel Gene Modules That Underlie the Sulfate Response in Arabidopsis thaliana. PMID:29692794
Loss of function mutations in VARS encoding cytoplasmic valyl-tRNA synthetase cause microcephaly, seizures, and progressive cerebral atrophy. PMID:29691655
An epistatic effect of KRT25 on SP6 is involved in curly coat in horses. PMID:29686323
A Legionella pneumophila amylase is essential for intracellular replication in human macrophages and amoebae. PMID:29679057
Complete Genome Sequence of Agrobacterium tumefaciens 1D1609. PMID:29674541
Genome analysis of the freshwater planktonic Vulcanococcus limneticus sp. nov. reveals horizontal transfer of nitrogenase operon and alternative pathways of nitrogen utilization. PMID:29661139
Purification of an alpha amylase from Aspergillus flavus NSH9 and molecular characterization of its nucleotide gene sequence. PMID:29607285
Molecular basis for the structural diversity in serogroup O2-antigen polysaccharides in Klebsiella pneumoniae. PMID:29602878
Genome-Wide Identification of the Alba Gene Family in Plants and Stress-Responsive Expression of the Rice Alba Genes. PMID:29597290
Genetic Variants in STAT3 Promoter Regions and Their Application in Molecular Breeding for Body Size Traits in Qinchuan Cattle. PMID:29596388
Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase. PMID:29588502
HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised classification of superfamily protein sequences with a reliable cut-off threshold. PMID:29579071
The low-molecular-mass, penicillin-binding proteins DacB and DacC combine to modify peptidoglycan cross-linking and allow stable Type IV pilus expression in Neisseria gonorrhoeae. PMID:29573486
Near-Complete Genome Sequence of a Novel Single-Stranded RNA Virus Discovered in Indoor Air. PMID:29567746
Out of Water: The Origin and Early Diversification of Plant R-Genes. PMID:29563207
RNA interference-based silencing of the alpha-amylase (amy1) gene in Aspergillus flavus decreases fungal growth and aflatoxin production in maize kernels. PMID:29541880
BIFURCATE FLOWER TRUSS: a novel locus controlling inflorescence branching in tomato contains a defective MAP kinase gene. PMID:29509915
In vivo virulence of Mycobacterium tuberculosis depends on a single homologue of the LytR-CpsA-Psr proteins. PMID:29500450
Crystal structure of the MSMEG_4306 gene product from Mycobacterium smegmatis. PMID:29497021
Photosynthesis Is Widely Distributed among Proteobacteria as Demonstrated by the Phylogeny of PufLM Reaction Center Proteins. PMID:29472894
Two genes encoding GH10 xylanases are essential for the virulence of the oomycete plant pathogen Phytophthora parasitica. PMID:29470644
Identification of a locus conferring dominant resistance to maize rough dwarf disease in maize. PMID:29459698
Influence of Different Sugars and Initial pH on β-Glucan Formation by Lactobacillus brevis TMW 1.2112. PMID:29442149
Comparison of complex networks and tree-based methods of phylogenetic analysis and proposal of a bootstrap method. PMID:29441237
Display of Recombinant Proteins on Bacterial Outer Membrane Vesicles by Using Protein Ligation. PMID:29439988
Genome-Wide Identification, Characterization, and Expression Profiling of Glutathione S-Transferase (GST) Family in Pumpkin Reveals Likely Role in Cold-Stress Tolerance. PMID:29439434
Identification of the Autochaperone Domain in the Type Va Secretion System (T5aSS): Prevalent Feature of Autotransporters with a β-Helical Passenger. PMID:29375499
Fungal Screening on Olive Oil for Extracellular Triacylglycerol Lipases: Selection of a Trichoderma harzianum Strain and Genome Wide Search for the Genes. PMID:29370083
Mapping HLA-A2, -A3 and -B7 supertype-restricted T-cell epitopes in the ebolavirus proteome. PMID:29363421
A novel family of tyrosine integrases encoded by the temperate pleolipovirus SNJ2. PMID:29361162
Evolutionary analyses of myosin genes in trypanosomatids show a history of expansion, secondary losses and neofunctionalization. PMID:29358582
Novel Two-Component System of Streptococcus sanguinis Affecting Functions Associated with Viability in Saliva and Biofilm Formation. PMID:29339459
The genome sequence of Escherichia coli tailed phage D6 and the diversity of Enterobacteriales circular plasmid prophages. PMID:29304472
Phyletic Distribution and Lineage-Specific Domain Architectures of Archaeal Two-Component Signal Transduction Systems. PMID:29263101
SlbZIP38, a Tomato bZIP Family Gene Downregulated by Abscisic Acid, Is a Negative Regulator of Drought and Salt Stress Tolerance. PMID:29261143
Integrated transcriptomic analysis of Trichosporon Asahii uncovers the core genes and pathways of fluconazole resistance. PMID:29259317
Anilinopyrimidine Resistance in Botrytis cinerea Is Linked to Mitochondrial Function. PMID:29250050
Isolation and characterization of HepP: a virulence-related Pseudomonas aeruginosa heparinase. PMID:29246112
Long disordered regions of the C-terminal domain of Abelson tyrosine kinase have specific and additive functions in regulation and axon localization. PMID:29232713
Insights from the protein-protein interaction network analysis of Mycobacterium tuberculosis toxin-antitoxin systems. PMID:29225431
PURA, the gene encoding Pur-alpha, member of an ancient nucleic acid-binding protein family with mammalian neurological functions. PMID:29221753
Autographa californica Multiple Nucleopolyhedrovirus ac75 Is Required for the Nuclear Egress of Nucleocapsids and Intranuclear Microvesicle Formation. PMID:29212928
Proposed Role for KaiC-Like ATPases as Major Signal Transduction Hubs in Archaea. PMID:29208747
COGcollator: a web server for analysis of distant relationships between homologous protein families. PMID:29187234
Reconstruction of Diverse Verrucomicrobial Genomes from Metagenome Datasets of Freshwater Reservoirs. PMID:29163419
Genomic Comparison of Two Family-Level Groups of the Uncultivated NAG1 Archaeal Lineage from Chemically and Geographically Disparate Hot Springs. PMID:29163388
Cloning and Molecular Characterization of an Alpha-Glucosidase (MalH) from the Halophilic Archaeon Haloquadratum walsbyi. PMID:29160840
Multidrug resistance-associated protein 4 is a bile transporter of Clonorchis sinensis simulated by in silico docking. PMID:29157307
Pan-Cellulosomics of Mesophilic Clostridia: Variations on a Theme. PMID:29156585
A streamlined cloning workflow minimising the time-to-strain pipeline for Pichia pastoris. PMID:29150665
Identification of a novel HERV-K(HML10): comprehensive characterization and comparative analysis in non-human primates provide insights about HML10 proviruses structure and diffusion. PMID:29118853
RefSeq: an update on prokaryotic genome annotation and curation. PMID:29112715
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication. PMID:29106469
Interdependence of Primary Metabolism and Xenobiotic Mitigation Characterizes the Proteome of Bjerkandera adusta during Wood Decomposition. PMID:29101201
A conserved tryptophan within the WRDPLVDID domain of yeast Pah1 phosphatidate phosphatase is required for its in vivo function in lipid metabolism. PMID:29066621
Sequence analysis of malacoherpesvirus proteins: Pan-herpesvirus capsid module and replication enzymes with an ancient connection to "Megavirales". PMID:29065352
Control of biotin biosynthesis in mycobacteria by a pyruvate carboxylase dependent metabolic signal. PMID:29052269
Genomic Analysis of Bacillus sp. Strain B25, a Biocontrol Agent of Maize Pathogen Fusarium verticillioides. PMID:29051980
De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii. PMID:29037147
EUF1 - a newly identified gene involved in erythritol utilization in Yarrowia lipolytica. PMID:28970528
Microbial genome analysis: the COG approach. PMID:28968633
Type VI secretion system MIX-effectors carry both antibacterial and anti-eukaryotic activities. PMID:28912123
Biodegradation of gentamicin by bacterial consortia AMQD4 in synthetic medium and raw gentamicin sewage. PMID:28887556
Broad-Host-Range Expression Reveals Native and Host Regulatory Elements That Influence Heterologous Antibiotic Production in Gram-Negative Bacteria. PMID:28874475
Extracellular SalB Contributes to Intrinsic Cephalosporin Resistance and Cell Envelope Integrity in Enterococcus faecalis. PMID:28874409
Mycobacterium abscessus l,d-Transpeptidases Are Susceptible to Inactivation by Carbapenems and Cephalosporins but Not Penicillins. PMID:28760902
An Update on Jacalin-Like Lectins and Their Role in Plant Defense. PMID:28737678
Formation of an Angular Aromatic Polyketide from a Linear Anthrene Precursor via Oxidative Rearrangement. PMID:28712746
Dynamic regulation of lysine acetylation: the balance between acetyltransferase and deacetylase activities. PMID:28701313
The ECF sigma factor, PSPTO_1043, in Pseudomonas syringae pv. tomato DC3000 is induced by oxidative stress and regulates genes involved in oxidative stress response. PMID:28700608
Bacteriocins of Non-aureus Staphylococci Isolated from Bovine Milk. PMID:28667105
Cytomegalovirus Late Protein pUL31 Alters Pre-rRNA Expression and Nuclear Organization during Infection. PMID:28659485
Stand-Alone EAL Domain Proteins Form a Distinct Subclass of EAL Proteins Involved in Regulation of Cell Motility and Biofilm Formation in Enterobacteria. PMID:28652301
Uterine responses to early pre-attachment embryos in the domestic dog and comparisons with other domestic animal species. PMID:28651344
A Key Enzyme of the NAD+ Salvage Pathway in Thermus thermophilus: Characterization of Nicotinamidase and the Impact of Its Gene Deletion at High Temperatures. PMID:28630126
The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa. PMID:28616073
A genome-scale metabolic reconstruction of Lysinibacillus sphaericus unveils unexploited biotechnological potentials. PMID:28604819
Myxococcus xanthus DK1622 Coordinates Expressions of the Duplicate groEL and Single groES Genes for Synergistic Functions of GroELs and GroES. PMID:28496436
In vivo structures of an intact type VI secretion system revealed by electron cryotomography. PMID:28487352
Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar Typhimurium. PMID:28426789
Transcriptome-based investigation of cirrus development and identifying microsatellite markers in rattan (Daemonorops jenkinsiana). PMID:28383053
Genomic and transcriptomic landscape of Escherichia coli BL21(DE3). PMID:28379538
CDD: specific functional annotation with the Conserved Domain Database PubMed citations: 520.

520 articles citing: CDD: specific functional annotation with the Conserved Domain Database

Secretome Profiling by Proteogenomic Analysis Shows Species-Specific, Temperature-Dependent, and Putative Virulence Proteins of Pythium insidiosum. PMID:35628782
Capsule-Targeting Depolymerases Derived from Acinetobacter baumannii Prophage Regions. PMID:35563361
In silico prediction and interaction of resveratrol on methyl-CpG binding proteins by molecular docking and MD simulations study. PMID:35425086
Large-scale analyses of heat shock transcription factors and database construction based on whole-genome genes in horticultural and representative plants. PMID:35184193
An Integrative Sialomic Analysis Reveals Molecules From Triatoma sordida (Hemiptera: Reduviidae). PMID:35047420
Macrophage Selenoproteins Restrict Intracellular Replication of Francisella tularensis and Are Essential for Host Immunity. PMID:34777335
Combined Protein and Alkaloid Research of Chelidonium majus Latex Reveals CmMLP1 Accompanied by Alkaloids with Cytotoxic Potential to Human Cervical Carcinoma Cells. PMID:34769268
Comparative Genome Analysis and Spore Heat Resistance Assay Reveal a New Component to Population Structure and Genome Epidemiology Within Clostridium perfringens Enterotoxin-Carrying Isolates. PMID:34566921
A Unique Gene Module in Thermococcales Archaea Centered on a Hypervariable Protein Containing Immunoglobulin Domains. PMID:34489912
Butyryl/Caproyl-CoA:Acetate CoA-transferase: cloning, expression and characterization of the key enzyme involved in medium-chain fatty acid biosynthesis. PMID:34338280
Evolution of Toll, Spatzle and MyD88 in insects: the problem of the Diptera bias. PMID:34289811
Complete Nucleotide Sequence, Genome Organization, and Comparative Genomic Analyses of Citrus Yellow-Vein Associated Virus (CYVaV). PMID:34168635
Novel Acinetobacter baumannii Myovirus TaPaz Encoding Two Tailspike Depolymerases: Characterization and Host-Recognition Strategy. PMID:34070371
Comprehensive analysis of SSRs and database construction using all complete gene-coding sequences in major horticultural and representative plants. PMID:34059664
A Roadmap for Genome-Based Phage Taxonomy. PMID:33803862
Genome-Wide Analysis of Ribosomal Protein GhRPS6 and Its Role in Cotton Verticillium Wilt Resistance. PMID:33670294
Study on cocoonase, sericin, and degumming of silk cocoon: computational and experimental. PMID:33594479
Genome-Wide Identification and Comparative Analysis of ARF Family Genes in Three Apiaceae Species. PMID:33519895
Comparative Genome Analysis and Phenotypic Characterization of Clostridium gasigenes CGAS001 Isolated From Chilled Vacuum-Packed Lamb Meat. PMID:32983035
Lysin LysMK34 of Acinetobacter baumannii Bacteriophage PMK34 Has a Turgor Pressure-Dependent Intrinsic Antibacterial Activity and Reverts Colistin Resistance. PMID:32709718
CYPminer: an automated cytochrome P450 identification, classification, and data analysis tool for genome data sets across kingdoms. PMID:32349673
Identification, evolution and expression analyses of whole genome-wide TLP gene family in Brassica napus. PMID:32228446
The Novel Serine/Threonine Protein Kinase LmjF.22.0810 from Leishmania major may be Involved in the Resistance to Drugs such as Paromomycin. PMID:31718000
Genome-wide DNA methylation analysis of Metarhizium anisopliae during tick mimicked infection condition. PMID:31711419
Biochemical characterization of the Helicobacter pylori bactofilin-homolog HP1542. PMID:31233532
The Class III Peroxidase (POD) Gene Family in Cassava: Identification, Phylogeny, Duplication, and Expression. PMID:31163686
Physical Mapping of Peroxidase Genes and Development of Functional Markers for TaPod-D1 on Bread Wheat Chromosome 7D. PMID:31068962
Antimicrobial Peptides, Polymorphic Toxins, and Self-Nonself Recognition Systems in Archaea: an Untapped Armory for Intermicrobial Conflicts. PMID:31064832
Predicted highly derived class 1 CRISPR-Cas system in Haloarchaea containing diverged Cas5 and Cas7 homologs but no CRISPR array. PMID:30993331
Crystal structure of the legume lectin-like domain of an ERGIC-53-like protein from Entamoeba histolytica. PMID:30839295
A New Class of Phosphoribosyltransferases Involved in Cobamide Biosynthesis Is Found in Methanogenic Archaea and Cyanobacteria. PMID:30640434
Investigations into PoyH, a promiscuous protease from polytheonamide biosynthesis. PMID:30627933
Metabolism and Occurrence of Methanogenic and Sulfate-Reducing Syntrophic Acetate Oxidizing Communities in Haloalkaline Environments. PMID:30619130
Genome-Wide Identification and Comparative Analysis for OPT Family Genes in Panax ginseng and Eleven Flowering Plants. PMID:30577553
Molecular evolution and transcriptional profile of GH3 and GH20 β-N-acetylglucosaminidases in the entomopathogenic fungus Metarhizium anisopliae. PMID:30534852
Dissecting the functional domains of the Arabidopsis thaliana nonhost resistance 2B (AtNHR2B) protein. PMID:30325257
Genomic Analysis of 48 Paenibacillus larvae Bacteriophages. PMID:30029517
Oak genome reveals facets of long lifespan. PMID:29915331
Ceratocystis cacaofunesta genome analysis reveals a large expansion of extracellular phosphatidylinositol-specific phospholipase-C genes (PI-PLC). PMID:29343217
The genome sequence of the commercially cultivated mushroom Agrocybe aegerita reveals a conserved repertoire of fruiting-related genes and a versatile suite of biopolymer-degrading enzymes. PMID:29334897
Allelic diversity of phytoene synthase gene influences the transcription level in citrus fruit among a citrus F1 hybrid population. PMID:29085248
Assessment of vocation of rifabutin and rifapentine in replace of rifampcin in drug resistance leprosy patients: a molecular simulation study. PMID:29071280
Chlorophyte aspartyl aminopeptidases: Ancient origins, expanded families, new locations, and secondary functions. PMID:29023459
Characterization and molecular modeling of polygalacturonase isoforms from Saccharomyces cerevisiae. PMID:28828292
Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation. PMID:28770445
Novel Fri1-like Viruses Infecting Acinetobacter baumannii-vB_AbaP_AS11 and vB_AbaP_AS12-Characterization, Comparative Genomic Analysis, and Host-Recognition Strategy. PMID:28714913
Allele specific CAPS marker development and characterization of chalcone synthase gene in Indian mulberry (Morus spp., family Moraceae). PMID:28640826
The Dark Side of the Mushroom Spring Microbial Mat: Life in the Shadow of Chlorophototrophs. II. Metabolic Functions of Abundant Community Members Predicted from Metagenomic Analyses. PMID:28634470
Immunolocation and enzyme activity analysis of Cryptosporidium parvum enolase. PMID:28569179
Identification and expression analysis of starch branching enzymes involved in starch synthesis during the development of chestnut (Castanea mollissima Blume) cotyledons. PMID:28542293
Evolutionary origin and function of NOX4-art, an arthropod specific NADPH oxidase. PMID:28356077
Genomic Evidence for Bacterial Determinants Influencing Obesity Development. PMID:28346358
Antibiotic Resistance Determinant-Focused Acinetobacter baumannii Vaccine Designed Using Reverse Vaccinology. PMID:28230771
Multiplicity of Quorum Quenching Enzymes: A Potential Mechanism to Limit Quorum Sensing Bacterial Population. PMID:28148985
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge. PMID:28031775
Insight into the Exoproteome of the Tissue-Derived Trypomastigote form of Trypanosoma cruzi. PMID:27872839
Ginkgotides: Proline-Rich Hevein-Like Peptides from Gymnosperm Ginkgo biloba. PMID:27857717
Comparative genomics of 9 novel Paenibacillus larvae bacteriophages. PMID:27738559
Draft Genome Sequence of the Emerging Bivalve Pathogen Vibrio tubiashii subsp. europaeus. PMID:27469949
A systems-oriented analysis of the grapevine R2R3-MYB transcription factor family uncovers new insights into the regulation of stilbene accumulation. PMID:27407139
Over-Expression of the Pikh Gene with a CaMV 35S Promoter Leads to Improved Blast Disease (Magnaporthe oryzae) Tolerance in Rice. PMID:27379107
