Microbial Diversity and Interaction Specificity in Kombucha Tea Fermentations.
PMID:35670539
Homology-based classification of accessory proteins in coronavirus genomes uncovers extremely dynamic evolution of gene content.
PMID:35575901
Small RNAs beyond Model Organisms: Have We Only Scratched the Surface?
PMID:35457265
Detection of SARS-CoV-2 B.1.351 (Beta) Variant through Wastewater Surveillance before Case Detection in a Community, Oregon, USA.
PMID:35452383
Eukaryotic tRNA sequences present conserved and amino acid-specific structural signatures.
PMID:35380696
Isolation and sequencing of a single copy of an introgressed chromosome from a complex genome for gene and SNP identification.
PMID:35275251
Was the Last Bacterial Common Ancestor a Monoderm after All?
PMID:35205421
Whole-Genome Sequences of Two Kazachstania barnettii Strains Isolated from Anthropic Environments.
PMID:35106561
Transmembrane Helices Are an Over-Presented and Evolutionarily Conserved Source of Major Histocompatibility Complex Class I and II Epitopes.
PMID:35087515
Phylogenetic Analysis of the Membrane Attack Complex/Perforin Domain-Containing Proteins in Gossypium and the Role of GhMACPF26 in Cotton Under Cold Stress.
PMID:34868097
Plant Growth Promotion Diversity in Switchgrass-Colonizing, Diazotrophic Endophytes.
PMID:34867848
Natural Phytochemicals, Luteolin and Isoginkgetin, Inhibit 3C Protease and Infection of FMDV, In Silico and In Vitro.
PMID:34834926
Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning.
PMID:34645826
The investigation of nonsynonymous SNPs of human SLC6A4 gene associated with depression: An in silico approach.
PMID:34466701
The Diplodia Tip Blight Pathogen Sphaeropsis sapinea Is the Most Common Fungus in Scots Pines' Mycobiome, Irrespective of Health Status-A Case Study from Germany.
PMID:34436146
A global map of associations between types of protein posttranslational modifications and human genetic diseases.
PMID:34430807
New Insect Host Defense Peptides (HDP) From Dung Beetle (Coleoptera: Scarabaeidae) Transcriptomes.
PMID:34374763
Metabolic Changes in Early-Stage Non-Small Cell Lung Cancer Patients after Surgical Resection.
PMID:34208545
The Effect of Artificial Media and Temperature on the Growth and Development of the Honey Bee Brood Pathogen Ascosphaera apis.
PMID:34066178
Sub-genic intolerance, ClinVar, and the epilepsies: A whole-exome sequencing study of 29,165 individuals.
PMID:33932343
Understanding the molecular evolution of tiger diversity through DNA barcoding marker ND4 and NADH dehydrogenase complex using computational biology.
PMID:33884571
Effects of in situ Remediation With Nanoscale Zero Valence Iron on the Physicochemical Conditions and Bacterial Communities of Groundwater Contaminated With Arsenic.
PMID:33815330
High Prevalence of Genogroup I and Genogroup II Picobirnaviruses in Dromedary Camels.
PMID:33800270
In Silico Investigation of Potential Applications of Gamma Carbonic Anhydrases as Catalysts of CO2 Biomineralization Processes: A Visit to the Thermophilic Bacteria Persephonella hydrogeniphila, Persephonella marina, Thermosulfidibacter takaii, and Thermus thermophilus.
PMID:33799806
A comprehensive analysis and resource to use CRISPR-Cas13 for broad-spectrum targeting of RNA viruses.
PMID:33778788
Genomic aberrations after short-term exposure to colibactin-producing E. coli transform primary colon epithelial cells.
PMID:33579932
BRAKER2: automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS supported by a protein database.
PMID:33575650
In silico analysis suggests less effective MHC-II presentation of SARS-CoV-2 RBM peptides: Implication for neutralizing antibody responses.
PMID:33571241
Interpopulation differences of retroduplication variations (RDVs) in rice retrogenes and their phenotypic correlations.
PMID:33510865
The complete mitochondrial genome of Histiostoma blomquisti (Acari: Histiostomatidae).
PMID:33473592
MHC-II constrains the natural neutralizing antibody response to the SARS-CoV-2 spike RBM in humans.
