ProtClustDB
Names
More detailed information about this field from each metasource.
ProtClustDB
metasource: Fairsharing.org
version: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
NCBI Protein Clusters
metasource: re3data.org
version: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
ProtClustDB
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
NCBI Protein Clusters
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
Other names: NCBI Protein Clusters
Names
More detailed information about this field from each metasource.
ProtClustDB
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
NCBI Protein Clusters
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.
Description
More detailed information about this field from each metasource.
ProtClustDB is a collection of related protein sequences (clusters) consisting of Reference Sequence proteins encoded by complete genomes. This database contains both curated and non-curated clusters.
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
The Entrez Protein Clusters database contains annotation information, publications, structures and analysis tools for related protein sequences encoded by complete genomes. The data available in the Protein Clusters Database is generated from prokaryotic genomic studies and is intended to assist researchers studying micro-organism evolution as well as other biological sciences. Available genomes include plants and viruses as well as organelles and microbial genomes.
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
Webpage:
http://www.ncbi.nlm.nih.gov/proteinclustersWebpage
More detailed information about this field from each metasource.
http://www.ncbi.nlm.nih.gov/proteinclusters
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
https://www.ncbi.nlm.nih.gov/proteinclusters
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
Licence:
Name: NCBI Data Policies and DisclaimerLicence name
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NCBI Data Policies and Disclaimer
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
other
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
http://www.ncbi.nlm.nih.gov/home/about/policies.shtml
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
https://www.ncbi.nlm.nih.gov/home/about/policies/
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
The National Center for Biotechnology Information's Protein Clusters Database
PMID: 18940865
metasource: Fairsharing.org
version: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
The National Center for Biotechnology Information's Protein Clusters Database
PMID: 18940865
metasource: Fairsharing.org
version: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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The National Center for Biotechnology Information's Protein Clusters Database
PubMed citations: 173.
173 articles citing: The National Center for Biotechnology Information's Protein Clusters Database
Vibrio salinus sp. nov., a marine nitrogen-fixing bacterium isolated from the lagoon sediment of an islet inside an atoll in the western Pacific Ocean. PMID:35908088
Streptococcus vulneris sp. nov., isolated from wound of patient with diabetic foot ulcer (DFU). PMID:35657449
The Importance of Shiga Toxin-Producing Escherichia coli O145:NM[H28]/H28 Infections in Argentina, 1998-2020. PMID:35336157
Williamsia soli sp. nov., an actinobacterium isolated from soil at a thermal power plant in Yantai, China. PMID:34966962
Characterization of a Secretory YML079-like Cupin Protein That Contributes to Sclerotinia sclerotiorum Pathogenicity. PMID:34946121
Sulfur cycling and host-virus interactions in Aquificales-dominated biofilms from Yellowstone's hottest ecosystems. PMID:34650231
Manual Annotation Studio (MAS): a collaborative platform for manual functional annotation of viral and microbial genomes. PMID:34627149
Streptococcus vaginalis sp. nov., a novel bacterial species isolated from vaginal swabs of a pregnant woman with diabetes. PMID:34417650
Draft Genome Sequences of 80 Salmonella enterica Serovar Infantis Strains Isolated from Food, Environmental, Human, and Veterinary Sources in Brazil. PMID:34137634
Survival of Salmonella Under Heat Stress is Associated with the Presence/Absence of CRISPR Cas Genes and Iron Levels. PMID:33738531
RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation. PMID:33270901
NCBI's Conserved Domain Database and Tools for Protein Domain Analysis. PMID:31851420
CDD/SPARCLE: the conserved domain database in 2020. PMID:31777944
Phylogenetic analysis revealed that Salmonella Typhimurium ST313 isolated from humans and food in Brazil presented a high genomic similarity. PMID:31728978
An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. PMID:31681429
A Putative Microcin Amplifies Shiga Toxin 2a Production of Escherichia coli O157:H7. PMID:31611289
