Ontology for MicroRNA Target
Names
More detailed information about this field from each metasource.
Ontology for MicroRNA Target
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: OBO 4.0-12122013-2338 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMIT
OMIT
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: OBO 4.0-12122013-2338 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMIT
Names
More detailed information about this field from each metasource.
Ontology for MicroRNA Target
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: OBO 4.0-12122013-2338 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMIT
OMIT
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: OBO 4.0-12122013-2338 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMIT
Names
More detailed information about this field from each metasource.
Ontology for MicroRNA Target
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: OBO 4.0-12122013-2338 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMIT
OMIT
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: OBO 4.0-12122013-2338 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMIT
The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).
Description
More detailed information about this field from each metasource.
The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes).
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
The purpose of the OMIT ontology is to establish data exchange standards and common data elements in the microRNA (miR) domain. Biologists (cell biologists in particular) and bioinformaticians can make use of OMIT to leverage emerging semantic technologies in knowledge acquisition and discovery for more effective identification of important roles performed by miRs in humans' various diseases and biological processes (usually through miRs' respective target genes). OMIT has reused and extended a set of well-established concepts from existing bio-ontologies, e.g., Gene Ontology, Sequence Ontology, Protein Ontology, NCBI Organism Taxonomy, Human Disease Ontology, Foundational Model of Anatomy, and so forth.
metasource: Biontology / Bioportalversion: OBO 4.0-12122013-2338 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMIT
Webpage:
http://omnisearch.soc.southalabama.edu/Webpage
More detailed information about this field from each metasource.
http://omnisearch.soc.southalabama.edu/
metasource: Biontology / Bioportalversion: OBO 4.0-12122013-2338 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/OMIT
http://omnisearch.soc.southalabama.edu/w/index.php/Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence:
Name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 3.0 Unported (CC BY 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications:
Publications
More detailed information about this field from each metasource.
OMIT: dynamic, semi-automated ontology development for the microRNA domain
PMID: 25025130
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
OMIT: a domain-specific knowledge base for microRNA target prediction
PMID: 21879385
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data
PMID: 27175225
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications
More detailed information about this field from each metasource.
OMIT: dynamic, semi-automated ontology development for the microRNA domain
PMID: 25025130
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
OMIT: a domain-specific knowledge base for microRNA target prediction
PMID: 21879385
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data
PMID: 27175225
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
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OMIT: dynamic, semi-automated ontology development for the microRNA domain
PubMed citations: 9.
9 articles citing: OMIT: dynamic, semi-automated ontology development for the microRNA domain
Ontological and Non-Ontological Resources for Associating Medical Dictionary for Regulatory Activities Terms to SNOMED Clinical Terms With Semantic Properties. PMID:31551780
Literature-Based Enrichment Insights into Redox Control of Vascular Biology. PMID:31223421
A semantics-oriented computational approach to investigate microRNA regulation on glucocorticoid resistance in pediatric acute lymphoblastic leukemia. PMID:30066657
Co-expression analysis among microRNAs, long non-coding RNAs, and messenger RNAs to understand the pathogenesis and progression of diabetic kidney disease at the genetic level. PMID:28577935
The development of non-coding RNA ontology. PMID:27990175
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data. PMID:27175225
The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. PMID:27152146
Effectiveness and Usability of Bioinformatics Tools to Analyze Pathways Associated with miRNA Expression. PMID:26560461
The role of ontologies in biological and biomedical research: a functional perspective. PMID:25863278 -
OMIT: a domain-specific knowledge base for microRNA target prediction
PubMed citations: 7.
7 articles citing: OMIT: a domain-specific knowledge base for microRNA target prediction
The development of non-coding RNA ontology. PMID:27990175
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data. PMID:27175225
The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. PMID:27152146
OMIT: dynamic, semi-automated ontology development for the microRNA domain. PMID:25025130
MicroRNAs as Haematopoiesis Regulators. PMID:24454381
Context-specific microRNA analysis: identification of functional microRNAs and their mRNA targets. PMID:22977182
Knowledge acquisition, semantic text mining, and security risks in health and biomedical informatics. PMID:22371823 -
OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data
PubMed citations: 6.
6 articles citing: OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data
MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses. PMID:34156446
A semantics-oriented computational approach to investigate microRNA regulation on glucocorticoid resistance in pediatric acute lymphoblastic leukemia. PMID:30066657
An integrative approach to investigate the association among high-sensitive C-reactive protein, body fat mass distribution, and other cardiometabolic risk factors in young healthy women. PMID:29702223
Regulation of Pharmacogene Expression by microRNA in The Cancer Genome Atlas (TCGA) Research Network. PMID:28835003
Co-expression analysis among microRNAs, long non-coding RNAs, and messenger RNAs to understand the pathogenesis and progression of diabetic kidney disease at the genetic level. PMID:28577935
The development of non-coding RNA ontology. PMID:27990175
Tags:
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
cell
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
computational predictions
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
gene
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
gene prediction
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
micro rna
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
molecular entity
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
molecular interaction
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
protein
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
regulation of gene expression
metasource: Fairsharing.org
version: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
annotation
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
cell
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
computational predictions
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
gene
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
gene prediction
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
micro rna
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
molecular entity
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
molecular interaction
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
protein
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
regulation of gene expression
metasource: Fairsharing.orgversion: FAIRsharing.org: OMIT; Ontology for MicroRNA Target; DOI: https://doi.org/10.25504/FAIRsharing.mf91p5; Last edited: Dec. 16, 2019, 11:21 a.m.; Last accessed: Jan 03 2022 7:13 p.m.
cell computational predictions gene gene prediction micro rna molecular entity molecular interaction protein regulation of gene expression
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