Central Aspergillus Data REpository
Names
More detailed information about this field from each metasource.
Central Aspergillus Data REpository
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CADRE
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CADRE - Central Aspergillus Data Repository
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Names
More detailed information about this field from each metasource.
Central Aspergillus Data REpository
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CADRE
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CADRE - Central Aspergillus Data Repository
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Other names: CADRE, CADRE - Central Aspergillus Data Repository
Names
More detailed information about this field from each metasource.
Central Aspergillus Data REpository
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CADRE
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CADRE - Central Aspergillus Data Repository
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
This source may no longer be available. No known URL could be resolved successfully.
This project aims to support the international Aspergillus research community by gathering all genomic information regarding this significant genus into one resource - The Central Aspergillus REsource (CADRE). CADRE facilitates visualisation and analyses of data using the Ensembl software suite. Much of our data has been extracted from Genbank and augmented with the consent of the original sequencing groups. This additional work has been carried out using both automated and manual efforts, with support from specific annotation projects and the general Aspergillus community.
Description
More detailed information about this field from each metasource.
This project aims to support the international Aspergillus research community by gathering all genomic information regarding this significant genus into one resource - The Central Aspergillus REsource (CADRE). CADRE facilitates visualisation and analyses of data using the Ensembl software suite. Much of our data has been extracted from Genbank and augmented with the consent of the original sequencing groups. This additional work has been carried out using both automated and manual efforts, with support from specific annotation projects and the general Aspergillus community.
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Central Aspergillus data repository
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
Webpage:
http://www.cadre-genomes.org.ukWebpage
More detailed information about this field from each metasource.
http://www.cadre-genomes.org.uk
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Publications:
Publications
More detailed information about this field from each metasource.
The 2008 update of the Aspergillus nidulans genome annotation: a community effort
PMID: 19146970
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CADRE: the Central Aspergillus Data REpository
PMID: 14681443
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Aspergillus genomes and the Aspergillus cloud
PMID: 19039001
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Publications
More detailed information about this field from each metasource.
The 2008 update of the Aspergillus nidulans genome annotation: a community effort
PMID: 19146970
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
CADRE: the Central Aspergillus Data REpository
PMID: 14681443
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
Aspergillus genomes and the Aspergillus cloud
PMID: 19039001
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
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The 2008 update of the Aspergillus nidulans genome annotation: a community effort
PubMed citations: 51.
51 articles citing: The 2008 update of the Aspergillus nidulans genome annotation: a community effort
Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway. PMID:34582709
Transcription Factors in the Fungus Aspergillus nidulans: Markers of Genetic Innovation, Network Rewiring and Conflict between Genomics and Transcriptomics. PMID:34436139
Developing Functional Genomics Platforms for Fungi. PMID:34427501
Discovery of novel secondary metabolites encoded in actinomycete genomes through coculture. PMID:33825906
Identification and distribution of gene clusters required for synthesis of sphingolipid metabolism inhibitors in diverse species of the filamentous fungus Fusarium. PMID:32703172
Identification and Characterization of Aspergillus nidulans Mutants Impaired in Asexual Development under Phosphate Stress. PMID:31779253
A spliceosomal twin intron (stwintron) participates in both exon skipping and evolutionary exon loss. PMID:31289343
