Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass.
PMID:33505029
Identification and Downstream Analyses of Domains Amplified in Plant Genomes: The Case of StAR-Related Lipid Transfer (START) Domains in Rice.
PMID:33471342
Genome-wide association analysis reveals seed protein loci as determinants of variations in grain mold resistance in sorghum.
PMID:33452894
Involvement of SUT1 and SUT2 Sugar Transporters in the Impairment of Sugar Transport and Changes in Phloem Exudate Contents in Phytoplasma-Infected Plants.
PMID:33451049
Selective Sweeps Lead to Evolutionary Success in an Amazonian Hyperdominant Palm.
PMID:33424928
Sucrose-phosphate phosphatase from sugarcane reveals an ancestral tandem duplication.
PMID:33413115
Shotgun proteomics of peach fruit reveals major metabolic pathways associated to ripening.
PMID:33413072
The genome sequence of celery (Apium graveolens L.), an important leaf vegetable crop rich in apigenin in the Apiaceae family.
PMID:33397892
Genome-wide characterization and analysis of the CCT motif family genes in soybean (Glycine max).
PMID:33392793
PhyloGenes: An online phylogenetics and functional genomics resource for plant gene function inference.
PMID:33392435
Stable Protein Sialylation in Physcomitrella.
PMID:33391325
Refinement of Draft Genome Assemblies of Pigeonpea (Cajanus cajan).
PMID:33384719
Linkage mapping evidence for a syntenic QTL associated with flowering time in perennial C4 rhizomatous grasses Miscanthus and switchgrass.
PMID:33381230
Genome-Wide Identification and Expression Profiling of the PDI Gene Family Reveals Their Probable Involvement in Abiotic Stress Tolerance in Tomato (Solanum Lycopersicum L.).
PMID:33375673
An unbiased method for evaluating the genome-wide specificity of base editors in rice.
PMID:33349703
Genome-wide identification and evolution of HECT genes in wheat.
PMID:33344088
The Peptide PbrPSK2 From Phytosulfokine Family Induces Reactive Oxygen Species (ROS) Production to Regulate Pear Pollen Tube Growth.
PMID:33329671
Sugar and Hormone Dynamics and the Expression Profiles of SUT/SUC and SWEET Sweet Sugar Transporters during Flower Development in Petunia axillaris.
PMID:33327497
Genome-Wide Analysis of the Cyclin Gene Family and Their Expression Profile in Medicago truncatula.
PMID:33322339
Systematic Analysis and Functional Validation of Citrus Pectin Acetylesterases (CsPAEs) Reveals that CsPAE2 Negatively Regulates Citrus Bacterial Canker Development.
PMID:33322321
Genome-Wide Survey and Expression Analysis of the KT/HAK/KUP Family in Brassica napus and Its Potential Roles in the Response to K+ Deficiency.
PMID:33322211
Unequal contribution of two paralogous CENH3 variants in cowpea centromere function.
PMID:33319863
TagSeq for gene expression in non-model plants: A pilot study at the Santa Rita Experimental Range NEON core site.
PMID:33304661
The vascular targeted citrus FLOWERING LOCUS T3 gene promotes non-inductive early flowering in transgenic Carrizo rootstocks and grafted juvenile scions.
PMID:33293614
In silico prediction and segregation analysis of putative virus defense genes based on SSR markers in sweet potato F1 progenies of cultivars 'New Kawogo' and 'Resisto'.
PMID:33281890
Genome-Wide Association Study for Biomass Related Traits in a Panel of Sorghum bicolor and S. bicolor × S. halepense Populations.
PMID:33281836
The Glycine max Conserved Oligomeric Golgi (COG) Complex Functions During a Defense Response to Heterodera glycines.
PMID:33262774
Genome-Wide Identification of the Vacuolar H+-ATPase Gene Family in Five Rosaceae Species and Expression Analysis in Pear (Pyrus bretschneideri).
