PlnTFDB
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The Plant Transcription Factor Database is an integrative database that provides putatively complete sets of transcription factors (TFs) and other transcriptional regulators (TRs) in plant species whose genomes have been completely sequenced and annotated. TF or TR gene entries include information of expressed sequence tags, 3D protein structures of homologous proteins, domain architecture and cross-links to other computational resources online.
Description
More detailed information about this field from each metasource.
The Plant Transcription Factor Database is an integrative database that provides putatively complete sets of transcription factors (TFs) and other transcriptional regulators (TRs) in plant species whose genomes have been completely sequenced and annotated. TF or TR gene entries include information of expressed sequence tags, 3D protein structures of homologous proteins, domain architecture and cross-links to other computational resources online.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:32.269798
Webpage:
http://plntfdb.bio.uni-potsdam.de/Webpage
More detailed information about this field from each metasource.
http://plntfdb.bio.uni-potsdam.de/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:32.269798
Publications:
Publications
More detailed information about this field from each metasource.
PlnTFDB: updated content and new features of the plant transcription factor database
PMID: 19858103
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.269798
Publications
More detailed information about this field from each metasource.
PlnTFDB: updated content and new features of the plant transcription factor database
PMID: 19858103
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.269798
-
PlnTFDB: updated content and new features of the plant transcription factor database
PubMed citations: 307.
307 articles citing: PlnTFDB: updated content and new features of the plant transcription factor database
Gene-coexpression network analysis identifies specific modules and hub genes related to cold stress in rice. PMID:35365095
The comparisons of expression pattern reveal molecular regulation of fruit metabolites in S. nigrum and S. lycopersicum. PMID:35322121
Genome-Wide Analysis of the Banana WRKY Transcription Factor Gene Family Closely Related to Fruit Ripening and Stress. PMID:35270130
Co-expression network analyses of anthocyanin biosynthesis genes in Ruellia (Wild Petunias; Acanthaceae). PMID:35260074
Transcriptome profiling revealed candidate genes, pathways and transcription factors related to nitrogen utilization and excessive nitrogen stress in perennial ryegrass. PMID:35233054
Deciphering Molecular Mechanisms Involved in Salinity Tolerance in Guar (Cyamopsis tetragonoloba (L.) Taub.) Using Transcriptome Analyses. PMID:35161272
Understanding saffron biology using omics- and bioinformatics tools: stepping towards a better Crocus phenome. PMID:35106686
Comprehensive Transcriptome and Metabolic Profiling of Petal Color Development in Lycoris sprengeri. PMID:34925402
Genome-wide identification and expression analysis of the bZIP transcription factors, and functional analysis in response to drought and cold stresses in pear (Pyrus breschneideri). PMID:34886805
Transcriptome Profiling of the Salt Stress Response in the Leaves and Roots of Halophytic Eutrema salsugineum. PMID:34868259
Transcription Factor Action Orchestrates the Complex Expression Pattern of CRABS CLAW in Arabidopsis. PMID:34828269
Genome-wide analysis of the bZIP gene lineage in apple and functional analysis of MhABF in Malus halliana. PMID:34536142
The GRAS gene family and its roles in seed development in litchi (Litchi chinensis Sonn). PMID:34535087
Genome-wide identification and characterization of bZIP transcription factors and their expression profile under abiotic stresses in Chinese pear (Pyrus bretschneideri). PMID:34503442
Integrated Analysis of mRNA and Non-coding RNA Transcriptome in Pepper (Capsicum chinense) Hybrid at Seedling and Flowering Stages. PMID:34490032
Genome-wide comparative analyses of GATA transcription factors among seven Populus genomes. PMID:34400697
Evaluation of drought resistance and transcriptome analysis for the identification of drought-responsive genes in Iris germanica. PMID:34381085
Whole transcriptome analysis resulted in the identification of Chinese sprangletop (Leptochloa chinensis) genes involved in cyhalofop-butyl tolerance. PMID:34238252
Role of abscisic acid, osmolytes and heat shock factors in high temperature thermotolerance of Heliotropium thermophilum. PMID:33967468
Transcriptome Profiling of Cucumber (Cucumis sativus L.) Early Response to Pseudomonas syringae pv. lachrymans. PMID:33919557
Identification of Chlorophyll Metabolism- and Photosynthesis-Related Genes Regulating Green Flower Color in Chrysanthemum by Integrative Transcriptome and Weighted Correlation Network Analyses. PMID:33801035
Genome-wide identification of MIKC-type genes related to stamen and gynoecium development in Liriodendron. PMID:33753780
Genome-wide analysis of spatiotemporal expression patterns during rice leaf development. PMID:33750294
The Molecular Basis of Kale Domestication: Transcriptional Profiling of Developing Leaves Provides New Insights Into the Evolution of a Brassica oleracea Vegetative Morphotype. PMID:33747016
The Epigenetic Faces of ULTRAPETALA1. PMID:33719312
Transcription Factor ChbZIP1 from Alkaliphilic Microalgae Chlorella sp. BLD Enhancing Alkaline Tolerance in Transgenic Arabidopsis thaliana. PMID:33673599
De novo assembly and characterization of the first draft genome of quince (Cydonia oblonga Mill.). PMID:33589687
Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense). PMID:33588756
Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids. PMID:33552749
Barley Anther and Meiocyte Transcriptome Dynamics in Meiotic Prophase I. PMID:33510760
Rice protein-binding microarrays: a tool to detect cis-acting elements near promoter regions in rice. PMID:33475863
The transcriptional response to salicylic acid plays a role in Fusarium yellows resistance in Brassica rapa L. PMID:33459838
Transcriptional response of Asarum heterotropoides Fr. Schmidt var. mandshuricum (Maxim.) Kitag. leaves grown under full and partial daylight conditions. PMID:33407099
Physiological and transcriptomic analyses of yellow horn (Xanthoceras sorbifolia) provide important insights into salt and saline-alkali stress tolerance. PMID:33351842
CamRegBase: a gene regulation database for the biofuel crop, Camelina sativa. PMID:33306801
Overexpression of exogenous biuret hydrolase in rice plants confers tolerance to biuret toxicity. PMID:33283141
Prometheus, an omics portal for interkingdom comparative genomic analyses. PMID:33112870
Transcriptomic and metabolomic profiling reveals the effect of LED light quality on morphological traits, and phenylpropanoid-derived compounds accumulation in Sarcandra glabra seedlings. PMID:33076818
Unusual DNA-binding properties of the Arabidopsis thaliana WRKY50 transcription factor at target gene promoters. PMID:33006643
Regulation Mechanisms of Plant Basic Leucine Zippers to Various Abiotic Stresses. PMID:32973828
Transcriptomic analysis reveals somatic embryogenesis-associated signaling pathways and gene expression regulation in maize (Zea mays L.). PMID:32910317
Effects of Trace Irrigation at Different Depths on Transcriptome Expression Pattern in Cotton (G. hirsutum L.) Leaves. PMID:32802872
Genome-Wide Analysis Reveals Transcription Factors Regulated by Spider-Mite Feeding in Cucumber (Cucumis sativus). PMID:32796676
Transcriptome analysis of contrasting resistance to herbivory by Empoasca fabae in two shrub willow species and their hybrid progeny. PMID:32726362
Integrated transcriptomic and metabolomic analyses of yellow horn (Xanthoceras sorbifolia) in response to cold stress. PMID:32706804
Transcriptomic dataset reveals the molecular basis of genotypic variation in hexaploid wheat (T. aestivum L.) in response to Fe/Zn deficiency. PMID:32685638
Genome-Wide Analysis of Basic Helix-Loop-Helix Transcription Factors to Elucidate Candidate Genes Related to Fruit Ripening and Stress in Banana (Musa acuminata L. AAA Group, cv. Cavendish). PMID:32536932
Phylogenomic synteny network analyses reveal ancestral transpositions of auxin response factor genes in plants. PMID:32467718
Genome-Wide Analysis, Characterization, and Expression Profile of the Basic Leucine Zipper Transcription Factor Family in Pineapple. PMID:32455125
Genome-wide identification and functional analysis of ARF transcription factors in Brassica juncea var. tumida. PMID:32320456
Portal of Juglandaceae: A comprehensive platform for Juglandaceae study. PMID:32194971
Characterization of the bZIP Transcription Factor Family in Pepper (Capsicum annuum L.): CabZIP25 Positively Modulates the Salt Tolerance. PMID:32174937
Comparative Expression Profiling Reveals Genes Involved in Megasporogenesis. PMID:32054780
Transcriptional trajectories of anther development provide candidates for engineering male fertility in sorghum. PMID:31964983
Genome-Wide Identification and Characterization of the Mitochondrial Transcription Termination Factors (mTERFs) in Capsicum annuum L. PMID:31906076
Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition. PMID:31878092
The GATA transcription factor GNC plays an important role in photosynthesis and growth in poplar. PMID:31872214
Transcriptome landscape of Rafflesia cantleyi floral buds reveals insights into the roles of transcription factors and phytohormones in flower development. PMID:31851702
GenFam: A web application and database for gene family-based classification and functional enrichment analysis. PMID:31844835
Morphological and stage-specific transcriptome analyses reveal distinct regulatory programs underlying yam (Dioscorea alata L.) bulbil growth. PMID:31832647
Analysis of Centranthera grandiflora Benth Transcriptome Explores Genes of Catalpol, Acteoside and Azafrin Biosynthesis. PMID:31795510
AppleMDO: A Multi-Dimensional Omics Database for Apple Co-Expression Networks and Chromatin States. PMID:31695717
Overexpression of zmm28 increases maize grain yield in the field. PMID:31685622
Integration of Transcriptomics and Metabolomics for Pepper (Capsicum annuum L.) in Response to Heat Stress. PMID:31614571
New different origins and evolutionary processes of AP2/EREBP transcription factors in Taxus chinensis. PMID:31590655
Dynamic Changes in Genome-Wide Histone3 Lysine27 Trimethylation and Gene Expression of Soybean Roots in Response to Salt Stress. PMID:31552061
Reference gene and small RNA data from multiple tissues of Davidia involucrata Baill. PMID:31551451
Identification of Genes Differentially Expressed in Response to Cold in Pisum sativum Using RNA Sequencing Analyses. PMID:31443248
Gene networks underlying the early regulation of Paraburkholderia phytofirmans PsJN induced systemic resistance in Arabidopsis. PMID:31437216
Flavonoid Biosynthesis Is Likely More Susceptible to Elevation and Tree Age Than Other Branch Pathways Involved in Phenylpropanoid Biosynthesis in Ginkgo Leaves. PMID:31417595
Genome-wide identification and expression analysis of the trihelix transcription factor family in tartary buckwheat (Fagopyrum tataricum). PMID:31390980
Lipid remodeling regulator 1 (LRL1) is differently involved in the phosphorus-depletion response from PSR1 in Chlamydomonas reinhardtii. PMID:31350858
A set of AP2-like genes is associated with inflorescence branching and architecture in domesticated rice. PMID:31346594
Enhanced Maps of Transcription Factor Binding Sites Improve Regulatory Networks Learned from Accessible Chromatin Data. PMID:31345953
Transcription factors involved in abiotic stress responses in Maize (Zea mays L.) and their roles in enhanced productivity in the post genomics era. PMID:31328030
Musa balbisiana genome reveals subgenome evolution and functional divergence. PMID:31308504
Early Response of Radish to Heat Stress by Strand-Specific Transcriptome and miRNA Analysis. PMID:31284545
A web-based tool for the prediction of rice transcription factor function. PMID:31169887
Transcriptome and physiological analyses for revealing genes involved in wheat response to endoplasmic reticulum stress. PMID:31072347
Meta-analysis of drought-tolerant genotypes in Oryza sativa: A network-based approach. PMID:31059518
Genome-wide identification, structural and gene expression analysis of the bZIP transcription factor family in sweet potato wild relative Ipomoea trifida. PMID:31023242
croFGD: Catharanthus roseus Functional Genomics Database. PMID:30967897
Transcriptomic and genomic structural variation analyses on grape cultivars reveal new insights into the genotype-dependent responses to water stress. PMID:30809001
Genome wide characterization of barley NAC transcription factors enables the identification of grain-specific transcription factors exclusive for the Poaceae family of monocotyledonous plants. PMID:30592743
Comparative Transcriptomic and Physiological Analyses of Medicago sativa L. Indicates that Multiple Regulatory Networks Are Activated during Continuous ABA Treatment. PMID:30583536
Effect of Aspergillus flavus Fungal Elicitor on the Production of Terpenoid Indole Alkaloids in Catharanthus roseus Cambial Meristematic Cells. PMID:30544939
RAV1 Negatively Regulates Seed Development by Directly Repressing MINI3 and IKU2 in Arabidopsis. PMID:30518173
Evolution by duplication: paleopolyploidy events in plants reconstructed by deciphering the evolutionary history of VOZ transcription factors. PMID:30367626
Transcriptome-wide effects of expansin gene manipulation in etiolated Arabidopsis seedling. PMID:30341720
MGH: a genome hub for the medicinal plant maca (Lepidium meyenii). PMID:30339215
RNA sequencing and de novo assembly of Solanum trilobatum leaf transcriptome to identify putative transcripts for major metabolic pathways. PMID:30337583
Gene coexpression network analysis combined with metabonomics reveals the resistance responses to powdery mildew in Tibetan hulless barley. PMID:30297768
Genome-wide analysis of the plant-specific PLATZ proteins in maize and identification of their general role in interaction with RNA polymerase III complex. PMID:30290770
Comparative transcriptome meta-analysis of Arabidopsis thaliana under drought and cold stress. PMID:30192796
Transcriptome analysis of leaf senescence in red clover (Trifolium pratense L.). PMID:30150852
Early selection of bZIP73 facilitated adaptation of japonica rice to cold climates. PMID:30120236
Transcriptomic analysis of drought stress responses of sea buckthorn (Hippophae rhamnoidessubsp. sinensis) by RNA-Seq. PMID:30102736
Substantial Epigenetic Variation Causing Flower Color Chimerism in the Ornamental Tree Prunus mume Revealed by Single Base Resolution Methylome Detection and Transcriptome Sequencing. PMID:30087265
PbbHLH4 regulates floral monoterpene biosynthesis in Phalaenopsis orchids. PMID:29982590
Comprehensive metabolic and transcriptomic profiling of various tissues provide insights for saponin biosynthesis in the medicinally important Asparagus racemosus. PMID:29904061
Identification of Putative Precursor Genes for the Biosynthesis of Cannabinoid-Like Compound in Radula marginata. PMID:29868043
Combined Analysis of the Fruit Metabolome and Transcriptome Reveals Candidate Genes Involved in Flavonoid Biosynthesis in Actinidia arguta. PMID:29762529
Transcriptional and epigenetic adaptation of maize chromosomes in Oat-Maize addition lines. PMID:29579310
Transcriptome analysis of nitric oxide-responsive genes in upland cotton (Gossypium hirsutum). PMID:29513679
Transcriptomic signature of drought response in pearl millet (Pennisetum glaucum (L.) and development of web-genomic resources. PMID:29467369
Allelic variants of OsSUB1A cause differential expression of transcription factor genes in response to submergence in rice. PMID:29313187
Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. PMID:29312402
TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information. PMID:29272447
SlWRKY45, nematode-responsive tomato WRKY gene, enhances susceptibility to the root knot nematode; M. javanica infection. PMID:29271721
Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae. PMID:29216360
Stage-Specific Gene Profiling of Germinal Cells Helps Delineate the Mitosis/Meiosis Transition. PMID:29187566
Transcriptome profile analysis reveals the regulation mechanism of floral sex differentiation in Jatropha curcas L. PMID:29180629
A compendium of transcription factor and Transcriptionally active protein coding gene families in cowpea (Vigna unguiculata L.). PMID:29166879
Comprehensive transcriptome analysis reveals distinct regulatory programs during vernalization and floral bud development of orchardgrass (Dactylis glomerata L.). PMID:29166861
Transcriptome and Metabolome Analyses Provide Insights into the Occurrence of Peel Roughing Disorder on Satsuma Mandarin (Citrus unshiu Marc.) Fruit. PMID:29163622
De novo RNA sequencing transcriptome of Rhododendron obtusum identified the early heat response genes involved in the transcriptional regulation of photosynthesis. PMID:29059200
Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq. PMID:29047256
Expression patterns and promoter analyses of aluminum-responsive NAC genes suggest a possible growth regulation of rice mediated by aluminum, hormones and NAC transcription factors. PMID:29023561
Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. PMID:28922793
Genome-wide identification, phylogeny and expression analyses of SCARECROW-LIKE(SCL) genes in millet (Setaria italica). PMID:28878501
Genome-wide analysis and expression profiling of zinc finger homeodomain (ZHD) family genes reveal likely roles in organ development and stress responses in tomato. PMID:28874115
Identification of candidate genes involved in isoquinoline alkaloids biosynthesis in Dactylicapnos scandens by transcriptome analysis. PMID:28831066
Transcriptomic, biochemical and physio-anatomical investigations shed more light on responses to drought stress in two contrasting sesame genotypes. PMID:28821876
Transcriptional Responses of Creeping Bentgrass to 2,3-Butanediol, a Bacterial Volatile Compound (BVC) Analogue. PMID:28813015
Genome-wide analysis of basic helix-loop-helix (bHLH) transcription factors in Brachypodium distachyon. PMID:28810832
Desiccation tolerance in bryophytes: The dehydration and rehydration transcriptomes in the desiccation-tolerant bryophyte Bryum argenteum. PMID:28790328
Maize network analysis revealed gene modules involved in development, nutrients utilization, metabolism, and stress response. PMID:28764653
Genome-wide Analysis and Expression Divergence of the Trihelix family in Brassica Rapa: Insight into the Evolutionary Patterns in Plants. PMID:28743951
Divergent Evolutionary Patterns of NAC Transcription Factors Are Associated with Diversification and Gene Duplications in Angiosperm. PMID:28713414
Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei. PMID:28666414
Integration of transcriptomic and metabolic data reveals hub transcription factors involved in drought stress response in sunflower (Helianthus annuus L.). PMID:28639116
Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing. PMID:28638398
Generation, Annotation, and Analysis of a Large-Scale Expressed Sequence Tag Library from Arabidopsis pumila to Explore Salt-Responsive Genes. PMID:28638397
Lipid production in Nannochloropsis gaditana is doubled by decreasing expression of a single transcriptional regulator. PMID:28628130
Comparative Analysis of Transcriptomes in Rhizophoraceae Provides Insights into the Origin and Adaptive Evolution of Mangrove Plants in Intertidal Environments. PMID:28559911
Transcriptomic resources for the medicinal legume Mucuna pruriens: de novo transcriptome assembly, annotation, identification and validation of EST-SSR markers. PMID:28545396
Dynamic Cytology and Transcriptional Regulation of Rice Lamina Joint Development. PMID:28500269
ThNAC13, a NAC Transcription Factor from Tamarix hispida, Confers Salt and Osmotic Stress Tolerance to Transgenic Tamarix and Arabidopsis. PMID:28491072
Genome Wide Identification and Characterization of Apple bHLH Transcription Factors and Expression Analysis in Response to Drought and Salt Stress. PMID:28443104
Evidence for a Strong Correlation Between Transcription Factor Protein Disorder and Organismic Complexity. PMID:28430951
Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters. PMID:28341984
Transcriptomic Analysis Reveals Mechanisms of Sterile and Fertile Flower Differentiation and Development in Viburnum macrocephalum f. keteleeri. PMID:28298915
In silico identification of miRNAs and their target genes and analysis of gene co-expression network in saffron (Crocus sativus L.) stigma. PMID:28261627
Transcription Factor Functional Protein-Protein Interactions in Plant Defense Responses. PMID:28250372
Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation. PMID:28250106
Deep sequencing and transcriptome analyses to identify genes involved in secoiridoid biosynthesis in the Tibetan medicinal plant Swertia mussotii. PMID:28225035
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus. PMID:28196534
Transcriptome analysis of hexaploid hulless oat in response to salinity stress. PMID:28192458
ABA Suppresses Root Hair Growth via the OBP4 Transcriptional Regulator. PMID:28167701
Enriching Genomic Resources and Marker Development from Transcript Sequences of Jatropha curcas for Microgravity Studies. PMID:28154822
Genome-Wide Transcriptional Profiling to Elucidate Key Candidates Involved in Bud Burst and Rattling Growth in a Subtropical Bamboo (Dendrocalamus hamiltonii). PMID:28123391
Transcriptome Analysis of the Cf-12-Mediated Resistance Response to Cladosporium fulvum in Tomato. PMID:28105042
Characterization of Dof Transcription Factors and Their Responses to Osmotic Stress in Poplar (Populus trichocarpa). PMID:28095469
Integrated mRNA and microRNA analysis identifies genes and small miRNA molecules associated with transcriptional and post-transcriptional-level responses to both drought stress and re-watering treatment in tobacco. PMID:28068898
Plant genome and transcriptome annotations: from misconceptions to simple solutions. PMID:28062412
ccNET: Database of co-expression networks with functional modules for diploid and polyploid Gossypium. PMID:28053168
Genome analysis of Hibiscus syriacus provides insights of polyploidization and indeterminate flowering in woody plants. PMID:28011721
PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. PMID:27924042
Combined transcriptome and metabolome analyses to understand the dynamic responses of rice plants to attack by the rice stem borer Chilo suppressalis (Lepidoptera: Crambidae). PMID:27923345
Co-expression network analyses identify functional modules associated with development and stress response in Gossypium arboreum. PMID:27922095
Insights from the Cold Transcriptome and Metabolome of Dendrobium officinale: Global Reprogramming of Metabolic and Gene Regulation Networks during Cold Acclimation. PMID:27877182
Ancient microRNA families that regulate transcription factors are preferentially preserved during plant radiation. PMID:27874310
Novel Genomic and Evolutionary Insight of WRKY Transcription Factors in Plant Lineage. PMID:27853303
Membrane Proteomic Insights into the Physiology and Taxonomy of an Oleaginous Green Microalga. PMID:27837088
Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.). PMID:27738714
RNA-seq analysis of the transcriptional response to blue and red light in the extremophilic red alga, Cyanidioschyzon merolae. PMID:27614431
The Arabidopsis phytohormone crosstalk network involves a consecutive metabolic route and circular control units of transcription factors that regulate enzyme-encoding genes. PMID:27590055
De novo Sequencing and Transcriptome Analysis of Pinellia ternata Identify the Candidate Genes Involved in the Biosynthesis of Benzoic Acid and Ephedrine. PMID:27579029
A Transcriptional and Metabolic Framework for Secondary Wall Formation in Arabidopsis. PMID:27566165
Transcriptome analysis of smooth cordgrass (Spartina alterniflora Loisel), a monocot halophyte, reveals candidate genes involved in its adaptation to salinity. PMID:27542721
Transcriptomic Analysis of Multipurpose Timber Yielding Tree Neolamarckia cadamba during Xylogenesis Using RNA-Seq. PMID:27438485
Network and biosignature analysis for the integration of transcriptomic and metabolomic data to characterize leaf senescence process in sunflower. PMID:27295368
Deep-sequencing transcriptome analysis of field-grown Medicago sativa L. crown buds acclimated to freezing stress. PMID:27272950
The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence. PMID:27154758
Transcription factors in microalgae: genome-wide prediction and comparative analysis. PMID:27067009
Identification of Multiple Stress Responsive Genes by Sequencing a Normalized cDNA Library from Sea-Land Cotton (Gossypium barbadense L.). PMID:27031331
ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage. PMID:26968660
Sequencing, De novo Assembly, Functional Annotation and Analysis of Phyllanthus amarus Leaf Transcriptome Using the Illumina Platform. PMID:26858723
Comparative Transcriptome Analysis of Isoetes Sinensis Under Terrestrial and Submerged Conditions. PMID:26843780
Divergence of the bZIP Gene Family in Strawberry, Peach, and Apple Suggests Multiple Modes of Gene Evolution after Duplication. PMID:26770968
Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms. PMID:26744215
Bioinformatic landscapes for plant transcription factor system research. PMID:26719053
Physiological and transcriptional analyses of developmental stages along sugarcane leaf. PMID:26714767
The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres. PMID:26634818
Functional and expression analyses of transcripts based on full-length cDNAs of Sorghum bicolor. PMID:26546227
Reversible Burst of Transcriptional Changes during Induction of Crassulacean Acid Metabolism in Talinum triangulare. PMID:26530316
The NAC transcription factor family in maritime pine (Pinus Pinaster): molecular regulation of two genes involved in stress responses. PMID:26500018
Overexpression of mitochondrial uncoupling protein 1 (UCP1) induces a hypoxic response in Nicotiana tabacum leaves. PMID:26494730
Genomic Foundation of Starch-to-Lipid Switch in Oleaginous Chlorella spp. PMID:26486592
The auxin response factor gene family in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress. PMID:26442055
High-Resolution Profiling of a Synchronized Diurnal Transcriptome from Chlamydomonas reinhardtii Reveals Continuous Cell and Metabolic Differentiation. PMID:26432862
A Deluge of Complex Repeats: The Solanum Genome. PMID:26241045
Coexpression Network Analysis of Macronutrient Deficiency Response Genes in Rice. PMID:26206757
ANAC005 is a membrane-associated transcription factor and regulates vascular development in Arabidopsis. PMID:26178734
Global Analysis Reveals the Crucial Roles of DNA Methylation during Rice Seed Development. PMID:26145151
Prunus transcription factors: breeding perspectives. PMID:26124770
Genome-wide analysis, expression profile of heat shock factor gene family (CaHsfs) and characterisation of CaHsfA2 in pepper (Capsicum annuum L.). PMID:26088319
Transcriptome profiling provides new insights into the formation of floral scent in Hedychium coronarium. PMID:26084652
Selection for Improved Energy Use Efficiency and Drought Tolerance in Canola Results in Distinct Transcriptome and Epigenome Changes. PMID:26082400
An integrated database of wood-formation related genes in plants. PMID:26078228
Transcriptional regulation of the paper mulberry under cold stress as revealed by a comprehensive analysis of transcription factors. PMID:25928853
De novo assembly of a genome-wide transcriptome map of Vicia faba (L.) for transfer cell research. PMID:25914703
Upstream regulatory architecture of rice genes: summarizing the baseline towards genus-wide comparative analysis of regulatory networks and allele mining. PMID:25844119
Genetic and molecular characterization of submergence response identifies Subtol6 as a major submergence tolerance locus in maize. PMID:25806518
De novo characterization of fall dormant and nondormant alfalfa (Medicago sativa L.) leaf transcriptome and identification of candidate genes related to fall dormancy. PMID:25799491
Transcriptional profiling of Petunia seedlings reveals candidate regulators of the cold stress response. PMID:25784921
Genome-wide characterization of developmental stage- and tissue-specific transcription factors in wheat. PMID:25766308
Expression pattern and subcellular localization of the ovate protein family in rice. PMID:25760462
Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone. PMID:25750913
Pathways associated with lignin biosynthesis in lignomaniac jute fibres. PMID:25724692
Analysis of the Thinopyrum elongatum Transcriptome under Water Deficit Stress. PMID:25722968
System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation. PMID:25663847
Nonuniform gene expression pattern detected along the longitudinal axis in the matured rice leaf. PMID:25619793
Transcriptional analyses of natural leaf senescence in maize. PMID:25532107
A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons. PMID:25523176
Identification of transcription factors linked to cell cycle regulation in Arabidopsis. PMID:25482767
Transcriptome profiling shows gene regulation patterns in a flavonoid pathway in response to exogenous phenylalanine in Boesenbergia rotunda cell culture. PMID:25407215
Heat shock factors in carrot: genome-wide identification, classification, and expression profiles response to abiotic stress. PMID:25403331
Identification of transcription factor genes and their correlation with the high diversity of stramenopiles. PMID:25375671
PLAZA 3.0: an access point for plant comparative genomics. PMID:25324309
Genome-wide identification and expression analysis of TCP transcription factors in Gossypium raimondii. PMID:25322260
Transcriptome sequencing of rhizome tissue of Sinopodophyllum hexandrum at two temperatures. PMID:25287271
Maize and millet transcription factors annotated using comparative genomic and transcriptomic data. PMID:25261191
Global transcriptomics identification and analysis of transcriptional factors in different tissues of the paper mulberry. PMID:25213425
Switchgrass (Panicum virgatum L) flag leaf transcriptomes reveal molecular signatures of leaf development, senescence, and mineral dynamics. PMID:25173486
Analysis of BAC-end sequences in common bean (Phaseolus vulgaris L.) towards the development and characterization of long motifs SSRs. PMID:25164100
Genome-wide transcriptome analysis of genes involved in flavonoid biosynthesis between red and white strains of Magnolia sprengeri pamp. PMID:25150046
The potential of transcription factor-based genetic engineering in improving crop tolerance to drought. PMID:25118806
NAC transcription factor genes: genome-wide identification, phylogenetic, motif and cis-regulatory element analysis in pigeonpea (Cajanus cajan (L.) Millsp.). PMID:25108674
RNA-seq-mediated transcriptome analysis of actively growing and winter dormant shoots identifies non-deciduous habit of evergreen tree tea during winters. PMID:25090269
Single-base-resolution methylomes of Populus trichocarpa reveal the association between DNA methylation and drought stress. PMID:25080211
The Maize TFome--development of a transcription factor open reading frame collection for functional genomics. PMID:25053252
Genome-wide identification of transcription factors and transcription-factor binding sites in oleaginous microalgae Nannochloropsis. PMID:24965723
The American cranberry: first insights into the whole genome of a species adapted to bog habitat. PMID:24927653
C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses. PMID:24915771
MiRNAting control of DNA methylation. PMID:24845501
Genomewide analysis of LATERAL ORGAN BOUNDARIES Domain gene family in Zea mays. PMID:24840825
Exploiting a Reference Genome in Terms of Duplications: The Network of Paralogs and Single Copy Genes in Arabidopsis thaliana. PMID:24833233
Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism. PMID:24748044
Genome-wide analysis and expression profile of the bZIP transcription factor gene family in grapevine (Vitis vinifera). PMID:24725365
RNA-seq analysis of transcriptome and glucosinolate metabolism in seeds and sprouts of broccoli (Brassica oleracea var. italic). PMID:24586398
Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development. PMID:24581456
Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress. PMID:24489928
Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort, Marchantia polymorpha. PMID:24365221
Global expression profiling of low temperature induced genes in the chilling tolerant japonica rice Jumli Marshi. PMID:24349120
Fuzzy clustering of CPP family in plants with evolution and interaction analyses. PMID:24268301
Machine learning approaches distinguish multiple stress conditions using stress-responsive genes and identify candidate genes for broad resistance in rice. PMID:24235132
Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation. PMID:24224019
PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool. PMID:24219505
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. PMID:24174544
Genes and co-expression modules common to drought and bacterial stress responses in Arabidopsis and rice. PMID:24130868
Genome-wide survey on genomic variation, expression divergence, and evolution in two contrasting rice genotypes under high salinity stress. PMID:24121498
Comprehensive transcriptomic study on horse gram (Macrotyloma uniflorum): De novo assembly, functional characterization and comparative analysis in relation to drought stress. PMID:24059455
De novo transcriptome analysis of an imminent biofuel crop, Camelina sativa L. using Illumina GAIIX sequencing platform and identification of SSR markers. PMID:24002439
De novo transcriptomic analysis of hydrogen production in the green alga Chlamydomonas moewusii through RNA-Seq. PMID:23971877
Populus euphratica: the transcriptomic response to drought stress. PMID:23857471
Identification and characterization of RcMADS1, an AGL24 ortholog from the holoparasitic plant Rafflesia cantleyi Solms-Laubach (Rafflesiaceae). PMID:23840638
The auxin response factor transcription factor family in soybean: genome-wide identification and expression analyses during development and water stress. PMID:23810914
Genome-wide identification and evolutionary and expression analyses of MYB-related genes in land plants. PMID:23690543
RiceSRTFDB: a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis. PMID:23660286
Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly. PMID:23638091
Comparative analyses of nuclear proteome: extending its function. PMID:23637696
PlantGSEA: a gene set enrichment analysis toolkit for plant community. PMID:23632162
Plant core environmental stress response genes are systemically coordinated during abiotic stresses. PMID:23567274
Identification of genes related to agarwood formation: transcriptome analysis of healthy and wounded tissues of Aquilaria sinensis. PMID:23565705
Transcriptional profiling of rice early response to Magnaporthe oryzae identified OsWRKYs as important regulators in rice blast resistance. PMID:23544090
Genetic variation and expression diversity between grain and sweet sorghum lines. PMID:23324212
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice. PMID:23314754
TreeTFDB: an integrative database of the transcription factors from six economically important tree crops for functional predictions and comparative and functional genomics. PMID:23284086
Isolation and molecular characterization of thirteen R2R3-MYB transcription factors from Epimedium sagittatum. PMID:23271373
Identification of transcription factors potential related to brown planthopper resistance in rice via microarray expression profiling. PMID:23228240
The Rice Genome Knowledgebase (RGKbase): an annotation database for rice comparative genomics and evolutionary biology. PMID:23193278
RiceFREND: a platform for retrieving coexpressed gene networks in rice. PMID:23180784
Bioinformatic analysis of epigenetic and microRNA mediated regulation of drought responsive genes in rice. PMID:23145152
The rice B-box zinc finger gene family: genomic identification, characterization, expression profiling and diurnal analysis. PMID:23118960
Tissue specificity and differential expression of transcription factors in tomato provide hints of unique regulatory networks during fruit ripening. PMID:23073014
Systematic prediction of cis-regulatory elements in the Chlamydomonas reinhardtii genome using comparative genomics. PMID:22915576
A transcriptional dynamic network during Arabidopsis thaliana pollen development. PMID:22784627
Combinatorial signal integration by APETALA2/Ethylene Response Factor (ERF)-transcription factors and the involvement of AP2-2 in starvation response. PMID:22754341
Integration of bioinformatics and synthetic promoters leads to the discovery of novel elicitor-responsive cis-regulatory sequences in Arabidopsis. PMID:22744985
Molecular screening tools to study Arabidopsis transcription factors. PMID:22645547
Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum. PMID:22570076
Template-based structure prediction and classification of transcription factors in Arabidopsis thaliana. PMID:22549903
In silico analyses of pericycle cell populations reinforce their relation with associated vasculature in Arabidopsis. PMID:22527390
Identification of rice transcription factors associated with drought tolerance using the Ecotilling method. PMID:22348023
Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum). PMID:22334568
Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress. PMID:22321773
Tissue-specific whole transcriptome sequencing in castor, directed at understanding triacylglycerol lipid biosynthetic pathways. PMID:22319559
Systems analysis of a maize leaf developmental gradient redefines the current C4 model and provides candidates for regulation. PMID:22186372
Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid. PMID:22008187
Identification and analysis of common bean (Phaseolus vulgaris L.) transcriptomes by massively parallel pyrosequencing. PMID:21985325
The genome sequence of the North-European cucumber (Cucumis sativus L.) unravels evolutionary adaptation mechanisms in plants. PMID:21829493
Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. PMID:21792744
In silico analysis of transcription factor repertoires and prediction of stress-responsive transcription factors from six major gramineae plants. PMID:21729923
Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing. PMID:21729267
Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. PMID:21653784
Genome-wide comparison of two poplar genotypes with different growth rates. PMID:21614644
Dynamic regulation of H3K27 trimethylation during Arabidopsis differentiation. PMID:21490956
ORS1, an H₂O₂-responsive NAC transcription factor, controls senescence in Arabidopsis thaliana. PMID:21303842
LUX ARRHYTHMO encodes a nighttime repressor of circadian gene expression in the Arabidopsis core clock. PMID:21236673
Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice. PMID:21226959
PlantTFDB 2.0: update and improvement of the comprehensive plant transcription factor database. PMID:21097470
AGRIS: the Arabidopsis Gene Regulatory Information Server, an update. PMID:21059685
ProFITS of maize: a database of protein families involved in the transduction of signalling in the maize genome. PMID:20955618
Changes in transcript abundance in Chlamydomonas reinhardtii following nitrogen deprivation predict diversion of metabolism. PMID:20935180
Do transcription factors play special roles in adaptive variation? PMID:20921174
Genome-wide phylogenetic comparative analysis of plant transcriptional regulation: a timeline of loss, gain, expansion, and correlation with complexity. PMID:20644220
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plant biology
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.269798
transcription factors and regulatory sites
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version: extracted_at: 2022-11-04T11:33:32.269798
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.269798
gene and protein families
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.269798
molecular interactions, pathways and networks
metasource: bio.tools
version: extracted_at: 2022-11-04T11:33:32.269798
Tags
More detailed information about this field from each metasource.
plant biology
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:32.269798
transcription factors and regulatory sites
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:32.269798
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:32.269798
gene and protein families
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:32.269798
molecular interactions, pathways and networks
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:33:32.269798
plant biology transcription factors and regulatory sites gene expression gene and protein families molecular interactions, pathways and networks
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