Draft Genome Sequences of Four Antibiotic-Resistant Salmonella Strains Isolated from Australian Red Meat Animal Species. PMID:31467110
PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database. PMID:31267135
Whole-Genome Analysis of Halomonas sp. Soap Lake #7 Reveals It Possesses Putative Mrp Antiporter Operon Groups 1 and 2. PMID:31214690
Gcorn Plant: A Database for Retrieving Functional and Evolutionary Traits of Plant Genes. PMID:30971448
The golden death bacillus Chryseobacterium nematophagum is a novel matrix digesting pathogen of nematodes. PMID:30813925
Draft Genome Sequence of Ruminococcus sp. nov. B05, Isolated from Human Feces. PMID:30643888
Draft Genome Sequence of Blautia sp. Strain BCRC 81119, Isolated from Human Feces. PMID:30533876
A map of constrained coding regions in the human genome. PMID:30531870
Considerations for Optimization of High-Throughput Sequencing Bioinformatics Pipelines for Virus Detection. PMID:30262776
Comparative Genomic Analysis of Vibrio diabolicus and Six Taxonomic Synonyms: A First Look at the Distribution and Diversity of the Expanded Species. PMID:30158916
Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing. PMID:30102733
Draft Genome Sequence of the Antimicrobial-Producing Strain Paenibacillus elgii AC13. PMID:29954895
Draft Genome Sequences of 112 Salmonella enterica Serovar Dublin Strains Isolated from Humans and Animals in Brazil. PMID:29903808
Draft Genome Sequences of Two Salmonella Strains Isolated from Wild Animals on the Eastern Shore of Virginia. PMID:29748400
Draft Genome Sequences of 116 Campylobacter jejuni Strains Isolated from Humans, Animals, Food, and the Environment in Brazil. PMID:29674540
Draft Genome Sequences of 20 Salmonella enterica subsp. enterica Serovar Typhimurium Strains Isolated from Swine in Santa Catarina, Brazil. PMID:29674535
Draft Genome Sequence of Clostridium sp. Strain chh4-2 Isolated from Human Feces. PMID:29472336
Draft genome sequence of Venturia carpophila, the causal agent of peach scab. PMID:29213355
Genomic Variation and Evolution of Vibrio parahaemolyticus ST36 over the Course of a Transcontinental Epidemic Expansion. PMID:29138301
RefSeq: an update on prokaryotic genome annotation and curation. PMID:29112715
Draft Genome Sequence of Bacillus aryabhattai Strain PHB10, a Poly(3-Hydroxybutyrate)-Accumulating Bacterium Isolated from Domestic Sewerage. PMID:29025943
Microbial genome analysis: the COG approach. PMID:28968633
Draft Genome Sequences of 64 Salmonella enterica Serotype Enteritidis Isolates Obtained from Wild Mice. PMID:28883147
Insights into the Draft Genome Sequence of a Haitian Variant Vibrio cholerae Strain Isolated from a Clinical Setting in Kerala, South India. PMID:28883135
High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps. PMID:28860257
Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica. PMID:28824587
Draft Genome Sequences of Yersinia frederiksenii, Yersinia intermedia, and Yersinia kristensenii Strains from Brazil. PMID:28798182
Actinoalloteichus fjordicus sp. nov. isolated from marine sponges: phenotypic, chemotaxonomic and genomic characterisation. PMID:28770445
Draft Genome Sequences of 256 Salmonella enterica subsp. enterica Serovar Enteritidis Strains Isolated from Humans, Food, Chickens, and Farm Environments in Brazil. PMID:28705959
APRICOT: an integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins. PMID:28334975
Defining a Core Genome Multilocus Sequence Typing Scheme for the Global Epidemiology of Vibrio parahaemolyticus. PMID:28330888
High-Quality Genome Sequence of an Escherichia coli O157 Strain Carrying an mcr-1 Resistance Gene Isolated from a Patient in the United States. PMID:28302788
Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177T isolated from a marine sponge. PMID:28031775
Whole-Genome Sequencing Applied to the Molecular Epidemiology of Shiga Toxin-Producing Escherichia coli O157:H7 in Argentina. PMID:27908998
CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. PMID:27899674
InterPro in 2017-beyond protein family and domain annotations. PMID:27899635
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes. PMID:27899624
Draft Genome Sequences of One Marine and One Clinical Vibrio parahaemolyticus Strain, Both Isolated in Sweden. PMID:27789643
Draft Genome Sequences of Histamine- and Non-Histamine-Producing Photobacterium Strains. PMID:27660786
Draft Genome Sequences of 40 Salmonella enterica Serovar Typhimurium Strains Isolated from Humans and Food in Brazil. PMID:27660768
Novel Helicobacter species H.japonicum isolated from laboratory mice from Japan induces typhlocolitis and lower bowel carcinoma in C57BL/129 IL10-/- mice. PMID:27655833
Draft Genome Sequences of Histamine-Producing Morganella psychrotolerans Strains. PMID:27635011
QuaBingo: A Prediction System for Protein Quaternary Structure Attributes Using Block Composition. PMID:27610389