PMID:33261053
MutRank: an R shiny web-application for exploratory targeted mutual rank-based coexpression analyses integrated with user-provided supporting information.
PMID:33240618
Systems identification and characterization of β-glucuronosyltransferase genes involved in arabinogalactan-protein biosynthesis in plant genomes.
PMID:33239665
GreenPhylDB v5: a comparative pangenomic database for plant genomes.
PMID:33237299
The Arabidopsis V-ATPase is localized to the TGN/EE via a seed plant-specific motif.
PMID:33236982
In-silico Exploration of Channel Type and Efflux Silicon Transporters and Silicification Proteins in 80 Sequenced Viridiplantae Genomes.
PMID:33233677
Knowing When to Self-Eat - Fine-Tuning Autophagy Through ATG8 Iso-forms in Plants.
PMID:33224169
Machine learning approaches reveal genomic regions associated with sugarcane brown rust resistance.
PMID:33208862
A cellulose synthase-derived enzyme catalyses 3-O-glucuronosylation in saponin biosynthesis.
PMID:33199711
Transcriptome-wide identification of MAPKKK genes in bermudagrass (Cynodon dactylon L.) and their potential roles in low temperature stress responses.
PMID:33194398
Recurrent Drought Conditions Enhance the Induction of Drought Stress Memory Genes in Glycine max L.
PMID:33193691
MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database.
PMID:33193550
Endophyte-Promoted Phosphorus Solubilization in Populus.
PMID:33193494
European landrace diversity for common bean biofortification: a genome-wide association study.
PMID:33188249
Characterization of the Poplar R2R3-MYB Gene Family and Over-Expression of PsnMYB108 Confers Salt Tolerance in Transgenic Tobacco.
PMID:33178243
Transcription Terminator-Mediated Enhancement in Transgene Expression in Maize: Preponderance of the AUGAAU Motif Overlapping With Poly(A) Signals.
PMID:33178242
Insights Into the Regulation of the Expression Pattern of Calvin-Benson-Bassham Cycle Enzymes in C3 and C4 Grasses.
PMID:33178241
Contrasted histories of organelle and nuclear genomes underlying physiological diversification in a grass species.
PMID:33171085
A targeted sequence capture array for phylogenetics and population genomics in the Salicaceae.
PMID:33163293
Global mRNA and microRNA expression dynamics in response to anthracnose infection in sorghum.
PMID:33143636
Genetic Diversity, Population Structure, and Andean Introgression in Brazilian Common Bean Cultivars after Half a Century of Genetic Breeding.
PMID:33143347
Genome-Wide Identification, Expression Profiling, and Evolution of Phosphate Transporter Gene Family in Green Algae.
PMID:33133172
Toward the introgression of PvPdh1 for increased resistance to pod shattering in common bean.
PMID:33130953
Identification and Expression of the Multidrug and Toxic Compound Extrusion (MATE) Gene Family in Capsicum annuum and Solanum tuberosum.
PMID:33120967
Differential Defense Responses of Upland and Lowland Switchgrass Cultivars to a Cereal Aphid Pest.
PMID:33120946
Rapid metabolite response in leaf blade and petiole as a marker for shade avoidance syndrome.
PMID:33117429
Prometheus, an omics portal for interkingdom comparative genomic analyses.
PMID:33112870
Heat Stress Triggers Differential Protein Accumulation in the Extracellular Matrix of Sorghum Cell Suspension Cultures.
PMID:33105781
PhycoCosm, a comparative algal genomics resource.
PMID:33104790
Functional Analysis of the teosinte branched 1 Gene in the Tetraploid Switchgrass (Panicum virgatum L.) by CRISPR/Cas9-Directed Mutagenesis.
PMID:33101338
In Silico Analyses of Autophagy-Related Genes in Rapeseed (Brassica napus L.) under Different Abiotic Stresses and in Various Tissues.