Characterization of Five Novel Brevibacillus Bacteriophages and Genomic Comparison of Brevibacillus Phages. PMID:27304881
Gene Loss and Horizontal Gene Transfer Contributed to the Genome Evolution of the Extreme Acidophile "Ferrovum". PMID:27303384
Newly identified bacteriolytic enzymes that target a wide range of clinical isolates of Clostridium difficile. PMID:27260850
Genomes of parasitic nematodes (Meloidogyne hapla, Meloidogyne incognita, Ascaris suum and Brugia malayi) have a reduced complement of small RNA interference pathway genes: knockdown can reduce host infectivity of M. incognita. PMID:27126863
Two Groups of Thellungiella salsuginea RAVs Exhibit Distinct Responses and Sensitivity to Salt and ABA in Transgenic Arabidopsis. PMID:27093611
Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus "Ferrovum". PMID:26808278
Diet-induced extinctions in the gut microbiota compound over generations. PMID:26762459
Characterization of the general stress response in Bartonella henselae. PMID:26724735
A Putative Chloroplast Thylakoid Metalloprotease VIRESCENT3 Regulates Chloroplast Development in Arabidopsis thaliana. PMID:26702056
Draft Genome Sequence of the Marine Pathogen Vibrio coralliilyticus RE22. PMID:26634766
Database resources of the National Center for Biotechnology Information. PMID:26615191
Improving a Synechocystis-based photoautotrophic chassis through systematic genome mapping and validation of neutral sites. PMID:26490728
A Populus TIR1 gene family survey reveals differential expression patterns and responses to 1-naphthaleneacetic acid and stress treatments. PMID:26442033
Proteome analysis of shell matrix proteins in the brachiopod Laqueus rubellus. PMID:26279640
Mitogen-activated protein kinase cascades in Vitis vinifera. PMID:26257761
MsmK, an ATPase, Contributes to Utilization of Multiple Carbohydrates and Host Colonization of Streptococcus suis. PMID:26222651
Draft genome of Myxosarcina sp. strain GI1, a baeocytous cyanobacterium associated with the marine sponge Terpios hoshinota. PMID:26203339
Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147(T). PMID:26203323
Molecular characterization of heat-shock protein 90 gene and its expression in Gobiocypris rarus juveniles exposed to pentachlorophenol. PMID:26119907
Integrative conjugative elements of the ICEPan family play a potential role in Pantoea ananatis ecological diversification and antibiosis. PMID:26106378
Discovery of new protein families and functions: new challenges in functional metagenomics for biotechnologies and microbial ecology. PMID:26097471
A primase subunit essential for efficient primer synthesis by an archaeal eukaryotic-type primase. PMID:26095544
A novel highly differentially expressed gene in wheat endosperm associated with bread quality. PMID:26011437
Annotation and Classification of CRISPR-Cas Systems. PMID:25981466
Microevolution of Virulence-Related Genes in Helicobacter pylori Familial Infection. PMID:25978460
Acetylcholinesterase 1 in populations of organophosphate-resistant North American strains of the cattle tick, Rhipicephalus microplus (Acari: Ixodidae). PMID:25952704
A novel pore-forming toxin in type A Clostridium perfringens is associated with both fatal canine hemorrhagic gastroenteritis and fatal foal necrotizing enterocolitis. PMID:25853427
Features of two new proteins with OmpA-like domains identified in the genome sequences of Leptospira interrogans. PMID:25849456
The bactofilin cytoskeleton protein BacM of Myxococcus xanthus forms an extended β-sheet structure likely mediated by hydrophobic interactions. PMID:25803609
Improving the consistency of domain annotation within the Conserved Domain Database. PMID:25767294
Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales. PMID:25764277
Characterization of the serine acetyltransferase gene family of Vitis vinifera uncovers differences in regulation of OAS synthesis in woody plants. PMID:25741355
Whole-transcriptome survey of the putative ATP-binding cassette (ABC) transporter family genes in the latex-producing laticifers of Hevea brasiliensis. PMID:25615936
let-65 is cytoplasmic methionyl tRNA synthetase in C. elegans. PMID:25606464
Comparative genomic analysis of evolutionarily conserved but functionally uncharacterized membrane proteins in archaea: Prediction of novel components of secretion, membrane remodeling and glycosylation systems. PMID:25583072
INTEGRATING COMPUTATIONAL PROTEIN FUNCTION PREDICTION INTO DRUG DISCOVERY INITIATIVES. PMID:25530654
Identification of single nucleotide polymorphisms in Toll-like receptor candidate genes associated with tuberculosis infection in water buffalo (Bubalus bubalis). PMID:25496717
[FeFe]-hydrogenase abundance and diversity along a vertical redox gradient in Great Salt Lake, USA. PMID:25464382
Database resources of the National Center for Biotechnology Information. PMID:25398906
Cloning and Expression Profiling of the Polycomb Gene, Retinoblastoma-related Protein from Tomato Solanum lycopersicum L. PMID:25374451
A TIR domain protein from E. faecalis attenuates MyD88-mediated signaling and NF-κB activation. PMID:25369374
CLIP2 as radiation biomarker in papillary thyroid carcinoma. PMID:25284583
Expression profile of the Schistosoma japonicum degradome reveals differential protease expression patterns and potential anti-schistosomal intervention targets. PMID:25275570
Genomic analyses and transcriptional profiles of the glycoside hydrolase family 18 genes of the entomopathogenic fungus Metarhizium anisopliae. PMID:25232743
Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11(T) (= DSM 44721(T)). PMID:25197436
Mutations in NTRK3 suggest a novel signaling pathway in human congenital heart disease. PMID:25196463
Smoothened gene alterations in keratocystic odontogenic tumors. PMID:25189937
Molecular analysis of Aedes aegypti classical protein tyrosine phosphatases uncovers an ortholog of mammalian PTP-1B implicated in the control of egg production in mosquitoes. PMID:25137153
QTug.sau-3B is a major quantitative trait locus for wheat hexaploidization. PMID:25128436
Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes. PMID:25113822
Immunolocalization of anti-hsf1 to the acetabular glands of infectious schistosomes suggests a non-transcriptional function for this transcriptional activator. PMID:25078989
Cloning and molecular characterization of a flavin-dependent oxidoreductase gene from barley. PMID:24961571
An aspartyl cathepsin, CTH3, is essential for proprotein processing during secretory granule maturation in Tetrahymena thermophila. PMID:24943840
Genome-wide analysis of regulatory proteases sequences identified through bioinformatics data mining in Taenia solium. PMID:24899069
Differential inductions of phenylalanine ammonia-lyase and chalcone synthase during wounding, salicylic acid treatment, and salinity stress in safflower, Carthamus tinctorius. PMID:24865400
First report of a thioredoxin homologue in jellyfish: molecular cloning, expression and antioxidant activity of CcTrx1 from Cyanea capillata. PMID:24824597
Enzymatic synthesis of bioinformatically predicted microcin C-like compounds encoded by diverse bacteria. PMID:24803518
Genome-wide identification, characterization and expression analysis of the auxin response factor gene family in Vitis vinifera. PMID:24792421
Comparative analysis of P450 signature motifs EXXR and CXG in the large and diverse kingdom of fungi: identification of evolutionarily conserved amino acid patterns characteristic of P450 family. PMID:24743800
Purification and characterization of novel cationic peroxidases from Asparagus acutifolius L. with biotechnological applications. PMID:24740695
Classification and evolution of type II CRISPR-Cas systems. PMID:24728998
Reassessing domain architecture evolution of metazoan proteins: major impact of gene prediction errors. PMID:24710207
A chimeric transcript containing Psy1 and a potential mRNA is associated with yellow flesh color in tomato accession PI 114490. PMID:24663441
Identification of ATP8B1 as a blood-brain barrier-enriched protein. PMID:24643366
Gene cloning and expression analysis of IRF1 in half-smooth tongue sole (Cynoglossus semilaevis). PMID:24584575
Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1(T) (= DSM 45190(T)). PMID:24501635
An EGFR gene of the Pacific oyster Crassostrea gigas functions in wound healing and promotes cell proliferation. PMID:24469720
Characterization and functional analysis of eugenol O-methyltransferase gene reveal metabolite shifts, chemotype specific differential expression and developmental regulation in Ocimum tenuiflorum L. PMID:24420851
Identification of a Coding Sequence and Structure Modeling of a Glycine-Rich RNA-Binding Protein (CmGRP1) from Chelidonium majus L. PMID:24415842
First report of a peroxiredoxin homologue in jellyfish: molecular cloning, expression and functional characterization of CcPrx4 from Cyanea capillata. PMID:24413803
Response of the calcifying coccolithophore Emiliania huxleyi to low pH/high pCO2: from physiology to molecular level. PMID:24391258
Three antagonistic cyclic di-GMP-catabolizing enzymes promote differential Dot/Icm effector delivery and intracellular survival at the early steps of Legionella pneumophila infection. PMID:24379287
Germline loss-of-function mutations in LZTR1 predispose to an inherited disorder of multiple schwannomas. PMID:24362817
Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle. PMID:24304644
Database resources of the National Center for Biotechnology Information. PMID:24259429
Plastid-localized glutathione reductase2-regulated glutathione redox status is essential for Arabidopsis root apical meristem maintenance. PMID:24249834
Whole-genome survey of the putative ATP-binding cassette transporter family genes in Vitis vinifera. PMID:24244377
Classification, naming and evolutionary history of glycosyltransferases from sequenced green and red algal genomes. PMID:24146880
A novel type of N-acetylglutamate synthase is involved in the first step of arginine biosynthesis in Corynebacterium glutamicum. PMID:24138314
Haemophilus parainfluenzae expresses diverse lipopolysaccharide O-antigens using ABC transporter and Wzy polymerase-dependent mechanisms. PMID:24035104
Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle. PMID:24023907
Shotgun metagenomics indicates novel family A DNA polymerases predominate within marine virioplankton. PMID:23985748
SHARP: genome-scale identification of gene-protein-reaction associations in cyanobacteria. PMID:23975204
MYRF is a membrane-associated transcription factor that autoproteolytically cleaves to directly activate myelin genes. PMID:23966833
Characterization of three novel adhesins of Leptospira interrogans. PMID:23958908
Starch biosynthesis in cassava: a genome-based pathway reconstruction and its exploitation in data integration. PMID:23938102
Analysis of unannotated equine transcripts identified by mRNA sequencing. PMID:23922931
Genome-wide analysis of the Populus Hsp90 gene family reveals differential expression patterns, localization, and heat stress responses. PMID:23915275
TraG encoded by the pIP501 type IV secretion system is a two-domain peptidoglycan-degrading enzyme essential for conjugative transfer. PMID:23913323
Extracellular proteome analysis of Leptospira interrogans serovar Lai. PMID:23895271
Putative osmosensor--OsHK3b--a histidine kinase protein from rice shows high structural conservation with its ortholog AtHK1 from Arabidopsis. PMID:23869567
Reciprocal regulation of NF-kB (Relish) and Subolesin in the tick vector, Ixodes scapularis. PMID:23776567
Identification of multiple interacting alleles conferring low glycerol and high ethanol yield in Saccharomyces cerevisiae ethanolic fermentation. PMID:23759206
Characterizing protein domain associations by Small-molecule ligand binding. PMID:23745168
Structural and functional insight into the universal stress protein family. PMID:23745136
Gene prediction in metagenomic fragments based on the SVM algorithm. PMID:23735199
Identification of novel protein domains required for the expression of an active dehydratase fragment from a polyunsaturated fatty acid synthase. PMID:23696301
Anaplasma phagocytophilum inhibits apoptosis and promotes cytoskeleton rearrangement for infection of tick cells. PMID:23630955
Mutations in Tyr808 reveal a potential auto-inhibitory mechanism of guanylate cyclase-B regulation. PMID:23586811
SH3 interactome conserves general function over specific form. PMID:23549480
Computational analysis of common bean (Phaseolus vulgaris L., genotype BAT93) lycopene β-cyclase and β-carotene hydroxylase gene's cDNA. PMID:23519320
An artificial functional family filter in homolog searching in next-generation sequencing metagenomics. PMID:23516532
Genomic reconstruction of the transcriptional regulatory network in Bacillus subtilis. PMID:23504016
Mutualistic co-evolution of type III effector genes in Sinorhizobium fredii and Bradyrhizobium japonicum. PMID:23468637
From Identification to Characterization of the Multiple Sclerosis Susceptibility Gene CLEC16A. PMID:23439554
Exome sequencing identifies mutations in the gene TTC7A in French-Canadian cases with hereditary multiple intestinal atresia. PMID:23423984
Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093(T) (= DSM 44683(T)). PMID:23408721
Identification, localization, and functional implications of the microdomain-forming stomatin family in the ciliated protozoan Paramecium tetraurelia. PMID:23376944
Genome-wide landscape of alternative splicing events in Brachypodium distachyon. PMID:23297300
Genome-wide identification of laccase gene family in three Phytophthora species. PMID:23283515
Use of a novel Escherichia coli-leuconostoc shuttle vector for metabolic engineering of Leuconostoc citreum to overproduce D-lactate. PMID:23241984
Conservation and early expression of zebrafish tyrosine kinases support the utility of zebrafish as a model for tyrosine kinase biology. PMID:23234507
Learning virulent proteins from integrated query networks. PMID:23198735
Database resources of the National Center for Biotechnology Information. PMID:23193264
Molecular evolution of translin superfamily proteins within the genomes of eubacteria, archaea and eukaryotes. PMID:23188094
ST proteins, a new family of plant tandem repeat proteins with a DUF2775 domain mainly found in Fabaceae and Asteraceae. PMID:23134664
The pectin lyases in Arabidopsis thaliana: evolution, selection and expression profiles. PMID:23056537
Genome sequence of the bacterium Streptomyces davawensis JCM 4913 and heterologous production of the unique antibiotic roseoflavin. PMID:23043000
Roles of the structural symbiosis polysaccharide (syp) genes in host colonization, biofilm formation, and polysaccharide biosynthesis in Vibrio fischeri. PMID:23042998
Biophysical and bioinformatic analyses implicate the Treponema pallidum Tp34 lipoprotein (Tp0971) in transition metal homeostasis. PMID:23042995
Domain organization of the polymerizing mannosyltransferases involved in synthesis of the Escherichia coli O8 and O9a lipopolysaccharide O-antigens. PMID:22989876
Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production. PMID:22967216
Olive phenolic compounds: metabolic and transcriptional profiling during fruit development. PMID:22963618
Genome sequence of Staphylococcus equorum subsp. equorum Mu2, isolated from a French smear-ripened cheese. PMID:22933766
Virtual interactomics of proteins from biochemical standpoint. PMID:22928109
Tertiary endosymbiosis in two dinotoms has generated little change in the mitochondrial genomes of their dinoflagellate hosts and diatom endosymbionts. PMID:22916303
Koi herpesvirus encodes and expresses a functional interleukin-10. PMID:22896613
Novel Podoviridae family bacteriophage infecting Weissella cibaria isolated from Kimchi. PMID:22885743
Rapid-throughput skeletal phenotyping of 100 knockout mice identifies 9 new genes that determine bone strength. PMID:22876197
NESdb: a database of NES-containing CRM1 cargoes. PMID:22833564
Novel bacteriophages containing a genome of another bacteriophage within their genomes. PMID:22815791
Structures of the PelD cyclic diguanylate effector involved in pellicle formation in Pseudomonas aeruginosa PAO1. PMID:22810222
Identification of a novel calcium binding motif based on the detection of sequence insertions in the animal peroxidase domain of bacterial proteins. PMID:22808235
Transposable elements in phytopathogenic Verticillium spp.: insights into genome evolution and inter- and intra-specific diversification. PMID:22800085
Characterization of a Leuconostoc bacteriophage infecting flavor producers of cheese starter cultures. PMID:22798359
Context-specific ontology integration: a bayesian approach. PMID:22779057
A bayesian translational framework for knowledge propagation, discovery, and integration under specific contexts. PMID:22779044
Assessment of the structural and functional impact of in-frame mutations of the DMD gene, using the tools included in the eDystrophin online database. PMID:22776072
Predicted protein subcellular localization in dominant surface ocean bacterioplankton. PMID:22773648
An ABC transporter and an outer membrane lipoprotein participate in posttranslational activation of type VI secretion in Pseudomonas aeruginosa. PMID:22765374
Genome sequence of temperate bacteriophage Psymv2 from Antarctic Dry Valley soil isolate Psychrobacter sp. MV2. PMID:22760730
Evolution of the RALF Gene Family in Plants: Gene Duplication and Selection Patterns. PMID:22745530
Molecular interactions between the olive and the fruit fly Bactrocera oleae. PMID:22694925
A positive selection approach identifies residues important for folding of Salmonella enterica Pat, an N(ε)-lysine acetyltransferase that regulates central metabolism enzymes. PMID:22677774
The type III secretion system is necessary for the development of a pathogenic and endophytic interaction between Herbaspirillum rubrisubalbicans and Poaceae. PMID:22672506
Recombineering: A powerful tool for modification of bacteriophage genomes. PMID:22666652
dbCAN: a web resource for automated carbohydrate-active enzyme annotation. PMID:22645317
Myb-binding protein 1a (Mybbp1a) regulates levels and processing of pre-ribosomal RNA. PMID:22645127
Evolution of saxitoxin synthesis in cyanobacteria and dinoflagellates. PMID:22628533
Nucleoplasmic/nucleolar translocation and identification of a nuclear localization signal (NLS) in Dictyostelium BAF60a/SMARCD1 homologue Snf12. PMID:22623154