Evolution and Diversity of Listeria monocytogenes from Clinical and Food Samples in Shanghai, China. PMID:27499751
Draft Genome Sequences of Salmonella enterica subsp. enterica Serovars Typhimurium and Nottingham Isolated from Food Products. PMID:27445384
High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps. PMID:27365352
NCBI prokaryotic genome annotation pipeline. PMID:27342282
Whole Genome DNA Sequence Analysis of Salmonella subspecies enterica serotype Tennessee obtained from related peanut butter foodborne outbreaks. PMID:27258142
Helicobacter saguini, a Novel Helicobacter Isolated from Cotton-Top Tamarins with Ulcerative Colitis, Has Proinflammatory Properties and Induces Typhlocolitis and Dysplasia in Gnotobiotic IL-10-/- Mice. PMID:27245408
Virulence Gene Profiles and Clonal Relationships of Escherichia coli O26:H11 Isolates from Feedlot Cattle as Determined by Whole-Genome Sequencing. PMID:27107118
Draft Genome Sequence of an Environmental trh+ Vibrio parahaemolyticus K23 Strain Isolated from Kerala, India. PMID:27081143
A Nonautochthonous U.S. Strain of Vibrio parahaemolyticus Isolated from Chesapeake Bay Oysters Caused the Outbreak in Maryland in 2010. PMID:26994080
Towards the bridging of molecular genetics data across Xenopus species. PMID:26925848
Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25. PMID:26679598
COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps. PMID:26635392
Database resources of the National Center for Biotechnology Information. PMID:26615191
Complete Genome Sequence of Coriobacteriaceae Strain 68-1-3, a Novel Mucus-Degrading Isolate from the Swine Intestinal Tract. PMID:26450725
Isolation and characterization of a novel Helicobacter species, Helicobacter jaachi sp. nov., from common marmosets (Callithrix jaachus). PMID:26297446
Genome sequence of the soil bacterium Corynebacterium callunae type strain DSM 20147(T). PMID:26203323
Transfer of energy pathway genes in microbial enhanced biological phosphorus removal communities. PMID:26173980
Draft Genome Sequence of Salmonella enterica subsp. enterica Serovar Give, Isolated from an Imported Chili Powder Product. PMID:26139723
Ecological prevalence, genetic diversity, and epidemiological aspects of Salmonella isolated from tomato agricultural regions of the Virginia Eastern Shore. PMID:25999938
Draft Genome Sequences of Histamine-Producing Photobacterium kishitanii and Photobacterium angustum, Isolated from Albacore (Thunnus alalunga) and Yellowfin (Thunnus albacares) Tuna. PMID:25931609
Complete Genome Sequence of Paenibacillus polymyxa CF05, a Strain of Plant Growth-Promoting Rhizobacterium with Elicitation of Induced Systemic Resistance. PMID:25883277
Genome-wide methylation patterns in Salmonella enterica Subsp. enterica Serovars. PMID:25860355
Complete Genome Sequences of a Clinical Isolate and an Environmental Isolate of Vibrio parahaemolyticus. PMID:25814612
Complete Genome Sequence of Terribacillus aidingensis Strain MP602, a Moderately Halophilic Bacterium Isolated from Cryptomeria fortunei in Tianmu Mountain in China. PMID:25792050
Improving the consistency of domain annotation within the Conserved Domain Database. PMID:25767294
Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012-2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by whole-genome sequence analysis. PMID:25745421
Whole-Genome Sequences of 12 Clinical Strains of Listeria monocytogenes. PMID:25720683
Complete Sequences of Six IncA/C Plasmids of Multidrug-Resistant Salmonella enterica subsp. enterica Serotype Newport. PMID:25720681
Transoceanic spreading of pathogenic strains of Vibrio parahaemolyticus with distinctive genetic signatures in the recA gene. PMID:25679989
Cladograms with Path to Event (ClaPTE): a novel algorithm to detect associations between genotypes or phenotypes using phylogenies. PMID:25577610
Draft genome sequences of eight enterohepatic helicobacter species isolated from both laboratory and wild rodents. PMID:25428971
NCBI viral genomes resource. PMID:25428358
CDD: NCBI's conserved domain database. PMID:25414356
Database resources of the National Center for Biotechnology Information. PMID:25398906
Identification of antigenic proteins of the nosocomial pathogen Klebsiella pneumoniae. PMID:25333280
Rapid identification of novel antigens of Salmonella Enteritidis by microarray-based immunoscreening. PMID:25253911
Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11(T) (= DSM 44721(T)). PMID:25197436
Draft Genome Sequences of Clinical Vibrio parahaemolyticus Strains Isolated in Maryland (2010 to 2013). PMID:25103764
Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains. PMID:25013133
Comparative genomic analysis and virulence differences in closely related salmonella enterica serotype heidelberg isolates from humans, retail meats, and animals. PMID:24732280
Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity. PMID:24694712
Genome sequence of the marine bacterium Corynebacterium maris type strain Coryn-1(T) (= DSM 45190(T)). PMID:24501635
Genome Sequence of a Helicobacter pylori Strain Isolated from a Mexican Patient with Intestinal Gastric Cancer. PMID:24459275
Rapid construction of metabolic models for a family of Cyanobacteria using a multiple source annotation workflow. PMID:24369854
Draft Genome Sequence of Shewanella decolorationis S12, a Dye-Degrading Bacterium Isolated from a Wastewater Treatment Plant. PMID:24309738
Database resources of the National Center for Biotechnology Information. PMID:24259429
Amino acid residues involved in inactivation of the Escherichia coli multidrug resistance repressor MarR by salicylate, 2,4-dinitrophenol, and plumbagin. PMID:24111786
GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis. PMID:24096415
Draft Genome Sequences of Two Salmonella Strains from the SARA Collection, SARA64 (Muenchen) and SARA33 (Heidelberg), Provide Insight into Their Antibiotic Resistance. PMID:24092796
Draft Genome Sequences of Helicobacter pylori Strains Isolated from Regions of Low and High Gastric Cancer Risk in Colombia. PMID:24051318
The COMBREX project: design, methodology, and initial results. PMID:24013487
Genome Sequence of Staphylococcus massiliensis Strain S46, Isolated from the Surface of Healthy Human Skin. PMID:23929469
Complete Genome Sequences of Helicobacter pylori Rifampin-Resistant Strains. PMID:23833139
Phosphoproteomic analysis reveals the effects of PilF phosphorylation on type IV pilus and biofilm formation in Thermus thermophilus HB27. PMID:23828892
Biochemical Characterization of Hypothetical Proteins from Helicobacter pylori. PMID:23825549
Hidden Markov models for evolution and comparative genomics analysis. PMID:23762278
Rapid identification of novel immunodominant proteins and characterization of a specific linear epitope of Campylobacter jejuni. PMID:23734261
Genome Sequences of Two Emerging Non-O157 Shiga Toxin-Producing Escherichia coli Strains. PMID:23682138
Whole-Genome Sequences of Four Salmonella enterica Serotype Newport Strains from Humans. PMID:23661485
Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools. PMID:23547799
5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea. PMID:23514374
Draft Genome Sequences of Three Salmonella enterica Serotype Agona Strains from China. PMID:23469342
Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing. PMID:23409020
Genome sequence of the halotolerant bacterium Corynebacterium halotolerans type strain YIM 70093(T) (= DSM 44683(T)). PMID:23408721
On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004. PMID:23383127
MexXY multidrug efflux system of Pseudomonas aeruginosa. PMID:23233851
CDD: conserved domains and protein three-dimensional structure. PMID:23197659
Database resources of the National Center for Biotechnology Information. PMID:23193264
Dynamics of domain coverage of the protein sequence universe. PMID:23157439
Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity. PMID:23145189
Draft genome sequence of Rahnella aquatilis strain HX2, a plant growth-promoting rhizobacterium isolated from vineyard soil in Beijing, China. PMID:23144397
Thousands of missed genes found in bacterial genomes and their analysis with COMBREX. PMID:23111013
Genome sequence of Nitratireductor aquibiodomus strain RA22. PMID:23105054
Microbial virus genome annotation-mustering the troops to fight the sequence onslaught. PMID:23084289
Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource. PMID:23061897
Population diversity of ORFan genes in Escherichia coli. PMID:23034216
MESSA: MEta-Server for protein Sequence Analysis. PMID:23031578
Draft genome sequences of eight Salmonella enterica serotype newport strains from diverse hosts and locations. PMID:22933769
Current status and emerging role of glutathione in food grade lactic acid bacteria. PMID:22920585
Supervised protein family classification and new family construction. PMID:22876787
Predictive sequence analysis of the Candidatus Liberibacter asiaticus proteome. PMID:22815919
Comparative transcriptome analysis between planarian Dugesia japonica and other platyhelminth species. PMID:22747887
Fungal genome resources at NCBI. PMID:22737589
Activator role of the pneumococcal Mga-like virulence transcriptional regulator. PMID:22661692
PhenoLink--a web-tool for linking phenotype to ~omics data for bacteria: application to gene-trait matching for Lactobacillus plantarum strains. PMID:22559291
Complete DNA sequence analysis of enterohemorrhagic Escherichia coli plasmid pO157_2 in β-glucuronidase-positive E. coli O157:H7 reveals a novel evolutionary path. PMID:22522897
Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes. PMID:22502997
Genome sequence of Staphylococcus aureus VC40, a vancomycin- and daptomycin-resistant strain, to study the genetics of development of resistance to currently applied last-resort antibiotics. PMID:22461548
Genome sequence of extracellular-protease-producing Alishewanella jeotgali isolated from traditional Korean fermented seafood. PMID:22461542
High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach. PMID:22260654
Draft genome sequence of the virulent strain 01-B526 of the fish pathogen Aeromonas salmonicida. PMID:22247525
Solving the Problem: Genome Annotation Standards before the Data Deluge. PMID:22180819
Database resources of the National Center for Biotechnology Information. PMID:22140104
Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop. PMID:21994619
Genome sequence of Cronobacter sakazakii E899, a strain associated with human illness. PMID:21952538
PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species. PMID:21896772
Experimental annotation of post-translational features and translated coding regions in the pathogen Salmonella Typhimurium. PMID:21867535
Comparative genomics of Klebsiella pneumoniae strains with different antibiotic resistance profiles. PMID:21746949
A natural antisense transcript at the Huntington's disease repeat locus regulates HTT expression. PMID:21672921
Genome sequences of Listeria monocytogenes strains J1816 and J1-220, associated with human outbreaks. PMID:21551300
Genome sequence of the clinical O4:K12 serotype Vibrio parahaemolyticus strain 10329. PMID:21551294
The origin of a derived superkingdom: how a gram-positive bacterium crossed the desert to become an archaeon. PMID:21356104
Draft genome sequences of six Escherichia coli isolates from the stepwise model of emergence of Escherichia coli O157:H7. PMID:21317333
Entrez Gene: gene-centered information at NCBI. PMID:21115458
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. PMID:21097892
Database resources of the National Center for Biotechnology Information. PMID:21097890
PhEVER: a database for the global exploration of virus-host evolutionary relationships. PMID:21081560
MicroScope: a platform for microbial genome annotation and comparative genomics. PMID:20157493
Biochemical networks: the evolution of gene annotation. PMID:20016491
The impact of long-distance horizontal gene transfer on prokaryotic genome size. PMID:20007373
Database resources of the National Center for Biotechnology Information. PMID:19910364
The comprehensive microbial resource. PMID:19892825
Structural analysis of polarizing indels: an emerging consensus on the root of the tree of life. PMID:19706177
NCBI Reference Sequences: current status, policy and new initiatives. PMID:18927115
Tags:
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.org
version: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.org
version: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
polypeptide_region
metasource: Fairsharing.org
version: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
dna
metasource: re3data.org
version: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
bioinformatics
metasource: re3data.org
version: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
chloroplasts
metasource: re3data.org
version: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
genomics
metasource: re3data.org
version: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
nucleotide sequence
metasource: re3data.org
version: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
phylogeny
metasource: re3data.org
version: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
plasmids
metasource: re3data.org
version: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
molecular structure
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
structure
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
polypeptide_region
metasource: Fairsharing.orgversion: FAIRsharing.org: ProtClustDB; ProtClustDB; DOI: https://doi.org/10.25504/FAIRsharing.da493y; Last edited: June 15, 2021, 1:42 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
dna
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
bioinformatics
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
chloroplasts
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
genomics
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
nucleotide sequence
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
phylogeny
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
plasmids
metasource: re3data.orgversion: re3data.org: NCBI Protein Clusters; editing status 2021-10-06; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3W32N last accessed: 2022-11-04
molecular structure protein structure polypeptide region dna bioinformatics chloroplasts genomics nucleotide sequence phylogeny plasmids
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