Foundational Model of Anatomy
Names
More detailed information about this field from each metasource.
Foundational Model of Anatomy
metasource: Fairsharing.org
version: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
FMA
metasource: Fairsharing.org
version: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
Names
More detailed information about this field from each metasource.
Foundational Model of Anatomy
metasource: Fairsharing.orgversion: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
FMA
metasource: Fairsharing.orgversion: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
Names
More detailed information about this field from each metasource.
Foundational Model of Anatomy
metasource: Fairsharing.orgversion: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
FMA
metasource: Fairsharing.orgversion: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
The Foundational Model of Anatomy Ontology (FMA) is an evolving computer-based knowledge source for biomedical informatics; it is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body in a form that is understandable to humans and is also navigable, parseable and interpretable by machine-based systems. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. Its ontological framework can be applied and extended to all other species
Description
More detailed information about this field from each metasource.
The Foundational Model of Anatomy Ontology (FMA) is an evolving computer-based knowledge source for biomedical informatics; it is concerned with the representation of classes or types and relationships necessary for the symbolic representation of the phenotypic structure of the human body in a form that is understandable to humans and is also navigable, parseable and interpretable by machine-based systems. Specifically, the FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. Its ontological framework can be applied and extended to all other species
metasource: Fairsharing.orgversion: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
FMA is a domain ontology that represents a coherent body of explicit declarative knowledge about human anatomy. For a description of how this OWL version is generated, see: "Pushing the Envelope: Challenges in a Frame-Based Representation of Human Anatomy" by N. F. Noy, M. A. Musen, J. L. Mejino Jr., C. Rosse (https://www.sciencedirect.com/science/article/pii/S0169023X03001253).
metasource: Biontology / Bioportalversion: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
Webpage:
http://si.washington.edu/projects/fmaWebpage
More detailed information about this field from each metasource.
http://si.washington.edu/projects/fma
metasource: Fairsharing.orgversion: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
Licence:
Name: Creative Commons Attribution 3.0 Unported (CC BY 3.0)Licence name
More detailed information about this field from each metasource.
Creative Commons Attribution 3.0 Unported (CC BY 3.0)
metasource: Fairsharing.orgversion: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
This ontology is made available via the UMLS. Users of all UMLS ontologies must abide by the terms of the UMLS license, available at https://uts.nlm.nih.gov/license.html
metasource: Biontology / Bioportalversion: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
Licence URL
More detailed information about this field from each metasource.
https://creativecommons.org/licenses/by/3.0/
metasource: Fairsharing.orgversion: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
https://uts.nlm.nih.gov/license.html
metasource: Biontology / Bioportalversion: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
Publications:
Publications
More detailed information about this field from each metasource.
A reference ontology for biomedical informatics: the Foundational Model of Anatomy
PMID: 14759820
metasource: Fairsharing.org
version: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
From frames to OWL2: Converting the Foundational Model of Anatomy
PMID: 27235801
metasource: Fairsharing.org
version: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://sigpubs.si.washington.edu/view/subjects/FMA.html
metasource: Biontology / Bioportal
version: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
Publications
More detailed information about this field from each metasource.
A reference ontology for biomedical informatics: the Foundational Model of Anatomy
PMID: 14759820
metasource: Fairsharing.org
version: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
From frames to OWL2: Converting the Foundational Model of Anatomy
PMID: 27235801
metasource: Fairsharing.org
version: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
http://sigpubs.si.washington.edu/view/subjects/FMA.html
metasource: Biontology / Bioportalversion: 5.0.0 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/FMA
-
A reference ontology for biomedical informatics: the Foundational Model of Anatomy
PubMed citations: 291.
