PANDIT
Names
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PANDIT
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
Protein and Associated Nucleotide Domains with Inferred Trees
metasource: re3data.org
version: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
PANDIT
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
Protein and Associated Nucleotide Domains with Inferred Trees
metasource: re3data.orgversion: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
Other names: Protein and Associated Nucleotide Domains with Inferred Trees
Names
More detailed information about this field from each metasource.
PANDIT
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
Protein and Associated Nucleotide Domains with Inferred Trees
metasource: re3data.orgversion: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains. It contains the seed protein sequence alignments from the Pfam-A (curated families) database; nucleotide sequence alignments derived from sequences available for the above and using the protein alignments as 'templates'; protein sequence alignments restricted to the family members for which nucleotide sequences are available; and inferred phylogenetic trees for each alignment.
Description
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PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains. It contains the seed protein sequence alignments from the Pfam-A (curated families) database; nucleotide sequence alignments derived from sequences available for the above and using the protein alignments as 'templates'; protein sequence alignments restricted to the family members for which nucleotide sequences are available; and inferred phylogenetic trees for each alignment.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
>>>!!!<<<Efforts to obtain renewed funding after 2008 were unfortunately not successful. PANDIT has therefore been frozen since November 2008, and its data are not updated since September 2005 when version 17.0 was released (corresponding to Pfam 17.0). The existing data and website remain available from these pages, and should remain stable and, we hope, useful. >>>!!!<<< PANDIT is a collection of multiple sequence alignments and phylogenetic trees. It contains corresponding amino acid and nucleotide sequence alignments, with trees inferred from each alignment. PANDIT is based on the Pfam database (Protein families database of alignments and HMMs), and includes the seed amino acid alignments of most families in the Pfam-A database. DNA sequences for as many members of each family as possible are extracted from the EMBL Nucleotide Sequence Database and aligned according to the amino acid alignment. PANDIT also contains a further copy of the amino acid alignments, restricted to the sequences for which DNA sequences were found.
metasource: re3data.orgversion: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
Webpage:
http://www.ebi.ac.uk/goldman-srv/pandit/Webpage
More detailed information about this field from each metasource.
http://www.ebi.ac.uk/goldman-srv/pandit/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
https://www.ebi.ac.uk/research/goldman/software/pandit
metasource: re3data.orgversion: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
Licence:
Name: otherLicence name
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other
metasource: re3data.orgversion: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
Licence URL
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https://www.ebi.ac.uk/goldman-srv/pandit/Pandit/data/GNULICENSE
metasource: re3data.orgversion: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
Tags:
Tags
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nucleotide sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
coding and non-coding dna
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein domain databases; protein classification
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
dna
metasource: re3data.org
version: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
nucleotide
metasource: re3data.org
version: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
pfam-a
metasource: re3data.org
version: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
protein
metasource: re3data.org
version: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
nucleotide sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
coding and non-coding dna
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
protein sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
protein domain databases; protein classification
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
dna
metasource: re3data.orgversion: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
nucleotide
metasource: re3data.orgversion: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
pfam-a
metasource: re3data.orgversion: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
protein
metasource: re3data.orgversion: re3data.org: PANDIT; editing status 2022-03-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3X63C last accessed: 2022-11-04
nucleic acid sequence coding and non-coding dna protein sequence protein domains and classification dna nucleotide pfam-a protein
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