Expressed Sequence Tags database
Names
More detailed information about this field from each metasource.
Expressed Sequence Tags database
metasource: Fairsharing.org
version: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
dbEST
metasource: Fairsharing.org
version: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
NCBI EST
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
dbEST database of EST sequences
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.046493
dbest
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.046493
Names
More detailed information about this field from each metasource.
Expressed Sequence Tags database
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
dbEST
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
NCBI EST
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
dbEST database of EST sequences
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.046493
dbest
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.046493
Other names: dbEST, NCBI EST, dbEST database of EST sequences, dbest
Names
More detailed information about this field from each metasource.
Expressed Sequence Tags database
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
dbEST
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
NCBI EST
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
dbEST database of EST sequences
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.046493
dbest
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.046493
The dbEST contains sequence data and other information on "single-pass" cDNA sequences, or "Expressed Sequence Tags", from a number of organisms. NCBI is in the process of merging EST and GSS records into the Nucleotide database, and the process is expected to be completed 2019. Accession.version and GI identifiers will not change during this process. For more information please see https://ncbiinsights.ncbi.nlm.nih.gov/2018/07/30/upcoming-changes-est-gss-databases/
Description
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The dbEST contains sequence data and other information on "single-pass" cDNA sequences, or "Expressed Sequence Tags", from a number of organisms. NCBI is in the process of merging EST and GSS records into the Nucleotide database, and the process is expected to be completed 2019. Accession.version and GI identifiers will not change during this process. For more information please see https://ncbiinsights.ncbi.nlm.nih.gov/2018/07/30/upcoming-changes-est-gss-databases/
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dbEST is a division of GenBank that contains sequence data and other information on "single-pass" cDNA sequences, or "Expressed Sequence Tags", from a number of organisms. Expressed Sequence Tags (ESTs) are short (usually about 300-500 bp), single-pass sequence reads from mRNA (cDNA). Typically they are produced in large batches. They represent a snapshot of genes expressed in a given tissue and/or at a given developmental stage. They are tags (some coding, others not) of expression for a given cDNA library. Most EST projects develop large numbers of sequences. These are commonly submitted to GenBank and dbEST as batches of dozens to thousands of entries, with a great deal of redundancy in the citation, submitter and library information. To improve the efficiency of the submission process for this type of data, we have designed a special streamlined submission process and data format. dbEST also includes sequences that are longer than the traditional ESTs, or are produced as single sequences or in small batches. Among these sequences are products of differential display experiments and RACE experiments. The thing that these sequences have in common with traditional ESTs, regardless of length, quality, or quantity, is that there is little information that can be annotated in the record. If a sequence is later characterized and annotated with biological features such as a coding region, 5'UTR, or 3'UTR, it should be submitted through the regular GenBank submissions procedure (via BankIt or Sequin), even if part of the sequence is already in dbEST. dbEST is reserved for single-pass reads. Assembled sequences should not be submitted to dbEST. GenBank will accept assembled EST submissions for the forthcoming TSA (Transcriptome Shotgun Assembly) division. The individual reads which make up the assembly should be submitted to dbEST, the Trace archive or the Short Read Archive (SRA) prior to the submission of the assemblies.
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
Division of GenBank that contains sequence data and other information on "single-pass" cDNA sequences, or "Expressed Sequence Tags", from a number of organisms.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.046493
Webpage:
https://www.ncbi.nlm.nih.gov/genbank/dbest/Webpage
More detailed information about this field from each metasource.
https://www.ncbi.nlm.nih.gov/genbank/dbest/
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
http://www.ncbi.nlm.nih.gov/dbEST/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.046493
Licence:
Name: NCBI Data Policies and DisclaimerLicence name
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NCBI Data Policies and Disclaimer
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
Public Domain
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
Licence URL
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http://www.ncbi.nlm.nih.gov/home/about/policies.shtml
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
https://www.nlm.nih.gov/copyright.html
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
dbEST--database for "expressed sequence tags"
PMID: 8401577
metasource: Fairsharing.org
version: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.046493
Publications
More detailed information about this field from each metasource.
dbEST--database for "expressed sequence tags"
PMID: 8401577
metasource: Fairsharing.org
version: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.046493
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dbEST--database for "expressed sequence tags"
PubMed citations: 462.