PMID:33092180
Prediction of Dhurrin Metabolism by Transcriptome and Metabolome Analyses in Sorghum.
PMID:33086681
PLncDB V2.0: a comprehensive encyclopedia of plant long noncoding RNAs.
PMID:33079992
Genome-wide identification of ATP binding cassette (ABC) transporter and heavy metal associated (HMA) gene families in flax (Linum usitatissimum L.).
PMID:33076828
Fibrillarin evolution through the Tree of Life: Comparative genomics and microsynteny network analyses provide new insights into the evolutionary history of Fibrillarin.
PMID:33075080
Analysis of Spatio-Temporal Transcriptome Profiles of Soybean (Glycine max) Tissues during Early Seed Development.
PMID:33066688
Identification, Evolutionary and Expression Analysis of PYL-PP2C-SnRK2s Gene Families in Soybean.
PMID:33066482
EXO70A2 Is Critical for Exocyst Complex Function in Pollen Development.
PMID:33051268
Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences.
PMID:33045986
Genome-wide identification and analysis of high-affinity nitrate transporter 2 (NRT2) family genes in rapeseed (Brassica napus L.) and their responses to various stresses.
PMID:33036562
Comprehensive transcriptome profiling of Caragana microphylla in response to salt condition using de novo assembly.
PMID:33026585
Evolutionary aspects of the Viridiplantae nitroreductases.
PMID:33025290
Genome-wide identification and expression analysis of the ERF transcription factor family in pineapple (Ananas comosus (L.) Merr.).
PMID:33024641
Structural Aspects of DNA Repair and Recombination in Crop Improvement.
PMID:33024442
ARMADILLO REPEAT ONLY proteins confine Rho GTPase signalling to polar growth sites.
PMID:33020609
Genome-Wide Association Study of Wood Anatomical and Morphological Traits in Populus trichocarpa.
PMID:33013968
Biased Gene Retention in the Face of Introgression Obscures Species Relationships.
PMID:33011798
Genome-wide characterization and expression profiling of Eucalyptus grandis HD-Zip gene family in response to salt and temperature stress.
PMID:33004006
Evolutionary Dynamics of Transposable Elements Following a Shared Polyploidization Event in the Tribe Andropogoneae.
PMID:32988994
Genome-Wide Identification of the PHD-Finger Family Genes and Their Responses to Environmental Stresses in Oryza sativa L.
PMID:32961651
Genome-wide identification and expression patterns analysis of the RPD3/HDA1 gene family in cotton.
PMID:32948145
Ancestral function of the phytochelatin synthase C-terminal domain in inhibition of heavy metal-mediated enzyme overactivation.
PMID:32936292
A Genomic Perspective on the Evolutionary Diversity of the Plant Cell Wall.
PMID:32932717
Exocyst components promote an incompatible interaction between Glycine max (soybean) and Heterodera glycines (the soybean cyst nematode).
PMID:32929168
The wild strawberry kinome: identification, classification and transcript profiling of protein kinases during development and in response to gray mold infection.
PMID:32928117
Towards an understanding of the role of intrinsic protein disorder on plant adaptation to environmental challenges.
PMID:32902806
Genome-Wide Characterization, Evolution, and Expression Analysis of the Leucine-Rich Repeat Receptor-Like Protein Kinase (LRR-RLK) Gene Family in Medicago truncatula.
PMID:32899802
An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice.
PMID:32899740
Polycomb Repressive Complex 2-mediated histone modification H3K27me3 is associated with embryogenic potential in Norway spruce.
PMID:32894759
Citrus Vascular Proteomics Highlights the Role of Peroxidases and Serine Proteases during Huanglongbing Disease Progression.
PMID:32883801
Wheat Disease Resistance Genes and Their Diversification Through Integrated Domain Fusions.
PMID:32849852
Aphid-Responsive Defense Networks in Hybrid Switchgrass.
PMID:32849703
Elevated Temperatures Impose Transcriptional Constraints and Elicit Intraspecific Differences Between Coffee Genotypes.