Identification and functional analysis of the S-layer protein SplA of Paenibacillus larvae, the causative agent of American Foulbrood of honey bees. PMID:22615573
Disruption of the Eng18B ENGase gene in the fungal biocontrol agent Trichoderma atroviride affects growth, conidiation and antagonistic ability. PMID:22586463
The conserved polarity factor podJ1 impacts multiple cell envelope-associated functions in Sinorhizobium meliloti. PMID:22553970
Chitinases in Pneumocystis carinii pneumonia. PMID:22535444
Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species. PMID:22534164
Zebrafish HSF4: a novel protein that shares features of both HSF1 and HSF4 of mammals. PMID:22528049
Regulation of the vapBC-1 toxin-antitoxin locus in nontypeable Haemophilus influenzae. PMID:22427824
Population genomics of resource exploitation: insights from gene expression profiles of two Daphnia ecotypes fed alternate resources. PMID:22423327
Induced point mutations in the phytoene synthase 1 gene cause differences in carotenoid content during tomato fruit ripening. PMID:22408384
Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenax. PMID:22408157
Functional analysis of the degradation of cellulosic substrates by a Chaetomium globosum endophytic isolate. PMID:22389369
Enzymatic catalysis of anti-Baldwin ring closure in polyether biosynthesis. PMID:22388816
Coffee cysteine proteinases and related inhibitors with high expression during grain maturation and germination. PMID:22380654
Arabidopsis trithorax-related3/SET domain GROUP2 is required for the winter-annual habit of Arabidopsis thaliana. PMID:22378382
Analysis of intracellular expressed proteins of Mycobacterium tuberculosis clinical isolates. PMID:22375954
Flower-deficient mice have reduced susceptibility to skin papilloma formation. PMID:22362363
Molecular characterization of a Cyrtochilum loxense Somatic Embryogenesis Receptor-like Kinase (SERK) gene expressed during somatic embryogenesis. PMID:22350407
Structural elucidation of dextran degradation mechanism by streptococcus mutans dextranase belonging to glycoside hydrolase family 66. PMID:22337884
Surveying the manifold divergence of an entire protein class for statistical clues to underlying biochemical mechanisms. PMID:22331370
Recombinant protein expression in Pichia pastoris strains with an engineered methanol utilization pathway. PMID:22330134
Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila. PMID:22328714
Evidence of an evolutionarily conserved LMBR1 domain-containing protein that associates with endocytic cups and plays a role in cell migration in dictyostelium discoideum. PMID:22307974
Systematic analysis of plant-specific B3 domain-containing proteins based on the genome resources of 11 sequenced species. PMID:22302388
Structural and biochemical characterization of human mitochondrial branched-chain α-ketoacid dehydrogenase phosphatase. PMID:22291014
Roles of protein kinase A and adenylate cyclase in light-modulated cellulase regulation in Trichoderma reesei. PMID:22286997
Identification and characterization of a salt stress-inducible zinc finger protein from Festuca arundinacea. PMID:22272737
Behavior and target site selection of conjugative transposon Tn916 in two different strains of toxigenic Clostridium difficile. PMID:22267673
Genome sequence of Corynebacterium casei UCMA 3821, isolated from a smear-ripened cheese. PMID:22247534
The porcine Gpr3 gene: molecular cloning, characterization and expression level in tissues and cumulus-oocyte complexes during in vitro maturation. PMID:22207171
Cell-associated hemolysis induced by Helicobacter pylori is mediated by phospholipases with mitogen-activated protein kinase-activating properties. PMID:22205825
Modulating protein-protein interactions with small molecules: the importance of binding hotspots. PMID:22198293
Role for cheR of Vibrio fischeri in the Vibrio-squid symbiosis. PMID:22182211
The structural heterogeneity of radial spokes in cilia and flagella is conserved. PMID:22170736
Bioinformatic analysis and post-translational modification crosstalk prediction of lysine acetylation. PMID:22164248
A single ancient origin for prototypical serine/arginine-rich splicing factors. PMID:22158759
Phosphorylation in protein-protein binding: effect on stability and function. PMID:22153503
Fatty acyl-CoA reductases of birds. PMID:22151413
Phenotypic variation and host interactions of Xenorhabdus bovienii SS-2004, the entomopathogenic symbiont of Steinernema jollieti nematodes. PMID:22151385
Identification of Anaplasma marginale type IV secretion system effector proteins. PMID:22140462
Database resources of the National Center for Biotechnology Information. PMID:22140104
TRY-5 is a sperm-activating protease in Caenorhabditis elegans seminal fluid. PMID:22125495
GbPDF1 is involved in cotton fiber initiation via the core cis-element HDZIP2ATATHB2. PMID:22123900
Phylogenetic analysis and classification of the fungal bHLH domain. PMID:22114358
Displacement of the canonical single-stranded DNA-binding protein in the Thermoproteales. PMID:22106294
Origins and evolution of the HET-s prion-forming protein: searching for other amyloid-forming solenoids. PMID:22096554
Thrombin a-chain: activation remnant or allosteric effector? PMID:22084659
Transcriptome analysis of orange-spotted grouper (Epinephelus coioides) spleen in response to Singapore grouper iridovirus. PMID:22078027
Single-domain parvulins constitute a specific marker for recently proposed deep-branching archaeal subgroups. PMID:22065628
Determination of the crystal structure and active residues of FabV, the enoyl-ACP reductase from Xanthomonas oryzae. PMID:22039545
Identification of a eukaryotic reductive dechlorinase and characterization of its mechanism of action on its natural substrate. PMID:22035794
Molecular dissection of novel trafficking and processing of the Toxoplasma gondii rhoptry metalloprotease toxolysin-1. PMID:22035499
Colistin-resistant, lipopolysaccharide-deficient Acinetobacter baumannii responds to lipopolysaccharide loss through increased expression of genes involved in the synthesis and transport of lipoproteins, phospholipids, and poly-β-1,6-N-acetylglucosamine. PMID:22024825
Whole-exome sequencing identifies homozygous AFG3L2 mutations in a spastic ataxia-neuropathy syndrome linked to mitochondrial m-AAA proteases. PMID:22022284
Thousands of rab GTPases for the cell biologist. PMID:22022256
Characterization of the Bacteroides fragilis bfr gene product identifies a bacterial DPS-like protein and suggests evolutionary links in the ferritin superfamily. PMID:22020642
Identification and characterization of the Rhizobium sp. strain GIN611 glycoside oxidoreductase resulting in the deglycosylation of ginsenosides. PMID:22020506
Biochemical and thermodynamic analyses of Salmonella enterica Pat, a multidomain, multimeric N(ε)-lysine acetyltransferase involved in carbon and energy metabolism. PMID:22010215
Characterization of a full-length endogenous beta-retrovirus, EqERV-beta1, in the genome of the horse (Equus caballus). PMID:21994749
An α/β hydrolase and associated Per-ARNT-Sim domain comprise a bipartite sensing module coupled with diverse output domains. PMID:21980452
Analyses of the oligopeptide transporter gene family in poplar and grape. PMID:21943393
The Roles of the Methyl-CpG Binding Proteins in Cancer. PMID:21941618
Modulation of catalytic activity in multi-domain protein tyrosine phosphatases. PMID:21931847
A homing endonuclease and the 50-nt ribosomal bypass sequence of phage T4 constitute a mobile DNA cassette. PMID:21930924
Molecular characterization of UpaB and UpaC, two new autotransporter proteins of uropathogenic Escherichia coli CFT073. PMID:21930758
Characterization and tissue-specific expression patterns of the Plasmodium chabaudi cir multigene family. PMID:21929749
A kinesin-1 binding motif in vaccinia virus that is widespread throughout the human genome. PMID:21915095
The role of stat1b in zebrafish hematopoiesis. PMID:21914475
Helicobacter pylori exploits a unique repertoire of type IV secretion system components for pilus assembly at the bacteria-host cell interface. PMID:21909278
Defense islands in bacterial and archaeal genomes and prediction of novel defense systems. PMID:21908672
Multicopy suppression screening of Saccharomyces cerevisiae Identifies the ubiquitination machinery as a main target for improving growth at low temperatures. PMID:21908639
Computational approaches to selecting and optimising targets for structural biology. PMID:21906678
MrkH, a novel c-di-GMP-dependent transcriptional activator, controls Klebsiella pneumoniae biofilm formation by regulating type 3 fimbriae expression. PMID:21901098
Mimivirus reveals Mre11/Rad50 fusion proteins with a sporadic distribution in eukaryotes, bacteria, viruses and plasmids. PMID:21899737
A recurrent missense mutation in GJA3 associated with autosomal dominant cataract linked to chromosome 13q. PMID:21897748
Identification of a conserved protein involved in anaerobic unsaturated fatty acid synthesis in Neiserria gonorrhoeae: implications for facultative and obligate anaerobes that lack FabA. PMID:21895795
Genetic response to bacteriophage infection in Lactococcus lactis reveals a four-strand approach involving induction of membrane stress proteins, D-alanylation of the cell wall, maintenance of proton motive force, and energy conservation. PMID:21880765
Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PMID:21876677
Expression during host infection and localization of Yersinia pestis autotransporter proteins. PMID:21873491
Steroid receptor coactivator 2 modulates steroid-dependent male sexual behavior and neuroplasticity in Japanese quail (Coturnix japonica). PMID:21854393
Topology of 1-acyl-sn-glycerol-3-phosphate acyltransferases SLC1 and ALE1 and related membrane-bound O-acyltransferases (MBOATs) of Saccharomyces cerevisiae. PMID:21849510
Functional characterization of cellulases identified from the cow rumen fungus Neocallimastix patriciarum W5 by transcriptomic and secretomic analyses. PMID:21849025
Sequencing of bovine herpesvirus 4 v.test strain reveals important genome features. PMID:21846388
Crystal structure of the Haemophilus influenzae Hap adhesin reveals an intercellular oligomerization mechanism for bacterial aggregation. PMID:21841773
SHARPIN negatively associates with TRAF2-mediated NFκB activation. PMID:21829440
Identification of an ATPase, MsmK, which energizes multiple carbohydrate ABC transporters in Streptococcus pneumoniae. PMID:21825065
Analysis of al-2 mutations in Neurospora. PMID:21818281
Plasmids of raw milk cheese isolate Lactococcus lactis subsp. lactis biovar diacetylactis DPC3901 suggest a plant-based origin for the strain. PMID:21803914
The major antigenic membrane protein of "Candidatus Phytoplasma asteris" selectively interacts with ATP synthase and actin of leafhopper vectors. PMID:21799902
The complexity of Rhipicephalus (Boophilus) microplus genome characterised through detailed analysis of two BAC clones. PMID:21777481
Molecular identification of bacteria by total sequence screening: determining the cause of death in ancient human subjects. PMID:21765907
The atypical two-component sensor kinase Lpl0330 from Legionella pneumophila controls the bifunctional diguanylate cyclase-phosphodiesterase Lpl0329 to modulate bis-(3'-5')-cyclic dimeric GMP synthesis. PMID:21757706
Characterization of novel OmpA-like protein of Leptospira interrogans that binds extracellular matrix molecules and plasminogen. PMID:21755014
Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms. PMID:21745387
Computational analysis of DNA replicases in double-stranded DNA viruses: relationship with the genome size. PMID:21742758
Neurospora crassa homologue of Neuronal Calcium Sensor-1 has a role in growth, calcium stress tolerance, and ultraviolet survival. PMID:21728141
Identification of a chemoreceptor zinc-binding domain common to cytoplasmic bacterial chemoreceptors. PMID:21725005
The oral metagenome in health and disease. PMID:21716308
The complete genome sequence and genetic analysis of ΦCA82 a novel uncultured microphage from the turkey gastrointestinal system. PMID:21714899
The dynamics of vertebrate homeobox gene evolution: gain and loss of genes in mouse and human lineages. PMID:21679462
A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression. PMID:21672921
Calpain chronicle--an enzyme family under multidisciplinary characterization. PMID:21670566
Diversification, phylogeny and evolution of auxin response factor (ARF) family: insights gained from analyzing maize ARF genes. PMID:21667107
Ligand-binding PAS domains in a genomic, cellular, and structural context. PMID:21663441
Genomic analysis reveals versatile organisms for quorum quenching enzymes: acyl-homoserine lactone-acylase and -lactonase. PMID:21660112
Mutations in FYCO1 cause autosomal-recessive congenital cataracts. PMID:21636066
Site-specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides. PMID:21635780
Molecular characterization and transcriptional analysis of the olive flounder (Paralichthys olivaceus) YGHL1 gene in response to hypoxia and infection. PMID:21633898
Sequencing and comparative genome analysis of two pathogenic Streptococcus gallolyticus subspecies: genome plasticity, adaptation and virulence. PMID:21633709
walK and clpP mutations confer reduced vancomycin susceptibility in Staphylococcus aureus. PMID:21628539
Anterior-posterior axis specification in Drosophila oocytes: identification of novel bicoid and oskar mRNA localization factors. PMID:21625003
The riboswitch regulates a thiamine pyrophosphate ABC transporter of the oral spirochete Treponema denticola. PMID:21622748
Interactions among Trypanosoma brucei RAD51 paralogues in DNA repair and antigenic variation. PMID:21615552
Gain of chromosome band 7q11 in papillary thyroid carcinomas of young patients is associated with exposure to low-dose irradiation. PMID:21606360
Novel transposable elements from Anopheles gambiae. PMID:21605407
Identification and characterization of CbeI, a novel thermostable restriction enzyme from Caldicellulosiruptor bescii DSM 6725 and a member of a new subfamily of HaeIII-like enzymes. PMID:21604181
Identification of tissue-specific, abiotic stress-responsive gene expression patterns in wine grape (Vitis vinifera L.) based on curation and mining of large-scale EST data sets. PMID:21592389
Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes. PMID:21571812
In Medicago truncatula, water deficit modulates the transcript accumulation of components of small RNA pathways. PMID:21569262
An ENU-mutagenesis screen in the mouse: identification of novel developmental gene functions. PMID:21559415
LFR1 ferric iron reductase of Leishmania amazonensis is essential for the generation of infective parasite forms. PMID:21558274
The HyPRP gene EARLI1 has an auxiliary role for germinability and early seedling development under low temperature and salt stress conditions in Arabidopsis thaliana. PMID:21556912
Genetic and epigenetic association studies suggest a role of microRNA biogenesis gene exportin-5 (XPO5) in breast tumorigenesis. PMID:21552306
Anaerobic carbon monoxide dehydrogenase diversity in the homoacetogenic hindgut microbial communities of lower termites and the wood roach. PMID:21541298
Sox4 mediates Tbx3 transcriptional regulation of the gap junction protein Cx43. PMID:21538160
Differential chitinase activity and production within Francisella species, subspecies, and subpopulations. PMID:21531796
Overcoming redundancy: an RNAi enhancer screen for morphogenesis genes in Caenorhabditis elegans. PMID:21527776
The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist. PMID:21526192
Genetic basis for daptomycin resistance in enterococci. PMID:21502617
Molecular and biochemical characterization of the 5-nitroanthranilic acid degradation pathway in Bradyrhizobium sp. strain JS329. PMID:21498645
Genes associated with 2-methylisoborneol biosynthesis in cyanobacteria: isolation, characterization, and expression in response to light. PMID:21490938
Remote thioredoxin recognition using evolutionary conservation and structural dynamics. PMID:21481770
Drosophila Ctf4 is essential for efficient DNA replication and normal cell cycle progression. PMID:21470422
Gecko CD59 is implicated in proximodistal identity during tail regeneration. PMID:21464923
Using context to improve protein domain identification. PMID:21453511
Drosophila PI4KIIIalpha is required in follicle cells for oocyte polarization and Hippo signaling. PMID:21429988
Elucidation of functional markers from Aspergillus nidulans developmental regulator FlbB and their phylogenetic distribution. PMID:21423749
Assembling a protein-protein interaction map of the SSU processome from existing datasets. PMID:21423703
Genome sequence of Helicobacter suis supports its role in gastric pathology. PMID:21414191
BacM, an N-terminally processed bactofilin of Myxococcus xanthus, is crucial for proper cell shape. PMID:21414039
Regulation of virulence by the RevR response regulator in Clostridium perfringens. PMID:21402758
Molecular basis for mycophenolic acid biosynthesis in Penicillium brevicompactum. PMID:21398490
Sensing and adhesion are adaptive functions in the plant pathogenic xanthomonads. PMID:21396107
Catalytic subunits atpα and atpβ from the Pacific white shrimp Litopenaeus vannamei F(O)F (1) ATP-synthase complex: cDNA sequences, phylogenies, and mRNA quantification during hypoxia. PMID:21384180
Analysis of beta-carotene hydroxylase gene cDNA isolated from the American oil-palm (Elaeis oleifera) mesocarp tissue cDNA library. PMID:21364789
Molecular dynamics simulation of the Staphylococcus aureus YsxC protein: molecular insights into ribosome assembly and allosteric inhibition of the protein. PMID:21360172
Modeling of the structure and interactions of the B. anthracis antitoxin, MoxX: deletion mutant studies highlight its modular structure and repressor function. PMID:21336656
A New Zealand Black-derived locus suppresses chronic graft-versus-host disease and autoantibody production through nonlymphoid bone marrow-derived cells. PMID:21335485
Hyaline fibromatosis syndrome inducing mutations in the ectodomain of anthrax toxin receptor 2 can be rescued by proteasome inhibitors. PMID:21328543
Multi-genome identification and characterization of chlamydiae-specific type III secretion substrates: the Inc proteins. PMID:21324157