462 articles citing: dbEST--database for "expressed sequence tags"
Annotation and Molecular Characterisation of the TaIRO3 and TaHRZ Iron Homeostasis Genes in Bread Wheat (Triticum aestivum L.). PMID:33925484
Development and characterization of EST-SSR markers for Camellia reticulata. PMID:32477844
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
Limited utility of qPCR-based detection of tumor-specific circulating mRNAs in whole blood from clear cell renal cell carcinoma patients. PMID:32013938
Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives. PMID:31614509
Genome-Wide Analysis of Serine/Arginine-Rich Protein Family in Wheat and Brachypodium distachyon. PMID:31247888
The genomes of polyextremophilic cyanidiales contain 1% horizontally transferred genes with diverse adaptive functions. PMID:31149898
Identification of regulatory elements recapitulating early expression of L-plastin in the zebrafish enveloping layer and embryonic periderm. PMID:30940554
Mapping the dsRNA World. PMID:30824577
Universality of the DNA methylation codes in Eucaryotes. PMID:30655579
Computational study of putative functional variants in human kisspeptin. PMID:30647681
Vertebrate SLRP family evolution and the subfunctionalization of osteoglycin gene duplicates in teleost fish. PMID:30545285
Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing. PMID:30397543
De novo human genome assemblies reveal spectrum of alternative haplotypes in diverse populations. PMID:30072691
Changes in pituitary gene expression may underlie multiple domesticated traits in chickens. PMID:29789643
Tracing the evolution of the heterotrimeric G protein α subunit in Metazoa. PMID:29642851
Improving the annotation of the Heterorhabditis bacteriophora genome. PMID:29617768
Notos - a galaxy tool to analyze CpN observed expected ratios for inferring DNA methylation types. PMID:29587630
Intergenic disease-associated regions are abundant in novel transcripts. PMID:29284497
Cancer transcriptome profiling at the juncture of clinical translation. PMID:29279605
An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench). PMID:29273003
Electronic Northern Analysis of Genes and Modeling of Gene Networks Underlying Bovine Milk Fat Production. PMID:29250447
Sexual dimorphism of AMBRA1-related autistic features in human and mouse. PMID:28994820
Identification of genome-wide non-canonical spliced regions and analysis of biological functions for spliced sequences using Read-Split-Fly. PMID:28984182
Spatial regulation of monolignol biosynthesis and laccase genes control developmental and stress-related lignin in flax. PMID:28705193
Extrapolative microRNA precursor based SSR mining from tea EST database in respect to agronomic traits. PMID:28683768
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis. PMID:28680106
Enolase 1 stimulates glycolysis to promote chemoresistance in gastric cancer. PMID:28548950
TOMATOMICS: A Web Database for Integrated Omics Information in Tomato. PMID:28111364
Evolution of the angiopoietin-like gene family in teleosts and their role in skin regeneration. PMID:28086749
GeneBase 1.1: a tool to summarize data from NCBI gene datasets and its application to an update of human gene statistics. PMID:28025344
Gene transfers from diverse bacteria compensate for reductive genome evolution in the chromatophore of Paulinella chromatophora. PMID:27791007
Syrian Hamsters as a Small Animal Model for Emerging Infectious Diseases: Advances in Immunologic Methods. PMID:27722960
Transcriptome of the Caribbean stony coral Porites astreoides from three developmental stages. PMID:27485233
Targeting Cancer Metabolism - Revisiting the Warburg Effects. PMID:27437085
Bioinformatics resources for pollen. PMID:27271281
Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation. PMID:27049631
Missed, Not Missing: Phylogenomic Evidence for the Existence of Avian FoxP3. PMID:26938477
NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data. PMID:26848255
Genome-wide analysis of thapsigargin-induced microRNAs and their targets in NIH3T3 cells. PMID:26484121
PhytoPath: an integrative resource for plant pathogen genomics. PMID:26476449
Digital gene expression approach over multiple RNA-Seq data sets to detect neoblast transcriptional changes in Schmidtea mediterranea. PMID:25952370
Lineage-specific sequence evolution and exon edge conservation partially explain the relationship between evolutionary rate and expression level in A. thaliana. PMID:25930165
A-to-I RNA Editing: Current Knowledge Sources and Computational Approaches with Special Emphasis on Non-Coding RNA Molecules. PMID:25859542
High quality SNPs/Indels mining and characterization in ginger from ESTs data base. PMID:25848168
Inducing gene expression by targeting promoter sequences using small activating RNAs. PMID:25839046
Saturating light and not increased carbon dioxide under ocean acidification drives photosynthesis and growth in Ulva rigida (Chlorophyta). PMID:25750714
Factor VIII gene variants and inhibitor risk in African American hemophilia A patients. PMID:25617427
Novel transcription factor variants through RNA-sequencing: the importance of being "alternative". PMID:25590302
Sequencing, annotation and analysis of the Syrian hamster (Mesocricetus auratus) transcriptome. PMID:25398096
The sialotranscriptome of Amblyomma triste, Amblyomma parvum and Amblyomma cajennense ticks, uncovered by 454-based RNA-seq. PMID:25201527
Preferential association of a functional variant in complement receptor 2 with antibodies to double-stranded DNA. PMID:25180293
Association of eight EST-derived SNPs with carcass and meat quality traits in pigs. PMID:25081836
Effective automated feature construction and selection for classification of biological sequences. PMID:25033270
Interplay between the oxidoreductase PDIA6 and microRNA-322 controls the response to disrupted endoplasmic reticulum calcium homeostasis. PMID:24917591
Rediscovering medicinal plants' potential with OMICS: microsatellite survey in expressed sequence tags of eleven traditional plants with potent antidiabetic properties. PMID:24802971
A subtle alternative splicing event gives rise to a widely expressed human RNase k isoform. PMID:24797913
CancerEST: a web-based tool for automatic meta-analysis of public EST data. PMID:24715218
Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity. PMID:24682283
Improving mRNA 5' coding sequence determination in the mouse genome. PMID:24504701
Identification of RNA silencing components in soybean and sorghum. PMID:24387046
Integrating human omics data to prioritize candidate genes. PMID:24344781
Discovery of a metabolic alternative to the classical mevalonate pathway. PMID:24327557
miRNEST 2.0: a database of plant and animal microRNAs. PMID:24243848
Generation and analysis of a large-scale expressed sequence Tag database from a full-length enriched cDNA library of developing leaves of Gossypium hirsutum L. PMID:24146870
Comparative genomics reveals insight into virulence strategies of plant pathogenic oomycetes. PMID:24124466