291 articles citing: A reference ontology for biomedical informatics: the Foundational Model of Anatomy
Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma. PMID:35197110
Matching Biomedical Ontologies through Adaptive Multi-Modal Multi-Objective Evolutionary Algorithm. PMID:34943202
FAIR data representation in times of eScience: a comparison of instance-based and class-based semantic representations of empirical data using phenotype descriptions as example. PMID:34823588
Anatomical structures, cell types and biomarkers of the Human Reference Atlas. PMID:34750582
Biomedical Ontologies to Guide AI Development in Radiology. PMID:34724143
Matching Biomedical Ontologies: Construction of Matching Clues and Systematic Evaluation of Different Combinations of Matchers. PMID:34420930
The Unified Medical Language System at 30 Years and How It Is Used and Published: Systematic Review and Content Analysis. PMID:34236337
Artificial Intelligence Decision Support for Medical Triage. PMID:33936454
Curation of over 10 000 transcriptomic studies to enable data reuse. PMID:33599246
Ontological representation, classification and data-driven computing of phenotypes. PMID:33349245
Automatic Structuring of Ontology Terms Based on Lexical Granularity and Machine Learning: Algorithm Development and Validation. PMID:33127601
Mapping scientific landscapes in UMLS research: a scientometric review. PMID:33059367
Modelling kidney disease using ontology: insights from the Kidney Precision Medicine Project. PMID:32939051
Structuring, reuse and analysis of electronic dental data using the Oral Health and Disease Ontology. PMID:32819435
Bootstrapping Adversarial Learning of Biomedical Ontology Alignments. PMID:32308857
HAIKU: A Semantic Framework for Surveillance of Healthcare-Associated Infections. PMID:32288895
The Role and Promise of Artificial Intelligence in Medical Toxicology. PMID:32215849
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung. PMID:31651362
Data Management in Computational Systems Biology: Exploring Standards, Tools, Databases, and Packaging Best Practices. PMID:31602618
Annotations, Ontologies, and Whole Slide Images - Development of an Annotated Ontology-Driven Whole Slide Image Library of Normal and Abnormal Human Tissue. PMID:31523480
Model annotation and discovery with the Physiome Model Repository. PMID:31492098
Determining Follow-Up Imaging Study Using Radiology Reports. PMID:31452006
Mapping anatomical related entities to human body parts based on wikipedia in discharge summaries. PMID:31419946
The TRANSFoRm project: Experience and lessons learned regarding functional and interoperability requirements to support primary care. PMID:31245579
Organizing phenotypic data-a semantic data model for anatomy. PMID:31221226
The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species. PMID:31214208
Analysis of disease organ as a novel phenotype towards disease genetics understanding. PMID:31207382
Beginnings of Artificial Intelligence in Medicine (AIM): Computational Artifice Assisting Scientific Inquiry and Clinical Art - with Reflections on Present AIM Challenges. PMID:31022744
Interactive biomedical ontology matching. PMID:30995257
Levels and building blocks-toward a domain granularity framework for the life sciences. PMID:30691505
Development of a cardiac-centered frailty ontology. PMID:30658684
The Representation of White Matter in the Central Nervous System. PMID:30618650
Constructing tissue-specific transcriptional regulatory networks via a Markov random field. PMID:30598101
From Matrices to Knowledge: Using Semantic Networks to Annotate the Connectome. PMID:30581382
Harmonizing semantic annotations for computational models in biology. PMID:30462164
Using Compact Coevolutionary Algorithm for Matching Biomedical Ontologies. PMID:30405706
Biomedical ontology alignment: an approach based on representation learning. PMID:30111369
Toward a standard ontology of surgical process models. PMID:30006820
Where to search top-K biomedical ontologies? PMID:29579141
Tackling the challenges of matching biomedical ontologies. PMID:29335022
Improving the interoperability of biomedical ontologies with compound alignments. PMID:29316968
Standard Anatomic Terminologies: Comparison for Use in a Health Information Exchange-Based Prior Computed Tomography (CT) Alerting System. PMID:29242174
A review of medical terminology standards and structured reporting. PMID:29034813
Extending XNAT Platform with an Incremental Semantic Framework. PMID:28912709
Disease Compass- a navigation system for disease knowledge based on ontology and linked data techniques. PMID:28629436