PMID:32849685
Two splice variants of the DsMEK1 mitogen-activated protein kinase kinase (MAPKK) are involved in salt stress regulation in Dunaliella salina in different ways.
PMID:32843896
910 metagenome-assembled genomes from the phytobiomes of three urban-farmed leafy Asian greens.
PMID:32843634
Isolation of novel citrus and plum fruit promoters and their functional characterization for fruit biotechnology.
PMID:32819338
Systematic characterization of the branch point binding protein, splicing factor 1, gene family in plant development and stress responses.
PMID:32811430
Genome-Wide Identification of Apple Ubiquitin SINA E3 Ligase and Functional Characterization of MdSINA2.
PMID:32793265
Evolution and Expression of the Membrane Attack Complex and Perforin Gene Family in the Poaceae.
PMID:32785137
Conserved sequence motifs in the abiotic stress response protein late embryogenesis abundant 3.
PMID:32760115
Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors.
PMID:32728126
The alcohol dehydrogenase gene family in sugarcane and its involvement in cold stress regulation.
PMID:32727370
Sequencing and Analysis of the Sex Determination Region of Populus trichocarpa.
PMID:32722098
Molecular evolution and diversification of the GRF transcription factor family.
PMID:32706846
Calmodulin-binding transcription activator (CAMTA) genes family: Genome-wide survey and phylogenetic analysis in flax (Linum usitatissimum).
PMID:32702710
Araport Lives: An Updated Framework for Arabidopsis Bioinformatics.
PMID:32699173
DNA methylation and its effects on gene expression during primary to secondary growth in poplar stems.
PMID:32689934
Targeted suppression of soybean BAG6-induced cell death in yeast by soybean cyst nematode effectors.
PMID:32686295
Genome-Wide Identification of the CrRLK1L Subfamily and Comparative Analysis of Its Role in the Legume-Rhizobia Symbiosis.
PMID:32674446
Genome-Wide Identification, Evolution, and Expression of GDSL-Type Esterase/Lipase Gene Family in Soybean.
PMID:32670311
TE-greedy-nester: structure-based detection of LTR retrotransposons and their nesting.
PMID:32663247
Insights into the evolution of symbiosis gene copy number and distribution from a chromosome-scale Lotus japonicus Gifu genome sequence.
PMID:32658273
Phylogenomic Analysis of R2R3 MYB Transcription Factors in Sorghum and their Role in Conditioning Biofuel Syndrome.
PMID:32655308
Sympatric speciation in mountain roses (Metrosideros) on an oceanic island.
PMID:32654651
Genome assembly of Chiococca alba uncovers key enzymes involved in the biosynthesis of unusual terpenoids.
PMID:32642754
Transcriptomic and biochemical investigations support the role of rootstock-scion interaction in grapevine berry quality.
PMID:32641089
Discovery and modification of cytochrome P450 for plant natural products biosynthesis.
PMID:32637672
The Intrinsically Disordered Protein CARP9 Bridges HYL1 to AGO1 in the Nucleus to Promote MicroRNA Activity.
PMID:32636339
Volvox and volvocine green algae.
PMID:32626570
Elongating maize root: zone-specific combinations of polysaccharides from type I and type II primary cell walls.
PMID:32616810
Genome assembly of the basket willow, Salix viminalis, reveals earliest stages of sex chromosome expansion.
PMID:32605573
Evolutionary Understanding of Aquaporin Transport System in the Basal Eudicot Model Species Aquilegia coerulea.
PMID:32604788
Transcriptional Landscapes of Divergent Sporophyte Development in Two Mosses, Physcomitrium (Physcomitrella) patens and Funaria hygrometrica.
PMID:32587596
Photosynthetic Metabolism and Nitrogen Reshuffling Are Regulated by Reversible Cysteine Thiol Oxidation Following Nitrogen Deprivation in Chlamydomonas.