Molecular evolution and transcriptional profile of GH3 and GH20 β-N-acetylglucosaminidases in the entomopathogenic fungus Metarhizium anisopliae. PMID:30534852
Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli. PMID:30487660
Velvet domain protein VosA represses the zinc cluster transcription factor SclB regulatory network for Aspergillus nidulans asexual development, oxidative stress response and secondary metabolism. PMID:30044771
How a fungus shapes biotechnology: 100 years of Aspergillus niger research. PMID:29850025
Peptide-Like Nylon-3 Polymers with Activity against Phylogenetically Diverse, Intrinsically Drug-Resistant Pathogenic Fungi. PMID:29794056
Emergence and loss of spliceosomal twin introns. PMID:29046814
Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper. PMID:28955465
Functional Profiling of Transcription Factor Genes in Neurospora crassa. PMID:28696922
Lytic polysaccharide monooxygenases and other oxidative enzymes are abundantly secreted by Aspergillus nidulans grown on different starches. PMID:27588040
Machine Learning of Protein Interactions in Fungal Secretory Pathways. PMID:27441920
Development and validation of a custom microarray for global transcriptome profiling of the fungus Aspergillus nidulans. PMID:27038308
Draft Genome Sequences of Two Closely Related Aflatoxigenic Aspergillus Species Obtained from the Ivory Coast. PMID:26637470
The N-acetylglucosamine catabolic gene cluster in Trichoderma reesei is controlled by the Ndt80-like transcription factor RON1. PMID:26481444
Metagenome Analysis of Protein Domain Collocation within Cellulase Genes of Goat Rumen Microbes. PMID:25049895
High-affinity glucose transport in Aspergillus nidulans is mediated by the products of two related but differentially expressed genes. PMID:24751997
Prevalence of transcription factors in ascomycete and basidiomycete fungi. PMID:24650355
Comparative genome-scale reconstruction of gapless metabolic networks for present and ancestral species. PMID:24516375
A microscopy-based screen employing multiplex genome sequencing identifies cargo-specific requirements for dynein velocity. PMID:24403603
Recent advances in genome mining of secondary metabolite biosynthetic gene clusters and the development of heterologous expression systems in Aspergillus nidulans. PMID:24342965
Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters. PMID:24299161
Insights into dynamic mitotic chromatin organization through the NIMA kinase suppressor SonC, a chromatin-associated protein involved in the DNA damage response. PMID:24214344
NO-inducible nitrosothionein mediates NO removal in tandem with thioredoxin. PMID:23955366
FSRD: fungal stress response database. PMID:23757396
Identification of telomerase RNAs from filamentous fungi reveals conservation with vertebrates and yeasts. PMID:23555591
A time course analysis of the extracellular proteome of Aspergillus nidulans growing on sorghum stover. PMID:22835028
Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin. PMID:22812459
Genetic, molecular, and biochemical basis of fungal tropolone biosynthesis. PMID:22508998
Advances in Aspergillus secondary metabolite research in the post-genomic era. PMID:22228366
CADRE: the Central Aspergillus Data REpository 2012. PMID:22080563
The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources. PMID:22080559
New resources for functional analysis of omics data for the genus Aspergillus. PMID:21974739
Characterization of an autoinducer of penicillin biosynthesis in Penicillium chrysogenum. PMID:21724894
Dehydrogenase GRD1 represents a novel component of the cellulase regulon in Trichoderma reesei (Hypocrea jecorina). PMID:21602376
Quantitative trait locus (QTL) mapping reveals a role for unstudied genes in Aspergillus virulence. PMID:21559404
Elucidation of functional markers from Aspergillus nidulans developmental regulator FlbB and their phylogenetic distribution. PMID:21423749
Genome-based deletion analysis reveals the prenyl xanthone biosynthesis pathway in Aspergillus nidulans. PMID:21351751
Genome (re-)annotation and open-source annotation pipelines. PMID:21255336
Effects of a defective ERAD pathway on growth and heterologous protein production in Aspergillus niger. PMID:20922374
Azonazine, a novel dipeptide from a Hawaiian marine sediment-derived fungus, Aspergillus insulicola. PMID:20866076
Re-annotation is an essential step in systems biology modeling of functional genomics data. PMID:20498845
Involvement of transposon-like elements in penicillin gene cluster regulation. PMID:20219692
Unlocking fungal cryptic natural products. PMID:19967983
A fungal pH-responsive signaling pathway regulating Aspergillus adaptation and invasion into the cornea. PMID:19850840
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. PMID:19773420 -
CADRE: the Central Aspergillus Data REpository
PubMed citations: 33.