The Open Anatomy Browser: A Collaborative Web-Based Viewer for Interoperable Anatomy Atlases. PMID:28396633
Developing a knowledge base to support the annotation of ultrasound images of ectopic pregnancy. PMID:28137311
Developing the Quantitative Histopathology Image Ontology (QHIO): A case study using the hot spot detection problem. PMID:28003147
TNM-O: ontology support for staging of malignant tumours. PMID:27842575
Building and Querying RDF/OWL Database of Semantically Annotated Nuclear Medicine Images. PMID:27785632
TrhOnt: building an ontology to assist rehabilitation processes. PMID:27716359
Information and organization in public health institutes: an ontology-based modeling of the entities in the reception-analysis-report phases. PMID:27608917
The Inappropriate Symmetries of Multivariate Statistical Analysis in Geometric Morphometrics. PMID:27512236
First Proposal of Minimum Information About a Cellular Assay for Regenerative Medicine. PMID:27405781
The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability. PMID:27377652
From frames to OWL2: Converting the Foundational Model of Anatomy. PMID:27235801
Insight: Semantic Provenance and Analysis Platform for Multi-center Neurology Healthcare Research. PMID:27069752
The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable. PMID:27051515
Requirements for the formal representation of pathophysiology mechanisms by clinicians. PMID:27051514
Biological Model Development as an Opportunity to Provide Content Auditing for the Foundational Model of Anatomy Ontology. PMID:26958311
Automatic Extraction and Post-coordination of Spatial Relations in Consumer Language. PMID:26958247
Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases. PMID:26716837
PhenoMiner: from text to a database of phenotypes associated with OMIM diseases. PMID:26507285
My Corporis Fabrica Embryo: An ontology-based 3D spatio-temporal modeling of human embryo development. PMID:26413258
KneeTex: an ontology-driven system for information extraction from MRI reports. PMID:26347806
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies. PMID:26320941
NEO: Systematic Non-Lattice Embedding of Ontologies for Comparing the Subsumption Relationship in SNOMED CT and in FMA Using MapReduce. PMID:26306275
Combining expert knowledge and knowledge automatically acquired from electronic data sources for continued ontology evaluation and improvement. PMID:26212414
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013. PMID:26202570
Concept selection for phenotypes and diseases using learn to rank. PMID:26034558
HIGH-PRECISION BIOLOGICAL EVENT EXTRACTION: EFFECTS OF SYSTEM AND OF DATA. PMID:25937701
Ontology-based approach for in vivo human connectomics: the medial Brodmann area 6 case study. PMID:25914640
The role of ontologies in biological and biomedical research: a functional perspective. PMID:25863278
A scalable neuroinformatics data flow for electrophysiological signals using MapReduce. PMID:25852536
Similarity-based search of model organism, disease and drug effect phenotypes. PMID:25763178
The Open Physiology workflow: modeling processes over physiology circuitboards of interoperable tissue units. PMID:25759670
Gateways to the FANTOM5 promoter level mammalian expression atlas. PMID:25723102
Generation of silver standard concept annotations from biomedical texts with special relevance to phenotypes. PMID:25607983
Ontology-based image navigation: exploring 3.0-T MR neurography of the brachial plexus using AIM and RadLex. PMID:25590394
An effective method of large scale ontology matching. PMID:25411633
Anatomical entity recognition with a hierarchical framework augmented by external resources. PMID:25343498
Informatic system for a global tissue-fluid biorepository with a graph theory-oriented graphical user interface. PMID:25317275
A reappraisal of how to build modular, reusable models of biological systems. PMID:25275523
Nose to tail, roots to shoots: spatial descriptors for phenotypic diversity in the Biological Spatial Ontology. PMID:25140222
OAE: The Ontology of Adverse Events. PMID:25093068
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. PMID:25009735
Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. PMID:24999329
My Corporis Fabrica: an ontology-based tool for reasoning and querying on complex anatomical models. PMID:24936286
Ontology-supported research on vaccine efficacy, safety and integrative biological networks. PMID:24909153
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents. PMID:24755304
Phenotype ontologies and cross-species analysis for translational research. PMID:24699242