Ancient origins of vertebrate-specific innate antiviral immunity. PMID:24109602
Presence-absence variation in A. thaliana is primarily associated with genomic signatures consistent with relaxed selective constraints. PMID:24072814
Lineage-specific duplications of Muroidea Faim and Spag6 genes and atypical accelerated evolution of the parental Spag6 gene. PMID:24071998
A directed approach for the identification of transcripts harbouring the spliced leader sequence and the effect of trans-splicing knockdown in Schistosoma mansoni. PMID:24037192
Systematic review of genome-wide gene expression studies of bipolar disorder. PMID:23945090
Evaluation of genome sequencing quality in selected plant species using expressed sequence tags. PMID:23922843
Evidence for deep phylogenetic conservation of exonic splice-related constraints: splice-related skews at exonic ends in the brown alga Ectocarpus are common and resemble those seen in humans. PMID:23902749
Detecting and comparing non-coding RNAs in the high-throughput era. PMID:23887659
A rapid transcriptome response is associated with desiccation resistance in aerially-exposed killifish embryos. PMID:23741328
Ectopic activation of germline and placental genes identifies aggressive metastasis-prone lung cancers. PMID:23698379
Partial venom gland transcriptome of a Drosophila parasitoid wasp, Leptopilina heterotoma, reveals novel and shared bioactive profiles with stinging Hymenoptera. PMID:23688557
In silico expressed sequence tag analysis in identification of probable diabetic genes as virtual therapeutic targets. PMID:23509765
Large scale chromosomal mapping of human microRNA structural clusters. PMID:23444140
Meta-analytical biomarker search of EST expression data reveals three differentially expressed candidates. PMID:23282184
TranSeqAnnotator: large-scale analysis of transcriptomic data. PMID:23282024
Helminth secretome database (HSD): a collection of helminth excretory/secretory proteins predicted from expressed sequence tags (ESTs). PMID:23281827
A transcriptomic analysis of Echinococcus granulosus larval stages: implications for parasite biology and host adaptation. PMID:23209850
GenBank. PMID:23193287
The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology. PMID:23193278
A complex set of sex pheromones identified in the cuttlefish Sepia officinalis. PMID:23118854
Development, characterization and experimental validation of a cultivated sunflower (Helianthus annuus L.) gene expression oligonucleotide microarray. PMID:23110046
Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis. PMID:23050870
Polymorphisms in the human tropoelastin gene modify in vitro self-assembly and mechanical properties of elastin-like polypeptides. PMID:23049958
RCDA: a highly sensitive and specific alternatively spliced transcript assembly tool featuring upstream consecutive exon structures. PMID:22971325
A gene family derived from transposable elements during early angiosperm evolution has reproductive fitness benefits in Arabidopsis thaliana. PMID:22969437
Bovine ncRNAs are abundant, primarily intergenic, conserved and associated with regulatory genes. PMID:22880061
Alternative splicing: a potential source of functional innovation in the eukaryotic genome. PMID:22811948
Expression sequence tag library derived from peripheral blood mononuclear cells of the chlorocebus sabaeus. PMID:22726727
Differential expression of genes and proteins between electric organ and skeletal muscle in the mormyrid electric fish Brienomyrus brachyistius. PMID:22723488
Extensive alternative polyadenylation during zebrafish development. PMID:22722342
How can microarrays unlock asthma? PMID:22500180
A quantitative atlas of polyadenylation in five mammals. PMID:22454233
Towards an efficient computational mining approach to identify EST-SSR markers. PMID:22419841
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data. PMID:22293517
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. PMID:22192575
GenBank. PMID:22144687
miRNEST database: an integrative approach in microRNA search and annotation. PMID:22135287
Developmental Regulation of Genes Encoding Universal Stress Proteins in Schistosoma mansoni. PMID:22084571
Annotation of the domestic dog genome sequence: finding the missing genes. PMID:22076420
Segtor: rapid annotation of genomic coordinates and single nucleotide variations using segment trees. PMID:22069465
FungiDB: an integrated functional genomics database for fungi. PMID:22064857
Type I keratin 17 protein is phosphorylated on serine 44 by p90 ribosomal protein S6 kinase 1 (RSK1) in a growth- and stress-dependent fashion. PMID:22006917
Comparative analysis of serine/arginine-rich proteins across 27 eukaryotes: insights into sub-family classification and extent of alternative splicing. PMID:21935421
CastorDB: a comprehensive knowledge base for Ricinus communis. PMID:21914200
Exome sequencing and analysis of induced pluripotent stem cells identify the cilia-related gene male germ cell-associated kinase (MAK) as a cause of retinitis pigmentosa. PMID:21825139
Positive Darwinian selection drives the evolution of the morphology-related gene, EPCAM, in particularly species-rich lineages of African cichlid fishes. PMID:21811860
Applications and implications of neutral versus non-neutral markers in molecular ecology. PMID:21747718
Spinning gland transcriptomics from two main clades of spiders (order: Araneae)--insights on their molecular, anatomical and behavioral evolution. PMID:21738742
Identification and validation of rice reference proteins for western blotting. PMID:21705388
Integration of expressed sequence tag data flanking predicted RNA secondary structures facilitates novel non-coding RNA discovery. PMID:21698286
RNA interference in marine and freshwater sponges: actin knockdown in Tethya wilhelma and Ephydatia muelleri by ingested dsRNA expressing bacteria. PMID:21679422
Mining for single nucleotide polymorphisms and insertions / deletions in expressed sequence tag libraries of oil palm. PMID:21670789
Identification and characterization of a novel ubiquitous nucleolar protein 'NARR' encoded by a gene overlapping the rab34 oncogene. PMID:21586586
The origins, evolution, and functional potential of alternative splicing in vertebrates. PMID:21551269
Molecular characterization and genomic mapping of the pathogenesis-related protein 1 (PR-1) gene family in hexaploid wheat (Triticum aestivum L.). PMID:21516334
Identification of drought-responsive universal stress proteins in viridiplantae. PMID:21423406
FEZ2 has acquired additional protein interaction partners relative to FEZ1: functional and evolutionary implications. PMID:21408165
Prediction of miRNA targets, affected proteins and their homologs in Glycine max. PMID:21364779
Benefits of random-priming: exhaustive survey of a cDNA library from lung tissue of a SARS patient. PMID:21328370
Molecular characterization of Xenopus lamin LIV reveals differences in the lamin composition of sperms in amphibians and mammals. PMID:21327107