Evolutionarily conserved orthologous families in phages are relatively rare in their prokaryotic hosts. PMID:21317336
Regulation and consequence of serine catabolism in Streptococcus pyogenes. PMID:21317320
Molecular characterization of major allergens Ara h 1, 2, 3 in peanut seed. PMID:21305299
FunSecKB: the Fungal Secretome KnowledgeBase. PMID:21300622
ZouA, a putative relaxase, is essential for dna amplification in Streptomyces kanamyceticus. PMID:21296959
Tissue culture-induced flower-color changes in Saintpaulia caused by excision of the transposon inserted in the flavonoid 3', 5' hydroxylase (F3'5'H) promoter. PMID:21293860
Characterization of the deleted in autism 1 protein family: implications for studying cognitive disorders. PMID:21283809
Identification of active loci of a human endogenous retrovirus in neurons of patients with amyotrophic lateral sclerosis. PMID:21280084
EsaD, a secretion factor for the Ess pathway in Staphylococcus aureus. PMID:21278286
DIA1R is an X-linked gene related to Deleted In Autism-1. PMID:21264219
Efficient In Vivo Selection of a Novel Tumor-Associated Peptide from a Phage Display Library. PMID:21258297
Role of a Zn-independent DksA in Zn homeostasis and stringent response. PMID:21255113
Deep sequencing-based analysis of the anaerobic stimulon in Neisseria gonorrhoeae. PMID:21251255
ePlant and the 3D data display initiative: integrative systems biology on the world wide web. PMID:21249219
Requirement for the amino-terminal domain of sindbis virus nsP4 during virus infection. PMID:21248049
Bioinformatic identification of novel protein phosphatases in the dog genome. PMID:21240543
Nhe1 is essential for potassium but not calcium facilitation of cell motility and the monovalent cation requirement for chemotactic orientation in Dictyostelium discoideum. PMID:21239624
Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover. PMID:21232122
Molecular cloning and characterization of GhAPm, a gene encoding the μ subunit of the clathrin-associated adaptor protein complex that is associated with cotton (Gossypium hirsutum) fiber development. PMID:21225463
Maternal de novo triple mosaicism for two single OCRL nucleotide substitutions (c.1736A>T, c.1736A>G) in a Lowe syndrome family. PMID:21225285
The role of carbohydrate-binding module (CBM) repeat of a multimodular xylanase (XynX) from Clostridium thermocellum in cellulose and xylan binding. PMID:21221946
The late stage of autophagy: cellular events and molecular regulation. PMID:21204017
Candidate Mycobacterium tuberculosis genes targeted by human microRNAs. PMID:21203954
Analyses of both the alkB gene transcriptional start site and alkB promoter-inducing properties of Rhodococcus sp. strain BCP1 grown on n-alkanes. PMID:21193665
The maize ALDH protein superfamily: linking structural features to functional specificities. PMID:21190582
New insights into the genetic organization of the FK228 biosynthetic gene cluster in Chromobacterium violaceum no. 968. PMID:21183645
Gene duplication and divergence of long wavelength-sensitive opsin genes in the guppy, Poecilia reticulata. PMID:21170644
Genetics coupled to quantitative intact proteomics links heritable aphid and endosymbiont protein expression to circulative polerovirus transmission. PMID:21159868
Human cytomegalovirus tegument protein pUL71 is required for efficient virion egress. PMID:21151777
Structure and expression of the maize (Zea mays L.) SUN-domain protein gene family: evidence for the existence of two divergent classes of SUN proteins in plants. PMID:21143845
Expression of SbGSTU (tau class glutathione S-transferase) gene isolated from Salicornia brachiata in tobacco for salt tolerance. PMID:21136169
Canonical protein splicing of a class 1 intein that has a class 3 noncanonical sequence motif. PMID:21131486
Evolution of domain promiscuity in eukaryotic genomes--a perspective from the inferred ancestral domain architectures. PMID:21127809
The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese. PMID:21124797
TaABC1, a member of the activity of bc1 complex protein kinase family from common wheat, confers enhanced tolerance to abiotic stresses in Arabidopsis. PMID:21115661
Characterization of a KCS-like KASII from Jessenia bataua that elongates saturated and monounsaturated stearic acids in Arabidopsis thaliana. PMID:21113689
CDD: a Conserved Domain Database for the functional annotation of proteins. PMID:21109532
Two transcription factors are necessary for iron homeostasis in a salt-dwelling archaeon. PMID:21109526
Characterization of a mycovirus associated with the brown discoloration of edible mushroom, Flammulina velutipes. PMID:21106114
Cloning, characterization and transcriptional analysis of two phosphate acetyltransferase isoforms from Azotobacter vinelandii. PMID:21104132
Database resources of the National Center for Biotechnology Information. PMID:21097890
Fur and the novel regulator YqjI control transcription of the ferric reductase gene yqjH in Escherichia coli. PMID:21097627
Genomic and functional analyses of Rhodococcus equi phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7. PMID:21097585
RTEL1: an essential helicase for telomere maintenance and the regulation of homologous recombination. PMID:21097466
The structure of the CRISPR-associated protein Csa3 provides insight into the regulation of the CRISPR/Cas system. PMID:21093452
Nme gene family evolutionary history reveals pre-metazoan origins and high conservation between humans and the sea anemone, Nematostella vectensis. PMID:21085602
PhEVER: a database for the global exploration of virus-host evolutionary relationships. PMID:21081560
Aerobic degradation of mercaptosuccinate by the gram-negative bacterium Variovorax paradoxus strain B4. PMID:21075928
Evolutionary history of tissue kallikreins. PMID:21072173
A brain-derived MeCP2 complex supports a role for MeCP2 in RNA processing. PMID:21070191
Viral security proteins: counteracting host defences. PMID:21060318
Alleviating cancer drug toxicity by inhibiting a bacterial enzyme. PMID:21051639
P2CS: a database of prokaryotic two-component systems. PMID:21051349
Mechanisms of protein oligomerization, the critical role of insertions and deletions in maintaining different oligomeric states. PMID:21048085
Characterization of Escherichia coli EutD: a phosphotransacetylase of the ethanolamine operon. PMID:21046341
Of bits and bugs--on the use of bioinformatics and a bacterial crystal structure to solve a eukaryotic repeat-protein structure. PMID:20976240
Autophagy in protists. PMID:20962583
The dyslexia-associated KIAA0319 protein undergoes proteolytic processing with {gamma}-secretase-independent intramembrane cleavage. PMID:20943657
Global profiling of proteolysis during rupture of Plasmodium falciparum from the host erythrocyte. PMID:20943600
Molecular and phylogenetic characterization of the sieve element occlusion gene family in Fabaceae and non-Fabaceae plants. PMID:20932300
An improved, high-quality draft genome sequence of the Germination-Arrest Factor-producing Pseudomonas fluorescens WH6. PMID:20920191
Characterization of a novel riboswitch-regulated lysine transporter in Aggregatibacter actinomycetemcomitans. PMID:20889741
PRIC295, a Nuclear Receptor Coactivator, Identified from PPARα-Interacting Cofactor Complex. PMID:20885938
Identification of novel cyclic nucleotide phosphodiesterase gene cDNAs in the brain of guinea pig. PMID:20882062
Burkholderia type VI secretion systems have distinct roles in eukaryotic and bacterial cell interactions. PMID:20865170
Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential. PMID:20865041
A Rhodobacter capsulatus member of a universal permease family imports molybdate and other oxyanions. PMID:20851900
Legionella pneumophila strain 130b possesses a unique combination of type IV secretion systems and novel Dot/Icm secretion system effector proteins. PMID:20833813
Prototypes of elementary functional loops unravel evolutionary connections between protein functions. PMID:20823313
Identification of a gene essential for protoporphyrinogen IX oxidase activity in the cyanobacterium Synechocystis sp. PCC6803. PMID:20823222
Bioinformatic analysis of the genome of infectious salmon anemia virus associated with outbreaks with high mortality in Chile. PMID:20810724
GolgiP: prediction of Golgi-resident proteins in plants. PMID:20733061
Mouse Emi2 as a distinctive regulatory hub in second meiotic metaphase. PMID:20724447
The proximal signaling network of the BCR-ABL1 oncogene shows a modular organization. PMID:20697350
Mycobacterium marinum MMAR_2380, a predicted transmembrane acyltransferase, is essential for the presence of the mannose cap on lipoarabinomannan. PMID:20688818
More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology. PMID:20686689
Ang2/fat-free is a conserved subunit of the Golgi-associated retrograde protein complex. PMID:20685960
Requirement of the nitrogen starvation-induced protein Sll0783 for polyhydroxybutyrate accumulation in Synechocystis sp. strain PCC 6803. PMID:20675451
Molecular evolution of glycinin and β-conglycinin gene families in soybean (Glycine max L. Merr.). PMID:20668431
The construction and use of log-odds substitution scores for multiple sequence alignment. PMID:20657661
The insertion sequences of Anabaena sp. strain PCC 7120 and their effects on its open reading frames. PMID:20656907
Temporal patterns in glycolate-utilizing bacterial community composition correlate with phytoplankton population dynamics in humic lakes. PMID:20652236
From complete genome sequence to 'complete' understanding? PMID:20647113
Nucleotide sequence and genome organization of Dweet mottle virus and its relationship to members of the family Betaflexiviridae. PMID:20644968
Functional roles for the GerE-family carboxyl-terminal domains of nitrate response regulators NarL and NarP of Escherichia coli K-12. PMID:20634237
A new client for 14-3-3 proteins: GmMYB176, an R1 MYB transcription factor. PMID:20622511
Identifying and seeing beyond multiple sequence alignment errors using intra-molecular protein covariation. PMID:20596526
Knowledge-based annotation of small molecule binding sites in proteins. PMID:20594344
Depressed biofilm production in Bacillus amyloliquefaciens C06 causes γ-polyglutamic acid (γ-PGA) overproduction. PMID:20593182
A phylogenetic survey of myotubularin genes of eukaryotes: distribution, protein structure, evolution, and gene expression. PMID:20576132
A functional calcium-transporting ATPase encoded by chlorella viruses. PMID:20573858
Recombineering using RecTE from Pseudomonas syringae. PMID:20543050
Identification of novel pathogenicity loci in Clostridium perfringens strains that cause avian necrotic enteritis. PMID:20532244
Savicalin, a lipocalin from hemocytes of the soft tick, Ornithodoros savignyi. PMID:20512614
Plastidial thioredoxin z interacts with two fructokinase-like proteins in a thiol-dependent manner: evidence for an essential role in chloroplast development in Arabidopsis and Nicotiana benthamiana. PMID:20511297
The complete plastid genomes of the two 'dinotoms' Durinskia baltica and Kryptoperidinium foliaceum. PMID:20502706
A novel predicted bromodomain-related protein affects coordination between meiosis and spermiogenesis in Drosophila and is required for male meiotic cytokinesis. PMID:20491580
Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPase. PMID:20472544
Phantom, a new subclass of Mutator DNA transposons found in insect viruses and widely distributed in animals. PMID:20457878
Maltose and maltodextrin utilization by Listeria monocytogenes depend on an inducible ABC transporter which is repressed by glucose. PMID:20436965
Species-specific type II restriction-modification system of Xylella fastidiosa temecula1. PMID:20418439
FRIGIDA and related proteins have a conserved central domain and family specific N- and C- terminal regions that are functionally important. PMID:20405310
The Rut pathway for pyrimidine degradation: novel chemistry and toxicity problems. PMID:20400551
Interchangeable domains in the Kdo transferases of Escherichia coli and Haemophilus influenzae. PMID:20394418
The onconeural antigen cdr2 is a novel APC/C target that acts in mitosis to regulate c-myc target genes in mammalian tumor cells. PMID:20383333
Functional states of homooligomers: insights from the evolution of glycosyltransferases. PMID:20381499
The evolution and functional repertoire of translation proteins following the origin of life. PMID:20377891
Putative storage root specific promoters from cassava and yam: cloning and evaluation in transgenic carrots as a model system. PMID:20369359
Identification of an autoantigen demonstrates a link between interstitial lung disease and a defect in central tolerance. PMID:20368189
Genomic organization of duplicated short wave-sensitive and long wave-sensitive opsin genes in the green swordtail, Xiphophorus helleri. PMID:20353595
Characterization of anthocyanic vacuolar inclusions in Vitis vinifera L. cell suspension cultures. PMID:20238125
A genetic determinant in Streptococcus gordonii Challis encodes a peptide with activity similar to that of enterococcal sex pheromone cAM373, which facilitates intergeneric DNA transfer. PMID:20233933
Cloning and characterization of a novel gene that encodes (S)-beta-bisabolene synthase from ginger, Zingiber officinale. PMID:20229191
A helitron-like transposon superfamily from lepidoptera disrupts (GAAA)(n) microsatellites and is responsible for flanking sequence similarity within a microsatellite family. PMID:20217059
The Puf family of RNA-binding proteins in plants: phylogeny, structural modeling, activity and subcellular localization. PMID:20214804
The novel endosomal membrane protein Ema interacts with the class C Vps-HOPS complex to promote endosomal maturation. PMID:20194640
Identification of a dehydrogenase required for lactose metabolism in Caulobacter crescentus. PMID:20190087
Phylogenetic analysis of the MS4A and TMEM176 gene families. PMID:20186339
Multimethodological approach to identification of glycoproteins from the proteome of Francisella tularensis, an intracellular microorganism. PMID:20175567
Practical application of bioinformatics by the multidisciplinary VIZIER consortium. PMID:20153379
UpaH is a newly identified autotransporter protein that contributes to biofilm formation and bladder colonization by uropathogenic Escherichia coli CFT073. PMID:20145097
Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion. PMID:20137072
Chylomicronemia with low postheparin lipoprotein lipase levels in the setting of GPIHBP1 defects. PMID:20124439
FYCO1 is a Rab7 effector that binds to LC3 and PI3P to mediate microtubule plus end-directed vesicle transport. PMID:20100911
Determination and analysis of the full-length chicken parvovirus genome. PMID:20097398
Early evolution of the LIM homeobox gene family. PMID:20082688
Biodegradation of 5-nitroanthranilic acid by Bradyrhizobium sp. strain JS329. PMID:20081004
A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI). PMID:20071747
Integrating prokaryotes and eukaryotes: DNA transposases in light of structure. PMID:20067338
Caenorhabditis elegans N-glycan core beta-galactoside confers sensitivity towards nematotoxic fungal galectin CGL2. PMID:20062796
Sperm and oocyte communication mechanisms controlling C. elegans fertility. PMID:20034089
TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1. PMID:20017921
Francisella tularensis T-cell antigen identification using humanized HLA-DR4 transgenic mice. PMID:20016043
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. PMID:20007369
An alpha-amylase is a novel receptor for Bacillus thuringiensis ssp. israelensis Cry4Ba and Cry11Aa toxins in the malaria vector mosquito Anopheles albimanus (Diptera: Culicidae). PMID:20002140
Identification of the Schistosoma mansoni TNF-alpha receptor gene and the effect of human TNF-alpha on the parasite gene expression profile. PMID:19956564
Roles of Pichia pastoris Uvrag in vacuolar protein sorting and the phosphatidylinositol 3-kinase complex in phagophore elongation in autophagy pathways. PMID:19946209
An overview of the PubChem BioAssay resource. PMID:19933261
Subcellular localization of marine bacterial alkaline phosphatases. PMID:19926862
Database resources of the National Center for Biotechnology Information. PMID:19910364
MetaBioME: a database to explore commercially useful enzymes in metagenomic datasets. PMID:19906710
Nme protein family evolutionary history, a vertebrate perspective. PMID:19852809
Next generation sequence analysis for mitochondrial disorders. PMID:19852779
ProPhylER: a curated online resource for protein function and structure based on evolutionary constraint analyses. PMID:19846609
A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions. PMID:19844580
Inferred Biomolecular Interaction Server--a web server to analyze and predict protein interacting partners and binding sites. PMID:19843613
Significant speedup of database searches with HMMs by search space reduction with PSSM family models. PMID:19828575
The repertoire of heterotrimeric G proteins and RGS proteins in Ciona intestinalis. PMID:19806206
Evolving a polymerase for hydrophobic base analogues. PMID:19778048
Biochemical and genomic analysis of the denitrification pathway within the genus Neisseria. PMID:19762442
Quaranfil, Johnston Atoll, and Lake Chad viruses are novel members of the family Orthomyxoviridae. PMID:19726499
KlAft, the Kluyveromyces lactis ortholog of Aft1 and Aft2, mediates activation of iron-responsive transcription through the PuCACCC Aft-type sequence. PMID:19581449
In silico analysis of the cyclophilin repertoire of apicomplexan parasites. PMID:19555495
Carboxylic ester hydrolases from hyperthermophiles. PMID:19544040
An expression screen for RhoGEF genes involved in C. elegans gonadogenesis. PMID:19540360
Positively selected disease response orthologous gene sets in the cereals identified using Sorghum bicolor L. Moench expression profiles and comparative genomics. PMID:19506000
CORAL: aligning conserved core regions across domain families. PMID:19470584
The Rho GTPase inactivation domain in Vibrio cholerae MARTX toxin has a circularly permuted papain-like thiol protease fold. PMID:19434753
webPRC: the Profile Comparer for alignment-based searching of public domain databases. PMID:19420063
CPDadh: a new peptidase family homologous to the cysteine protease domain in bacterial MARTX toxins. PMID:19309740
CDD/SPARCLE: the conserved domain database in 2020 PubMed citations: 509.