From concept representations to ontologies: a paradigm shift in health informatics? PMID:24523987
Automated annotation of functional imaging experiments via multi-label classification. PMID:24409112
Neuroanatomical domain of the foundational model of anatomy ontology. PMID:24398054
Heart beats in the cloud: distributed analysis of electrophysiological 'Big Data' using cloud computing for epilepsy clinical research. PMID:24326538
The neurological disease ontology. PMID:24314207
An ontology-based method for secondary use of electronic dental record data. PMID:24303273
Extracting actionable findings of appendicitis from radiology reports using natural language processing. PMID:24303268
Dissecting the Ambiguity of FMA Concept Names Using Taxonomy and Partonomy Structural Information. PMID:24303256
The virtual skeleton database: an open access repository for biomedical research and collaboration. PMID:24220210
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. PMID:24217912
In silico approaches and the role of ontologies in aging research. PMID:24188080
Anatomical entity mention recognition at literature scale. PMID:24162468
Learning to recognize phenotype candidates in the auto-immune literature using SVM re-ranking. PMID:24155869
Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP. PMID:24131519
The ontology of craniofacial development and malformation for translational craniofacial research. PMID:24124010
Functional tissue units and their primary tissue motifs in multi-scale physiology. PMID:24103658
Cross-domain targeted ontology subsets for annotation: the case of SNOMED CORE and RxNorm. PMID:24095962
Toward knowledge support for analysis and interpretation of complex traits. PMID:24079802
Manteia, a predictive data mining system for vertebrate genes and its applications to human genetic diseases. PMID:24038354
The mouse pathology ontology, MPATH; structure and applications. PMID:24033988
Faceted visualization of three dimensional neuroanatomy by combining ontology with faceted search. PMID:24006207
NCBI2RDF: enabling full RDF-based access to NCBI databases. PMID:23984425
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species. PMID:23937709
CELDA -- an ontology for the comprehensive representation of cells in complex systems. PMID:23865855
VINSIA: visual navigator for surgical information access. PMID:23820348
Ontology-guided organ detection to retrieve web images of disease manifestation: towards the construction of a consumer-based health image library. PMID:23792805
Query enhancement through the practical application of ontology: the IEDB and OBI. PMID:23734660
A knowledge based approach to matching human neurodegenerative disease and animal models. PMID:23717278
Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care. PMID:23686934
Eliciting candidate anatomical routes for protein interactions: a scenario from endocrine physiology. PMID:23590598
Quantitative imaging biomarker ontology (QIBO) for knowledge representation of biomedical imaging biomarkers. PMID:23589184
An analysis of FMA using structural self-bisimilarity. PMID:23557711
Using nanoinformatics methods for automatically identifying relevant nanotoxicology entities from the literature. PMID:23509721
Decomposing phenotype descriptions for the human skeletal phenome. PMID:23440304
Mining skeletal phenotype descriptions from scientific literature. PMID:23409017
An analysis of multi-type relational interactions in FMA using graph motifs with disjointness constraints. PMID:23304382
OPIC: Ontology-driven Patient Information Capturing system for epilepsy. PMID:23304354
A machine learning approach for identifying anatomical locations of actionable findings in radiology reports. PMID:23304352
A unified anatomy ontology of the vertebrate skeletal system. PMID:23251424
The plant ontology as a tool for comparative plant anatomy and genomic analyses. PMID:23220694
Learning virulent proteins from integrated query networks. PMID:23198735
On the ontology based representation of cell lines. PMID:23144907
A UML profile for the OBO relation ontology. PMID:23095840
Supervised segmentation of phenotype descriptions for the human skeletal phenome using hybrid methods. PMID:23061930
Open biomedical pluralism: formalising knowledge about breast cancer phenotypes. PMID:23046572
Event extraction across multiple levels of biological organization. PMID:22962484
Evaluation of research in biomedical ontologies. PMID:22962340
Nanoinformatics: developing new computing applications for nanomedicine. PMID:22942787
Nanoinformatics: a new area of research in nanomedicine. PMID:22866003
Multiscale modeling and data integration in the virtual physiological rat project. PMID:22805979
