A Mycobacterial Systems Resource for the Research Community.
PMID:33653882
Genome-Scale Mapping Reveals Complex Regulatory Activities of RpoN in Yersinia pseudotuberculosis.
PMID:33172972
Comparing time series transcriptome data between plants using a network module finding algorithm.
PMID:31164912
Sequence similarity searches for morphine biosynthesis enzymes in bacteria yield putative targets for understanding associations between infection and opiate administration.
PMID:31107204
Aerobic prokaryotes do not have higher GC contents than anaerobic prokaryotes, but obligate aerobic prokaryotes have.
PMID:30691392
Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
PMID:28922793
Transcriptologs: A Transcriptome-Based Approach to Predict Orthology Relationships.
PMID:28469416
Increased taxon sampling reveals thousands of hidden orthologs in flatworms.
PMID:28400424
Comprehensive mapping of the Helicobacter pylori NikR regulon provides new insights in bacterial nickel responses.
PMID:28393877
Identification of the RNA Pyrophosphohydrolase RppH of Helicobacter pylori and Global Analysis of Its RNA Targets.
PMID:27974459
Enhanced annotations and features for comparing thousands of Pseudomonas genomes in the Pseudomonas genome database.
PMID:26578582
Genome-Wide Identification of Genes Probably Relevant to the Uniqueness of Tea Plant (Camellia sinensis) and Its Cultivars.
PMID:26543846
An event-driven approach for studying gene block evolution in bacteria.
PMID:25717195
An orthology-based analysis of pathogenic protozoa impacting global health: an improved comparative genomics approach with prokaryotes and model eukaryote orthologs.
PMID:24960463
Physiological and transcriptional responses to osmotic stress of two Pseudomonas syringae strains that differ in epiphytic fitness and osmotolerance.
PMID:23955010
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis.
PMID:23203876
InnateDB: systems biology of innate immunity and beyond--recent updates and continuing curation.
PMID:23180781
Rapid phylogenetic and functional classification of short genomic fragments with signature peptides.
PMID:22925230
Association mapping in sunflower for Sclerotinia Head Rot resistance.
PMID:22708963
MycoRRdb: a database of computationally identified regulatory regions within intergenic sequences in mycobacterial genomes.
PMID:22563442
Genome of the cyanobacterium Microcoleus vaginatus FGP-2, a photosynthetic ecosystem engineer of arid land soil biocrusts worldwide.
PMID:21705610
Computational methods for Gene Orthology inference.
PMID:21690100
QuartetS: a fast and accurate algorithm for large-scale orthology detection.
PMID:21572104
Extremely variable conservation of γ-type small, acid-soluble proteins from spores of some species in the bacterial order Bacillales.
PMID:21317325
Analysis and comparison of the pan-genomic properties of sixteen well-characterized bacterial genera.
PMID:20942950
Pseudomonas Genome Database: improved comparative analysis and population genomics capability for Pseudomonas genomes.
PMID:20929876
Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development.
PMID:20860850
Phylogenetic and regulatory region analysis of Wnt5 genes reveals conservation of a regulatory module with putative implication in pancreas development.
PMID:20684756
The other side of comparative genomics: genes with no orthologs between the cow and other mammalian species.
PMID:20003425
Comparative transcriptomics in the Triticeae.
PMID:19558723
The bovine lactation genome: insights into the evolution of mammalian milk.
PMID:19393040
Algorithm of OMA for large-scale orthology inference.
PMID:19055798
Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa.
PMID:19047519
Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.
PMID:18978025
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes.
PMID:18845571
The Burkholderia Genome Database: facilitating flexible queries and comparative analyses.
PMID:18842600
InnateDB: facilitating systems-level analyses of the mammalian innate immune response.
PMID:18766178
PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.
PMID:18366802
MADIBA: a web server toolkit for biological interpretation of Plasmodium and plant gene clusters.
PMID:18307768
Predicting protein function with hierarchical phylogenetic profiles: the Gene3D Phylo-Tuner method applied to eukaryotic genomes.
PMID:18052542
Assessing the evolutionary rate of positional orthologous genes in prokaryotes using synteny data.
PMID:18047665
GntR family of regulators in Mycobacterium smegmatis: a sequence and structure based characterization.
PMID:17714599
BranchClust: a phylogenetic algorithm for selecting gene families.
PMID:17425803