509 articles citing: CDD/SPARCLE: the conserved domain database in 2020

Genome-Wide Analysis of Multidrug and Toxic Compound Extruction Transporters in Grape. PMID:35909729
Genome-wide identification and expression pattern analysis of lipoxygenase gene family in turnip (Brassica rapa L. subsp. rapa). PMID:35898937
Novel Findings in Teleost TRAF4, a Protein Acts as an Enhancer in TRIF and TRAF6 Mediated Antiviral and Inflammatory Signaling. PMID:35898509
Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory. PMID:35893685
Gb_ANR-47 Enhances the Resistance of Gossypium barbadense to Fusarium oxysporum f. sp. vasinfectum (FOV) by Regulating the Content of Proanthocyanidins. PMID:35893607
Growing Maize Root: Lectins Involved in Consecutive Stages of Cell Development. PMID:35890433
Understanding the Role of Nitronate Monooxygenases in Virulence of the Human Fungal Pathogen Aspergillus fumigatus. PMID:35887491
The Single-Stranded DNA-Binding Gene Whirly (Why1) with a Strong Pathogen-Induced Promoter from Vitis pseudoreticulata Enhances Resistance to Phytophthora capsici. PMID:35887401
Molecular Characterization of a DNA Polymerase from Thermus thermophilus MAT72 Phage vB_Tt72: A Novel Type-A Family Enzyme with Strong Proofreading Activity. PMID:35887293
Genome-Wide Classification and Evolutionary Analysis Reveal Diverged Patterns of Chalcone Isomerase in Plants. PMID:35883518
Pan-phylum In Silico Analyses of Nematode Endocannabinoid Signalling Systems Highlight Novel Opportunities for Parasite Drug Target Discovery. PMID:35846343
Three new mycoviruses identified in the apple replant disease (ARD)-associated fungus Rugonectria rugulosa. PMID:35841525
Antioxidant Mechanism of Lactiplantibacillus plantarum KM1 Under H2O2 Stress by Proteomics Analysis. PMID:35832808
PclR is a transcriptional activator of the gene that encodes the pneumococcal collagen-like protein PclA. PMID:35821046
Network and Evolutionary Analysis Reveals Candidate Genes of Membrane Trafficking Involved in Maize Seed Development and Immune Response. PMID:35812963
Genetic variation associated with condensate dysregulation in disease. PMID:35809564
Genome-Wide Identification and Structural Characterization of Growth-Regulating Factors (GRFs) in Actinida eriantha and Actinidia chinensis. PMID:35807582
Draft Genome of Tanacetum Coccineum: Genomic Comparison of Closely Related Tanacetum-Family Plants. PMID:35806039
Structure-Functional Characteristics of the Svx Protein-The Virulence Factor of the Phytopathogenic Bacterium Pectobacterium atrosepticum. PMID:35805920
R2R3-MYBs in Durum Wheat: Genome-Wide Identification, Poaceae-Specific Clusters, Expression, and Regulatory Dynamics Under Abiotic Stresses. PMID:35795353
Genome-Wide Comprehensive Survey of the Subtilisin-Like Proteases Gene Family Associated With Rice Caryopsis Development. PMID:35795345
Genome-wide identification and functional analysis of class III peroxidases in Gossypium hirsutum. PMID:35795174
Biochemical characterization and peptide mass fingerprinting of two glutathione transferases from Biomphalaria alexandrina snails (Gastropoda: Planorbidae). PMID:35792934
The XTH Gene Family in Schima superba: Genome-Wide Identification, Expression Profiles, and Functional Interaction Network Analysis. PMID:35783982
The coral pathogen Vibrio coralliilyticus kills non-pathogenic holobiont competitors by triggering prophage induction. PMID:35773344
Functional Micropeptides Encoded by Long Non-Coding RNAs: A Comprehensive Review. PMID:35769907
DIP2 is a unique regulator of diacylglycerol lipid homeostasis in eukaryotes. PMID:35766356
The heterologous expression of conserved Glycine max (soybean) mitogen activated protein kinase 3 (MAPK3) paralogs suppresses Meloidogyne incognita parasitism in Gossypium hirsutum (upland cotton). PMID:35763120
A closed Candidatus Odinarchaeum chromosome exposes Asgard archaeal viruses. PMID:35760836
Simulating domain architecture evolution. PMID:35758772
Getting Outside the Cell: Versatile Holin Strategies Used by Distinct Phages to Leave Their Bacillus thuringiensis Host. PMID:35758660
First Evidence of Past and Present Interactions between Viruses and the Black Soldier Fly, Hermetia illucens. PMID:35746744
Genomic and Biological Profile of a Novel Bacteriophage, Vibrio phage Virtus, Which Improves Survival of Sparus aurata Larvae Challenged with Vibrio harveyi. PMID:35745484
Genome-Wide Identification of Switchgrass Laccases Involved in Lignin Biosynthesis and Heavy-Metal Responses. PMID:35742972
Transcriptome-Guided Identification of Pectin Methyl-Esterase-Related Enzymes and Novel Molecular Processes Effectuating the Hard-to-Cook Defect in Common Bean (Phaseolus vulgaris L.). PMID:35741889
An Aux/IAA Family Member, RhIAA14, Involved in Ethylene-Inhibited Petal Expansion in Rose (Rosa hybrida). PMID:35741802
Genome-Wide Identification of m6A Writers, Erasers and Readers in Poplar 84K. PMID:35741780
Sticking Together an Updated Model for Temporary Adhesion. PMID:35736161
Systematic overexpression of genes encoded by mycobacteriophage Waterfoul reveals novel inhibitors of mycobacterial growth. PMID:35727726
New Insights into Evolution of the ABC Transporter Family in Mesostigma viride, a Unicellular Charophyte Algae. PMID:35723370
Characterization of Stenotrophomonas maltophilia phage AXL1 as a member of the genus Pamexvirus encoding resistance to trimethoprim-sulfamethoxazole. PMID:35717537
Genome-wide association study and selection for field resistance to cassava root rot disease and productive traits. PMID:35709238
A Comprehensive Identification and Expression Analysis of VQ Motif-Containing Proteins in Sugarcane (Saccharum spontaneum L.) under Phytohormone Treatment and Cold Stress. PMID:35683012
Genome-Wide Identification and Analysis of Ariadne Gene Family Reveal Its Genetic Effects on Agronomic Traits of Brassica napus. PMID:35682945
CRISPR/Cas9-mediated targeted mutagenesis of GmTCP19L increasing susceptibility to Phytophthora sojae in soybean. PMID:35679334
Complete Genome Sequence of Levilactobacillus brevis Bacteriophage ENFP1. PMID:35678578
A glimpse into the past: phylogenesis and protein domain analysis of the group XIV of C-type lectins in vertebrates. PMID:35659564
Loss of PPR protein Ppr2 induces ferroptosis-like cell death in Schizosaccharomyces pombe. PMID:35657410
The hexokinase Gene Family in Cotton: Genome-Wide Characterization and Bioinformatics Analysis. PMID:35651774
Co-component signal transduction systems: Fast-evolving virulence regulation cassettes discovered in enteric bacteria. PMID:35648808
Comparative genomics of the Western Hemisphere soft tick-borne relapsing fever borreliae highlights extensive plasmid diversity. PMID:35641918
Substantiation of propitious "Enzybiotic" from two novel bacteriophages isolated from a wastewater treatment plant in Qatar. PMID:35641576
Conservation and Evolution of the Sporulation Gene Set in Diverse Members of the Firmicutes. PMID:35638784
The Isolation and Characterization of a Broad Host Range Bcep22-like Podovirus JC1. PMID:35632679
Lifestyles Shape the Cytochrome P450 Repertoire of the Bacterial Phylum Proteobacteria. PMID:35628630
Ancient Origins of Cytoskeletal Crosstalk: Spectraplakin-like Proteins Precede the Emergence of Cortical Microtubule Stabilization Complexes as Crosslinkers. PMID:35628404
Genome-Wide Identification and Transcriptional Expression Profiles of PP2C in the Barley (Hordeum vulgare L.) Pan-Genome. PMID:35627219
Computational Saturation Mutagenesis to Investigate the Effects of Neurexin-1 Mutations on AlphaFold Structure. PMID:35627176
Closing the Gap: Horizontal Transfer of Mariner Transposons between Rhus Gall Aphids and Other Insects. PMID:35625459
Computational Design of Inhibitors Targeting the Catalytic β Subunit of Escherichia coli FOF1-ATP Synthase. PMID:35625201
Genome-Wide Investigation of the PtrCHLP Family Reveals That PtrCHLP3 Actively Mediates Poplar Growth and Development by Regulating Photosynthesis. PMID:35620683
GNAT toxins evolve toward narrow tRNA target specificities. PMID:35609997
Reduced subgenomic RNA expression is a molecular indicator of asymptomatic SARS-CoV-2 infection. PMID:35602196
Defining characteristics and conservation of poorly annotated genes in Caenorhabditis elegans using WormCat 2.0. PMID:35587742
Genome-wide identification and characterization of superoxide dismutases in four oyster species reveals functional differentiation in response to biotic and abiotic stress. PMID:35585505
Complete Genome Sequence of Tea Plant Necrotic Ring Blotch Virus Detected from a Tea Plant in Japan. PMID:35583349
Enhanced Degradation of Juvenile Hormone Promotes Reproductive Diapause in the Predatory Ladybeetle Coccinella Septempunctata. PMID:35574499
Identification and genome characterization of novel parechovirus sequences from Hipposideros armiger in China. PMID:35570277
Genome-Wide Characterization of DGATs and Their Expression Diversity Analysis in Response to Abiotic Stresses in Brassica napus. PMID:35567157
Comprehensive Analysis of the Structure and Function of Peptide:N-Glycanase 1 and Relationship with Congenital Disorder of Deglycosylation. PMID:35565658
Contrasting Health Effects of Bacteroidetes and Firmicutes Lies in Their Genomes: Analysis of P450s, Ferredoxins, and Secondary Metabolite Clusters. PMID:35563448
Identification, In Silico Characterization, and Differential Expression Profiles of Carotenoid, Xanthophyll, Apocarotenoid Biosynthetic Pathways Genes, and Analysis of Carotenoid and Xanthophyll Accumulation in Heracleum moellendorffii Hance. PMID:35563233
Profiling of Transcriptome-Wide N6-Methyladenosine (m6A) Modifications and Identifying m6A Associated Regulation in Sperm Tail Formation in Anopheles sinensis. PMID:35563020
Reconstruction of full-length LINE-1 progenitors from ancestral genomes. PMID:35552404
Genome-wide characterization of the TALE homeodomain family and the KNOX-BLH interaction network in tomato. PMID:35543849
Virus-Host Interactions and Genetic Diversity of Antarctic Sea Ice Bacteriophages. PMID:35532161
Novel Viral DNA Polymerases From Metagenomes Suggest Genomic Sources of Strand-Displacing Biochemical Phenotypes. PMID:35531281
Fungal communities represent the majority of root-specific transcripts in the transcriptomes of Agave plants grown in semiarid regions. PMID:35529479
Understanding and Manipulating Assembly Line Biosynthesis by Heterologous Expression in Streptomyces. PMID:35524053
Metatranscriptomic Assessment of the Microbial Community Associated With the Flavescence dorée Phytoplasma Insect Vector Scaphoideus titanus. PMID:35516423
Genome-wide Identification and Characterization of the GRAS Transcription Factors in Garlic (Allium sativum L.). PMID:35498719
UPIMAPI, reCOGnizer and KEGGCharter: Bioinformatics tools for functional annotation and visualization of (meta)-omics datasets. PMID:35495109
Methods for the Cost-Effective Production of Bacteria-Derived Double-Stranded RNA for in vitro Knockdown Studies. PMID:35492592
Genome-Wide Analysis of the Protein Phosphatase 2C Genes in Tomato. PMID:35456410
Research Status of the Orphan G Protein Coupled Receptor 158 and Future Perspectives. PMID:35456013
Genome-Wide Identification of Cotton (Gossypium spp.) Trehalose-6-Phosphate Phosphatase (TPP) Gene Family Members and the Role of GhTPP22 in the Response to Drought Stress. PMID:35448808
Integration of In Silico and In Vitro Analysis of Gliotoxin Production Reveals a Narrow Range of Producing Fungal Species. PMID:35448592
The Rad9-Rad1-Hus1 DNA repair clamp is found in Microsporidia. PMID:35439302
THOR's Hammer: the Antibiotic Koreenceine Drives Gene Expression in a Model Microbial Community. PMID:35435700
Streptococcus pneumoniae Strains Isolated From a Single Pediatric Patient Display Distinct Phenotypes. PMID:35433506
A de Novo ZMIZ1 Pathogenic Variant for Neurodevelopmental Disorder With Dysmorphic Facies and Distal Skeletal Anomalies. PMID:35432459
Scallop IKK1 Responds to Bacterial and Virus-Related Pathogen Stimulation and Interacts With MyD88 Adaptor of Toll-Like Receptor Pathway Signaling. PMID:35422814
Evolutionarily conserved properties of CLCA proteins 1, 3 and 4, as revealed by phylogenetic and biochemical studies in avian homologues. PMID:35417490
Integrative Analyses of Antler Cartilage Transcriptome and Proteome of Gansu Red Deer (Cervus elaphus kansuensis) at Different Growth Stages. PMID:35405922
Hypothetical protein predicted to be tumor suppressor: a protein functional analysis. PMID:35399005
Structural and functional characterization of a hypothetical protein in the RD7 region in clinical isolates of Mycobacterium tuberculosis - an in silico approach to candidate vaccines. PMID:35394551
The biosynthetic origin of ribofuranose in bacterial polysaccharides. PMID:35393575
Evolution and Genetic Diversity of the Retroviral Envelope in Anamniotes. PMID:35389232
Reassembling a cannon in the DNA defense arsenal: Genetics of StySA, a BREX phage exclusion system in Salmonella lab strains. PMID:35377874
Mechanisms and potential immune tradeoffs of accelerated coral growth induced by microfragmentation. PMID:35368334
Molecular characterization of a novel victorivirus infecting Corynespora cassiicola. PMID:35366710
Investigating the Functional Role of Hypothetical Proteins From an Antarctic Bacterium Pseudomonas sp. Lz4W: Emphasis on Identifying Proteins Involved in Cold Adaptation. PMID:35360867
Genome-Wide Identification, Evolution and Expression Analysis of the Glutathione S-Transferase Supergene Family in Euphorbiaceae. PMID:35360301
Cyclophilin anaCyp40 regulates photosystem assembly and phycobilisome association in a cyanobacterium. PMID:35354803
In silico analysis of nitrilase-3 protein from Corynebacterium glutamicum for bioremediation of nitrile herbicides. PMID:35348933
Genome sequencing of Pseudomonas aeruginosa strain M2 illuminates traits of an opportunistic pathogen of burn wounds. PMID:35348684
Unusual (2R,6R)-bicyclo[3.1.1]heptane ring construction in fungal α-trans-bergamotene biosynthesis. PMID:35345459
Genome-Wide Identification of YABBY Gene Family in Cucurbitaceae and Expression Analysis in Cucumber (Cucumis sativus L.). PMID:35328021
Thiol Reductases in Deinococcus Bacteria and Roles in Stress Tolerance. PMID:35326211
In Silico Study of Superoxide Dismutase Gene Family in Potato and Effects of Elevated Temperature and Salicylic Acid on Gene Expression. PMID:35326138
In Silico Methods for the Identification of Viral-Derived Small Interfering RNAs (vsiRNAs) and Their Application in Plant Genomics. PMID:35325416
A Novel Alginate Lyase: Identification, Characterization, and Potential Application in Alginate Trisaccharide Preparation. PMID:35323458
Inner nuclear membrane protein TMEM201 maintains endothelial cell migration and angiogenesis by interacting with the LINC complex. PMID:35311970
Computational Tools for the Analysis of Uncultivated Phage Genomes. PMID:35311574
Functional analysis of ARF1 from Cymbidium goeringii in IAA response during leaf development. PMID:35291484
A fungal effector suppresses the nuclear export of AGO1-miRNA complex to promote infection in plants. PMID:35290117
Independent Size Expansions and Intron Proliferation in Red Algal Plastid and Mitochondrial Genomes. PMID:35289373
Deciphering the Potential Coding of Human Cytomegalovirus: New Predicted Transmembrane Proteome. PMID:35269907
The Cell Membrane of a Novel Rhizobium phaseoli Strain Is the Crucial Target for Aluminium Toxicity and Tolerance. PMID:35269493
Quantifying and Cataloguing Unknown Sequences within Human Microbiomes. PMID:35258340
The impacts of allopolyploidization on Methyl-CpG-Binding Domain (MBD) gene family in Brassica napus. PMID:35255818
Genome-Wide Characterization of Serine/Arginine-Rich Gene Family and Its Genetic Effects on Agronomic Traits of Brassica napus. PMID:35251101
RNA Virus Diversity in Birds and Small Mammals From Qinghai-Tibet Plateau of China. PMID:35250920
Genomic Analysis of Molecular Bacterial Mechanisms of Resistance to Phage Infection. PMID:35250902