From classification to epilepsy ontology and informatics. PMID:22765502
Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases. PMID:22719993
Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics. PMID:22711793
A query integrator and manager for the query web. PMID:22531831
Medical image retrieval: past and present. PMID:22509468
Ontological labels for automated location of anatomical shape differences. PMID:22490168
The Bone Dysplasia Ontology: integrating genotype and phenotype information in the skeletal dysplasia domain. PMID:22449239
neuroVIISAS: approaching multiscale simulation of the rat connectome. PMID:22350719
Uberon, an integrative multi-species anatomy ontology. PMID:22293552
Semantically enabling pharmacogenomic data for the realization of personalized medicine. PMID:22256869
MiDas: automatic extraction of a common domain of discourse in sleep medicine for multi-center data integration. PMID:22195180
Disease Ontology: a backbone for disease semantic integration. PMID:22080554
Exact score distribution computation for ontological similarity searches. PMID:22078312
Improving ontologies by automatic reasoning and evaluation of logical definitions. PMID:22032770
Translating the Foundational Model of Anatomy into French using knowledge-based and lexical methods. PMID:22029629
Controlled vocabularies and semantics in systems biology. PMID:22027554
OBML - Ontologies in Biomedicine and Life Sciences. PMID:21996496
War of ontology worlds: mathematics, computer code, or Esperanto? PMID:21980276
The challenges of defining oral cancer: analysis of an ontological approach. PMID:21915705
Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case. PMID:21859449
Integrating systems biology models and biomedical ontologies. PMID:21835028
Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning. PMID:21789201
The Cardiac Atlas Project--an imaging database for computational modeling and statistical atlases of the heart. PMID:21737439
PhenomeNET: a whole-phenome approach to disease gene discovery. PMID:21737429
Informatics and standards for nanomedicine technology. PMID:21721140
The cognitive paradigm ontology: design and application. PMID:21643732
Ontological realism: A methodology for coordinated evolution of scientific ontologies. PMID:21637730
Developing a kidney and urinary pathway knowledge base. PMID:21624162
How orthogonal are the OBO Foundry ontologies? PMID:21624157
PLIO: an ontology for formal description of protein-ligand interactions. PMID:21546398
The FaceBase Consortium: a comprehensive program to facilitate craniofacial research. PMID:21458441
Leveraging biomedical ontologies and annotation services to organize microbiome data from Mammalian hosts. PMID:21347072
A common layer of interoperability for biomedical ontologies based on OWL EL. PMID:21343142
HIVBrainSeqDB: a database of annotated HIV envelope sequences from brain and other anatomical sites. PMID:21156070
An ontology-based comparative anatomy information system. PMID:21146377
Foundational model of structural connectivity in the nervous system with a schema for wiring diagrams, connectome, and basic plan architecture. PMID:21078980
Invertebrate neurophylogeny: suggested terms and definitions for a neuroanatomical glossary. PMID:21062451
An evolutionary approach to realism-based adverse event representations. PMID:21057717
The BRENDA Tissue Ontology (BTO): the first all-integrating ontology of all organisms for enzyme sources. PMID:21030441
Informatics in radiology: an information model of the DICOM standard. PMID:20980665
Interoperability between phenotype and anatomy ontologies. PMID:20971987
The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. PMID:20955817
Cognitive neuroscience 2.0: building a cumulative science of human brain function. PMID:20884276
The Digital Bee Brain: Integrating and Managing Neurons in a Common 3D Reference System. PMID:20827403
vSPARQL: a view definition language for the semantic web. PMID:20800106
Application of neuroanatomical ontologies for neuroimaging data annotation. PMID:20725521
Supporting retrieval of diverse biomedical data using evidence-aware queries. PMID:20643225
Applying the functional abnormality ontology pattern to anatomical functions. PMID:20618982
Multiple ontologies in action: composite annotations for biosimulation models. PMID:20601121
The teleost anatomy ontology: anatomical representation for the genomics age. PMID:20547776
Saliva Ontology: an ontology-based framework for a Salivaomics Knowledge Base. PMID:20525291
Spatio-structural granularity of biological material entities. PMID:20509878