PMID:33398284
Metagenomic characterisation of additional and novel avian viruses from Australian wild ducks.
PMID:33335272
DNA-Based Authentication and Metabolomics Analysis of Medicinal Plants Samples by DNA Barcoding and Ultra-High-Performance Liquid Chromatography/Triple Quadrupole Mass Spectrometry (UHPLC-MS).
PMID:33218119
Advances in RNA 3D Structure Modeling Using Experimental Data.
PMID:33193680
Alpha-Carbonic Anhydrases from Hydrothermal Vent Sources as Potential Carbon Dioxide Sequestration Agents: In Silico Sequence, Structure and Dynamics Analyses.
PMID:33138066
Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts.
PMID:32994284
Metagenomic characterisation of avian parvoviruses and picornaviruses from Australian wild ducks.
PMID:32733035
A systematic strategy for the investigation of vaccines and drugs targeting bacteria.
PMID:32637049
The Coevolution of Fungal Mitochondrial Introns and Their Homing Endonucleases (GIY-YIG and LAGLIDADG).
PMID:32585032
Endophytic and endolichenic fungal diversity in maritime Antarctica based on cultured material and their evolutionary position among Dikarya.
PMID:32467890
Complete Genome Sequence of Feline Leukemia Virus Kawakami-Theilen Strain KT-FeLV-UCD-1.
PMID:32409536
Codon Pairs are Phylogenetically Conserved: A comprehensive analysis of codon pairing conservation across the Tree of Life.
PMID:32401752
Comparative in silico analysis of ftsZ gene from different bacteria reveals the preference for core set of codons in coding sequence structuring and secondary structural elements determination.
PMID:31841523
Lipid Related Genes Altered in NASH Connect Inflammation in Liver Pathogenesis Progression to HCC: A Canonical Pathway.
PMID:31717414
Universal concept signature analysis: genome-wide quantification of new biological and pathological functions of genes and pathways.
PMID:31631213
Transposable element discovery and characterization of LTR-retrotransposon evolutionary lineages in the tropical fruit species Passiflora edulis.
PMID:31549373
Structural characterization of the PCV2d virus-like particle at 3.3 Å resolution reveals differences to PCV2a and PCV2b capsids, a tetranucleotide, and an N-terminus near the icosahedral 3-fold axes.
PMID:31505320
GPT2 mutations in autosomal recessive developmental disability: extending the clinical phenotype and population prevalence estimates.
PMID:31471722
Molecular basis of egg coat cross-linking sheds light on ZP1-associated female infertility.
PMID:31300655
DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products.
PMID:31286860
A Novel PL9 Pectate Lyase from Paenibacillus polymyxa KF-1: Cloning, Expression, and Its Application in Pectin Degradation.
PMID:31234557
CAM: an alignment-free method to recover phylogenies using codon aversion motifs.
PMID:31198636
Promoter activity of ORF-less gene cassettes isolated from the oral metagenome.
PMID:31182805
A Bioinformatics View of Glycan⁻Virus Interactions.
PMID:31018588
Sequence and expression levels of circular RNAs in progenitor cell types during mouse corticogenesis.
PMID:30926618
Advancing Computational Toxicology in the Big Data Era by Artificial Intelligence: Data-Driven and Mechanism-Driven Modeling for Chemical Toxicity.
PMID:30907586
Functional protein representations from biological networks enable diverse cross-species inference.
PMID:30847485
Global genetic diversity of var2csa in Plasmodium falciparum with implications for malaria in pregnancy and vaccine development.
PMID:30337594
A wheat cytochrome P450 enhances both resistance to deoxynivalenol and grain yield.
PMID:30312356
Structural and functional characterisation of the entry point to pyocyanin biosynthesis in Pseudomonas aeruginosa defines a new 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase subclass.
PMID:30242059
CIGene: a literature-based online resource for cancer initiation genes.
PMID:30045691
Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge.
PMID:29688374
A comparative genomics study of carbohydrate/glucose metabolic genes: from fish to mammals.
PMID:29642853
ProtDataTherm: A database for thermostability analysis and engineering of proteins.
PMID:29377907
qPortal: A platform for data-driven biomedical research.
PMID:29352322
Structural and functional annotation of hypothetical proteins of human adenovirus: prioritizing the novel drug targets.