Characterization of pectin methylesterase gene family and its possible role in juice sac granulation in navel orange (Citrus sinensis Osbeck). PMID:35249536
Maelstrom functions in the production of Siwi-piRISC capable of regulating transposons in Bombyx germ cells. PMID:35243263
TransposonUltimate: software for transposon classification, annotation and detection. PMID:35234904
Separable roles for RNAi in regulation of transposable elements and viability in the fission yeast Schizosaccharomyces japonicus. PMID:35226668
Genome-Wide Analysis of Serine Hydroxymethyltransferase Genes in Triticeae Species Reveals That TaSHMT3A-1 Regulates Fusarium Head Blight Resistance in Wheat. PMID:35222497
Identification of Type VI Secretion Systems Effector Proteins That Contribute to Interbacterial Competition in Salmonella Dublin. PMID:35222335
Genome-Wide Comparative Analysis of the R2R3-MYB Gene Family in Five Solanaceae Species and Identification of Members Regulating Carotenoid Biosynthesis in Wolfberry. PMID:35216373
Viruses Infecting Greenhood Orchids (Pterostylidinae) in Eastern Australia. PMID:35215958
Characterization of a Novel Double-Stranded RNA Virus from Phytophthora pluvialis in New Zealand. PMID:35215841
Novel nitrite reductase domain structure suggests a chimeric denitrification repertoire in the phylum Chloroflexi. PMID:35212484
Are There Hidden Genes in DNA/RNA Vaccines? PMID:35211117
Novel Phage Lysin Abp013 against Acinetobacter baumannii. PMID:35203772
Novel RAB3GAP1 Mutation in the First Tunisian Family With Warburg Micro Syndrome. PMID:35196747
Purification, biochemical characterization, and molecular cloning of cellulase from Bacillus licheniformis strain Z9 isolated from soil. PMID:35192092
Evidence of episodic positive selection in Corynebacterium diphtheriae complex of species and its implementations in identification of drug and vaccine targets. PMID:35190783
Grapevine virome and production of healthy plants by somatic embryogenesis. PMID:35182024
Active anaerobic methane oxidation and sulfur disproportionation in the deep terrestrial subsurface. PMID:35173296
The origin and evolution of a plant resistosome. PMID:35166827
Soil pH Filters the Association Patterns of Aluminum-Tolerant Microorganisms in Rice Paddies. PMID:35166564
Genome Informatics and Machine Learning-Based Identification of Antimicrobial Resistance-Encoding Features and Virulence Attributes in Escherichia coli Genomes Representing Globally Prevalent Lineages, Including High-Risk Clonal Complexes. PMID:35164570
Intraspecific Diversity of Microbial Anti-Inflammatory Molecule (MAM) from Faecalibacterium prausnitzii. PMID:35163630
Are Cell Junctions Implicated in the Regulation of Vitellogenin Uptake? Insights from an RNAseq-Based Study in Eel, Anguilla australis. PMID:35159359
Physical ARTEMIS:DNA-PKcs interaction is necessary for V(D)J recombination. PMID:35150269
Molecular cloning, characterization and expression analysis of two 12-oxophytodienoate reductases (NtOPR1 and NtOPR2) from Nicotiana tabacum. PMID:35149935
Comparative Transcriptome Analysis in Taraxacum koksaghyz to Identify Genes that Determine Root Volume and Root Length. PMID:35140739
A truncated CC-NB-ARC gene TaRPP13L1-3D positively regulates powdery mildew resistance in wheat via the RanGAP-WPP complex-mediated nucleocytoplasmic shuttle. PMID:35133503
A CysB regulator positively regulates cysteine synthesis, expression of type III secretion system genes, and pathogenicity in Ralstonia solanacearum. PMID:35122373
Convergent molecular evolution of phosphoenolpyruvate carboxylase gene family in C4 and crassulacean acid metabolism plants. PMID:35116203
Neuropeptidergic regulation of compulsive ethanol seeking in C. elegans. PMID:35110557
Functional Analysis of the Expanded Phosphodiesterase Gene Family in Toxoplasma gondii Tachyzoites. PMID:35107337
Crystal structure and initial characterization of a novel archaeal-like Holliday junction-resolving enzyme from Thermus thermophilus phage Tth15-6. PMID:35102887
Evidence for Horizontal and Vertical Transmission of Mtr-Mediated Extracellular Electron Transfer among the Bacteria. PMID:35100867
Novel Viral Communities Potentially Assisting in Carbon, Nitrogen, and Sulfur Metabolism in the Upper Slope Sediments of Mariana Trench. PMID:35089086
Structures and function of a tailoring oxidase in complex with a nonribosomal peptide synthetase module. PMID:35087027
Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation. PMID:35083439
Corynebacterium Species Inhibit Streptococcus pneumoniae Colonization and Infection of the Mouse Airway. PMID:35082772
Identification and analysis of iron transporters from the fission yeast Schizosaccharomyces pombe. PMID:35079912
Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom. PMID:35078938
A simple guide to de novo transcriptome assembly and annotation. PMID:35076693
Genome-wide survey of the dehydrin genes in bread wheat (Triticum aestivum L.) and its relatives: identification, evolution and expression profiling under various abiotic stresses. PMID:35065618
Prophage-encoded gene VpaChn25_0734 amplifies ecological persistence of Vibrio parahaemolyticus CHN25. PMID:35064802
Molecular structures and functional exploration of NDA family genes respond tolerant to alkaline stress in Gossypium hirsutum L. PMID:35063045
Comparative Analysis of Three Trypanosomatid Catalases of Different Origin. PMID:35052550
DARTS: An Algorithm for Domain-Associated Retrotransposon Search in Genome Assemblies. PMID:35052350
Actinoporin-like Proteins Are Widely Distributed in the Phylum Porifera. PMID:35049929
An Integrative Sialomic Analysis Reveals Molecules From Triatoma sordida (Hemiptera: Reduviidae). PMID:35047420
Identification and expression analysis of the sucrose synthase gene family in pomegranate (Punica granatum L.). PMID:35047243
Characterization of Cyclophilin from Thaumarchaeota Nitrosopumilus maritimus: Implications on the Diversity of Chaperone-like Activity in the Archaeal Domain. PMID:35036680
A DEK domain-containing protein GhDEK2D mediated Gossypium hirsutum enhanced resistance to Verticillium dahliae. PMID:35034577
Unique mobile elements and scalable gene flow at the prokaryote-eukaryote boundary revealed by circularized Asgard archaea genomes. PMID:35027677
Genome wide analysis of DWARF27 genes in soybean and functional characterization of GmD27c reveals eminent role of strigolactones in rhizobia interaction and nodulation in Glycine max. PMID:35025033
Genome-wide identification and expression profiling analysis of Wnt family genes affecting adipocyte differentiation in cattle. PMID:35017603
Specificity and genetic polymorphism in the Vfm quorum sensing system of plant pathogenic bacteria of the genus Dickeya. PMID:35014170
Linkage mapping and QTL analysis of growth traits in Rhopilema esculentum. PMID:35013486
Two genomic regions of a sodium azide induced rice mutant confer broad-spectrum and durable resistance to blast disease. PMID:35006368
Genome-wide identification, evolution, and expression analysis of the NPR1-like gene family in pears. PMID:35003927
Evolution and expression of LEAFY genes in ferns and lycophytes. PMID:34998428
Characterization of non-specific lipid transfer protein (nsLtp) gene families in the Brassica napus pangenome reveals abundance variation. PMID:34996379
Saline lakes on the Qinghai-Tibet Plateau harbor unique viral assemblages mediating microbial environmental adaption. PMID:34988389
Genome-wide identification of CCT genes in wheat (Triticum aestivum L.) and their expression analysis during vernalization. PMID:34986172
Characterization of a novel broad-spectrum endolysin PlyD4 encoded by a highly conserved prophage found in Aeromonas hydrophila ST251 strains. PMID:34985567
Specific Strains of Honeybee Gut Lactobacillus Stimulate Host Immune System to Protect against Pathogenic Hafnia alvei. PMID:34985299
Calcium-Dependent Protein Kinase GhCDPK28 Was Dentified and Involved in Verticillium Wilt Resistance in Cotton. PMID:34975954
Restrained expression of canine glucocorticoid receptor splice variants α and P prognosticates fatal disease outcome in SIRS. PMID:34969952
Not All That Glitters Is Gold: The Paradox of CO-dependent Hydrogenogenesis in Parageobacillus thermoglucosidasius. PMID:34956151
Characterization of SLC34A2 as a Potential Prognostic Marker of Oncological Diseases. PMID:34944522
High natural PHA production from acetate in Cobetia sp. MC34 and Cobetia marina DSM 4741T and in silico analyses of the genus specific PhaC2 polymerase variant. PMID:34930259
Sequence Conservation, Domain Architectures, and Phylogenetic Distribution of the HD-GYP Type c-di-GMP Phosphodiesterases. PMID:34928179
Seminal fluid proteins induce transcriptome changes in the Aedes aegypti female lower reproductive tract. PMID:34906087
Identification and classification of reverse transcriptases in bacterial genomes and metagenomes. PMID:34904653
Endosperm Evolution by Duplicated and Neofunctionalized Type I MADS-Box Transcription Factors. PMID:34897514
Identification of the key functional genes in salt-stress tolerance of Cyanobacterium Phormidium tenue using in silico analysis. PMID:34881166
Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance. PMID:34880890
Cargo Genes of Tn7-Like Transposons Comprise an Enormous Diversity of Defense Systems, Mobile Genetic Elements, and Antibiotic Resistance Genes. PMID:34872347
Streptococcus pneumoniae: a Plethora of Temperate Bacteriophages With a Role in Host Genome Rearrangement. PMID:34869076
Nuclear transport genes recurrently duplicate by means of RNA intermediates in Drosophila but not in other insects. PMID:34863092
Genome-wide characterization of bZIP gene family identifies potential members involved in flavonoids biosynthesis in Ginkgo biloba L. PMID:34862430
A comprehensive in silico investigation into the nsSNPs of Drd2 gene predicts significant functional consequences in dopamine signaling and pharmacotherapy. PMID:34853389
PRGdb 4.0: an updated database dedicated to genes involved in plant disease resistance process. PMID:34850118
Pif1 Helicases and the Evidence for a Prokaryotic Origin of Helitrons. PMID:34850089
Single-nucleus transcriptomes reveal evolutionary and functional properties of cell types in the Drosophila accessory gland. PMID:34849871
New insights about the EptA protein and its correlation with the pmrC gene in polymyxin resistance in Pseudomonas aeruginosa. PMID:34841333
Functional Characterisation of Bile Metagenome: Study of Metagenomic Dark Matter. PMID:34835325
Genome-Wide Identification and Characterization of Soybean GmLOR Gene Family and Expression Analysis in Response to Abiotic Stresses. PMID:34830397
(Un)expected Similarity of the Temporary Adhesive Systems of Marine, Brackish, and Freshwater Flatworms. PMID:34830109
Genetic Variability of the Functional Domains of Chromodomains Helicase DNA-Binding (CHD) Proteins. PMID:34828433
Lipid Transfer Proteins (LTPs)-Structure, Diversity and Roles beyond Antimicrobial Activity. PMID:34827219
A Novel In Silico Benchmarked Pipeline Capable of Complete Protein Analysis: A Possible Tool for Potential Drug Discovery. PMID:34827106
Type IX Secretion System Effectors and Virulence of the Model Flavobacterium columnare Strain MS-FC-4. PMID:34818105
Immune reactivity and host modulatory roles of two novel Haemonchus contortus cathepsin B-like proteases. PMID:34798906
Novel Enzymes From the Red Sea Brine Pools: Current State and Potential. PMID:34777282
Isolation, phenotypic characterization and comparative genomic analysis of 2019SD1, a polyvalent enterobacteria phage. PMID:34772986
In silico analysis and expression profiling of S-domain receptor-like kinases (SD-RLKs) under different abiotic stresses in Arabidopsis thaliana. PMID:34772363
A Novel Spo11 Homologue Functions as a Positive Regulator in Cyst Differentiation in Giardia lamblia. PMID:34769330
Lyophyllin, a Mushroom Protein from the Peptidase M35 Superfamily Is an RNA N-Glycosidase. PMID:34769028
Leveraging machine learning essentiality predictions and chemogenomic interactions to identify antifungal targets. PMID:34764269
Synthaser: a CD-Search enabled Python toolkit for analysing domain architecture of fungal secondary metabolite megasynth(et)ases. PMID:34763725
The transposable element-rich genome of the cereal pest Sitophilus oryzae. PMID:34749730
Assessing the Biodegradation of Vulcanised Rubber Particles by Fungi Using Genetic, Molecular and Surface Analysis. PMID:34733834
The chitinolytic activity of the Curtobacterium sp. isolated from field-grown soybean and analysis of its genome sequence. PMID:34731210
A cluster of atypical resistance genes in soybean confers broad-spectrum antiviral activity. PMID:34730802
Capsicum chinense MYB Transcription Factor Genes: Identification, Expression Analysis, and Their Conservation and Diversification With Other Solanaceae Genomes. PMID:34721453
A Novel Microviridae Phage (CLasMV1) From "Candidatus Liberibacter asiaticus". PMID:34721359
Virtual Screening on Marine Natural Products for Discovering TMPRSS2 Inhibitors. PMID:34712648
Genomic and Transcriptomic Insight of Giant Sclerotium Formation of Wood-Decay Fungi. PMID:34712214
A polyketide synthase gene cluster required for pathogenicity of Pseudocercospora fijiensis on banana. PMID:34705882
Differential expression of transposable elements in the medaka melanoma model. PMID:34705830
Diversification of Ferredoxins across Living Organisms. PMID:34698119
Genome-Wide Identification and Expression Analysis of MADS-Box Family Genes in Litchi (Litchi chinensis Sonn.) and Their Involvement in Floral Sex Determination. PMID:34685951
Genome Study of a Novel Virulent Phage vB_SspS_KASIA and Mu-like Prophages of Shewanella sp. M16 Provides Insights into the Genetic Diversity of the Shewanella Virome. PMID:34681734
FA-nf: A Functional Annotation Pipeline for Proteins from Non-Model Organisms Implemented in Nextflow. PMID:34681040
Identification, Molecular Characterization, and Tissue Expression Profiles of Three Smad Genes from Water Buffalo (Bubalus bubalis). PMID:34680931
In Silico and Cellular Differences Related to the Cell Division Process between the A and B Races of the Colonial Microalga Botryococcus braunii. PMID:34680096
Description of Joint Alterations Observed in a Family Carrying p.Asn453Ser COMP Variant: Clinical Phenotypes, In Silico Prediction of Functional Impact on COMP Protein and Stability, and Review of the Literature. PMID:34680093
Identification of Type II Toxin-Antitoxin Loci in Levilactobacillus brevis. PMID:34664198
Co-evolutionary Signals Identify Burkholderia pseudomallei Survival Strategies in a Hostile Environment. PMID:34662416
A bacterial membrane sculpting protein with BAR domain-like activity. PMID:34643180
Discovery and Validation of Lmj_04_BRCT Domain, a Novel Therapeutic Target: Identification of Candidate Drugs for Leishmaniasis. PMID:34638841
Genome-Wide Analysis of the TCP Transcription Factor Genes in Dendrobium catenatum Lindl. PMID:34638610
Gm364 coordinates MIB2/DLL3/Notch2 to regulate female fertility through AKT activation. PMID:34635817
Gene regulation of adult skeletogenesis in starfish and modifications during gene network co-option. PMID:34635691
Development of ELISA based on Bacillus anthracis capsule biosynthesis protein CapA for naturally acquired antibodies against anthrax. PMID:34634075
Two New M23 Peptidoglycan Hydrolases With Distinct Net Charge. PMID:34630350
Genome-wide identification of the BURP domain-containing genes in Phaseolus vulgaris. PMID:34629769
Manual Annotation Studio (MAS): a collaborative platform for manual functional annotation of viral and microbial genomes. PMID:34627149
Genome-wide investigation and expression profiling of polyphenol oxidase (PPO) family genes uncover likely functions in organ development and stress responses in Populus trichocarpa. PMID:34625025
Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis. PMID:34615886
Identification of ABC transporter G subfamily in white lupin and functional characterization of L.albABGC29 in phosphorus use. PMID:34615466
