DroID - Drosophila Interactions Database
Names
More detailed information about this field from each metasource.
DroID - Drosophila Interactions Database
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
DroID
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:21.214205
droid
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:21.214205
Names
More detailed information about this field from each metasource.
DroID - Drosophila Interactions Database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
DroID
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
droid
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
Names
More detailed information about this field from each metasource.
DroID - Drosophila Interactions Database
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
DroID
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
droid
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
DroID, the Drosophila Interactions Database, assembles gene and protein interaction data from a variety of sources into one easily accessible, comprehensive database. The database includes published and unpublished low and high throughput data sets, genetic interactions, and computationally predicted interactions. The predicted interactions are generated based on interactions found in other organisms. The database can be searched using gene and protein information available from Flybase. DroID also includes gene expression data that can be used to filter interaction data. DroID can be accessed through a standard web page or by using IM Browser, a program for exploring multiple data sets and for graphically mapping the interactions. Use of the IM Browser requires no downloads and minimal user configuration or training, thereby enabling rapid initial access to interaction data. All of the data in DroID can be freely downloaded in a variety of formats compatible with analysis tools. The database and IM Browser are accessible from http://www.droidb.org.
Description
More detailed information about this field from each metasource.
DroID, the Drosophila Interactions Database, assembles gene and protein interaction data from a variety of sources into one easily accessible, comprehensive database. The database includes published and unpublished low and high throughput data sets, genetic interactions, and computationally predicted interactions. The predicted interactions are generated based on interactions found in other organisms. The database can be searched using gene and protein information available from Flybase. DroID also includes gene expression data that can be used to filter interaction data. DroID can be accessed through a standard web page or by using IM Browser, a program for exploring multiple data sets and for graphically mapping the interactions. Use of the IM Browser requires no downloads and minimal user configuration or training, thereby enabling rapid initial access to interaction data. All of the data in DroID can be freely downloaded in a variety of formats compatible with analysis tools. The database and IM Browser are accessible from http://www.droidb.org.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Drosophila Interactions Database, is a comprehensive public resource for Drosophila gene and protein interactions. It contains genetic interactions and experimentally detected protein-protein interactions curated from the literature and from external databases, and predicted protein interactions based on experiments in other species. Protein interactions are annotated with experimental details and periodically updated confidence scores.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
Webpage:
http://www.droidb.org/Webpage
More detailed information about this field from each metasource.
http://www.droidb.org/
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
http://droidb.org/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
Publications:
Publications
More detailed information about this field from each metasource.
DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila
PMID: 21036869
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:21.214205
Publications
More detailed information about this field from each metasource.
DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila
PMID: 21036869
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:21.214205
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DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila
PubMed citations: 107.
107 articles citing: DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila
NAADP-binding proteins find their identity. PMID:34810081
Bow-tie architecture of gene regulatory networks in species of varying complexity. PMID:34102083
Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila. PMID:33879316
Natural variation in the regulation of neurodevelopmental genes modifies flight performance in Drosophila. PMID:33735180
The Genomic Architecture of Adaptation to Larval Malnutrition Points to a Trade-off with Adult Starvation Resistance in Drosophila. PMID:33677563
Transcription Factors Drive Opposite Relationships between Gene Age and Tissue Specificity in Male and Female Drosophila Gonads. PMID:33481021
Internetwork connectivity of molecular networks across species of life. PMID:33441907
Variation in Pleiotropic Hub Gene Expression Is Associated with Interspecific Differences in Head Shape and Eye Size in Drosophila. PMID:33386848
Deciphering cell-cell interactions and communication from gene expression. PMID:33168968
