NucMap

NucMap is a database of genome-wide nucleosome positioning across multiple species. Based on raw sequence data from published studies, NucMap integrates, analyzes, and visualizes nucleosome positioning data across species.

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NucMap: a database of genome-wide nucleosome positioning map across species
PMID: 30335176

metasource: Fairsharing.org
version: None

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• NucMap: a database of genome-wide nucleosome positioning map across species PubMed citations: 16.

  16 articles citing: NucMap: a database of genome-wide nucleosome positioning map across species

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  Nucleosome-Omics: A Perspective on the Epigenetic Code and 3D Genome Landscape. PMID:35885897

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  Superstructure Detection in Nucleosome Distribution Shows Common Pattern within a Chromosome and within the Genome. PMID:35455033

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  Inter-nucleosomal potentials from nucleosomal positioning data. PMID:35403917

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  Epigenomic signatures on paralogous genes reveal underappreciated universality of active histone codes adopted across animals. PMID:35035788

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  A set of accessible enhancers enables the initial response of breast cancer cells to physiological progestin concentrations. PMID:34850111

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  iNucs: Inter-Nucleosome Interactions. PMID:34623394

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  Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels. PMID:34591957

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  NUCOME: A comprehensive database of nucleosome organization referenced landscapes in mammalian genomes. PMID:34120586

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  TP53 Targeted Deep Sequencing of Cell-Free DNA in Esophageal Squamous Cell Carcinoma Using Low-Quality Serum: Concordance with Tumor Mutation. PMID:34073316

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  ΔNp63 is a pioneer factor that binds inaccessible chromatin and elicits chromatin remodeling. PMID:33865440

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  Genome-scale profiling of circulating cell-free DNA signatures for early detection of hepatocellular carcinoma in cirrhotic patients. PMID:33589745

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  Mesoscale Modeling and Single-Nucleosome Tracking Reveal Remodeling of Clutch Folding and Dynamics in Stem Cell Differentiation. PMID:33440158

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  Chromosome Structural Mechanics Dictates the Local Spreading of Epigenetic Marks. PMID:33010237

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  CORENup: a combination of convolutional and recurrent deep neural networks for nucleosome positioning identification. PMID:32938377

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  Genome Dashboards: Framework and Examples. PMID:32171420

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  TFIIIC Binding to Alu Elements Controls Gene Expression via Chromatin Looping and Histone Acetylation. PMID:31759822

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dna structural variation

metasource: Fairsharing.org
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histone

metasource: Fairsharing.org
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molecular structure

metasource: Fairsharing.org
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dna structural variation histone molecular structure