PMID:32585825
Genome-wide characterization and expression analyses of the auxin/indole-3-acetic acid (Aux/IAA) gene family in barley (Hordeum vulgare L.).
PMID:32581321
Isolation, characterization and expression analysis of stress responsive plant nuclear transcriptional factor subunit (NF-YB2) from commercial Saccharum hybrid and wild relative Erianthus arundinaceus.
PMID:32566442
Host plant genetic control of associated fungal and insect species in a Populus hybrid cross.
PMID:32551087
Patterns of Sequence and Expression Diversification Associate Members of the PADRE Gene Family With Response to Fungal Pathogens.
PMID:32547597
Genome-wide analysis of the U-box E3 ubiquitin ligase enzyme gene family in tomato.
PMID:32533036
MYB Superfamily in Brassica napus: Evidence for Hormone-Mediated Expression Profiles, Large Expansion, and Functions in Root Hair Development.
PMID:32517318
Coding and long non-coding RNAs provide evidence of distinct transcriptional reprogramming for two ecotypes of the extremophile plant Eutrema salsugineum undergoing water deficit stress.
PMID:32513102
OsCpn60β1 is Essential for Chloroplast Development in Rice (Oryza sativa L.).
PMID:32512821
What Can Long Terminal Repeats Tell Us About the Age of LTR Retrotransposons, Gene Conversion and Ectopic Recombination?
PMID:32508870
Evolution and Functional Divergence of the Fructokinase Gene Family in Populus.
PMID:32499793
A cost-effective approach to DNA methylation detection by Methyl Sensitive DArT sequencing.
PMID:32497070
Functional Divergence of the Arabidopsis Florigen-Interacting bZIP Transcription Factors FD and FDP.
PMID:32492426
NATpare: a pipeline for high-throughput prediction and functional analysis of nat-siRNAs.
PMID:32463462
Heavy Metal Stress-Associated Proteins in Rice and Arabidopsis: Genome-Wide Identification, Phylogenetics, Duplication, and Expression Profiles Analysis.
PMID:32457808
Structural and functional similarities and differences in nucleolar Pumilio RNA-binding proteins between Arabidopsis and the charophyte Chara corallina.
PMID:32448230
Molecular diversity and genetic structure of Saccharum complex accessions.
PMID:32442233
Global Landscapes of the Na+/H+ Antiporter (NHX) Family Members Uncover their Potential Roles in Regulating the Rapeseed Resistance to Salt Stress.
PMID:32408717
Rice 3D chromatin structure correlates with sequence variation and meiotic recombination rate.
PMID:32398676
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era.
PMID:32384671
An Acyl-CoA N-Acyltransferase Regulates Meristem Phase Change and Plant Architecture in Barley.
PMID:32376761
Structural basis for divergent and convergent evolution of catalytic machineries in plant aromatic amino acid decarboxylase proteins.
PMID:32371491
The negative regulator SMAX1 controls mycorrhizal symbiosis and strigolactone biosynthesis in rice.
PMID:32355217
Genetic Architecture of Early Vigor Traits in Wild Soybean.
PMID:32354037
Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit.
PMID:32351787
Structure-Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes.
PMID:32350121
Genotyping by RAD Sequencing Analysis Assessed the Genetic Distinctiveness of Experimental Lines and Narrowed Down the Genomic Region Responsible for Leaf Shape in Endive (Cichorium endivia L.).
PMID:32340299
Transcriptional Dynamics and Candidate Genes Involved in Pod Maturation of Common Bean (Phaseolus vulgaris L.).
PMID:32331491
Dataset for the combined transcriptome assembly of M. oleifera and functional annotation.
PMID:32309524
Exploring dynamic protein-protein interactions in cassava through the integrative interactome network.
PMID:32300157
Identification and validation of mutation points associated with waxy phenotype in cassava.
PMID:32293293
An RNA thermoswitch regulates daytime growth in Arabidopsis.