PMID:29212526
RefSeq: an update on prokaryotic genome annotation and curation.
PMID:29112715
SABIO-RK: an updated resource for manually curated biochemical reaction kinetics.
PMID:29092055
Towards PubMed 2.0.
PMID:29083299
A method for named entity normalization in biomedical articles: application to diseases and plants.
PMID:29029598
Microbial phylogeny determines transcriptional response of resistome to dynamic composting processes.
PMID:28814344
Molecular phylogeny reveals food plasticity in the evolution of true ladybird beetles (Coleoptera: Coccinellidae: Coccinellini).
PMID:28651535
Targeted mutagenesis in tetraploid switchgrass (Panicum virgatum L.) using CRISPR/Cas9.
PMID:28640964
HGPEC: a Cytoscape app for prediction of novel disease-gene and disease-disease associations and evidence collection based on a random walk on heterogeneous network.
PMID:28619054
Mutual Regulation of NOD2 and RIG-I in Zebrafish Provides Insights into the Coordination between Innate Antibacterial and Antiviral Signaling Pathways.
PMID:28555019
Understanding the conservation patterns and molecular phylogenetics of human death receptors family through computational biology.
PMID:28324447
Metatranscriptomic Profiling Reveals Linkages between the Active Rumen Microbiome and Feed Efficiency in Beef Cattle.
PMID:28235871
Phylogenetic analysis of ionotropic L-glutamate receptor genes in the Bilateria, with special notes on Aplysia californica.
PMID:28077092
The Human Kinome Targeted by FDA Approved Multi-Target Drugs and Combination Products: A Comparative Study from the Drug-Target Interaction Network Perspective.
PMID:27828998
Induction of specific humoral immune response in mice immunized with ROP18 nanospheres from Toxoplasma gondii.
PMID:27785602
Comparison of FDA Approved Kinase Targets to Clinical Trial Ones: Insights from Their System Profiles and Drug-Target Interaction Networks.
PMID:27547755
A gene browser of colorectal cancer with literature evidence and pre-computed regulatory information to identify key tumor suppressors and oncogenes.
PMID:27477450
The Landscape of A-to-I RNA Editome Is Shaped by Both Positive and Purifying Selection.
PMID:27467689
Identification and Characterization of Sex-Biased MicroRNAs in Bactrocera dorsalis (Hendel).
PMID:27441641
A proposed integrated approach for the preclinical evaluation of phage therapy in Pseudomonas infections.
PMID:27301427
The Ontology for Biomedical Investigations.
PMID:27128319
GCGene: a gene resource for gastric cancer with literature evidence.
PMID:27127885
High-performance integrated virtual environment (HIVE): a robust infrastructure for next-generation sequence data analysis.
PMID:26989153
Developing informative microsatellite markers for non-model species using reference mapping against a model species' genome.
PMID:26976328
REGene: a literature-based knowledgebase of animal regeneration that bridge tissue regeneration and cancer.
PMID:26975833
Venom gland transcriptome analyses of two freshwater stingrays (Myliobatiformes: Potamotrygonidae) from Brazil.
PMID:26916342
Multi-tissue transcriptomics for construction of a comprehensive gene resource for the terrestrial snail Theba pisana.
PMID:26852673
Bacterial Diversity and Community Structure in Two Bornean Nepenthes Species with Differences in Nitrogen Acquisition Strategies.
PMID:26790863
CSGene: a literature-based database for cell senescence genes and its application to identify critical cell aging pathways and associated diseases.
PMID:26775705
Network-Thinking: Graphs to Analyze Microbial Complexity and Evolution.
PMID:26774999
ECGene: A Literature-Based Knowledgebase of Endometrial Cancer Genes.
PMID:26699919
Challenges to a molecular approach to prey identification in the Burmese python, Python molurus bivittatus.
PMID:26623196
An evidence-based knowledgebase of metastasis suppressors to identify key pathways relevant to cancer metastasis.
PMID:26486520
Entropy-scaling search of massive biological data.
PMID:26436140
Exploring the Molecular Interactions of 7,8-Dihydroxyflavone and Its Derivatives with TrkB and VEGFR2 Proteins.
PMID:26404256
Sinorhizobium meliloti Phage ΦM9 Defines a New Group of T4 Superfamily Phages with Unusual Genomic Features but a Common T=16 Capsid.
