ECRbase

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

UTRome

3'UTRs and their functional elements in C. elegans

MAPPER-2

This resource provides information primarily on the upstream non-coding sequence data of genes in 3 genomes which gives insight into the transcription factors binding sites (TFBSs). For each transcrip ...

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

Factorbook

Human transcription factor binding data from ChIP-seq

Regulatory Element Database for Drosophila

REDfly is a curated collection of known Drosophila transcriptional cis-regulatory modules (CRMs) and transcription factor binding sites (TFBSs). REDfly seeks to include all experimentally verified fly ...

CollecTF

CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation ...

CORG - A database for COmparative Regulatory Genomics

Sequence conservation in non-coding, upstream regions of orthologous genes from man and mouse is likely to reflect common regulatory DNA sites. Motivated by this assumption we have delineated a catalo ...

TrSDB

Transcription factor database

Gene Transcription Regulation Database

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

TRANSFAC®

The TRANSFAC® database has been constructed to model the interaction of eukaryotic transcription factors with their DNA-binding sites and how this affects gene expression. At its core are the three ta ...

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

UCNEbase

A database of ultraconserved non-coding elements and gene regulatory blocks

DoriC

DoriC regions in bacterial and archaeal genomes

Databases of Orthologous Promoters

DoOP is a database of eukaryotic promoter sequences (upstream regions), aiming to facilitate the recognition of regulatory sites conserved between species. Based on the Arabidopsis thaliana and Homo s ...

Animal Transcription Factor Database

AnimalTFDB is a comprehensive animal transcription factor database. The resource is classification of transcription factors from 50 genomes from species including Homo sapiens and Caenorhabditis elega ...

PRODORIC2

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...