The ACGT Master Ontology and its applications--towards an ontology-driven cancer research and management system. PMID:20438862
Phenotype ontologies for mouse and man: bridging the semantic gap. PMID:20427557
Adapting Clinical Ontologies in Real-World Environments. PMID:20390048
Modeling sample variables with an Experimental Factor Ontology. PMID:20200009
Inexact Matching of Ontology Graphs Using Expectation-Maximization. PMID:20160892
Putting biomedical ontologies to work. PMID:20135080
Towards computerizing intensive care sedation guidelines: design of a rule-based architecture for automated execution of clinical guidelines. PMID:20082700
Integrating phenotype ontologies across multiple species. PMID:20064205
Entity/quality-based logical definitions for the human skeletal phenome using PATO. PMID:19964203
Gene expression atlas at the European bioinformatics institute. PMID:19906730
The brain atlas concordance problem: quantitative comparison of anatomical parcellations. PMID:19787067
An evolutionary approach to the representation of adverse events. PMID:19745369
Computational reasoning across multiple models. PMID:19717801
ALE Meta-Analysis Workflows Via the Brainmap Database: Progress Towards A Probabilistic Functional Brain Atlas. PMID:19636392
A systems biology network model for genetic association studies of nicotine addiction and treatment. PMID:19525886
Integration of prostate cancer clinical data using an ontology. PMID:19497389
Relationship auditing of the FMA ontology. PMID:19475727
The Neighborhood Auditing Tool: a hybrid interface for auditing the UMLS. PMID:19475725
Auditing associative relations across two knowledge sources. PMID:19475724
Semantic Web-based integration of cancer pathways and allele frequency data. PMID:19458791
Open Biomedical Ontology-based Medline exploration. PMID:19426463
Spatiotemporal integration of molecular and anatomical data in virtual reality using semantic mapping. PMID:19421373
Application and evaluation of automated semantic annotation of gene expression experiments. PMID:19376825
Automated semantic indexing of figure captions to improve radiology image retrieval. PMID:19261938
Content-specific auditing of a large scale anatomy ontology. PMID:19248842
An improved ontological representation of dendritic cells as a paradigm for all cell types. PMID:19243617
Advances in semantic representation for multiscale biosimulation: a case study in merging models. PMID:19209710
Computational neuroanatomy: ontology-based representation of neural components and connectivity. PMID:19208191
Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data. PMID:19198662
Ontological analysis of SNOMED CT. PMID:19007445
Bridging biological ontologies and biosimulation: the ontology of physics for biology. PMID:18999003
Experience in Aligning Anatomical Ontologies. PMID:18974854
A formal ontology of subcellular neuroanatomy. PMID:18974798
BAMS Neuroanatomical Ontology: Design and Implementation. PMID:18974794
A comparison of methods for assessing penetrating trauma on retrospective multi-center data. PMID:18929685
BodyParts3D: 3D structure database for anatomical concepts. PMID:18835852
Identifying mismatches in alignments of large anatomical ontologies. PMID:18693957
A model browser for biosimulation. PMID:18693954
RadiO: a prototype application ontology for radiology reporting tasks. PMID:18693889
The @neurIST ontology of intracranial aneurysms: providing terminological services for an integrated IT infrastructure. PMID:18693797
An ontology for major histocompatibility complex (MHC) alleles and molecules. PMID:18693794
Biomedical ontologies in action: role in knowledge management, data integration and decision support. PMID:18660879
On carcinomas and other pathological entities. PMID:18629199
Standards and ontologies for functional genomics 2. PMID:18629185
Biomedical informatics and granularity. PMID:18629139
The SOFG Anatomy Entry List (SAEL): an annotation tool for functional genomics data. PMID:18629134
The EXACT description of biomedical protocols. PMID:18586727
Development and application of a framework for maintenance of medical terminological systems. PMID:18579838
Drug interaction prediction using ontology-driven hypothetical assertion framework for pathway generation followed by numerical simulation. PMID:18541046
Automated comparative auditing of NCIT genomic roles using NCBI. PMID:18486558
Terminologies for text-mining; an experiment in the lipoprotein metabolism domain. PMID:18460175
An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence. PMID:18395495
The foundational model of anatomy in OWL: Experience and perspectives. PMID:18360535
