Microbial Protein Interaction Database
Names
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Microbial Protein Interaction Database
metasource: Fairsharing.org
version: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
MPIDB
metasource: Fairsharing.org
version: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
The Microbial Protein Interaction Database
metasource: re3data.org
version: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Microbial Protein Interaction Database
metasource: Fairsharing.orgversion: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
MPIDB
metasource: Fairsharing.orgversion: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
The Microbial Protein Interaction Database
metasource: re3data.orgversion: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
Other names: MPIDB, The Microbial Protein Interaction Database
Names
More detailed information about this field from each metasource.
Microbial Protein Interaction Database
metasource: Fairsharing.orgversion: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
MPIDB
metasource: Fairsharing.orgversion: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
metasource: re3data.org
version: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
The Microbial Protein Interaction Database
metasource: re3data.orgversion: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
Description
More detailed information about this field from each metasource.
The microbial protein interaction database (MPIDB) provides physical microbial interaction data. The interactions are manually curated from the literature or imported from other databases, and are linked to supporting experimental evidence, as well as evidences based on interaction conservation, protein complex membership, and 3D domain contacts. This resource has been marked as Uncertain because its project home can no longer be found. Please get in touch if you have any information about this resource.
metasource: Fairsharing.orgversion: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
>>>!!!<<< as stated 2017-06-09 MPIDB is no longer available under URL http://www.jcvi.org/mpidb/about.php >>>!!!<<< The microbial protein interaction database (MPIDB) aims to collect and provide all known physical microbial interactions. Currently, 24,295 experimentally determined interactions among proteins of 250 bacterial species/strains can be browsed and downloaded. These microbial interactions have been manually curated from the literature or imported from other databases (IntAct, DIP, BIND, MINT) and are linked to 26,578 experimental evidences (PubMed ID, PSI-MI methods). In contrast to these databases, interactions in MPIDB are further supported by 68,346 additional evidences based on interaction conservation, protein complex membership, and 3D domain contacts (iPfam, 3did). We do not include (spoke/matrix) binary interactions infered from pull-down experiments.
metasource: re3data.orgversion: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
Webpage:
http://www.jcvi.org/cms/home/Webpage
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http://www.jcvi.org/cms/home/
metasource: re3data.orgversion: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
http://www.jcvi.org/mpidb/about.php
metasource: Fairsharing.orgversion: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Licence:
Name: CCLicence name
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CC
metasource: re3data.orgversion: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
Licence URL
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https://creativecommons.org/licenses/by/2.5/
metasource: re3data.orgversion: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
Publications:
Publications
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MPIDB: the microbial protein interaction database
PMID: 18556668
metasource: Fairsharing.org
version: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
Publications
More detailed information about this field from each metasource.
MPIDB: the microbial protein interaction database
PMID: 18556668
metasource: Fairsharing.org
version: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
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MPIDB: the microbial protein interaction database
PubMed citations: 52.
52 articles citing: MPIDB: the microbial protein interaction database
The Landscape of Virus-Host Protein-Protein Interaction Databases. PMID:35910656
ImitateDB: A database for domain and motif mimicry incorporating host and pathogen protein interactions. PMID:35487995
Network analysis of host-pathogen protein interactions in microbe induced cardiovascular diseases. PMID:35001887
Gentamicin-induced hearing loss: A retrospective study using the Food and Drug Administration Adverse Event Reporting System and a toxicological study using drug-gene network analysis. PMID:34401547
Exploration of databases and methods supporting drug repurposing: a comprehensive survey. PMID:32055842
Analysis of Differentially Expressed Genes in Coronary Artery Disease by Integrated Microarray Analysis. PMID:31881747
Structural and Computational Characterization of Disease-Related Mutations Involved in Protein-Protein Interfaces. PMID:30934865
MorCVD: A Unified Database for Host-Pathogen Protein-Protein Interactions of Cardiovascular Diseases Related to Microbes. PMID:30858555
The UCSC Genome Browser database: 2018 update. PMID:29106570
HPIDB 2.0: a curated database for host-pathogen interactions. PMID:27374121
PPIM: A Protein-Protein Interaction Database for Maize. PMID:26620522
Integrated inference and evaluation of host-fungi interaction networks. PMID:26300851