PMID:26311868
Increased efficiency in identifying mixed pollen samples by meta-barcoding with a dual-indexing approach.
PMID:26194794
CoagVDb: a comprehensive database for coagulation factors and their associated SAPs.
PMID:26187044
dbEMT: an epithelial-mesenchymal transition associated gene resource.
PMID:26099468
Chromatin Signature Identifies Monoallelic Gene Expression Across Mammalian Cell Types.
PMID:26092837
Pedican: an online gene resource for pediatric cancers with literature evidence.
PMID:26073932
An integrated structural proteomics approach along the druggable genome of Corynebacterium pseudotuberculosis species for putative druggable targets.
PMID:26041381
A low-latency, big database system and browser for storage, querying and visualization of 3D genomic data.
PMID:25990738
Intuitive web-based experimental design for high-throughput biomedical data.
PMID:25954760
The Drosophila TIPE family member Sigmar interacts with the Ste20-like kinase Misshapen and modulates JNK signaling, cytoskeletal remodeling and autophagy.
PMID:25836674
Module organization and variance in protein-protein interaction networks.
PMID:25797237
Differential expression of HERV-K (HML-2) proviruses in cells and virions of the teratocarcinoma cell line Tera-1.
PMID:25746218
Cancer based pharmacogenomics network supported with scientific evidences: from the view of drug repurposing.
PMID:25729430
The effect of inversion at 8p23 on BLK association with lupus in Caucasian population.
PMID:25545785
Systems analysis of high-throughput data.
PMID:25480641
Assessing proteinase K resistance of fish prion proteins in a scrapie-infected mouse neuroblastoma cell line.
PMID:25402173
The megavirus chilensis Cu,Zn-superoxide dismutase: the first viral structure of a typical cellular copper chaperone-independent hyperstable dimeric enzyme.
PMID:25355875
WISCOD: a statistical web-enabled tool for the identification of significant protein coding regions.
PMID:25313355
Computational biophysical, biochemical, and evolutionary signature of human R-spondin family proteins, the member of canonical Wnt/β-catenin signaling pathway.
PMID:25276837
Developing genomic knowledge bases and databases to support clinical management: current perspectives.
PMID:25276091
Genome analysis of the first Marseilleviridae representative from Australia indicates that most of its genes contribute to virus fitness.
PMID:25275139
Big data in chemical toxicity research: the use of high-throughput screening assays to identify potential toxicants.
PMID:25195622
Microsporidian genomes harbor a diverse array of transposable elements that demonstrate an ancestry of horizontal exchange with metazoans.
PMID:25172905
KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems.
PMID:25115331
morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring.
PMID:25096057
5meCpG epigenetic marks neighboring a primate-conserved core promoter short tandem repeat indicate X-chromosome inactivation.
PMID:25078280
Comparative genome analysis reveals metabolic versatility and environmental adaptations of Sulfobacillus thermosulfidooxidans strain ST.
PMID:24940621
The combination of functional metagenomics and an oil-fed enrichment strategy revealed the phylogenetic diversity of lipolytic bacteria overlooked by the cultivation-based method.
PMID:24859309
categoryCompare, an analytical tool based on feature annotations.
PMID:24808906
The chlamydiales pangenome revisited: structural stability and functional coherence.
PMID:24704919
Effect of Wnt3a on keratinocytes utilizing in vitro and bioinformatics analysis.
PMID:24686518
Genome-scale metabolic network reconstruction of Saccharopolyspora spinosa for spinosad production improvement.
PMID:24628959
In silico analysis on structure and DNA binding mode of AtNAC1, a NAC transcription factor from Arabidopsis thaliana.
PMID:24570356
Human transporter database: comprehensive knowledge and discovery tools in the human transporter genes.
PMID:24558441
A Bayesian sampler for optimization of protein domain hierarchies.
PMID:24494927
uPEPperoni: an online tool for upstream open reading frame location and analysis of transcript conservation.
PMID:24484385
Non-synonymous variations in cancer and their effects on the human proteome: workflow for NGS data biocuration and proteome-wide analysis of TCGA data.
PMID:24467687
CADM1 controls actin cytoskeleton assembly and regulates extracellular matrix adhesion in human mast cells.
PMID:24465823
Low frequency variants, collapsed based on biological knowledge, uncover complexity of population stratification in 1000 genomes project data.
PMID:24385916
Network analysis of transcription factors for nuclear reprogramming into induced pluripotent stem cell using bioinformatics.
PMID:24381858
Phylogenetic relationship and virulence inference of Streptococcus Anginosus Group: curated annotation and whole-genome comparative analysis support distinct species designation.
PMID:24341328
A Signaling Network of Thyroid-Stimulating Hormone.
PMID:24255551
PubChem BioAssay: 2014 update.
PMID:24198245
HypoxiaDB: a database of hypoxia-regulated proteins.
PMID:24178989
Quantification of the impact of PSI:Biology according to the annotations of the determined structures.
PMID:24139526
Highly cited publications in pediatric neurosurgery: part 2.
PMID:24113776
STAR: an integrated solution to management and visualization of sequencing data.
PMID:24078702
A genome-wide systematic analysis reveals different and predictive proliferation expression signatures of cancerous vs. non-cancerous cells.
PMID:24068970
IQdb: an intelligence quotient score-associated gene resource for human intelligence.
PMID:24030781
CellMinerHCC: a microarray-based expression database for hepatocellular carcinoma cell lines.
PMID:24016071
SHARP: genome-scale identification of gene-protein-reaction associations in cyanobacteria.
PMID:23975204
GnpIS: an information system to integrate genetic and genomic data from plants and fungi.
PMID:23959375
Organism-adapted specificity of the allosteric regulation of pyruvate kinase in lactic acid bacteria.
PMID:23946717
BioBin: a bioinformatics tool for automating the binning of rare variants using publicly available biological knowledge.
PMID:23819467
WebScipio: Reconstructing alternative splice variants of eukaryotic proteins.
PMID:23677611
Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.
PMID:23668630
Equivalent indels--ambiguous functional classes and redundancy in databases.
PMID:23658777
The highly pathogenic H7N3 avian influenza strain from July 2012 in Mexico acquired an extended cleavage site through recombination with host 28S rRNA.
PMID:23635025
CADM1 is a key receptor mediating human mast cell adhesion to human lung fibroblasts and airway smooth muscle cells.
PMID:23620770
The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli.
PMID:23620297
Genome-wide association study of sleep in Drosophila melanogaster.
PMID:23617951
D-Light on promoters: a client-server system for the analysis and visualization of cis-regulatory elements.
PMID:23617301
Genomes of the class Erysipelotrichia clarify the firmicute origin of the class Mollicutes.
PMID:23606477
Evolutionary paths of the cAMP-dependent protein kinase (PKA) catalytic subunits.
PMID:23593352
Identification and prioritization of novel uncharacterized peptidases for biochemical characterization.
PMID:23584835
Computational analysis of C-reactive protein for assessment of molecular dynamics and interaction properties.
PMID:23494263
A novel method for cross-species gene expression analysis.
PMID:23444967
The Genome of Nitrospina gracilis Illuminates the Metabolism and Evolution of the Major Marine Nitrite Oxidizer.
PMID:23439773
Why does a protein's evolutionary rate vary over time?
PMID:23436005
Using BioBin to explore rare variant population stratification.
PMID:23424138
TriageTools: tools for partitioning and prioritizing analysis of high-throughput sequencing data.
PMID:23408855
Complete Genome Sequence of Listeria monocytogenes LL195, a Serotype 4b Strain from the 1983-1987 Listeriosis Epidemic in Switzerland.
PMID:23405339
Does computational biology help us to understand the molecular phylogenetics and evolution of cluster of differentiation (CD) proteins?
PMID:23344551
Research resource: the Endometrium Database Resource (EDR).
PMID:23340253
Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs.
PMID:23308262
Phyletic profiling with cliques of orthologs is enhanced by signatures of paralogy relationships.
PMID:23308060
From understanding the development landscape of the canonical fate-switch pair to constructing a dynamic landscape for two-step neural differentiation.
PMID:23300518
Poly-glutamine expanded huntingtin dramatically alters the genome wide binding of HSF1.
PMID:23293686
PubChem3D: conformer ensemble accuracy.
PMID:23289532
Large-scale sequencing based on full-length-enriched cDNA libraries in pigs: contribution to annotation of the pig genome draft sequence.
