Tag: nucleic acids
Found 21 sources
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Integrated resource of protein families, domains and functional sites
InterPro is a resource that provides functional analysis of protein sequences by classifying them into families and predicting the presence of domains and important sites. To classify proteins in this way, InterPro uses predictive models, known as si
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Biological Magnetic Resonance Databank
BMRB collects, annotates, archives, and disseminates (worldwide in the public domain) the important spectral and quantitative data derived from NMR spectroscopic investigations of biological macromolecules and metabolites. The goal is to empower scie
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Nucleic Acids Database
The Nucleic Acids Database contains information about experimentally-determined nucleic acids and complex assemblies. NDB can be used to perform searches based on annotations relating to sequence, structure and function, and to download, analyze, and
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CottonGen
CottonGen is a cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure. CottonGen supercedes Cotto
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Evidence and Conclusion Ontology
The Evidence and Conclusion Ontology (ECO) contains terms that describe types of evidence and assertion methods. ECO terms are used in the process of biocuration to capture the evidence that supports biological assertions (e.g. gene product X has fun
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iProX
iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtained from proteomics experiments. The iProX repository employs a web-based proteome data submission process and open sharing of mass spectrometry-based
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MINAS - A Database of Metal Ions in Nucleic AcidS
MINAS contains the exact geometric information on the first and second-shell coordinating ligands of every metal ion present in nucleic acid structures that are deposited in the PDB and NDB. Containing also the sequence information of the binding poc
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NNDB
Nearest Neighbor parameters for predicting RNA folding
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Nucleic Acid Phylogenetic Profile
NAPP (Nucleic Acids Phylogenetic Profile) enables users to retrieve RNA-rich clusters from any genome in a list of 1000+ sequenced bacterial genomes. RNA-rich clusters can be viewed separately or, alternatively, all tiles from RNA-rich clusters can b
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PhaSepDB
PhaSepDB is a novel database that provides a collection of phase separation related proteins manually curated from publications and public database.
In addition to curated proteins, PhaSepDB also provides the researchers with molecular signatures th
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Nucleotide Sequence Database Collaboration
This database consists of a joint effort to collect and disseminate databases containing DNA and RNA sequences. It is a long-standing foundational initiative that operates between DDBJ, EMBL-EBI and NCBI. It covers the spectrum of data raw reads, th
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GESS-db
A database of global evaluation of SARS-CoV-2/hCoV-19 sequences.
If you used GESS for scientific publication, we would appreciate citations to the following paper:.
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CPPsite
Experimentally validated Cell Penetrating Peptides
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OHNOLOGS v2
A comprehensive resource for the genes retained from whole genome duplication in vertebrates.
The code repository for OHNOLOGS v2.0 sever and multi-genome synteny comparison.
A Repository of Genes Retained from Whole Genome Duplications in the Vert
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SAbDab
Structural Antibody Database
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Big Data Nucleic Acid Simulations Database
Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNASim is a complete platform to hold and analyse nucleic acids simulation data, based on two noSQL database engines: Cassandra to hold trajectory data an
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Ligand-Gated Ion Channel Database
The Ligand-Gated Ion Channel database provides access to information about transmembrane proteins that exist under different conformations, with three primary subfamilies: the cys-loop superfamily, the ATP gated channels superfamily, and the glutamat
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ONQUADRO
A database that collects tetrads, quadruplexes, and G4-helices found in PDB-deposited structures of nucleic acids. It stores their sequences, secondary and tertiary structures, and motif-specific description including planarity, rise and twist parame
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NCBI GSS
>>>!!! GSS sequences are now being merged into the NCBI Nucleotide database !!!<<<
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NCBI Nucleotide
The NCBI Nucleotide database collects sequences from such sources as GenBank, RefSeq, TPA, and PDB. Sequences collected relate to genome, gene, and transcript sequence data, and provide a foundation for research related to the biomedical field.
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long-read-tools
Long-read-tools is an interactive database of software tools for the analysis of long read sequencing data.
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