A reproducible approach to high-throughput biological data acquisition and integration. PMID:26157642
A review on computational systems biology of pathogen-host interactions. PMID:25914674
Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs. PMID:25887594
Probing the protein interaction network of Pseudomonas aeruginosa cells by chemical cross-linking mass spectrometry. PMID:25800553
Network-based proteomic approaches reveal the neurodegenerative, neuroprotective and pain-related mechanisms involved after retrograde axonal damage. PMID:25784190
Shared resources, shared costs--leveraging biocuration resources. PMID:25776020
Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study. PMID:25652942
Protein-protein interactions and genetic diseases: The interactome. PMID:24892209
A second-generation protein-protein interaction network of Helicobacter pylori. PMID:24627523
The binary protein-protein interaction landscape of Escherichia coli. PMID:24561554
The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases. PMID:24234451
Complementing the Eukaryotic Protein Interactome. PMID:23825550
Interfacing cellular networks of S. cerevisiae and E. coli: connecting dynamic and genetic information. PMID:23663484
Interactome3D: adding structural details to protein networks. PMID:23399932
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. PMID:23398680
STRING v9.1: protein-protein interaction networks, with increased coverage and integration. PMID:23203871
Proteomics-based methods for discovery, quantification, and validation of protein-protein interactions. PMID:23157382
Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction. PMID:23146171
Prediction and analysis of the protein interactome in Pseudomonas aeruginosa to enable network-based drug target selection. PMID:22848443
Studying protein complexes by the yeast two-hybrid system. PMID:22841565
NetAligner--a network alignment server to compare complexes, pathways and whole interactomes. PMID:22618871
Integrated inference and analysis of regulatory networks from multi-level measurements. PMID:22482944
Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. PMID:22453911
How to link ontologies and protein-protein interactions to literature: text-mining approaches and the BioCreative experience. PMID:22438567
Identifying gene interaction networks. PMID:22307715
Benchmarking of the 2010 BioCreative Challenge III text-mining competition by the BioGRID and MINT interaction databases. PMID:22151178
MINT, the molecular interaction database: 2012 update. PMID:22096227
Selection of organisms for the co-evolution-based study of protein interactions. PMID:21910884
Bio::Homology::InterologWalk--a Perl module to build putative protein-protein interaction networks through interolog mapping. PMID:21767381
Reactome pathway analysis to enrich biological discovery in proteomics data sets. PMID:21751369
The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods. PMID:21472436
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. PMID:21045058
sRNATarBase: a comprehensive database of bacterial sRNA targets verified by experiments. PMID:20843985
A community-curated consensual annotation that is continuously updated: the Bacillus subtilis centred wiki SubtiWiki. PMID:20157485
Pathema: a clade-specific bioinformatics resource center for pathogen research. PMID:19843611
Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins. PMID:19834901
SpaK/SpaR two-component system characterized by a structure-driven domain-fusion method and in vitro phosphorylation studies. PMID:19503843
DASMIweb: online integration, analysis and assessment of distributed protein interaction data. PMID:19502495
DASMI: exchanging, annotating and assessing molecular interaction data. PMID:19420069
MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions. PMID:18786976
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Tags
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curated information
metasource: Fairsharing.org
version: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein interaction
metasource: Fairsharing.org
version: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
small molecule
metasource: Fairsharing.org
version: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
bacteria
metasource: re3data.org
version: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
interologs
metasource: re3data.org
version: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
microbial interaction
metasource: re3data.org
version: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
species
metasource: re3data.org
version: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
curated information
metasource: Fairsharing.orgversion: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
protein interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
small molecule
metasource: Fairsharing.orgversion: FAIRsharing.org: MPIDB; Microbial Protein Interaction Database; DOI: https://doi.org/10.25504/FAIRsharing.eyjkws; Last edited: June 25, 2021, 2:45 p.m.; Last accessed: Jan 03 2022 7:07 p.m.
bacteria
metasource: re3data.orgversion: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
interologs
metasource: re3data.orgversion: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
microbial interaction
metasource: re3data.orgversion: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
species
metasource: re3data.orgversion: re3data.org: The Microbial Protein Interaction Database; editing status 2021-10-14; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3G899 last accessed: 2022-11-04
protein protein interaction small molecule bacteria interologs microbial interaction species
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