PMID:23150988
Genome sequences of wild and domestic bactrian camels.
PMID:23149746
Linking genome annotation projects with genetic disorders using ontologies.
PMID:23149630
Comparative genomics of neuroglobin reveals its early origins.
PMID:23133533
The genome of the obligate intracellular parasite Trachipleistophora hominis: new insights into microsporidian genome dynamics and reductive evolution.
PMID:23133373
Evolution and diversity of periplasmic proteins involved in copper homeostasis in gamma proteobacteria.
PMID:23122209
CellLineNavigator: a workbench for cancer cell line analysis.
PMID:23118487
MODOMICS: a database of RNA modification pathways--2013 update.
PMID:23118484
A Neuronal Transcriptome Response Involving Stress Pathways is Buffered by Neuronal microRNAs.
PMID:23115547
ChopSticks: High-resolution analysis of homozygous deletions by exploiting concordant read pairs.
PMID:23110596
Integrative analysis of somatic mutations altering microRNA targeting in cancer genomes.
PMID:23091610
Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis.
PMID:23088596
The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels.
PMID:23071454
"Orphan" retrogenes in the human genome.
PMID:23066043
CADM1 is expressed as multiple alternatively spliced functional and dysfunctional isoforms in human mast cells.
PMID:23063768
The cancer exome generated by alternative mRNA splicing dilutes predicted HLA class I epitope density.
PMID:23049726
Rapid identification of pathogens from positive blood cultures by multiplex polymerase chain reaction using the FilmArray system.
PMID:22999332
Online tools for bioinformatics analyses in nutrition sciences.
PMID:22983844
RhesusBase: a knowledgebase for the monkey research community.
PMID:22965133
Peer2ref: a peer-reviewer finding web tool that uses author disambiguation.
PMID:22958760
On-line resources for Xenopus.
PMID:22956109
Composition-based classification of short metagenomic sequences elucidates the landscapes of taxonomic and functional enrichment of microorganisms.
PMID:22941634
Identification of human proteins that modify misfolding and proteotoxicity of pathogenic ataxin-1.
PMID:22916034
A gene expression profile of stem cell pluripotentiality and differentiation is conserved across diverse solid and hematopoietic cancers.
PMID:22909066
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.
PMID:22901054
TPX: Biomedical literature search made easy.
PMID:22829734
Autotaxin/ENPP2 regulates oligodendrocyte differentiation in vivo in the developing zebrafish hindbrain.
PMID:22821873
CIDeR: multifactorial interaction networks in human diseases.
PMID:22809392
AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots.
PMID:22807623
Deciphering a global network of functionally associated post-translational modifications.
PMID:22806145
BiofOmics: a Web platform for the systematic and standardized collection of high-throughput biofilm data.
PMID:22768184
Oncogenic potential is related to activating effect of cancer single and double somatic mutations in receptor tyrosine kinases.
PMID:22753356
Fungal genome resources at NCBI.
PMID:22737589
Reevaluation of the coding potential and proteomic analysis of the BAC-derived rhesus cytomegalovirus strain 68-1.
PMID:22718821
Transcriptional response of BALB/c mouse thyroids following in vivo astatine-211 exposure reveals distinct gene expression profiles.
PMID:22697397
The immune epitope database: a historical retrospective of the first decade.
PMID:22681406
Mine, yours, ours? Sharing data on human genetic variation.
PMID:22679483
Quartet decomposition server: a platform for analyzing phylogenetic trees.
PMID:22676320
Identification of RARRES1 as a core regulator in liver fibrosis.
PMID:22669512
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways.
PMID:22649059
Enzymatic activities and DNA substrate specificity of Mycobacterium tuberculosis DNA helicase XPB.
PMID:22615856
A mass spectrometry proteomics data management platform.
PMID:22611296
Comparative genome analysis of central nitrogen metabolism and its control by GlnR in the class Bacilli.
PMID:22607086
Computational methods to work as first-pass filter in deleterious SNP analysis of alkaptonuria.
PMID:22606059
Analyzing effects of naturally occurring missense mutations.
PMID:22577471
CENP-T proteins are conserved centromere receptors of the Ndc80 complex.
PMID:22561346
Linking genes to diseases with a SNPedia-Gene Wiki mashup.
PMID:22541597
GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity Database.
PMID:22536971
Tachyon search speeds up retrieval of similar sequences by several orders of magnitude.
PMID:22531216
Identification and characterization of novel mutations in the human gene encoding the catalytic subunit Calpha of protein kinase A (PKA).
PMID:22514673
Domain enhanced lookup time accelerated BLAST.
PMID:22510480
Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns.
PMID:22507400
A novel 3-hydroxysteroid dehydrogenase that regulates reproductive development and longevity.
PMID:22505847
Fast and accurate taxonomic assignments of metagenomic sequences using MetaBin.
PMID:22496776
Bidirectional regulation between WDR83 and its natural antisense transcript DHPS in gastric cancer.
PMID:22491477
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries.
PMID:22453055
CADM1 isoforms differentially regulate human mast cell survival and homotypic adhesion.
PMID:22438059
MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.
PMID:22434833
Transcriptome analysis reveals the time of the fourth round of genome duplication in common carp (Cyprinus carpio).
PMID:22424280
In silico profiling of deleterious amino acid substitutions of potential pathological importance in haemophlia A and haemophlia B.
PMID:22423892
The origin, global distribution, and functional impact of the human 8p23 inversion polymorphism.
PMID:22399572
From a single whole exome read to notions of clinical screening: primary ciliary dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula.
PMID:22384920
GrameneMart: the BioMart data portal for the Gramene project.
PMID:22374386
Target selection for structural genomics based on combining fold recognition and crystallisation prediction methods: application to the human proteome.
PMID:22354707
From expression cloning to gene modeling: the development of Xenopus gene sequence resources.
PMID:22344767
Evolution of the eukaryotic ARP2/3 activators of the WASP family: WASP, WAVE, WASH, and WHAMM, and the proposed new family members WAWH and WAML.
PMID:22316129
Identification of Albizia lebbeck seed coat chitin-binding vicilins (7S globulins) with high toxicity to the larvae of the bruchid Callosobruchus maculatus.
PMID:22267002
Large-scale mapping of human protein interactome using structural complexes.
PMID:22261719
Influenza research database: an integrated bioinformatics resource for influenza research and surveillance.
PMID:22260278
The Biofuel Feedstock Genomics Resource: a web-based portal and database to enable functional genomics of plant biofuel feedstock species.
PMID:22250003
Guidelines for information about therapy experiments: a proposal on best practice for recording experimental data on cancer therapy.
PMID:22226027
Investigation of the origin and spread of a Mammalian transposable element based on current sequence diversity.
PMID:22222953
Evolution and functional diversification of the small heat shock protein/α-crystallin family in higher plants.
PMID:22210597
Identification of co-occurring transcription factor binding sites from DNA sequence using clustered position weight matrices.
PMID:22187154
Solving the Problem: Genome Annotation Standards before the Data Deluge.
PMID:22180819
Network systems biology for targeted cancer therapies.
PMID:22176777
An open-ended plea for the development of a global database of HIV vaccine responses.
PMID:22156846
Identification and removal of ribosomal RNA sequences from metatranscriptomes.
PMID:22155869
In-silico human genomics with GeneCards.
PMID:22155609
Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy?
PMID:22149708
PubChem's BioAssay Database.
PMID:22140110
SNPedia: a wiki supporting personal genome annotation, interpretation and analysis.
PMID:22140107
BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata.
PMID:22139929
AutismKB: an evidence-based knowledgebase of autism genetics.
PMID:22139918
MOPED: Model Organism Protein Expression Database.
PMID:22139914
neXtProt: a knowledge platform for human proteins.
PMID:22139911
PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse.
PMID:22135298
VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics.
PMID:22135296
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea.
PMID:22134646
Recently confirmed apoptosis-inducing lead compounds isolated from marine sponge of potential relevance in cancer treatment.
PMID:22131960
MitoMiner: a data warehouse for mitochondrial proteomics data.
PMID:22121219
eXframe: reusable framework for storage, analysis and visualization of genomics experiments.
PMID:22103807
IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins.
PMID:22102591
SABIO-RK--database for biochemical reaction kinetics.
PMID:22102587
Mouse Phenome Database (MPD).
PMID:22102583
ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage.
PMID:22102570
Peroxiredoxins in parasites.