33 articles citing: CADRE: the Central Aspergillus Data REpository
Morpho-biochemical and molecular characterization of two new strains of Aspergillus fumigatus nHF-01 and A. fumigatus PPR-01 producing broad-spectrum antimicrobial compounds. PMID:33715141
Draft Genome Sequence of the Aspergillus terreus High-Itaconic-Acid-Productivity Strain IFO6365. PMID:32299870
Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin. PMID:30342519
Diverse data supports the transition of filamentous fungal model organisms into the post-genomics era. PMID:30123633
Aspergillus fumigatus responds to natural killer (NK) cells with upregulation of stress related genes and inhibits the immunoregulatory function of NK cells. PMID:27738337
Transcriptome analysis of cyclic AMP-dependent protein kinase A-regulated genes reveals the production of the novel natural compound fumipyrrole by Aspergillus fumigatus. PMID:25582336
Genetic engineering activates biosynthesis of aromatic fumaric acid amides in the human pathogen Aspergillus fumigatus. PMID:25527545
A proteomic approach to investigating gene cluster expression and secondary metabolite functionality in Aspergillus fumigatus. PMID:25198175
Extensive proteomic remodeling is induced by eukaryotic translation elongation factor 1Bγ deletion in Aspergillus fumigatus. PMID:24023013
Discovery of a HapE mutation that causes azole resistance in Aspergillus fumigatus through whole genome sequencing and sexual crossing. PMID:23226235
The Aspergillus fumigatus dihydroxyacid dehydratase Ilv3A/IlvC is required for full virulence. PMID:23028460
The Aspergillus fumigatus protein GliK protects against oxidative stress and is essential for gliotoxin biosynthesis. PMID:22903976
Molecular characterization of an adaptive response to alkylating agents in the opportunistic pathogen Aspergillus fumigatus. PMID:22669901
Identification and characterization of a novel diterpene gene cluster in Aspergillus nidulans. PMID:22506079
Genome-based cluster deletion reveals an endocrocin biosynthetic pathway in Aspergillus fumigatus. PMID:22492455
CADRE: the Central Aspergillus Data REpository 2012. PMID:22080563
Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species. PMID:22067447
Pyomelanin formation in Aspergillus fumigatus requires HmgX and the transcriptional activator HmgR but is dispensable for virulence. PMID:22046314
The Aspergillus niger multicopper oxidase family: analysis and overexpression of laccase-like encoding genes. PMID:21981827
New resources for functional analysis of omics data for the genus Aspergillus. PMID:21974739
The small GTPase RacA mediates intracellular reactive oxygen species production, polarized growth, and virulence in the human fungal pathogen Aspergillus fumigatus. PMID:21183690
Hydrophobins from Aspergillus species cannot be clearly divided into two classes. PMID:21182770
Trehalose 6-phosphate phosphatase is required for cell wall integrity and fungal virulence but not trehalose biosynthesis in the human fungal pathogen Aspergillus fumigatus. PMID:20545865
Heptahelical receptors GprC and GprD of Aspergillus fumigatus Are essential regulators of colony growth, hyphal morphogenesis, and virulence. PMID:20418440
The transposon impala is activated by low temperatures: use of a controlled transposition system to identify genes critical for viability of Aspergillus fumigatus. PMID:20097738
Integrative analysis of the heat shock response in Aspergillus fumigatus. PMID:20074381
Identification of a putative Crf splice variant and generation of recombinant antibodies for the specific detection of Aspergillus fumigatus. PMID:19675673
A regulator of Aspergillus fumigatus extracellular proteolytic activity is dispensable for virulence. PMID:19564390
The 2008 update of the Aspergillus nidulans genome annotation: a community effort. PMID:19146970
Aspergillus genomes and the Aspergillus cloud. PMID:19039001
Proteomic studies in biomedically and industrially relevant fungi. PMID:19003194
The asexual pathogen aspergillus fumigatus expresses functional determinants of Aspergillus nidulans sexual development. PMID:18757566
Small ncRNA transcriptome analysis from Aspergillus fumigatus suggests a novel mechanism for regulation of protein synthesis. PMID:18346967 -
Aspergillus genomes and the Aspergillus cloud
PubMed citations: 6.
6 articles citing: Aspergillus genomes and the Aspergillus cloud
Aspergillus Secondary Metabolite Database, a resource to understand the Secondary metabolome of Aspergillus genus. PMID:28779078
Identification of novel genes conferring altered azole susceptibility in Aspergillus fumigatus. PMID:22509997
CADRE: the Central Aspergillus Data REpository 2012. PMID:22080563
The CCAAT-binding complex coordinates the oxidative stress response in eukaryotes. PMID:19965775
Ensembl Genomes: extending Ensembl across the taxonomic space. PMID:19884133
The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community. PMID:19773420
Tags:
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene ontology enrichment
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene model annotation
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene name
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genetic strain
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome alignment
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
karyotype
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
orthologous
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein domain
metasource: Fairsharing.org
version: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
fungal genome databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
Tags
More detailed information about this field from each metasource.
dna sequence data
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene ontology enrichment
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene model annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
gene name
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genetic strain
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genome alignment
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
karyotype
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
orthologous
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
protein domain
metasource: Fairsharing.orgversion: FAIRsharing.org: CADRE; Central Aspergillus Data REpository; DOI: https://doi.org/10.25504/FAIRsharing.7x7ha7; Last edited: April 16, 2021, 3:53 p.m.; Last accessed: Jan 03 2022 7:06 p.m.
genomics databases (non-vertebrate)
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
fungal genome databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
dna sequences gene ontology enrichment gene model annotation gene name genetic strain genome alignment karyotype orthology protein domain genomics fungal genome
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