Support vector machines-based identification of alternative splicing in Arabidopsis thaliana from whole-genome tiling arrays. PMID:21324185
Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts. PMID:21304167
The mining of toxin-like polypeptides from EST database by single residue distribution analysis. PMID:21281459
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences. PMID:21266472
Comparison of Current BLAST Software on Nucleotide Sequences. PMID:21243090
Development and application of bovine and porcine oligonucleotide arrays with protein-based annotation. PMID:21197395
The utility of mass spectrometry-based proteomic data for validation of novel alternative splice forms reconstructed from RNA-Seq data: a preliminary assessment. PMID:21172049
Crystal structure of a Josephin-ubiquitin complex: evolutionary restraints on ataxin-3 deubiquitinating activity. PMID:21118805
Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome. PMID:21092105
TESTLoc: protein subcellular localization prediction from EST data. PMID:21078192
GenBank. PMID:21071399
Predicted sub-populations in a marine shrimp proteome as revealed by combined EST and cDNA data from multiple Penaeus species. PMID:21067619
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. PMID:21051348
Genome-wide data-mining of candidate human splice translational efficiency polymorphisms (STEPs) and an online database. PMID:20948966
Discovery and characterization of nutritionally regulated genes associated with muscle growth in Atlantic salmon. PMID:20663983
Quantitative gene expression profiles in real time from expressed sequence tag databases. PMID:20635574
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. PMID:20626842
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences. PMID:20609256
Prevalence of alternative splicing choices in Arabidopsis thaliana. PMID:20525311
Identification and characterization of DSPIa, a novel isoform of human desmoplakin. PMID:20524011
The transcriptome of the early life history stages of the California Sea Hare Aplysia californica. PMID:20434970
Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. PMID:20433749
Detection of splice junctions from paired-end RNA-seq data by SpliceMap. PMID:20371516
Genomic analysis of expressed sequence tags in American black bear Ursus americanus. PMID:20338065
wDBTF: an integrated database resource for studying wheat transcription factor families. PMID:20298594
Genomics and bioinformatics resources for crop improvement. PMID:20208064
Two frequenins in Drosophila: unveiling the evolutionary history of an unusual neuronal calcium sensor (NCS) duplication. PMID:20170488
Template proteogenomics: sequencing whole proteins using an imperfect database. PMID:20164058
A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins. PMID:20047656
Microarray probes and probe sets. PMID:20036881
Large-scale identification of odorant-binding proteins and chemosensory proteins from expressed sequence tags in insects. PMID:20034407
Next generation transcriptomes for next generation genomes using est2assembly. PMID:20034392
TrichOME: a comparative omics database for plant trichomes. PMID:19939948
ANEXdb: an integrated animal ANnotation and microarray EXpression database. PMID:19936830
Polymorphisms of the apoptosis-associated gene DP1L1 (deleted in polyposis 1-like 1) in colon cancer and inflammatory bowel disease. PMID:19924442
GenBank. PMID:19910366
Evolutionary history of the HAP2/GCS1 gene and sexual reproduction in metazoans. PMID:19888453
Arsenic (+ 3 oxidation state) methyltransferase and the methylation of arsenicals in the invertebrate chordate Ciona intestinalis. PMID:19833739
The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections. PMID:19828078
ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery. PMID:19825183
Evaluation of combining several statistical methods with a flexible cutoff for identifying differentially expressed genes in pairwise comparison of EST sets. PMID:19812778
Structural and functional characteristics of xenavidin, the first frog avidin from Xenopus tropicalis. PMID:19788720
Many LINE1 elements contribute to the transcriptome of human somatic cells. PMID:19772661
A family of diverse Kunitz inhibitors from Echinococcus granulosus potentially involved in host-parasite cross-talk. PMID:19759914
Comparative analyses of plant transcription factor databases. PMID:19721806
Exon-trapping mediated by the human retrotransposon SVA. PMID:19635844
In-depth cDNA library sequencing provides quantitative gene expression profiling in cancer biomarker discovery. PMID:19591787
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data. PMID:19534735
Genomic analyses reveal a conserved glutathione homeostasis pathway in the invertebrate chordate Ciona intestinalis. PMID:19470804
Gene expression profiling in the rhesus macaque: methodology, annotation and data interpretation. PMID:19467334
WebGMAP: a web service for mapping and aligning cDNA sequences to genomes. PMID:19465381
Application of a new probabilistic model for mining implicit associated cancer genes from OMIM and medline. PMID:19458778
Databases and QSAR for cancer research. PMID:19458762
The bovine lactation genome: insights into the evolution of mammalian milk. PMID:19393040
Profile analysis and prediction of tissue-specific CpG island methylation classes. PMID:19383127
The origins of apicomplexan sequence innovation. PMID:19363216
Alternative polyadenylation variants of the RNA binding protein, HuR: abundance, role of AU-rich elements and auto-Regulation. PMID:19359363
The role of genomic data in the discovery, annotation and evolutionary interpretation of the interferon-lambda family. PMID:19300512
An integrated approach for the systematic identification and characterization of heart-enriched genes with unknown functions. PMID:19267916
Global expression profiling in epileptogenesis: does it add to the confusion? PMID:19243383
TRUNCATULIX--a data warehouse for the legume community. PMID:19210766
Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. PMID:19123937
Thiourea modulates the expression and activity profile of mtATPase under salinity stress in seeds of Brassica juncea. PMID:19033283
A salmonid EST genomic study: genes, duplications, phylogeny and microarrays. PMID:19014685
Marine organism cell biology and regulatory sequence discoveryin comparative functional genomics. PMID:19003267
Gene-L'EXPO: a tool to extract knowledge From transcriptomes and find 'Literature-Sparse' relationships between genes and tissues. PMID:18999036
In silico identification and molecular characterization of genes predominantly expressed in the fish oocyte. PMID:18947432
GenBank. PMID:18940867
CTdatabase: a knowledge-base of high-throughput and curated data on cancer-testis antigens. PMID:18838390
CleanEST: a database of cleansed EST libraries. PMID:18832365
Intervacuolar transport and unique topology of GRA14, a novel dense granule protein in Toxoplasma gondii. PMID:18765740
A general definition and nomenclature for alternative splicing events. PMID:18688268