PMID:22098136
Ensembl 2012.
PMID:22086963
MEROPS: the database of proteolytic enzymes, their substrates and inhibitors.
PMID:22086950
Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.
PMID:22085807
BGMUT: NCBI dbRBC database of allelic variations of genes encoding antigens of blood group systems.
PMID:22084196
PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits.
PMID:22080514
STITCH 3: zooming in on protein-chemical interactions.
PMID:22075997
OGEE: an online gene essentiality database.
PMID:22075992
The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse.
PMID:22075990
PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries.
PMID:22070195
VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors.
PMID:22067448
Single-domain parvulins constitute a specific marker for recently proposed deep-branching archaeal subgroups.
PMID:22065628
EcoliWiki: a wiki-based community resource for Escherichia coli.
PMID:22064863
The LANL hemorrhagic fever virus database, a new platform for analyzing biothreat viruses.
PMID:22064861
SMART 7: recent updates to the protein domain annotation resource.
PMID:22053084
Identification and analysis of papillomavirus E2 protein binding sites in the human genome.
PMID:22031941
Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants.
PMID:22016070
ViPR: an open bioinformatics database and analysis resource for virology research.
PMID:22006842
Characterization of genetic variation and natural selection at the arylamine N-acetyltransferase genes in global human populations.
PMID:21995608
EcoBrowser: a web-based tool for visualizing transcriptome data of Escherichia coli.
PMID:21992408
Molecular Imaging and Contrast Agent Database (MICAD): evolution and progress.
PMID:21989943
The UCSC Genome Browser.
PMID:21975940
Knowledge sharing and collaboration in translational research, and the DC-THERA Directory.
PMID:21969471
Interactive metagenomic visualization in a Web browser.
PMID:21961884
Schizosaccharomyces pombe Ofd2 is a nuclear 2-oxoglutarate and iron dependent dioxygenase interacting with histones.
PMID:21949882
Therapeutic target database update 2012: a resource for facilitating target-oriented drug discovery.
PMID:21948793
Transient knockdown and overexpression reveal a developmental role for the zebrafish enosf1b gene.
PMID:21943404
The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database.
PMID:21933848
PubChem3D: a new resource for scientists.
PMID:21933373
Path to facilitate the prediction of functional amino acid substitutions in red blood cell disorders--a computational approach.
PMID:21931771
diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data.
PMID:21906294
The integrated web service and genome database for agricultural plants with biotechnology information.
PMID:21887015
Minimum information about a bioactive entity (MIABE).
PMID:21878981
RNA splicing in regulation of nitric oxide receptor soluble guanylyl cyclase.
PMID:21867767
Genome-enabled determination of amino acid biosynthesis in Xanthomonas campestris pv. campestris and identification of biosynthetic pathways for alanine, glycine, and isoleucine by 13C-isotopologue profiling.
PMID:21853248
A copy number variation morbidity map of developmental delay.
PMID:21841781
Cross-species protein sequence and gene structure prediction with fine-tuned Webscipio 2.0 and Scipio.
PMID:21798037
PanSNPdb: the Pan-Asian SNP genotyping database.
PMID:21731755
The Alzheimer's amyloid β-peptide (Aβ) binds a specific DNA Aβ-interacting domain (AβID) in the APP, BACE1, and APOE promoters in a sequence-specific manner: characterizing a new regulatory motif.
PMID:21699964
Computational methods for Gene Orthology inference.
PMID:21690100
deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.
PMID:21625565
Glioblastoma models reveal the connection between adult glial progenitors and the proneural phenotype.
PMID:21625383
GLAMM: Genome-Linked Application for Metabolic Maps.
PMID:21624891
Gametic phase disequilibrium between the syntenic multiallelic HTG4 and HMS3 markers widely used for parentage testing in Thoroughbred horses.
PMID:21607619
HMMER web server: interactive sequence similarity searching.
PMID:21593126
Mind the dbGAP: the application of data mining to identify biological mechanisms.
PMID:21540468
Shotgun sequencing of Yersinia enterocolitica strain W22703 (biotype 2, serotype O:9): genomic evidence for oscillation between invertebrates and mammals.
PMID:21453472
Protein function prediction: towards integration of similarity metrics.
PMID:21353529
GenBank.
PMID:21071399