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ADDA - A Domain Database

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ADDA is a global clustering of protein sequences into protein domains and protein domain families. The database currently contains domains for 1.5 Mio sequences from UniProt, ENSEMBL, and other sequence databases. The domains are grouped into 123,000 families of which 40,000 have more than five members. The database is built in an entirely automated fashion and is updated regularly. The data is available for download and for querying via the WWW.

Description

More detailed information about this field from each metasource.

ADDA is a global clustering of protein sequences into protein domains and protein domain families. The database currently contains domains for 1.5 Mio sequences from UniProt, ENSEMBL, and other sequence databases. The domains are grouped into 123,000 families of which 40,000 have more than five members. The database is built in an entirely automated fashion and is updated regularly. The data is available for download and for querying via the WWW.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Webpage:

http://ekhidna.biocenter.helsinki.fi/sqgraph/pairsdb/

Webpage

More detailed information about this field from each metasource.

http://ekhidna.biocenter.helsinki.fi/sqgraph/pairsdb/

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Tags:

Tags
More detailed information about this field from each metasource.

protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein domain databases; protein classification
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein sequence protein domains and classification

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Database of length variantion in protein domains

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ProDom is a comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.

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Related protein sequences (clusters)of Reference Sequence proteins encoded by complete genomes

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Functional divergence between the subfamilies of a protein domain family

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Orthologous and Paralogous Transcripts in Clades

Simple Modular Architecture Research Tool

SMART (Simple Modular Architecture Research Tool) is a web resource providing simple identification and extensive annotation of protein domains and the exploration of protein domain architectures. It ...

DomIns - Database of Domain Insertions

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Integrated resource of protein families, domains and functional sites

InterPro is a resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this ...

EVEREST - EVolutionary Ensembles of REcurrent SegmenTs

EVEREST is an automatic computational process identifying protein domainsand classifying them into families. The EVEREST database contains 20,029families, each defined by one or more HMMER HMMs. EVERE ...

Death Domain Database

Death Domain Database is a manually curated database of protein-protein interactions for Death Domain Superfamily.

SBASE

SBASE (http://www.icgeb.trieste.it/sbase) is an on-line collection of protein domain sequences and related computational tools designed to facilitate detection of domain homologies based on simple dat ...

PIR SuperFamily

The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary ...

PALI

The database of Phylogeny and ALIgnment of homologous protein structures (PALI) contains structure-based sequence alignments and dendrograms based on information primarily derived from the structural ...

Pfam

The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Pfam also generates higher-level groupings of related ent ...

Dali database

The Dali database is based on exhaustive all-against-all 3D structure comparison of protein structures currently in the Protein Data Bank (PDB). The classification and alignments are automatically mai ...

SIMAP

Protein sequences are of utmost importance for studying the function and evolution of genes and genomes. Therefore a rich collection of methods in computational biology relies on the analysis and comp ...

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine