FGDB
Names
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FGDB
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2021-04-07T11:50:35.288810
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
fgdb
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
Names
More detailed information about this field from each metasource.
FGDB
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
fgdb
metasource: bio.toolsversion: extracted_at: 2021-04-07T12:00:58.205472
Names
More detailed information about this field from each metasource.
FGDB
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
fgdb
metasource: bio.toolsversion: extracted_at: 2021-04-07T12:00:58.205472
Fusarium graminearum Genome Database (FGDB) is a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat and barley. FGDB provides information on two gene sets independently derived by automated annotation of the F.graminearum genome sequence. A complete manually revised gene set will be completed within the near future. The initial results of systematic manual correction of gene calls are already part of the current gene set. The database can be accessed to retrieve information from bioinformatics analyses and functional classifications of the proteins. The data are also organized in the well established MIPS catalogs and novel query techniques are available to search the data. The comprehensive set of gene calls was also used for the design of an Affymetrix GeneChip. The resource is accessible on http://mips.gsf.de/genre/proj/fusarium/.
Description
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Fusarium graminearum Genome Database (FGDB) is a comprehensive genome database on one of the most devastating fungal plant pathogens of wheat and barley. FGDB provides information on two gene sets independently derived by automated annotation of the F.graminearum genome sequence. A complete manually revised gene set will be completed within the near future. The initial results of systematic manual correction of gene calls are already part of the current gene set. The database can be accessed to retrieve information from bioinformatics analyses and functional classifications of the proteins. The data are also organized in the well established MIPS catalogs and novel query techniques are available to search the data. The comprehensive set of gene calls was also used for the design of an Affymetrix GeneChip. The resource is accessible on http://mips.gsf.de/genre/proj/fusarium/.
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
The MIPS Fusarium graminearum Genome Database (FGDB) is a comprehensive genome database for Fusarium graminearum. The current version of FGDB v3.1 provides information on the full manually revised gene set based on the Broad Institute assembly FG3 genome sequence. The database serves as a convenient entry point to explore expression data results and to obtain information on the Affymetrix GeneChip probe sets.
metasource: bio.toolsversion: extracted_at: 2021-04-07T12:00:58.205472
Webpage:
http://bioinformatik.wzw.tum.de/index.php?id=63&L=1Webpage
More detailed information about this field from each metasource.
http://bioinformatik.wzw.tum.de/index.php?id=63&L=1
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
http://mips.gsf.de/genre/proj/FGDB/
metasource: bio.toolsversion: extracted_at: 2021-04-07T12:00:58.205472
Publications:
Publications
More detailed information about this field from each metasource.
FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum
PMID: 21051345
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
Publications
More detailed information about this field from each metasource.
FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum
PMID: 21051345
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
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FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum
PubMed citations: 47.
47 articles citing: FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum
Infection cushions of Fusarium graminearum are fungal arsenals for wheat infection. PMID:32573086
Pathogenicity and Virulence Factors of Fusarium graminearum Including Factors Discovered Using Next Generation Sequencing Technologies and Proteomics. PMID:32098375
Biochemical Characterization of the Fusarium graminearum Candidate ACC-Deaminases and Virulence Testing of Knockout Mutant Strains. PMID:31552072
Fusarium Toxins in Chinese Wheat since the 1980s. PMID:31052282
Different Hydrophobins of Fusarium graminearum Are Involved in Hyphal Growth, Attachment, Water-Air Interface Penetration and Plant Infection. PMID:31031728
Expression of a Structural Protein of the Mycovirus FgV-ch9 Negatively Affects the Transcript Level of a Novel Symptom Alleviation Factor and Causes Virus Infection-Like Symptoms in Fusarium graminearum. PMID:29899100
Population genomics of Fusarium graminearum reveals signatures of divergent evolution within a major cereal pathogen. PMID:29584736
Architecture and Distribution of Introns in Core Genes of Four Fusarium Species. PMID:28993438
The ancestral levels of transcription and the evolution of sexual phenotypes in filamentous fungi. PMID:28704372
Genome-wide functional characterization of putative peroxidases in the head blight fungus Fusarium graminearum. PMID:28387997
Landscape of genomic diversity and host adaptation in Fusarium graminearum. PMID:28231761
Genome-wide exonic small interference RNA-mediated gene silencing regulates sexual reproduction in the homothallic fungus Fusarium graminearum. PMID:28146558
Comparative "Omics" of the Fusarium fujikuroi Species Complex Highlights Differences in Genetic Potential and Metabolite Synthesis. PMID:28040774
High-resolution mapping of the recombination landscape of the phytopathogen Fusarium graminearum suggests two-speed genome evolution. PMID:27998012
Functional Analysis of the Fusarielin Biosynthetic Gene Cluster. PMID:27983606
Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum. PMID:27938326
Comparison of Fusarium graminearum Transcriptomes on Living or Dead Wheat Differentiates Substrate-Responsive and Defense-Responsive Genes. PMID:27507961
Heat shock protein 90 is required for sexual and asexual development, virulence, and heat shock response in Fusarium graminearum. PMID:27306495
Utilization of a Conidia-Deficient Mutant to Study Sexual Development in Fusarium graminearum. PMID:27175901
Compartmentalized gene regulatory network of the pathogenic fungus Fusarium graminearum. PMID:26990214
2-D DIGE proteomic profiles of three strains of Fusarium graminearum grown in agmatine or glutamic acid medium. PMID:26981549
Cellular Tracking and Gene Profiling of Fusarium graminearum during Maize Stalk Rot Disease Development Elucidates Its Strategies in Confronting Phosphorus Limitation in the Host Apoplast. PMID:26974960
U6 snRNA intron insertion occurred multiple times during fungi evolution. PMID:26828373
Transcription factor ART1 mediates starch hydrolysis and mycotoxin production in Fusarium graminearum and F. verticillioides. PMID:26456718
The completed genome sequence of the pathogenic ascomycete fungus Fusarium graminearum. PMID:26198851
Whole-genome analysis of Fusarium graminearum insertional mutants identifies virulence associated genes and unmasks untagged chromosomal deletions. PMID:25881124
The Fusarium graminearum genome reveals more secondary metabolite gene clusters and hints of horizontal gene transfer. PMID:25333987
FgFlbD regulates hyphal differentiation required for sexual and asexual reproduction in the ascomycete fungus Fusarium graminearum. PMID:25277408
Comparative genome sequencing reveals chemotype-specific gene clusters in the toxigenic black mold Stachybotrys. PMID:25015739
Transcription factor RFX1 is crucial for maintenance of genome integrity in Fusarium graminearum. PMID:24465002
Automated alignment-based curation of gene models in filamentous fungi. PMID:24433567
WetA is required for conidiogenesis and conidium maturation in the ascomycete fungus Fusarium graminearum. PMID:24186953
Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivum L.). PMID:24152241
AbaA regulates conidiogenesis in the ascomycete fungus Fusarium graminearum. PMID:24039821
Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum. PMID:23861834
Deciphering the cryptic genome: genome-wide analyses of the rice pathogen Fusarium fujikuroi reveal complex regulation of secondary metabolism and novel metabolites. PMID:23825955
eFG: an electronic resource for Fusarium graminearum. PMID:23798489
Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen. PMID:23685541
Reconstruction of the biosynthetic pathway for the core fungal polyketide scaffold rubrofusarin in Saccharomyces cerevisiae. PMID:23557488
RNA-Seq analysis reveals new gene models and alternative splicing in the fungal pathogen Fusarium graminearum. PMID:23324402
In planta stage-specific fungal gene profiling elucidates the molecular strategies of Fusarium graminearum growing inside wheat coleoptiles. PMID:23266949
A conserved homeobox transcription factor Htf1 is required for phialide development and conidiogenesis in Fusarium species. PMID:23029006
Mitochondrial carnitine-dependent acetyl coenzyme A transport is required for normal sexual and asexual development of the ascomycete Gibberella zeae. PMID:22798392
The Wor1-like protein Fgp1 regulates pathogenicity, toxin synthesis and reproduction in the phytopathogenic fungus Fusarium graminearum. PMID:22693448
The predicted secretome of the plant pathogenic fungus Fusarium graminearum: a refined comparative analysis. PMID:22493673
Association of single nucleotide polymorphic sites in candidate genes with aggressiveness and deoxynivalenol production in Fusarium graminearum causing wheat head blight. PMID:22409447
The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes. PMID:22120664
Tags:
Tags
More detailed information about this field from each metasource.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2021-04-07T11:50:35.288810
fungal genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2021-04-07T11:50:35.288810
pathology
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
plant biology
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
sequence assembly
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
probes and primers
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
gene expression
metasource: bio.tools
version: extracted_at: 2021-04-07T12:00:58.205472
Tags
More detailed information about this field from each metasource.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
fungal genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2021-04-07T11:50:35.288810
pathology
metasource: bio.toolsversion: extracted_at: 2021-04-07T12:00:58.205472
plant biology
metasource: bio.toolsversion: extracted_at: 2021-04-07T12:00:58.205472
sequence assembly
metasource: bio.toolsversion: extracted_at: 2021-04-07T12:00:58.205472
probes and primers
metasource: bio.toolsversion: extracted_at: 2021-04-07T12:00:58.205472
gene expression
metasource: bio.toolsversion: extracted_at: 2021-04-07T12:00:58.205472
genomics fungal genome pathology plant biology sequence assembly probes and primers gene expression