OutPredict: multiple datasets can improve prediction of expression and inference of causality. PMID:32321967
Essential gene prediction in Drosophila melanogaster using machine learning approaches based on sequence and functional features. PMID:32257045
Predicted Drosophila Interactome Resource and web tool for functional interpretation of differentially expressed genes. PMID:32103267
Meta-analysis of honey bee neurogenomic response links Deformed wing virus type A to precocious behavioral maturation. PMID:32080242
Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs. PMID:32047225
Candidate gene screen for potential interaction partners and regulatory targets of the Hox gene labial in the spider Parasteatoda tepidariorum. PMID:32036446
RNAInter in 2020: RNA interactome repository with increased coverage and annotation. PMID:31906603
Ancestral reconstruction of protein interaction networks. PMID:31658251
Insights into the Functions of LncRNAs in Drosophila. PMID:31546813
Mitochondrial genomic variation drives differential nuclear gene expression in discrete regions of Drosophila gene and protein interaction networks. PMID:31477008
Identification of genes underlying phenotypic plasticity of wing size via insulin signaling pathway by network-based analysis in Sogatella furcifera. PMID:31113376
modEnrichr: a suite of gene set enrichment analysis tools for model organisms. PMID:31069376
Adaptation and Conservation throughout the Drosophila melanogaster Life-Cycle. PMID:31028390
A Comprehensive Drosophila melanogaster Transcription Factor Interactome. PMID:30995488
The histone methyltransferase G9a regulates tolerance to oxidative stress-induced energy consumption. PMID:30860988
Genomic changes associated with adaptation to arid environments in cactophilic Drosophila species. PMID:30651071
Pleiotropy Modulates the Efficacy of Selection in Drosophila melanogaster. PMID:30590559
Transcriptional dynamics of microRNAs and their targets during Drosophila neurogenesis. PMID:30582411
Evolution of In Silico Strategies for Protein-Protein Interaction Drug Discovery. PMID:30082644
Cyclin G and the Polycomb Repressive complexes PRC1 and PR-DUB cooperate for developmental stability. PMID:29995890
dynGENIE3: dynamical GENIE3 for the inference of gene networks from time series expression data. PMID:29467401
Molecular Interaction Search Tool (MIST): an integrated resource for mining gene and protein interaction data. PMID:29155944
A proteomic atlas of insulin signalling reveals tissue-specific mechanisms of longevity assurance. PMID:28916541
FlyExpress 7: An Integrated Discovery Platform To Study Coexpressed Genes Using in Situ Hybridization Images in Drosophila. PMID:28667017
Drosophila melanogaster positive transcriptional elongation factors regulate metabolic and sex-biased expression in adults. PMID:28521739
An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts. PMID:28135269
Genomic Trajectories to Desiccation Resistance: Convergence and Divergence Among Replicate Selected Drosophila Lines. PMID:28007884
The BioGRID interaction database: 2017 update. PMID:27980099
RAID v2.0: an updated resource of RNA-associated interactions across organisms. PMID:27899615
Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach. PMID:27794560
Using FlyBase, a Database of Drosophila Genes and Genomes. PMID:27730573
The temporally controlled expression of Drongo, the fruit fly homolog of AGFG1, is achieved in female germline cells via P-bodies and its localization requires functional Rab11. PMID:27654348
Data Integration for Microarrays: Enhanced Inference for Gene Regulatory Networks. PMID:27600224
A centrosome interactome provides insight into organelle assembly and reveals a non-duplication role for Plk4. PMID:27558293
Long-Term Memory in Drosophila Is Influenced by Histone Deacetylase HDAC4 Interacting with SUMO-Conjugating Enzyme Ubc9. PMID:27182943
Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions. PMID:27099342
Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported. PMID:26873250
Genome-Wide Analysis Reveals Novel Regulators of Growth in Drosophila melanogaster. PMID:26751788
Cross-Study Comparison Reveals Common Genomic, Network, and Functional Signatures of Desiccation Resistance in Drosophila melanogaster. PMID:26733490
HitPredict version 4: comprehensive reliability scoring of physical protein-protein interactions from more than 100 species. PMID:26708988
Genetics on the Fly: A Primer on the Drosophila Model System. PMID:26564900
From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach. PMID:26562430
Genome-Wide Detection and Analysis of Multifunctional Genes. PMID:26436655
DAPPER: a data-mining resource for protein-protein interactions. PMID:26405458
Drosophila Cyclin G and epigenetic maintenance of gene expression during development. PMID:25995770
Temperature-Related Reaction Norms of Gene Expression: Regulatory Architecture and Functional Implications. PMID:25976350
As the fat flies: The dynamic lipid droplets of Drosophila embryos. PMID:25882628
Systemic organ wasting induced by localized expression of the secreted insulin/IGF antagonist ImpL2. PMID:25850671
The hub protein loquacious connects the microRNA and short interfering RNA pathways in mosquitoes. PMID:25765650
Temperature stress mediates decanalization and dominance of gene expression in Drosophila melanogaster. PMID:25719753
Systems Medicine: from molecular features and models to the clinic in COPD. PMID:25471042
The BioGRID interaction database: 2015 update. PMID:25428363
Genetic dissection of leukemia-associated IDH1 and IDH2 mutants and D-2-hydroxyglutarate in Drosophila. PMID:25398939