Expression patterns of transcribed human endogenous retrovirus HERV-K(HML-2) loci in human tissues and the need for a HERV Transcriptome Project. PMID:18664271
NEIBank: genomics and bioinformatics resources for vision research. PMID:18648525
T2D-Db: an integrated platform to study the molecular basis of Type 2 diabetes. PMID:18605991
On the extent and origins of genic novelty in the phylum Nematoda. PMID:18596977
Increased levels of a unique post-translationally modified betaIVb-tubulin isotype in liver cancer. PMID:18570381
TiGER: a database for tissue-specific gene expression and regulation. PMID:18541026
Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions. PMID:18493612
Structural evidence for lack of inhibition of fish goose-type lysozymes by a bacterial inhibitor of lysozyme. PMID:18491152
Beyond tissueInfo: functional prediction using tissue expression profile similarity searches. PMID:18483083
Expression profile of the entire family of Adhesion G protein-coupled receptors in mouse and rat. PMID:18445277
annot8r: GO, EC and KEGG annotation of EST datasets. PMID:18400082
ISOL@: an Italian SOLAnaceae genomics resource. PMID:18387209
Rainbow smelt (Osmerus mordax) genomic library and EST resources. PMID:18386095
Exploring the transcriptome of the burrowing nematode Radopholus similis. PMID:18386064
Ornithine decarboxylase antizyme finder (OAF): fast and reliable detection of antizymes with frameshifts in mRNAs. PMID:18384676
Structural and functional genomics of tomato. PMID:18317508
Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors. PMID:18315854
The use of multiple displacement amplification to amplify complex DNA libraries. PMID:18285362
Accurate splice site prediction using support vector machines. PMID:18269701
Stress-induced expression of a novel variant of human fumarate hydratase (FH). PMID:18257390
Surviving extreme polar winters by desiccation: clues from Arctic springtail (Onychiurus arcticus) EST libraries. PMID:18154659
GenBank. PMID:18073190
An optimized procedure greatly improves EST vector contamination removal. PMID:17997864
SERpredict: detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements. PMID:17986331
Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21. PMID:17895424
Molecular cloning and characterization of the human RNase kappa, an ortholog of Cc RNase. PMID:17881363
In Silico characterization of phosphorylase kinase: evidence for an alternate intronic polyadenylation site in PHKG1. PMID:17692548
In silico gene expression analysis--an overview. PMID:17683638
Accurate mass measurements in proteomics. PMID:17649984
Annotated expressed sequence tags (ESTs) from pre-smolt Atlantic salmon (Salmo salar) in a searchable data resource. PMID:17605782
Under-representation of PolyA/PolyT tailed ESTs in human ESTdb: an obstacle to alternative polyadenylation inference. PMID:17597892
Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis. PMID:17577414
Identification and expression analysis of genes associated with bovine blastocyst formation. PMID:17559642
ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform. PMID:17545197
ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequences. PMID:17526512
Unexpected observations after mapping LongSAGE tags to the human genome. PMID:17504516
WebTraceMiner: a web service for processing and mining EST sequence trace files. PMID:17488839
Nonrandom variations in human cancer ESTs indicate that mRNA heterogeneity increases during carcinogenesis. PMID:17452638
Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence. PMID:17439966
Novel peptide identification from tandem mass spectra using ESTs and sequence database compression. PMID:17437027
The centromeric retrotransposons of rice are transcribed and differentially processed by RNA interference. PMID:17409063
A novel bioinformatics approach identifies candidate genes for the synthesis and feruloylation of arabinoxylan. PMID:17351055
Blast sampling for structural and functional analyses. PMID:17319945
Improving the Caenorhabditis elegans genome annotation using machine learning. PMID:17319737
A family of human microRNA genes from miniature inverted-repeat transposable elements. PMID:17301878
Depolarization and CaM kinase IV modulate NMDA receptor splicing through two essential RNA elements. PMID:17298178
Comparative genomics in cyprinids: common carp ESTs help the annotation of the zebrafish genome. PMID:17254304
Tissue-specific regulatory elements in mammalian promoters. PMID:17224917
The vertebrate phylotypic stage and an early bilaterian-related stage in mouse embryogenesis defined by genomic information. PMID:17222327
Biomphalaria glabrata transcriptome: identification of cell-signalling, transcriptional control and immune-related genes from open reading frame expressed sequence tags (ORESTES). PMID:17208299
GenBank. PMID:17202161
Systematic variation in mRNA 3'-processing signals during mouse spermatogenesis. PMID:17158511
Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST. PMID:17156431
TomatEST database: in silico exploitation of EST data to explore expression patterns in tomato species. PMID:17142232
Identification of alternative 5'/3' splice sites based on the mechanism of splice site competition. PMID:17098928
Mining expressed sequence tags identifies cancer markers of clinical interest. PMID:17078886
Babel's tower revisited: a universal resource for cross-referencing across annotation databases. PMID:17068090
The associated expression of Maspin and Bax proteins as a potential prognostic factor in intrahepatic cholangiocarcinoma. PMID:17067385
ProtoBee: hierarchical classification and annotation of the honey bee proteome. PMID:17065614
Evolution of glyoxylate cycle enzymes in Metazoa: evidence of multiple horizontal transfer events and pseudogene formation. PMID:17059607
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach. PMID:17010196
Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues. PMID:16982645
An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. PMID:16956407
Systematic identification of pseudogenes through whole genome expression evidence profiling. PMID:16945953
Automatic annotation of eukaryotic genes, pseudogenes and promoters. PMID:16925832
UniPep--a database for human N-linked glycosites: a resource for biomarker discovery. PMID:16901351
Shuffling of cis-regulatory elements is a pervasive feature of the vertebrate lineage. PMID:16859531
An open-access long oligonucleotide microarray resource for analysis of the human and mouse transcriptomes. PMID:16855282
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. PMID:16845086
High rate of chimeric gene origination by retroposition in plant genomes. PMID:16829590
Using ESTs to improve the accuracy of de novo gene prediction. PMID:16817966
SPODOBASE: an EST database for the lepidopteran crop pest Spodoptera. PMID:16796757
An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs. PMID:16757580
Learning interpretable SVMs for biological sequence classification. PMID:16723012
