Tag: protein interaction experiment

The database of interacting protein (DIP) database stores experimentally determined interactions between proteins. It combines information from a variety of sources to create a single, consistent set of protein-protein interactions. The data stored w ...

VirHostNet 2.0 integrates an extensive and original literature-curated dataset of virus/virus and virus/host protein-protein interactions complemented with publicly available data.

The I2D (Interologous Interaction Database) is a database of known and predicted mammalian and eukaryotic protein-protein interactions (PPIs). It has been built by mapping high-throughput (HTP) data between species.

Stores full descriptions of interactions, molecular complexes and pathways; researchers are able to submit new records.

ACLAME is a database dedicated to the collection and classification of mobile genetic elements (MGEs) from various sources, comprising all known phage genomes, plasmids and transposons.

Database of protein orthologs that interact (interologs) and proteins with conserved regulatory relationships across species (regulogs). Contains data for C. elegans, Drosophila, Arabidopsis, and Yeast.

DroID, the Drosophila Interactions Database, assembles gene and protein interaction data from a variety of sources into one easily accessible, comprehensive database. The database includes published and unpublished low and high throughput data sets, ...

Bacteriome.org is a database integrating physical (protein-protein) and functional interactions within the context of an E. coli knowledgebase.

Known and predicted protein domain interactions observed in PDB entries,

Mimotope database, active site-mimicking peptides selected from phage-display libraries

A database of non-interacting proteins

Quality assessed protein-protein interactions in 9 species

Predicted Arabidopsis Interactome Resource

Arabidopsis thaliana Protein Interactome Database

Contains high- and low-throughput data relevant to phosphorylation events. It includes 6,225 low-throughput and 21,990 high-throughput interactions, from greater than 35,000 experiments.

CellTalkDB is a manually curated database of ligand-receptor interactions in humans and mice. CellTalkDB contains literature-supported ligand-receptor (LR) pairs for human and mouse, which are curated from protein-protein interactions (PPIs) in STRIN ...

BioConceptVec is a collection of concept embeddings on primary biological concepts mentioned in the biomedical literature.

OGT Protein Interaction Network (OGT-PIN) is a curated and comprehensive database of experimentally identified interaction proteins of OGT and its orthologues in multiple species studied in the past several decades.

A host-pathogen interactome database for deciphering crucial molecular networks of wheat-common bunt cross-talk mechanisms.

TUPDB (Target-Unrelated Peptide Data Bank) is a comprehensive database of target-unrelated peptides (TUPs) and TUP motifs. It contains extensive information extracted from research articles and public databases.

An Open-source Platform for Hosting, Visualizing and Analyzing Protein Interaction Data.

Semantic-based detection of redundancies to unify protein-protein interaction databases.

A Database of Host-Pathogen Protein-Protein Interactions and Annotation Features of the Bacteria Causing Huanglongbing HLB Disease.

The Postsynaptic Interaction Database is a comprehensive resource of the human postsynaptic (PS) binary protein-protein interactions. It contains experimental and computational evidence about interactions, along with structural and disease-related in ...

A Database of Alfalfa-Bacterial Stem Blight Protein-Protein Interactions Revealing the Molecular Features of the Disease-causing Bacteria.