Metagenomic and Metatranscriptomic Characterization of a Microbial Community That Catalyzes Both Energy-Generating and Energy-Storing Electrode Reactions. PMID:34613754
A plastid two-pore channel essential for inter-organelle communication and growth of Toxoplasma gondii. PMID:34608145
Assessment of intercontinents mutation hotspots and conserved domains within SARS-CoV-2 genome. PMID:34606987
Genome of Ganoderma Species Provides Insights Into the Evolution, Conifers Substrate Utilization, and Terpene Synthesis for Ganoderma tsugae. PMID:34603250
In silico characterization of the GH5-cellulase family from uncultured microorganisms: physicochemical and structural studies. PMID:34591195
t(4;12)(q12;p13) ETV6-rearranged AML without eosinophilia does not involve PDGFRA: relevance for imatinib insensitivity. PMID:34587239
Pan-cancer analysis indicates that MYBL2 is associated with the prognosis and immunotherapy of multiple cancers as an oncogene. PMID:34585645
Deciphering the Dynamics of Signaling Cascades and Virulence Factors of B. cinerea during Tomato Cell Wall Degradation. PMID:34576732
Deletion of the Bcnrps1 Gene Increases the Pathogenicity of Botrytis cinerea and Reduces Its Tolerance to the Exogenous Toxic Substances Spermidine and Pyrimethanil. PMID:34575759
Genome-Wide Identification and Transcriptional Expression Profiles of Transcription Factor WRKY in Common Walnut (Juglans regia L.). PMID:34573426
In Silico Characterization of Calcineurin from Pathogenic Obligate Intracellular Trypanosomatids: Potential New Biological Roles. PMID:34572535
Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19. PMID:34572502
Comparative Genomic Analysis of the DUF34 Protein Family Suggests Role as a Metal Ion Chaperone or Insertase. PMID:34572495
Structural dissection of sequence recognition and catalytic mechanism of human LINE-1 endonuclease. PMID:34554261
The function of twister ribozyme variants in non-LTR retrotransposition in Schistosoma mansoni. PMID:34551436
Genome sequencing of the neotype strain CBS 554.65 reveals the MAT1-2 locus of Aspergillus niger. PMID:34548025
Genome-wide identification, phylogeny, and expression analysis of the bHLH gene family in tobacco (Nicotiana tabacum). PMID:34539114
KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases. PMID:34537014
The GRAS gene family and its roles in seed development in litchi (Litchi chinensis Sonn). PMID:34535087
Identification of BR biosynthesis genes in cotton reveals that GhCPD-3 restores BR biosynthesis and mediates plant growth and development. PMID:34533620
Lactococcus lactis Resistance to Aureocin A53- and Enterocin L50-Like Bacteriocins and Membrane-Targeting Peptide Antibiotics Relies on the YsaCB-KinG-LlrG Four-Component System. PMID:34516250
Novel Lytic Enzyme of Prophage Origin from Clostridium botulinum E3 Strain Alaska E43 with Bactericidal Activity against Clostridial Cells. PMID:34502443
Dual Activity BLEG-1 from Bacillus lehensis G1 Revealed Structural Resemblance to B3 Metallo-β-Lactamase and Glyoxalase II: An Insight into Its Enzyme Promiscuity and Evolutionary Divergence. PMID:34502284
Evolutionary Divergence of the Wsp Signal Transduction Systems in Beta- and Gammaproteobacteria. PMID:34495711
Evolution of Methyltransferase-Like (METTL) Proteins in Metazoa: A Complex Gene Family Involved in Epitranscriptomic Regulation and Other Epigenetic Processes. PMID:34480573
The Evolutionary Dynamics of Repetitive DNA and Its Impact on the Genome Diversification in the Genus Sorghum. PMID:34475879
Genome-Wide Phylogenetic Analysis, Expression Pattern, and Transcriptional Regulatory Network of the Pig C/EBP Gene Family. PMID:34471342
Genome-wide identification, characterization and expression analysis of MATE family genes in apple (Malus × domestica Borkh). PMID:34461821
The dataset of predicted trypsin serine peptidases and their inactive homologs in Tenebrio molitor transcriptomes. PMID:34458527
Characterisation and Distribution of Karaka Ōkahu Purepure Virus-A Novel Emaravirus Likely to Be Endemic to New Zealand. PMID:34452476
The Requirement of Glycoprotein C for Interindividual Spread Is Functionally Conserved within the Alphaherpesvirus Genus (Mardivirus), but Not the Host (Gallid). PMID:34452285
Molecular Characterization, Expression Analysis of Carotenoid, Xanthophyll, Apocarotenoid Pathway Genes, and Carotenoid and Xanthophyll Accumulation in Chelidonium majus L. PMID:34451798
Genome-wide identification and characterization of the Lateral Organ Boundaries Domain (LBD) gene family in polyploid wheat and related species. PMID:34447619
Genome-Wide Identification of the ARF Gene Family and ARF3 Target Genes Regulating Ovary Initiation in Hazel via ChIP Sequencing. PMID:34447403
Unexpected organellar locations of ESCRT machinery in Giardia intestinalis and complex evolutionary dynamics spanning the transition to parasitism in the lineage Fornicata. PMID:34446013
Architecture Insight of Bifidobacterial α-L-Fucosidases. PMID:34445166
The Genome Analysis of the Human Lung-Associated Streptomyces sp. TR1341 Revealed the Presence of Beneficial Genes for Opportunistic Colonization of Human Tissues. PMID:34442631
Bioinformatic Analysis of Two TOR (Target of Rapamycin)-Like Proteins Encoded by Entamoeba histolytica Revealed Structural Similarities with Functional Homologs. PMID:34440318
The Natterin Proteins Diversity: A Review on Phylogeny, Structure, and Immune Function. PMID:34437409
Evolutionary Profile for (Host and Viral) MLKL Indicates Its Activities as a Battlefront for Extensive Counteradaptation. PMID:34436583
A Putative Lignin Copper Oxidase from Trichoderma reesei. PMID:34436182
Ecological Specialization and Evolutionary Reticulation in Extant Hyaenidae. PMID:34426844
Identification of neural progenitor cells and their progeny reveals long distance migration in the developing octopus brain. PMID:34425939
PI3K Plays an Essential Role in Planarian Regeneration and Tissue Maintenance. PMID:34422792
Comparative analysis of stalked and acorn barnacle adhesive proteomes. PMID:34404232
Retrotransposons as pathogenicity factors of the plant pathogenic fungus Botrytis cinerea. PMID:34399815
Evolution of the Insect PPK Gene Family. PMID:34390578
Insertion of Badnaviral DNA in the Late Blight Resistance Gene (R1a) of Brinjal Eggplant (Solanum melongena). PMID:34367211
Genome-Wide Identification and Evolutionary Analysis of Gossypium Tubby-Like Protein (TLP) Gene Family and Expression Analyses During Salt and Drought Stress. PMID:34367198
Predicted Cellular Interactors of the Endogenous Retrovirus-K Integrase Enzyme. PMID:34361946
Genome-wide analysis of HECT E3 ubiquitin ligase gene family in Solanum lycopersicum. PMID:34354159
Target classification in the 14th round of the critical assessment of protein structure prediction (CASP14). PMID:34350630
Evolutionary and Functional Analysis of Coagulase Positivity among the Staphylococci. PMID:34346700
Genotype-Specific Expression and NLR Repertoire Contribute to Phenotypic Resistance Diversity in Plantago lanceolata. PMID:34322142
Structural and Functional Elucidation of IF-3 Protein of Chloroflexus aurantiacus Involved in Protein Biosynthesis: An In Silico Approach. PMID:34307671
Draft Genome of the Mirrorwing Flyingfish (Hirundichthys speculiger). PMID:34306036
Evolution of Toll, Spatzle and MyD88 in insects: the problem of the Diptera bias. PMID:34289811
Improving Mobilization of Foreign DNA into Zymomonas mobilis Strain ZM4 by Removal of Multiple Restriction Systems. PMID:34288704
Genome-Wide Analysis of MADS-Box Genes in Foxtail Millet (Setaria italica L.) and Functional Assessment of the Role of SiMADS51 in the Drought Stress Response. PMID:34262576
The tweety Gene Family: From Embryo to Disease. PMID:34262434
Proteome, Bioinformatic, and Functional Analyses Reveal a Distinct and Conserved Metabolic Pathway for Bile Salt Degradation in the Sphingomonadaceae. PMID:34260303
Expression profiling of the Dof gene family under abiotic stresses in spinach. PMID:34257328
Genome-wide identification of cyclin-dependent kinase (CDK) genes affecting adipocyte differentiation in cattle. PMID:34253191
Molecular fossils illuminate the evolution of retroviruses following a macroevolutionary transition from land to water. PMID:34252162
Genome-Wide Investigation of N6-Methyladenosine Regulatory Genes and Their Roles in Tea (Camellia sinensis) Leaves During Withering Process. PMID:34211493
Respiratory Heme A-Containing Oxidases Originated in the Ancestors of Iron-Oxidizing Bacteria. PMID:34211444
Validation of Reference Genes for Studying Different Abiotic Stresses in Oat (Avena sativa L.) by RT-qPCR. PMID:34206660
Assessment of the Degradation Potential and Genomic Insights towards Phenanthrene by Dietzia psychralcaliphila JI1D. PMID:34205451
Completion of Maize Stripe Virus Genome Sequence and Analysis of Diverse Isolates. PMID:34194416
Mosaic Ends Tagmentation (METa) Assembly for Highly Efficient Construction of Functional Metagenomic Libraries. PMID:34184912
Eukaryotic TYW1 Is a Radical SAM Flavoenzyme. PMID:34184886
Functional Characterization of the Cnidarian Antiviral Immune Response Reveals Ancestral Complexity. PMID:34180999
In silico analysis of glycosyltransferase 2 family genes in duckweed (Spirodela polyrhiza) and its role in salt stress tolerance. PMID:34179502
A computational model for GPCR-ligand interaction prediction. PMID:34171942
Identification of a self-sufficient cytochrome P450 monooxygenase from Cupriavidus pinatubonensis JMP134 involved in 2-hydroxyphenylacetic acid catabolism, via homogentisate pathway. PMID:34156761
Viromes in marine ecosystems reveal remarkable invertebrate RNA virus diversity. PMID:34156600
High-resolution genetic mapping reveals cis-regulatory and copy number variation in loci associated with cytochrome P450-mediated detoxification in a generalist arthropod pest. PMID:34153029
Computational study to discover potent phytochemical inhibitors against drug target, squalene synthase from Leishmania donovani. PMID:34141935
Structural phylogenetic analysis reveals lineage-specific RNA repetitive structural motifs in all coronaviruses and associated variations in SARS-CoV-2. PMID:34141447
Genome-Wide Analysis of the G2-Like Transcription Factor Genes and Their Expression in Different Senescence Stages of Tobacco (Nicotiana tabacum L.). PMID:34135936
Schistosomiasis Drug Discovery in the Era of Automation and Artificial Intelligence. PMID:34135888
Cultivation of a Lytic Double-Stranded RNA Bacteriophage Infecting Microvirgula aerodenitrificans Reveals a Mutualistic Parasitic Lifestyle. PMID:34133887
The spike glycoprotein genes of porcine epidemic diarrhea viruses isolated in China. PMID:34130762
Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments. PMID:34127845
Identification and Expression Analysis of miR160 and Their Target Genes in Cucumber. PMID:34117971
Identification and characterization of andalusicin: N-terminally dimethylated class III lantibiotic from Bacillus thuringiensis sv. andalousiensis. PMID:34113822
Tissue- and stage-specific landscape of the mouse translatome. PMID:34107020
Genome-wide identification of the Capsicum bHLH transcription factor family: discovery of a candidate regulator involved in the regulation of species-specific bioactive metabolites. PMID:34098881
The Vaginal Microbial Signatures of Preterm Birth Delivery in Indian Women. PMID:34094994
SepF is the FtsZ anchor in archaea, with features of an ancestral cell division system. PMID:34088904
Mantis: flexible and consensus-driven genome annotation. PMID:34076241
Ancient Bacterial Class Alphaproteobacteria Cytochrome P450 Monooxygenases Can Be Found in Other Bacterial Species. PMID:34073951
Genomic Analysis of a Novel Phage Infecting the Turkey Pathogen Escherichia coli APEC O78 and Its Endolysin Activity. PMID:34072620
Genome-Wide Characterization of WRKY Transcription Factors Revealed Gene Duplication and Diversification in Populations of Wild to Domesticated Barley. PMID:34069581
Genome-Wide Identification and Analysis of the APETALA2 (AP2) Transcription Factor in Dendrobium officinale. PMID:34069261
Computational Design of Novel Allosteric Inhibitors for Plasmodium falciparum DegP. PMID:34066964
Functional Characterization of the mazEF Toxin-Antitoxin System in the Pathogenic Bacterium Agrobacterium tumefaciens. PMID:34065548
Peters plus syndrome mutations affect the function and stability of human β1,3-glucosyltransferase. PMID:34058199
A Win-Loss Interaction on Fe0 Between Methanogens and Acetogens From a Climate Lake. PMID:34054747
AniProtDB: A Collection of Consistently Generated Metazoan Proteomes for Comparative Genomics Studies. PMID:34048573
RNA interference of an orthologue of Dicer of Meloidogyne incognita alludes to the gene's importance in nematode development. PMID:34045504
Genome-wide identification of the DUF668 gene family in cotton and expression profiling analysis of GhDUF668 in Gossypium hirsutum under adverse stress. PMID:34044774
Genome-wide identification of the tea plant bHLH transcription factor family and discovery of candidate regulators of trichome formation. PMID:34031482
Bioinformatic and Functional Characterization of Hsp70s in Myxococcus xanthus. PMID:34011688
Sesbanimide R, a Novel Cytotoxic Polyketide Produced by Magnetotactic Bacteria. PMID:34006654
Novel mutations of epidermolysis bullosa identified using whole-exome sequencing in Indonesian Javanese patients. PMID:33996353
BACPHLIP: predicting bacteriophage lifestyle from conserved protein domains. PMID:33996289
Widespread distribution of hmf genes in Proteobacteria reveals key enzymes for 5-hydroxymethylfurfural conversion. PMID:33995910
Gene Expression Patterns for Proteins With Lectin Domains in Flax Stem Tissues Are Related to Deposition of Distinct Cell Wall Types. PMID:33995436
Global Genome Mining Reveals the Distribution of Diverse Thioamidated RiPP Biosynthesis Gene Clusters. PMID:33995295
In Silico Characterization of a Hypothetical Protein from Shigella dysenteriae ATCC 12039 Reveals a Pathogenesis-Related Protein of the Type-VI Secretion System. PMID:33994781
DoChaP: the domain change presenter. PMID:33988713
Identification of benzamide inhibitors of histone deacetylase 1 from Babesia and Theileria species via high-throughput virtual screening and molecular dynamics simulations. PMID:33987736
cDNA cloning, expression, and antifungal activity of chitinase from Ficus microcarpa latex: difference in antifungal action of chitinase with and without chitin-binding domain. PMID:33987712
Repurposing potential of posaconazole and grazoprevir as inhibitors of SARS-CoV-2 helicase. PMID:33986405
Evolution of kaiA, a key circadian gene of cyanobacteria. PMID:33976298
Novel Mycoviruses Discovered in the Mycovirome of a Necrotrophic Fungus. PMID:33975945
A New Pathway for Forming Acetate and Synthesizing ATP during Fermentation in Bacteria. PMID:33931420
Microbial and Genetic Resources for Cobalamin (Vitamin B12) Biosynthesis: From Ecosystems to Industrial Biotechnology. PMID:33926061
Genome Sequence Analysis of the Oleaginous Yeast, Rhodotorula diobovata, and Comparison of the Carotenogenic and Oleaginous Pathway Genes and Gene Products with Other Oleaginous Yeasts. PMID:33924147
Genome-Wide Analysis of the RAV Transcription Factor Genes in Rice Reveals Their Response Patterns to Hormones and Virus Infection. PMID:33922971
Identification and Characterization of a Novel Genomic Island Harboring Cadmium and Arsenic Resistance Genes in Listeria welshimeri. PMID:33920493
Molecular Characteristics of Fat Body Protein 1 in the Oriental Fruit Fly, Bactrocera dorsalis. PMID:33918351
Multiple Infiltration and Cross-Species Transmission of Foamy Viruses across the Paleozoic to the Cenozoic Era. PMID:33910951
Physiologists turned Geneticists: Identifying transcripts and genes for neuronal function in the Marbled Crayfish, Procambarus virginalis. PMID:33880091
Unearthing LTR Retrotransposon gag Genes Co-opted in the Deep Evolution of Eukaryotes. PMID:33871607
RNA kinase CLP1/Cbc regulates meiosis initiation in spermatogenesis. PMID:33864361