Origination of an X-linked testes chimeric gene by illegitimate recombination in Drosophila. PMID:16715176
Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs. PMID:16683036
In silico identification and comparative analysis of differentially expressed genes in human and mouse tissues. PMID:16626500
Analysis of 10,000 ESTs from lymphocytes of the cynomolgus monkey to improve our understanding of its immune system. PMID:16618371
Reference based annotation with GeneMapper. PMID:16600017
High expression of a cytokeratin-associated protein in many cancers. PMID:16585525
AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation. PMID:16556303
Identification of proangiogenic genes and pathways by high-throughput functional genomics: TBK1 and the IRF3 pathway. PMID:16537515
Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals. PMID:16526958
Quantitative comparison of EST libraries requires compensation for systematic biases in cDNA generation. PMID:16503995
GO-Diff: mining functional differentiation between EST-based transcriptomes. PMID:16480524
Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis. PMID:16469093
Two unrelated putative membrane-bound progestin receptors, progesterone membrane receptor component 1 (PGMRC1) and membrane progestin receptor (mPR) beta, are expressed in the rainbow trout oocyte and exhibit similar ovarian expression patterns. PMID:16457725
OligoSpawn: a software tool for the design of overgo probes from large unigene datasets. PMID:16401345
GenBank. PMID:16381837
Identification and characterization of a Penaeus monodon lymphoid cell-expressed receptor for the yellow head virus. PMID:16352551
ParPEST: a pipeline for EST data analysis based on parallel computing. PMID:16351758
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries. PMID:16351717
Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion. PMID:16344558
Towards compendia of negative genetic association studies: an example for Alzheimer disease. PMID:16341549
The catalytic subunit alpha' gene of human protein kinase CK2 (CSNK2A2): genomic organization, promoter identification and determination of Ets1 as a key regulator. PMID:16335532
Pscroph, a parasitic plant EST database enriched for parasite associated transcripts. PMID:16288663
A genome-wide survey demonstrates widespread non-linear mRNA in expressed sequences from multiple species. PMID:16237125
PineappleDB: an online pineapple bioinformatics resource. PMID:16202174
Diversification of stem cell molecular repertoire by alternative splicing. PMID:16183747
Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays. PMID:16107186
Global mRNA stability is not associated with levels of gene expression in Drosophila melanogaster but shows a negative correlation with codon bias. PMID:16044249
CLU: a new algorithm for EST clustering. PMID:16026600
Recent additions and improvements to the Onto-Tools. PMID:15980579
DNA microarrays--techniques and applications in microbial systems. PMID:15881400
Genome-wide assembly and analysis of alternative transcripts in mouse. PMID:15867436
A newly discovered human alpha-globin gene. PMID:15855277
Redefinition of Affymetrix probe sets by sequence overlap with cDNA microarray probes reduces cross-platform inconsistencies in cancer-associated gene expression measurements. PMID:15850491
Promoter features related to tissue specificity as measured by Shannon entropy. PMID:15833120
Computational analysis of 3'-ends of ESTs shows four classes of alternative polyadenylation in human, mouse, and rat. PMID:15741508
Evolutionarily conserved human targets of adenosine to inosine RNA editing. PMID:15731336
Protein coding potential of retroviruses and other transposable elements in vertebrate genomes. PMID:15716312
Integrating alternative splicing detection into gene prediction. PMID:15705189
Gene and alternative splicing annotation with AIR. PMID:15632090
An EST resource for cassava and other species of Euphorbiaceae. PMID:15630617
GenBank. PMID:15608212
PartiGeneDB--collating partial genomes. PMID:15608203
The extracellular matrix component WIF-1 is expressed during, and can modulate, retinal development. PMID:15555925
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). PMID:15489334
Systematic recovery and analysis of full-ORF human cDNA clones. PMID:15489330
Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific. PMID:15461794
Over 20% of human transcripts might form sense-antisense pairs. PMID:15356298
The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome. PMID:15292448
RNA editing of a miRNA precursor. PMID:15272117
SPOC: a widely distributed domain associated with cancer, apoptosis and transcription. PMID:15239844
ESTGenes: alternative splicing from ESTs in Ensembl. PMID:15123595
The Ensembl automatic gene annotation system. PMID:15123590
The functional genomic distribution of protein divergence in two animal phyla: coevolution, genomic conflict, and constraint. PMID:15123580
Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PMID:15103394
Detection and evaluation of intron retention events in the human transcriptome. PMID:15100430
Comparison of ESTs from juvenile and adult phases of the giant unicellular green alga Acetabularia acetabulum. PMID:15070428
High-throughput gene discovery in the rat. PMID:15060017
A guide to building image-centric databases. PMID:15043221
A novel marker of tissue junctions, collagen XXII. PMID:15016833
An unappreciated role for RNA surveillance. PMID:14759258
Transcriptome analysis of mouse stem cells and early embryos. PMID:14691545
The Mouse SAGE Site: database of public mouse SAGE libraries. PMID:14681462
NEMBASE: a resource for parasitic nematode ESTs. PMID:14681449
Update of NUREBASE: nuclear hormone receptor functional genomics. PMID:14681385
Xpro: database of eukaryotic protein-encoding genes. PMID:14681359
GenBank: update. PMID:14681350
Putative phenoloxidases in the tunicate Ciona intestinalis and the origin of the arthropod hemocyanin superfamily. PMID:14669024
FELINES: a utility for extracting and examining EST-defined introns and exons. PMID:14602934
An organism-specific method to rank predicted coding regions in Trypanosoma brucei. PMID:14530436
Murine bubblegum orthologue is a microsomal very long-chain acyl-CoA synthetase. PMID:14516277
MGAlignIt: A web service for the alignment of mRNA/EST and genomic sequences. PMID:12824360
Development and evaluation of an automated annotation pipeline and cDNA annotation system. PMID:12819153
Cc RNase: the Ceratitis capitata ortholog of a novel highly conserved protein family in metazoans. PMID:12799437
MHC class I-like genes in cattle, MHCLA, with similarity to genes encoding NK cell stimulatory ligands. PMID:12679856
Positional clustering of differentially expressed genes on human chromosomes 20, 21 and 22. PMID:12620117
A novel algorithm for computational identification of contaminated EST libraries. PMID:12560505
Discovery of the breast cancer gene BASE using a molecular approach to enrich for genes encoding membrane and secreted proteins. PMID:12538848