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). PMID:18327244
Integration of multi-scale biosimulation models via light-weight semantics. PMID:18229704
A prototype symbolic model of canonical functional neuroanatomy of the motor system. PMID:18164666
The cell centered database project: an update on building community resources for managing and sharing 3D imaging data. PMID:18054501
Simplified ontologies allowing comparison of developmental mammalian gene expression. PMID:17961239
Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies. PMID:17925014
Cytoview: development of a cell modelling framework. PMID:17914238
Lessons learned from cross-validating alignments between large anatomical ontologies. PMID:17911831
Protégé: a tool for managing and using terminology in radiology applications. PMID:17687607
Using contextual and lexical features to restructure and validate the classification of biomedical concepts. PMID:17650333
The neuron classification problem. PMID:17582506
Spatial location and its relevance for terminological inferences in bio-ontologies. PMID:17448242
Comparing two approaches for aligning representations of anatomy. PMID:17250997
Enhancing biomedical ontologies through alignment of semantic relationships: exploratory approaches. PMID:17238452
Ontology-based representation of simulation models of physiology. PMID:17238424
A realism-based approach to the evolution of biomedical ontologies. PMID:17238315
A framework for using reference ontologies as a foundation for the semantic web. PMID:17238310
Comparing the representation of anatomy in the FMA and SNOMED CT. PMID:17238300
Differences among cell-structure ontologies: FMA, GO, & CCO. PMID:17238294
Experience in reasoning with the foundational model of anatomy in OWL DL. PMID:17094240
An ontology of scientific experiments. PMID:17015305
Auditing as part of the terminology design life cycle. PMID:16929044
Bio-ontologies: current trends and future directions. PMID:16899495
Knowledge base version reintegration. PMID:16779224
Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference. PMID:16779163
OntoDiagram: automatic diagram generation for congenital heart defects in pediatric cardiology. PMID:16779141
Of mice and men: design of a comparative anatomy information system. PMID:16779137
An ontology-based methodology for the migration of biomedical terminologies to electronic health records. PMID:16779131
How to distinguish parthood from location in bioontologies. PMID:16779124
Use of description logic classification to reason about consequences of penetrating injuries. PMID:16779120
A strategy for improving and integrating biomedical ontologies. PMID:16779118
Challenges in converting frame-based ontology into OWL: the Foundational Model of Anatomy case-study. PMID:16779026
Two DL-based methods for auditing medical terminological systems. PMID:16779023
Interchanging lexical information for a multilingual dictionary. PMID:16778996
An ontology for PACS integration. PMID:16763933
Quality control for terms and definitions in ontologies and taxonomies. PMID:16623942
Law and order: assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy. PMID:16144698
Relationship structures and semantic type assignments of the UMLS Enriched Semantic Network. PMID:16049233
Relations in biomedical ontologies. PMID:15892874
Anatomical ontologies: names and places in biology. PMID:15833128
The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data. PMID:15774030
Anatomics: the intersection of anatomy and bioinformatics. PMID:15679867
Processes and problems in the formative evaluation of an interface to the Foundational Model of Anatomy knowledge base. PMID:15492037
Comparing associative relationships among equivalent concepts across ontologies. PMID:15360855 -
From frames to OWL2: Converting the Foundational Model of Anatomy
PubMed citations: 1.
1 articles citing: From frames to OWL2: Converting the Foundational Model of Anatomy
Knowledge Representation and Management, It's Time to Integrate! PMID:29063556 - http://sigpubs.si.washington.edu/view/subjects/FMA.html
Tags:
Tags
More detailed information about this field from each metasource.
brain imaging
metasource: Fairsharing.org
version: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
brain imaging
metasource: Fairsharing.orgversion: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: FMA; Foundational Model of Anatomy; DOI: https://doi.org/10.25504/FAIRsharing.x56jsy; Last edited: July 5, 2019, 5:10 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Need help integrating and/or managing biomedical data?