PMID:32284544
Full-length transcriptome sequencing provides insights into the evolution of apocarotenoid biosynthesis in Crocus sativus.
PMID:32280432
A Tale of Two Families: Whole Genome and Segmental Duplications Underlie Glutamine Synthetase and Phosphoenolpyruvate Carboxylase Diversity in Narrow-Leafed Lupin (Lupinus angustifolius L.).
PMID:32276381
Genomics, molecular and evolutionary perspective of NAC transcription factors.
PMID:32275733
Evolutionary and biochemical analyses reveal conservation of the Brassicaceae telomerase ribonucleoprotein complex.
PMID:32271752
Genome-wide identification of the amino acid permease genes and molecular characterization of their transcriptional responses to various nutrient stresses in allotetraploid rapeseed.
PMID:32268885
Direct ETTIN-auxin interaction controls chromatin states in gynoecium development.
PMID:32267233
IntAssoPlot: An R Package for Integrated Visualization of Genome-Wide Association Study Results With Gene Structure and Linkage Disequilibrium Matrix.
PMID:32265990
Genome-wide identification and expression analysis of the NAC transcription factor family in tomato (Solanum lycopersicum) during aluminum stress.
PMID:32264854
The Cell Wall PAC (Proline-Rich, Arabinogalactan Proteins, Conserved Cysteines) Domain-Proteins Are Conserved in the Green Lineage.
PMID:32260156
The Mitochondrial Iron-Regulated (MIR) gene is Oryza genus specific and evolved before speciation within the Oryza sativa complex.
PMID:32253515
Genome-wide analysis of Myo-inositol oxygenase gene family in tomato reveals their involvement in ascorbic acid accumulation.
PMID:32252624
NLGenomeSweeper: A Tool for Genome-Wide NBS-LRR Resistance Gene Identification.
PMID:32245073
Water lily (Nymphaea thermarum) genome reveals variable genomic signatures of ancient vascular cambium losses.
PMID:32234787
Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA.
PMID:32228449
Dissecting Adaptive Traits with Nested Association Mapping: Genetic Architecture of Inflorescence Morphology in Sorghum.
PMID:32217633
Step by step evolution of Indeterminate Domain (IDD) transcriptional regulators: from algae to angiosperms.
PMID:32206771
Genome-wide characterization and expression analysis of soybean trihelix gene family.
PMID:32206450
Biological and Cellular Functions of the Microdomain-Associated FWL/CNR Protein Family in Plants.
PMID:32204387
A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies.
PMID:32191846
Evolutionary History and Activity of RNase H1-Like Proteins in Arabidopsis thaliana.
PMID:32191307
PncStress: a manually curated database of experimentally validated stress-responsive non-coding RNAs in plants.
PMID:32185394
Actin Depolymerizing Factor Modulates Rhizobial Infection and Nodule Organogenesis in Common Bean.
PMID:32183068
Reconstruction of the Evolutionary Histories of UGT Gene Superfamily in Legumes Clarifies the Functional Divergence of Duplicates in Specialized Metabolism.
PMID:32182686
Distinctive Gene Expression Patterns Define Endodormancy to Ecodormancy Transition in Apricot and Peach.
PMID:32180783
Genome-wide identification and expression analysis of WRKY transcription factors in pearl millet (Pennisetum glaucum) under dehydration and salinity stress.
PMID:32171257
Rapid identification of an Arabidopsis NLR gene as a candidate conferring susceptibility to Sclerotinia sclerotiorum using time-resolved automated phenotyping.
PMID:32170798
The low-copy nuclear gene Agt1 as a novel DNA barcoding marker for Bromeliaceae.
PMID:32164546
Developmental Analysis of Mimulus Seed Transcriptomes Reveals Functional Gene Expression Clusters and Four Imprinted, Endosperm-Expressed Genes.
PMID:32161609
High-Resolution Linkage Map With Allele Dosage Allows the Identification of Regions Governing Complex Traits and Apospory in Guinea Grass (Megathyrsus maximus).
