ZebrafishMine
ZebrafishMine is a tool to customize searches of Zebrafish-related biological data including genes, proteins, fish, and reagents
Description
More detailed information about this field from each metasource.
ZebrafishMine is a tool to customize searches of Zebrafish-related biological data including genes, proteins, fish, and reagents
metasource: Fairsharing.orgversion: FAIRsharing.org: ZebrafishMine; ZebrafishMine; DOI: https://doi.org/10.25504/FAIRsharing.59ZSlc; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
ZebrafishMine is powered by the InterMIne data warehouse system, and integrates biological data sets from multiple sources. It currently includes updates of data from ZFIN, the zebrafish model organism database. There is also data from the Panther database.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
Webpage:
http://zebrafishmine.org/Webpage
More detailed information about this field from each metasource.
http://zebrafishmine.org/
metasource: Fairsharing.orgversion: FAIRsharing.org: ZebrafishMine; ZebrafishMine; DOI: https://doi.org/10.25504/FAIRsharing.59ZSlc; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://zebrafishmine.org
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
Licence:
Name: LGPL-2.1Licence name
More detailed information about this field from each metasource.
Publications:
Publications
More detailed information about this field from each metasource.
ZFIN, The zebrafish model organism database: Updates and new directions
PMID: 26097180
metasource: Fairsharing.org
version: FAIRsharing.org: ZebrafishMine; ZebrafishMine; DOI: https://doi.org/10.25504/FAIRsharing.59ZSlc; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/bioinformatics/bts577
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:21.860396
Publications
More detailed information about this field from each metasource.
ZFIN, The zebrafish model organism database: Updates and new directions
PMID: 26097180
metasource: Fairsharing.org
version: FAIRsharing.org: ZebrafishMine; ZebrafishMine; DOI: https://doi.org/10.25504/FAIRsharing.59ZSlc; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
http://dx.doi.org/10.1093/bioinformatics/bts577
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
-
ZFIN, The zebrafish model organism database: Updates and new directions
PubMed citations: 39.
39 articles citing: ZFIN, The zebrafish model organism database: Updates and new directions
HumanMine: advanced data searching, analysis and cross-species comparison. PMID:35820040
Oxidative Stress and AKT-Associated Angiogenesis in a Zebrafish Model and Its Potential Application for Withanolides. PMID:35326412
Invertebrate Model Organisms as a Platform to Investigate Rare Human Neurological Diseases. PMID:35256540
Alternative splicing in endothelial cells: novel therapeutic opportunities in cancer angiogenesis. PMID:33287867
Bioinformatic analysis and functional predictions of selected regeneration-associated transcripts expressed by zebrafish microglia. PMID:33287696
Elongator Subunit 3 (Elp3) Is Required for Zebrafish Trunk Development. PMID:32023806
The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform. PMID:31713623
Genome-Wide Comparative Analysis of HIF Binding Sites in Cyprinus Carpio for In Silico Identification of Functional Hypoxia Response Elements. PMID:31379925
Genetic mechanism underlying sexual plasticity and its association with colour patterning in zebrafish (Danio rerio). PMID:31060508
RefSeq curation and annotation of stop codon recoding in vertebrates. PMID:30535227
The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources. PMID:30407545
MitoMiner v4.0: an updated database of mitochondrial localization evidence, phenotypes and diseases. PMID:30398659
Functional testing of a human PBX3 variant in zebrafish reveals a potential modifier role in congenital heart defects. PMID:30355621
Genenames.org: the HGNC and VGNC resources in 2019. PMID:30304474
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. PMID:30239679
Rare Genetic Blood Disease Modeling in Zebrafish. PMID:30233640
Using ZFIN: Data Types, Organization, and Retrieval. PMID:29761463
A statistical approach to identify, monitor, and manage incomplete curated data sets. PMID:29609549
Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology. PMID:29440116
Correlated evolution of personality, morphology and performance. PMID:29398712
Zebrafish Models of Human Disease: Gaining Insight into Human Disease at ZFIN. PMID:28838067
MARRVEL: Integration of Human and Model Organism Genetic Resources to Facilitate Functional Annotation of the Human Genome. PMID:28502612
Multi-species Ontologies of the Craniofacial Musculoskeletal System. PMID:28217040
The BioGRID interaction database: 2017 update. PMID:27980099
FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2017 update. PMID:27924039
The Monarch Initiative: an integrative data and analytic platform connecting phenotypes to genotypes across species. PMID:27899636
The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching. PMID:27899582
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. PMID:27899580
Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse. PMID:27899570
Advances in the Study of Heart Development and Disease Using Zebrafish. PMID:27335817
The short-lived African turquoise killifish: an emerging experimental model for ageing. PMID:26839399
Chamber Specific Gene Expression Landscape of the Zebrafish Heart. PMID:26815362
The old and new face of craniofacial research: How animal models inform human craniofacial genetic and clinical data. PMID:26808208
GeneWeaver: data driven alignment of cross-species genomics in biology and disease. PMID:26656951
WormBase 2016: expanding to enable helminth genomic research. PMID:26578572
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation. PMID:26553804
Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes. PMID:26500251
MEPD: medaka expression pattern database, genes and more. PMID:26450962
Cross-organism analysis using InterMine. PMID:26097192 - http://dx.doi.org/10.1093/bioinformatics/bts577
Tags:
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: ZebrafishMine; ZebrafishMine; DOI: https://doi.org/10.25504/FAIRsharing.59ZSlc; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: ZebrafishMine; ZebrafishMine; DOI: https://doi.org/10.25504/FAIRsharing.59ZSlc; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
reagent
metasource: Fairsharing.org
version: FAIRsharing.org: ZebrafishMine; ZebrafishMine; DOI: https://doi.org/10.25504/FAIRsharing.59ZSlc; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
data management
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:21.860396
genomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:21.860396
proteomics
metasource: bio.tools
version: extracted_at: 2022-11-04T11:31:21.860396
Tags
More detailed information about this field from each metasource.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: ZebrafishMine; ZebrafishMine; DOI: https://doi.org/10.25504/FAIRsharing.59ZSlc; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: ZebrafishMine; ZebrafishMine; DOI: https://doi.org/10.25504/FAIRsharing.59ZSlc; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
reagent
metasource: Fairsharing.orgversion: FAIRsharing.org: ZebrafishMine; ZebrafishMine; DOI: https://doi.org/10.25504/FAIRsharing.59ZSlc; Last edited: Sept. 20, 2019, 11:51 a.m.; Last accessed: Jan 03 2022 7:05 p.m.
data management
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
genomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
proteomics
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:31:21.860396
gene protein reagent data management genomics proteomics
Need help integrating and/or managing biomedical data?