Drep-2 is a novel synaptic protein important for learning and memory. PMID:25392983
ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis. PMID:25348397
Transcriptional and epigenetic responses to mating and aging in Drosophila melanogaster. PMID:25344338
Transcription factor networks in Drosophila melanogaster. PMID:25242320
Integrating the interactome and the transcriptome of Drosophila. PMID:24913703
SoxNeuro orchestrates central nervous system specification and differentiation in Drosophila and is only partially redundant with Dichaete. PMID:24886562
Resources for functional genomics studies in Drosophila melanogaster. PMID:24653003
Review of biological network data and its applications. PMID:24465231
Extensive use of RNA-binding proteins in Drosophila sensory neuron dendrite morphogenesis. PMID:24347626
Integrating protein-protein interaction networks with phenotypes reveals signs of interactions. PMID:24240319
Integrating in silico resources to map a signaling network. PMID:24233784
Two rapidly evolving genes contribute to male fitness in Drosophila. PMID:24221639
Human intellectual disability genes form conserved functional modules in Drosophila. PMID:24204314
De novo ORFs in Drosophila are important to organismal fitness and evolved rapidly from previously non-coding sequences. PMID:24146629
Simple topological features reflect dynamics and modularity in protein interaction networks. PMID:24130468
A sampling framework for incorporating quantitative mass spectrometry data in protein interaction analysis. PMID:24093595
The conditional nature of genetic interactions: the consequences of wild-type backgrounds on mutational interactions in a genome-wide modifier screen. PMID:23935530
Purification and characterization of transcription factors. PMID:23832591
An extracellular interactome of immunoglobulin and LRR proteins reveals receptor-ligand networks. PMID:23827685
Mining breast cancer genes with a network based noise-tolerant approach. PMID:23799982
Integrative approaches for predicting protein function and prioritizing genes for complex phenotypes using protein interaction networks. PMID:23788799
Landscape of protein-protein interactions in Drosophila immune deficiency signaling during bacterial challenge. PMID:23749869
Viruses and antiviral immunity in Drosophila. PMID:23680639
The impact of trans-regulation on the evolutionary rates of metazoan proteins. PMID:23658220
Drosophila signal peptidase complex member Spase12 is required for development and cell differentiation. PMID:23573290
New components of Drosophila leg development identified through genome wide association studies. PMID:23560084
Sex-biased networks and nodes of sexually antagonistic conflict in Drosophila. PMID:23431497
Drosophila protein interaction map (DPiM): a paradigm for metazoan protein complex interactions. PMID:23222005
An evolutionarily conserved innate immunity protein interaction network. PMID:23209288
The BioGRID interaction database: 2013 update. PMID:23203989
Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions. PMID:23157382
Adaptive evolution and the birth of CTCF binding sites in the Drosophila genome. PMID:23139640
A model-based method for gene dependency measurement. PMID:22829898
Genetic annotation of gain-of-function screens using RNA interference and in situ hybridization of candidate genes in the Drosophila wing. PMID:22798488
The cis-regulatory code of Hox function in Drosophila. PMID:22781127
i-cisTarget: an integrative genomics method for the prediction of regulatory features and cis-regulatory modules. PMID:22718975
Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison. PMID:22647244
Phenotypic plasticity of the Drosophila transcriptome. PMID:22479193
Transcriptional activity and nuclear localization of Cabut, the Drosophila ortholog of vertebrate TGF-β-inducible early-response gene (TIEG) proteins. PMID:22359651
Robust non-linear differential equation models of gene expression evolution across Drosophila development. PMID:22260205
Evolution of biological interaction networks: from models to real data. PMID:22204388
A protein complex network of Drosophila melanogaster. PMID:22036573
Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. PMID:22028469
Molecular evolution of cyclin proteins in animals and fungi. PMID:21798004
A protein network-guided screen for cell cycle regulators in Drosophila. PMID:21548953
Tags:
Tags
More detailed information about this field from each metasource.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein-protein interactions
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:21.214205
protein interactions
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:21.214205
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:21.214205
protein interaction experiment
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:21.214205
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:21.214205
Tags
More detailed information about this field from each metasource.
metabolic and signaling pathways
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
protein-protein interactions
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
protein interactions
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
protein interaction experiment
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:21.214205
metabolic and signaling pathways protein-protein interactions molecular interactions, pathways and networks protein interaction gene expression protein interaction experiment mapping
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