Characterization of the first vaginal Lactobacillus crispatus genomes isolated in Brazil. PMID:33854845
The Diadenylate Cyclase CdaA Is Critical for Borrelia turicatae Virulence and Physiology. PMID:33846120
Common low complexity regions for SARS-CoV-2 and human proteomes as potential multidirectional risk factor in vaccine development. PMID:33832440
Lysosome dysfunction as a cause of neurodegenerative diseases: Lessons from frontotemporal dementia and amyotrophic lateral sclerosis. PMID:33812000
Bioinformatic Analysis of Genome-Predicted Bat Cathelicidins. PMID:33806967
Cyanide Hydratase Modification Using Computational Design and Docking Analysis for Improved Binding Affinity in Cyanide Detoxification. PMID:33806828
In-Situ Metatranscriptomic Analyses Reveal the Metabolic Flexibility of the Thermophilic Anoxygenic Photosynthetic Bacterium Chloroflexus aggregans in a Hot Spring Cyanobacteria-Dominated Microbial Mat. PMID:33801086
In Silico Analysis of P450s and Their Role in Secondary Metabolism in the Bacterial Class Gammaproteobacteria. PMID:33799696
Building blocks and blueprints for bacterial autolysins. PMID:33793553
Roles of the 14-3-3 gene family in cotton flowering. PMID:33789593
Thousands of previously unknown phages discovered in whole-community human gut metagenomes. PMID:33781338
Mechanism of Resistance to S-metolachlor in Palmer amaranth. PMID:33777086
The Crown Pearl: a draft genome assembly of the European freshwater pearl mussel Margaritifera margaritifera (Linnaeus, 1758). PMID:33755103
Non-essential ribosomal proteins in bacteria and archaea identified using COGs. PMID:33753464
Mediation of a GDSL Esterase/Lipase in Carotenoid Esterification in Tritordeum Suggests a Common Mechanism of Carotenoid Esterification in Triticeae Species. PMID:33746990
Evolution of DNA packaging in gene transfer agents. PMID:33732503
The ChiS-Family DNA-Binding Domain Contains a Cryptic Helix-Turn-Helix Variant. PMID:33727356
Fine Mapping of the "black" Peel Color in Pomegranate (Punica granatum L.) Strongly Suggests That a Mutation in the Anthocyanidin Reductase (ANR) Gene Is Responsible for the Trait. PMID:33719321
Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation. PMID:33711918
Identification of positive and negative regulators in the stepwise developmental progression towards infectivity in Trypanosoma brucei. PMID:33707699
Impact of Phosphate Availability on Membrane Lipid Content of the Model Strains, Streptomyces lividans and Streptomyces coelicolor. PMID:33692768
Metabolic Potential, Ecology and Presence of Associated Bacteria Is Reflected in Genomic Diversity of Mucoromycotina. PMID:33679672
Base Excision Repair AP-Endonucleases-Like Genes Modulate DNA Damage Response and Virulence of the Human Pathogen Cryptococcus neoformans. PMID:33673204
Genetic Adaptations in Mudskipper and Tetrapod Give Insights into Their Convergent Water-to-Land Transition. PMID:33672418
A confinable home-and-rescue gene drive for population modification. PMID:33666174
Deep sea sediments associated with cold seeps are a subsurface reservoir of viral diversity. PMID:33649554
Characterization and Function of a Novel Welan Gum Lyase From Marine Sphingomonas sp. WG. PMID:33633718
Linker domain function predicts pathogenic MLH1 missense variants. PMID:33619096
Recurrent evolution of vertebrate transcription factors by transposase capture. PMID:33602827
Key Components of Inflammasome and Pyroptosis Pathways Are Deficient in Canines and Felines, Possibly Affecting Their Response to SARS-CoV-2 Infection. PMID:33584656
PspC domain-containing protein (PCP) determines Streptococcus mutans biofilm formation through bacterial extracellular DNA release and platelet adhesion in experimental endocarditis. PMID:33577624
Sequence variation, common tissue expression patterns and learning models: a genome-wide survey of vertebrate ribosomal proteins. PMID:33575632
Nudivirus Sequences Identified from the Southern and Western Corn Rootworms (Coleoptera: Chrysomelidae). PMID:33572446
Crucial Role of Juvenile Hormone Receptor Components Methoprene-Tolerant and Taiman in Sexual Maturation of Adult Male Desert Locusts. PMID:33572050
Evolution, expression and functional analysis of cultivated allotetraploid cotton DIR genes. PMID:33568051
Genome-wide dissection reveals diverse pathogenic roles of bacterial Tc toxins. PMID:33540421
N-Glycans and sulfated glycosaminoglycans contribute to the action of diverse Tc toxins on mammalian cells. PMID:33539469
Effect of RIP Overexpression on Abiotic Stress Tolerance and Development of Rice. PMID:33535383
Metabolic engineering of Pseudomonas putida for production of vanillylamine from lignin-derived substrates. PMID:33533574
Holin-Dependent Secretion of the Large Clostridial Toxin TpeL by Clostridium perfringens. PMID:33526612
Are the Closely Related Cobetia Strains of Different Species? PMID:33525723
Genome-Wide Identification and Analysis of Chitinase GH18 Gene Family in Mycogone perniciosa. PMID:33505368
Integrative multiomics analysis of Premolis semirufa caterpillar venom in the search for molecules leading to a joint disease. PMID:33479267
WNT-FRIZZLED-LRP5/6 Signaling Mediates Posterior Fate and Proliferation during Planarian Regeneration. PMID:33467529
TIM29 is required for enhanced stem cell activity during regeneration in the flatworm Macrostomum lignano. PMID:33441924
Conserved sequence motifs in human TMTC1, TMTC2, TMTC3, and TMTC4, new O-mannosyltransferases from the GT-C/PMT clan, are rationalized as ligand binding sites. PMID:33436046
Mild cognitive impairment in novel SPG11 mutation-related sporadic hereditary spastic paraplegia with thin corpus callosum: case series. PMID:33430805
femaleless Controls Sex Determination and Dosage Compensation Pathways in Females of Anopheles Mosquitoes. PMID:33417880
AP-1 family transcription factors: a diverse family of proteins that regulate varied cellular activities in classical hodgkin lymphoma and ALK+ ALCL. PMID:33413671
A Pseudoalteromonas Clade with Remarkable Biosynthetic Potential. PMID:33397702
Improving the Cathodic Biofilm Growth Capabilities of Kyrpidia spormannii EA-1 by Undirected Mutagenesis. PMID:33396703
Probiogenomics Analysis of 97 Lactobacillus crispatus Strains as a Tool for the Identification of Promising Next-Generation Probiotics. PMID:33396617
The Borrelia burgdorferi infection critical BBK13 protein forms large oligomers in the spirochete membrane. PMID:33373861
An Educational Bioinformatics Project to Improve Genome Annotation. PMID:33365016
Environmental Consortium Containing Pseudomonas and Bacillus Species Synergistically Degrades Polyethylene Terephthalate Plastic. PMID:33361127
Effects of Propranolol on Growth, Lipids and Energy Metabolism and Oxidative Stress Response of Phaeodactylum tricornutum. PMID:33353054
Biological and Genomic Characterization of a Novel Jumbo Bacteriophage, vB_VhaM_pir03 with Broad Host Lytic Activity against Vibrio harveyi. PMID:33333990
Genome-wide identification and expression analysis of the CLC gene family in pomegranate (Punica granatum) reveals its roles in salt resistance. PMID:33308157
Automated Prediction and Annotation of Small Open Reading Frames in Microbial Genomes. PMID:33290720
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation. PMID:33270901
High-resolution mapping of Rym14Hb, a wild relative resistance gene to barley yellow mosaic disease. PMID:33263784
Functional analysis of a novel cryptochrome gene (GbCRY1) from Ginkgo biloba. PMID:33258712
Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull (Chroicocephalus novaehollandiae) Reveals the Acquisition of Multidrug Resistance Plasmids. PMID:33239365
Genome-Wide Identification and Expression Profiling Analysis of the Trihelix Gene Family Under Abiotic Stresses in Medicago truncatula. PMID:33238556
A Novel Surface-Exposed Polypeptide Is Successfully Employed as a Target for Developing a Prototype One-Step Immunochromatographic Strip for Specific and Sensitive Direct Detection of Staphylococcus aureus Causing Neonatal Sepsis. PMID:33233724
pdm_utils: a SEA-PHAGES MySQL phage database management toolkit. PMID:33226064
Molecular Characterization of a Novel Polymycovirus From Penicillium janthinellum With a Focus on Its Genome-Associated PASrp. PMID:33193262
A Novel Anphevirus in Aedes albopictus Mosquitoes Is Distributed Worldwide and Interacts with the Host RNA Interference Pathway. PMID:33172032
The Transporter Classification Database (TCDB): 2021 update. PMID:33170213
Genome-wide diversity analysis of TCP transcription factors revealed cases of selection from wild to cultivated barley. PMID:33169329
COG database update: focus on microbial diversity, model organisms, and widespread pathogens. PMID:33167031
The InterPro protein families and domains database: 20 years on. PMID:33156333
Transcriptomics reveal core activities of the plant growth-promoting bacterium Delftia acidovorans RAY209 during interaction with canola and soybean roots. PMID:33151138
Cornus officinalis Ethanolic Extract with Potential Anti-Allergic, Anti-Inflammatory, and Antioxidant Activities. PMID:33138027
Modelling of pathogen-host systems using deeper ORF annotations and transcriptomics to inform proteomics analyses. PMID:33133425
Identification and Expression of the Multidrug and Toxic Compound Extrusion (MATE) Gene Family in Capsicum annuum and Solanum tuberosum. PMID:33120967
Effect of H2A.Z deletion is rescued by compensatory mutations in Fusarium graminearum. PMID:33091009
Analysis of β-d-glucan biosynthetic genes in oat reveals glucan synthesis regulation by light. PMID:33090200
Identification and Expression Pattern of EZH2 in Pig Developing Fetuses. PMID:33083470
Molecular docking and ADMET study of bioactive compounds of Glycyrrhiza glabra against main protease of SARS-CoV2. PMID:33078096
In silico Screening Unveil the Great Potential of Ruminal Bacteria Synthesizing Lasso Peptides. PMID:33072042
NoPv1: a synthetic antimicrobial peptide aptamer targeting the causal agents of grapevine downy mildew and potato late blight. PMID:33067553
Reconstruction of ancient homeobox gene linkages inferred from a new high-quality assembly of the Hong Kong oyster (Magallana hongkongensis) genome. PMID:33059600
Characterization of Novel Lytic Bacteriophages of Achromobacter marplantensis Isolated from a Pneumonia Patient. PMID:33049935
Site-Specific Mutations of GalR Affect Galactose Metabolism in Streptococcus pneumoniae. PMID:33046563
Seeker: alignment-free identification of bacteriophage genomes by deep learning. PMID:33045744
In silico identification and validation of miRNA and their DIR specific targets in Oryza sativa Indica under abiotic stress. PMID:33024905
Genome-Wide Identification of the TCP Gene Family in Broussonetia papyrifera and Functional Analysis of BpTCP8, 14 and 19 in Shoot Branching. PMID:33019650
GbMYBR1 from Ginkgo biloba represses phenylpropanoid biosynthesis and trichome development in Arabidopsis. PMID:32990805
Improvement of Pseudoalteromonas haloplanktis TAC125 as a Cell Factory: IPTG-Inducible Plasmid Construction and Strain Engineering. PMID:32987756
A Plumieridine-Rich Fraction From Allamanda polyantha Inhibits Chitinolytic Activity and Exhibits Antifungal Properties Against Cryptococcus neoformans. PMID:32983042
An Unconventional Flavivirus and Other RNA Viruses in the Sea Cucumber (Holothuroidea; Echinodermata) Virome. PMID:32972018
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing. PMID:32962098
The BB0345 Hypothetical Protein of Borrelia burgdorferi Is Essential for Mammalian Infection. PMID:32928963
Chitinase Gene Positively Regulates Hypersensitive and Defense Responses of Pepper to Colletotrichum acutatum Infection. PMID:32927746
Incubation with a Complex Orange Essential Oil Leads to Evolved Mutants with Increased Resistance and Tolerance. PMID:32916977
In silico functional prediction of hypothetical proteins from the core genome of Corynebacterium pseudotuberculosis biovar ovis. PMID:32913672
The Husavirus Posa-Like Viruses in China, and a New Group of Picornavirales. PMID:32906743
Isolation and Characterization of the Novel Bacteriophage AXL3 against Stenotrophomonas maltophilia. PMID:32882851
Influence of Catecholamines (Epinephrine/Norepinephrine) on Biofilm Formation and Adhesion in Pathogenic and Probiotic Strains of Enterococcus faecalis. PMID:32849320
A Genome-Wide Survey of MATE Transporters in Brassicaceae and Unveiling Their Expression Profiles under Abiotic Stress in Rapeseed. PMID:32825473
Genome Sequence of Trichoderma lixii MUT3171, A Promising Strain for Mycoremediation of PAH-Contaminated Sites. PMID:32825267
Canthaxanthin, a Red-Hot Carotenoid: Applications, Synthesis, and Biosynthetic Evolution. PMID:32824217
Molecular docking and simulation studies on SARS-CoV-2 Mpro reveals Mitoxantrone, Leucovorin, Birinapant, and Dynasore as potent drugs against COVID-19. PMID:32815481
Comparative Genomics Underlines Multiple Roles of Profftella, an Obligate Symbiont of Psyllids: Providing Toxins, Vitamins, and Carotenoids. PMID:32797185
Evolution and Expression of the Membrane Attack Complex and Perforin Gene Family in the Poaceae. PMID:32785137
FAM111 protease activity undermines cellular fitness and is amplified by gain-of-function mutations in human disease. PMID:32776417
A Rosaceae Family-Level Approach To Identify Loci Influencing Soluble Solids Content in Blackberry for DNA-Informed Breeding. PMID:32769135
Marine Oomycetes of the Genus Halophytophthora Harbor Viruses Related to Bunyaviruses. PMID:32760358
A genome-wide scan for candidate lethal variants in Thoroughbred horses. PMID:32753654
Convergent evolution of processivity in bacterial and fungal cellulases. PMID:32747547
Determinants of Copper Resistance in Acidithiobacillus Ferrivorans ACH Isolated from the Chilean Altiplano. PMID:32722087
A cytoskeletal protein complex is essential for division of intracellular amastigotes of Leishmania mexicana. PMID:32719012
Porin from Marine Bacterium Marinomonas primoryensis KMM 3633T: Isolation, Physico-Chemical Properties, and Functional Activity. PMID:32650591
A Review of the Functional Annotations of Important Genes in the AHPND-Causing pVA1 Plasmid. PMID:32635298
Two New Putative Plant Viruses from Wood Metagenomics Analysis of an Esca Diseased Vineyard. PMID:32635154
An update on the origin of SARS-CoV-2: Despite closest identity, bat (RaTG13) and pangolin derived coronaviruses varied in the critical binding site and O-linked glycan residues. PMID:32633815
Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Causing a COVID-19 Case in Morocco. PMID:32616647
Expression of DOCK9 and DOCK11 Analyzed with Commercial Antibodies: Focus on Regulation of Mutually Exclusive First Exon Isoforms. PMID:32605015
MYO, a Candidate Gene for Haploid Induction in Maize Causes Male Sterility. PMID:32575668
Class I KNOX Is Related to Determinacy during the Leaf Development of the Fern Mickelia scandens (Dryopteridaceae). PMID:32560264
Whole genome sequencing identifies an allele responsible for clear vs. turbid plaque morphology in a Mycobacteriophage. PMID:32513117
Transcriptomes reveal expression of hemoglobins throughout insects and other Hexapoda. PMID:32502196
Intestinal epithelium-derived BATF3 promotes colitis-associated colon cancer through facilitating CXCL5-mediated neutrophils recruitment. PMID:32467604
An Endolysin LysSE24 by Bacteriophage LPSE1 Confers Specific Bactericidal Activity against Multidrug-Resistant Salmonella Strains. PMID:32429030
Integrative functional genomics decodes herpes simplex virus 1. PMID:32341360
Draft Genome Sequence of the Urinary Catheter Isolate Enterobacter ludwigii CEB04 with High Biofilm Forming Capacity. PMID:32260576
Cloning, Molecular Characterization and Expression Patterns of DMRTC2 Implicated in Germ Cell Development of Male Tibetan Sheep. PMID:32244802
The Genetic Basis of Natural Variation in Drosophila melanogaster Immune Defense against Enterococcus faecalis. PMID:32098395
The 27th annual Nucleic Acids Research database issue and molecular biology database collection. PMID:31906604