PMID:32161603
Global Survey and Expressions of the Phosphate Transporter Gene Families in Brassica napus and Their Roles in Phosphorus Response.
PMID:32143436
Successful field performance in warm and dry environments of soybean expressing the sunflower transcription factor HB4.
PMID:32140724
Species-Specific Duplication Event Associated with Elevated Levels of Nonstructural Carbohydrates in Sorghum bicolor.
PMID:32132167
In the presence of population structure: From genomics to candidate genes underlying local adaptation.
PMID:32128123
Molecular Evolution and Diversification of Proteins Involved in miRNA Maturation Pathway.
PMID:32121542
Genome-wide identification and expression analysis of the VQ gene family in Cicer arietinum and Medicago truncatula.
PMID:32117614
A xylan glucuronosyltransferase gene exhibits pleiotropic effects on cellular composition and leaf development in rice.
PMID:32111928
Genomewide analysis of the CIII peroxidase family in sweet orange (Citrus sinensis) and expression profiles induced by Xanthomonas citri subsp. citri and hormones.
PMID:32089529
Evolution of the Small Family of Alternative Splicing Modulators Nuclear Speckle RNA-binding Proteins in Plants.
PMID:32085457
Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis.
PMID:32076270
The Floral Repressor GmFLC-like Is Involved in Regulating Flowering Time Mediated by Low Temperature in Soybean.
PMID:32075331
Genetic analysis of the Arabidopsis TIR1/AFB auxin receptors reveals both overlapping and specialized functions.
PMID:32067636
Molecular characterization of teosinte branched1 gene governing branching architecture in cultivated maize and wild relatives.
PMID:32058540
Identification of eukaryotic translation initiation factors and the temperature-dependent nature of Turnip mosaic virus epidemics in allopolyploid Brassica juncea.
PMID:32051808
Inferring putative ancient whole-genome duplications in the 1000 Plants (1KP) initiative: access to gene family phylogenies and age distributions.
PMID:32043527
The Genome-Wide Analysis of RALF-Like Genes in Strawberry (Wild and Cultivated) and Five Other Plant Species (Rosaceae).
PMID:32041308
Systematic Analysis of the DNA Methylase and Demethylase Gene Families in Rapeseed (Brassica napus L.) and Their Expression Variations After Salt and Heat stresses.
PMID:32023925
Genome-wide identification of BXL genes in Populus trichocarpa and their expression under different nitrogen treatments.
PMID:32015953
Insights obtained using different modules of the cotton uceA1.7 promoter.
PMID:32006110
Genome-wide association study reveals that different pathways contribute to grain quality variation in sorghum (Sorghum bicolor).
PMID:32005168
Genome-wide analyses of cassava Pathogenesis-related (PR) gene families reveal core transcriptome responses to whitefly infestation, salicylic acid and jasmonic acid.
PMID:31996126
Structural evolution drives diversification of the large LRR-RLK gene family.
PMID:31990988
Expression Atlas of Selaginella moellendorffii Provides Insights into the Evolution of Vasculature, Secondary Metabolism, and Roots.
PMID:31988262
Heating quinoa shoots results in yield loss by inhibiting fruit production and delaying maturity.
PMID:31971639
Generation of fruit postharvest gene datasets and a novel motif analysis tool for functional studies: uncovering links between peach fruit heat treatment and cold storage responses.
PMID:31950388
Genome-wide survey and expression analysis of calcium-dependent protein kinase (CDPK) in grass Brachypodium distachyon.
PMID:31948407
The genome sequence of celery (Apium graveolens L.), an important leaf vegetable crop rich in apigenin in the Apiaceae family.
PMID:31934340
A Snapshot of the Trehalose Pathway During Seed Imbibition in Medicago truncatula Reveals Temporal- and Stress-Dependent Shifts in Gene Expression Patterns Associated With Metabolite Changes.