Heart-specific genes revealed by expressed sequence tag (EST) sampling. PMID:12537563
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data. PMID:12519986
GenBank. PMID:12519940
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. PMID:12502788
Gene expression profiling of embryo-derived stem cells reveals candidate genes associated with pluripotency and lineage specificity. PMID:12466296
Selecting for functional alternative splices in ESTs. PMID:12466287
SeqHound: biological sequence and structure database as a platform for bioinformatics research. PMID:12401134
Making sense of EST sequences by CLOBBing them. PMID:12398795
PRESTA: associating promoter sequences with information on gene expression. PMID:12225589
Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome. PMID:12213775
Novel human ZAKI-4 isoforms: hormonal and tissue-specific regulation and function as calcineurin inhibitors. PMID:12102656
Opposing roles of serine/threonine kinases MEKK1 and LOK in regulating the CD28 responsive element in T-cells. PMID:11903060
Finding your knockout: reverse genetics techniques for plants. PMID:11876476
Rapid screening for improved solubility of small human proteins produced as fusion proteins in Escherichia coli. PMID:11790841
The human (PEDB) and mouse (mPEDB) Prostate Expression Databases. PMID:11752298
GenBank. PMID:11752243
TissueInfo: high-throughput identification of tissue expression profiles and specificity. PMID:11691939
Navigating the human transcriptome. PMID:11592992
A computational scan for U12-dependent introns in the human genome sequence. PMID:11574683
Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data. PMID:11544195
Expression of respiratory syncytial virus-induced chemokine gene networks in lower airway epithelial cells revealed by cDNA microarrays. PMID:11533168
A large family of endosome-localized proteins related to sorting nexin 1. PMID:11485546
Genome-wide detection of alternative splicing in expressed sequences of human genes. PMID:11433032
Changes in global gene expression patterns during development and maturation of the rat kidney. PMID:11331749
Analysis of expressed sequence tags from two starvation, time-of-day-specific libraries of Neurospora crassa reveals novel clock-controlled genes. PMID:11238394
Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones. PMID:11139630
Gene discovery using computational and microarray analysis of transcription in the Drosophila melanogaster testis. PMID:11116097
A new set of Arabidopsis expressed sequence tags from developing seeds. The metabolic pathway from carbohydrates to seed oil. PMID:11115876
Analysis of canonical and non-canonical splice sites in mammalian genomes. PMID:11058137
A novel member of the netrin family, beta-netrin, shares homology with the beta chain of laminin: identification, expression, and functional characterization. PMID:11038171
Cloning of the gene encoding a novel integral membrane protein, mucolipidin-and identification of the two major founder mutations causing mucolipidosis type IV. PMID:11013137
An ordered comparative map of the cattle and human genomes. PMID:10984454
Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome. PMID:10954588
Classical oncogenes and tumor suppressor genes: a comparative genomics perspective. PMID:10935514
The Cancer Genome Anatomy Project: EST sequencing and the genetics of cancer progression. PMID:10933042
Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny. PMID:10908680
SAGEmap: a public gene expression resource. PMID:10899154
Patterns of variant polyadenylation signal usage in human genes. PMID:10899149
A third member of the RNA-specific adenosine deaminase gene family, ADAR3, contains both single- and double-stranded RNA binding domains. PMID:10836796
Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. PMID:10810093
Identification of novel imprinted transcripts in the Prader-Willi syndrome and Angelman syndrome deletion region: further evidence for regional imprinting control. PMID:10712201
Host sequences flanking the human T-cell leukemia virus type 1 provirus in vivo. PMID:10666261
The prostate expression database (PEDB): status and enhancements in 2000. PMID:10592228
XREFdb: cross-referencing the genetics and genes of mammals and model organisms. PMID:10592198
GenBank. PMID:10592170
d2_cluster: a validated method for clustering EST and full-length cDNAsequences. PMID:10568753
Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. PMID:10523523
Identification of abundantly expressed novel and conserved genes from the infective larval stage of Toxocara canis by an expressed sequence tag strategy. PMID:10456930
Informatic selection of a neural crest-melanocyte cDNA set for microarray analysis. PMID:10430933
A new mouse insertional mutation that causes sensorineural deafness and vestibular defects. PMID:10430593
A maize map standard with sequenced core markers, grass genome reference points and 932 expressed sequence tagged sites (ESTs) in a 1736-locus map. PMID:10388831
The Ubp6 family of deubiquitinating enzymes contains a ubiquitin-like domain: SUb. PMID:10386876
Isolation and characterization of a dual-substrate phosphodiesterase gene family: PDE10A. PMID:10359840
Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. PMID:10359783
Characterization and expression of the laminin gamma3 chain: a novel, non-basement membrane-associated, laminin chain. PMID:10225960
Identification, separation, and characterization of acyl-coenzyme A dehydrogenases involved in mitochondrial beta-oxidation in higher plants. PMID:10198089
Mammalian PIG-L and its yeast homologue Gpi12p are N-acetylglucosaminylphosphatidylinositol de-N-acetylases essential in glycosylphosphatidylinositol biosynthesis. PMID:10085243
Analysis of 148 kb of genomic DNA around the wnt1 locus of Fugu rubripes. PMID:10077531
Molecular identification of human G-substrate, a possible downstream component of the cGMP-dependent protein kinase cascade in cerebellar Purkinje cells. PMID:10051666
Mouse annexin V genomic organization includes an endogenous retrovirus. PMID:9854034
A novel heterogeneous nuclear ribonucleoprotein-like protein interacts with NS1 of the minute virus of mice. PMID:9847309
Disruption of the p70(s6k)/p85(s6k) gene reveals a small mouse phenotype and a new functional S6 kinase. PMID:9822608
Plant hormone perception and action: a role for G-protein signal transduction? PMID:9800205
Gene discovery through expressed sequence Tag sequencing in Trypanosoma cruzi. PMID:9784549
Computational methods for exon detection. PMID:9779421
A computer program for aligning a cDNA sequence with a genomic DNA sequence. PMID:9750195
Human and mouse Gpi1p homologues restore glycosylphosphatidylinositol membrane anchor biosynthesis in yeast mutants. PMID:9729469
Cloning and characterization of a cAMP-specific cyclic nucleotide phosphodiesterase. PMID:9671792
A member of a family of sulfate-activating enzymes causes murine brachymorphism. PMID:9671738
