TreeBase
Names
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TreeBase
metasource: Fairsharing.org
version: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
TreeBASE
metasource: re3data.org
version: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
a database of phylogenetic knowledge
metasource: re3data.org
version: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
TreeBase
metasource: Fairsharing.orgversion: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
TreeBASE
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
a database of phylogenetic knowledge
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
Other names: TreeBASE, a database of phylogenetic knowledge
Names
More detailed information about this field from each metasource.
TreeBase
metasource: Fairsharing.orgversion: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
TreeBASE
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
a database of phylogenetic knowledge
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa.
Description
More detailed information about this field from each metasource.
TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa.
metasource: Fairsharing.orgversion: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
TreeBASE is a relational database of phylogenetic information hosted by the State University of New York at Buffalo. TreeBASE is a community resource that stores phylogenetic trees and the data matrices used to generate them from published research papers. We encourage biologists to submit phylogenetic data that are either published or in press, especially if these data were not fully presented in the publication due to space limitations. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. Presently TreeBASE is being mirrored at the San Diego Supercomputer Center at UCSD.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa. Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in publications that are in preparation or in review can be submitted to TreeBASE but are only available to the authors, publication editors, or reviewers using a special access code.
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
Webpage:
https://www.treebase.orgWebpage
More detailed information about this field from each metasource.
https://www.treebase.org
metasource: Fairsharing.orgversion: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://www.treebase.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
https://www.treebase.org/treebase-web/home.html
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
Licence:
Name: CopyrightsLicence name
More detailed information about this field from each metasource.
Copyrights
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://treebase.org/treebase-web/dataMan.html
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment
PMID: 19426482
metasource: Fairsharing.org
version: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/9/1162
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications
More detailed information about this field from each metasource.
Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment
PMID: 19426482
metasource: Fairsharing.org
version: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/9/1162
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
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Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment
PubMed citations: 6.
6 articles citing: Improved data retrieval from TreeBASE via taxonomic and linguistic data enrichment
A compendium of transcription factor and Transcriptionally active protein coding gene families in cowpea (Vigna unguiculata L.). PMID:29166879
Beyond the "Code": A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora). PMID:28061024
A tale of two drug targets: the evolutionary history of BACE1 and BACE2. PMID:24381583
Evolution and dynamics of megaplasmids with genome sizes larger than 100 kb in the Bacillus cereus group. PMID:24295128
Diversity of Streptomyces spp. in Eastern Himalayan region - computational RNomics approach to phylogeny. PMID:22829729
Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish. PMID:22727144 - http://bioinformatics.oxfordjournals.org/cgi/content/abstract/19/9/1162
Tags:
Tags
More detailed information about this field from each metasource.
classification
metasource: Fairsharing.org
version: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
taxonomic classification
metasource: Fairsharing.org
version: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
genome annotation terms, ontologies and nomenclature
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
evolution
metasource: re3data.org
version: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
evolutionary relationship
metasource: re3data.org
version: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
genealocial tree
metasource: re3data.org
version: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
genetics
metasource: re3data.org
version: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
morphology
metasource: re3data.org
version: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
phylogenetics
metasource: re3data.org
version: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
phylogeography
metasource: re3data.org
version: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
taxonomy
metasource: re3data.org
version: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
classification
metasource: Fairsharing.orgversion: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
taxonomic classification
metasource: Fairsharing.orgversion: FAIRsharing.org: TreeBase; TreeBase; DOI: https://doi.org/10.25504/FAIRsharing.zcn4w4; Last edited: April 5, 2021, 9:55 a.m.; Last accessed: Jan 03 2022 7:08 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
genome annotation terms, ontologies and nomenclature
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
evolution
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
evolutionary relationship
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
genealocial tree
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
genetics
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
morphology
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
phylogenetics
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
phylogeography
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
taxonomy
metasource: re3data.orgversion: re3data.org: TreeBASE; editing status 2022-10-19; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3DK58 last accessed: 2022-11-04
classification taxonomic classification genomics genome annotation terms, ontologies and nomenclature evolution evolutionary relationship genealocial tree genetics morphology phylogenetics phylogeography taxonomy
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