Factorbook

DPRP

A database of phenotype-specific regulatory programs derived from transcription factor binding data

YeTFaSCo

Yeast Transcription Factor binding Site sequence Collection

SNP2TFBS

Regulatory SNPs affecting predicted transcription factor binding sites

PRODORIC2

TrSDB

Transcription factor database

HTPSELEX

Transcription factor binding site sequences obtained using high-throughput SELEX method

BloodChIP

Transcription factor binding profiles in human haematopoietic stem/progenitor cells

OnTheFly

DNA-binding specificities of transcription factors in Drosophila

ChIPBase

ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs and protein-codi ...

MachiBase

Drosophila melanogaster 5' mRNA transcription start site database

Gene Transcription Regulation Database

Gene Transcription Regulation Database (GTRD) is a database of transcription factor binding sites (TFBSs) identified by ChIP-seq experiments for human and mouse.

TTSMI

Triplex Target DNA Sites in the human genome

CollecTF

CollecTF is a database of transcription factor binding sites (TFBS) in the Bacteria domain. It aims at becoming a reference, highly-accessed database by relying on its ability to customize navigation ...

PReMod

The PReMod database describes more than 100,000 computational predicted transcriptional regulatory modules within the human genome. These modules represent the regulatory potential for 229 transcripti ...

CTCF Binding Site Database

Experimentally identified and predicted CTCF binding sties

CMGSDB

Computational models for gene silencing in C. elegans

ChIPSummitDB

ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.

Greglist

G-quadruplex motifs and potentially G-quadruplex regulated genes

Saccharomyces cerevisiae Transcription Factor Database

ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces species. It identifies a single matrix for each TF that best predicts in vivo data, providing metrics ...