PED/PEA-15 gene controls glucose transport and is overexpressed in type 2 diabetes mellitus. PMID:9670003
Myb-related Schizosaccharomyces pombe cdc5p is structurally and functionally conserved in eukaryotes. PMID:9632794
Murine Nkg2d and Cd94 are clustered within the natural killer complex and are expressed independently in natural killer cells. PMID:9600963
Alternative gene form discovery and candidate gene selection from gene indexing projects. PMID:9521931
Expression, purification and characterization of a human serine-dependent phospholipase A2 with high specificity for oxidized phospholipids and platelet activating factor. PMID:9494101
Phosphate availability affects the thylakoid lipid composition and the expression of SQD1, a gene required for sulfolipid biosynthesis in Arabidopsis thaliana. PMID:9465123
The first step of glycosylphosphatidylinositol biosynthesis is mediated by a complex of PIG-A, PIG-H, PIG-C and GPI1. PMID:9463366
The genetic origin of mouse annexin VIII. PMID:9434938
Discovery of three genes specifically expressed in human prostate by expressed sequence tag database analysis. PMID:9419370
The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses. PMID:9389651
Mal3, the fission yeast homologue of the human APC-interacting protein EB-1 is required for microtubule integrity and the maintenance of cell form. PMID:9348288
IMAGE cDNA clones, UniGene clustering, and ACeDB: an integrated resource for expressed sequence information. PMID:9331373
From sequence analysis of three novel ascorbate peroxidases from Arabidopsis thaliana to structure, function and evolution of seven types of ascorbate peroxidase. PMID:9291097
Primary structure and tissue distribution of two novel proline-rich gamma-carboxyglutamic acid proteins. PMID:9256434
Brassica napus cDNAs encoding fatty acyl-CoA synthetase. PMID:9106514
The Caenorhabditis elegans gene unc-76 and its human homologs define a new gene family involved in axonal outgrowth and fasciculation. PMID:9096408
A conserved domain is present in different families of vesicular fusion proteins: a new superfamily. PMID:9096343
A comparison of expressed sequence tags (ESTs) to human genomic sequences. PMID:9092672
Embedding strategies for effective use of information from multiple sequence alignments. PMID:9070452
Cloning and characterization of HUPF1, a human homolog of the Saccharomyces cerevisiae nonsense mRNA-reducing UPF1 protein. PMID:9064659
Characterization of two scleroderma autoimmune antigens that copurify with human ribonuclease P. PMID:9037013
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. PMID:9023104
The Radiation Hybrid Database. PMID:9016508
The EMBL Nucleotide Sequence Database. PMID:9016493
The construction of Arabidopsis expressed sequence tag assemblies. A new resource to facilitate gene identification. PMID:8938416
Expressed sequence tags of Chinese cabbage flower bud cDNA. PMID:8787028
Isolation of a novel retinoic acid-responsive gene by selection of genomic fragments derived from CpG-island-enriched DNA. PMID:8754834
Identification and analysis of a functional human homolog of the SPT4 gene of Saccharomyces cerevisiae. PMID:8649394
Multiplex messenger assay: simultaneous, quantitative measurement of expression of many genes in the context of T cell activation. PMID:8628675
The European Bioinformatics Institute (EBI) databases. PMID:8594602
A single gene encodes two different transcripts for the ADP-glucose pyrophosphorylase small subunit from barley (Hordeum vulgare). PMID:8546676
Genomic organization and sequence of the human NRAMP gene: identification and mapping of a promoter region polymorphism. PMID:8529098
Yeast chromosome III: new gene functions. PMID:8313894
Linking yeast genetics to mammalian genomes: identification and mapping of the human homolog of CDC27 via the expressed sequence tag (EST) data base. PMID:8234252
SWAP pre-mRNA splicing regulators are a novel, ancient protein family sharing a highly conserved sequence motif with the prp21 family of constitutive splicing proteins. PMID:7971282
Human natural resistance-associated macrophage protein: cDNA cloning, chromosomal mapping, genomic organization, and tissue-specific expression. PMID:7964458
GenBank. PMID:7937042
Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. PMID:7846151
Arabidopsis TCH3 encodes a novel Ca2+ binding protein and shows environmentally induced and tissue-specific regulation. PMID:7827491
Partial sequencing and mapping of clones from two maize cDNA libraries. PMID:7811968
Isolation of DNA fragments from agarose gel by centrifugation. PMID:7519772
The chromo superfamily: new members, duplication of the chromo domain and possible role in delivering transcription regulators to chromatin. PMID:7501439
How is the Human Genome Project doing, and what have we learned so far? PMID:7479895
Ahead of schedule and under budget: the Genome Project passes its fifth birthday. PMID:7479891
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complementary dna
metasource: Fairsharing.org
version: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna sequencing assay
metasource: Fairsharing.org
version: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
rna
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
animals
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
fruits
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
genome
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
human
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
microorganisms
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
nucleotide
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
plants
metasource: re3data.org
version: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:03.046493
Tags
More detailed information about this field from each metasource.
complementary dna
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna sequencing assay
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: dbEST; Expressed Sequence Tags database; DOI: https://doi.org/10.25504/FAIRsharing.v9fya8; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:08 p.m.
dna
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
rna
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
animals
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
fruits
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
genome
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
human
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
microorganisms
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
nucleotide
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
plants
metasource: re3data.orgversion: re3data.org: Expressed Sequence Tags database; editing status 2021-12-17; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3FG8P last accessed: 2022-11-04
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:03.046493
complementary dna dna sequencing assay dna gene expression dna rna animals fruits genome human microorganisms nucleotide plants gene transcripts
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