PMID:31921241
Comprehensive genomic analysis of the DUF4228 gene family in land plants and expression profiling of ATDUF4228 under abiotic stresses.
PMID:31900112
Cyberinfrastructure and resources to enable an integrative approach to studying forest trees.
PMID:31892954
Common alleles of CMT2 and NRPE1 are major determinants of CHH methylation variation in Arabidopsis thaliana.
PMID:31887137
Small noncoding RNA discovery and profiling with sRNAtools based on high-throughput sequencing.
PMID:31885040
Analysis of Soybean Long Non-Coding RNAs Reveals a Subset of Small Peptide-Coding Transcripts.
PMID:31882456
Direct visualization of degradation microcompartments at the ER membrane.
PMID:31882451
Genomic resources for energy cane breeding in the post genomics era.
PMID:31871586
Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study.
PMID:31871489
Domesticating Vigna Stipulacea: A Potential Legume Crop With Broad Resistance to Biotic Stresses.
PMID:31867036
Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava Roots.
PMID:31867030
The Terrestrial Carnivorous Plant Utricularia reniformis Sheds Light on Environmental and Life-Form Genome Plasticity.
PMID:31861318
Knowledge Base Commons (KBCommons) v1.1: a universal framework for multi-omics data integration and biological discoveries.
PMID:31856718
A Bioinformatics Approach to Explore MicroRNAs as Tools to Bridge Pathways Between Plants and Animals. Is DNA Damage Response (DDR) a Potential Target Process?
PMID:31850028
Transcriptional, metabolic and DNA methylation changes underpinning the response of Arundo donax ecotypes to NaCl excess.
PMID:31848729
Compensatory sequence variation between trans-species small RNAs and their target sites.
PMID:31845648
Investigations into a putative role for the novel BRASSIKIN pseudokinases in compatible pollen-stigma interactions in Arabidopsis thaliana.
PMID:31829135
Genome-wide identification and expression analysis of the 14-3-3 gene family in soybean (Glycine max).
PMID:31824753
Genome-wide association analyses reveal the genetic basis of biomass accumulation under symbiotic nitrogen fixation in African soybean.
PMID:31822937
Genome wide association study of 5 agronomic traits in olive (Olea europaea L.).
PMID:31822760
Unraveling candidate genes underlying biomass digestibility in elephant grass (Cenchrus purpureus).
PMID:31822283
The Chalcone Isomerase Family in Cotton: Whole-Genome Bioinformatic and Expression Analyses of the Gossypium barbadense L. Response to Fusarium Wilt Infection.
PMID:31817162
TILLING by Sequencing: A Successful Approach to Identify Rare Alleles in Soybean Populations.
PMID:31817015
Genome-wide association mapping of total antioxidant capacity, phenols, tannins, and flavonoids in a panel of Sorghum bicolor and S. bicolor × S. halepense populations using multi-locus models.
PMID:31805171
The MADS-box transcription factor PHERES1 controls imprinting in the endosperm by binding to domesticated transposons.
PMID:31789592
Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop.
PMID:31782791
Glycerol-3-phosphate mediates rhizobia-induced systemic signaling in soybean.
PMID:31757957
Gene Duplication Accelerates the Pace of Protein Gain and Loss from Plant Organelles.
PMID:31750917
Identification and characterization of the GmRD26 soybean promoter in response to abiotic stresses: potential tool for biotechnological application.
PMID:31747926
The ABA-induced soybean ERF transcription factor gene GmERF75 plays a role in enhancing osmotic stress tolerance in Arabidopsis and soybean.
PMID:31747904
Sequence characteristics of Medicago truncatula cyclophilin family members and function analysis of MsCYP20-3B involved in axillary shoot development.
PMID:31741262
Identifying Temporally Regulated Root Nodulation Biomarkers Using Time Series Gene Co-Expression Network Analysis.
PMID:31737022
PHYTOCHROME INTERACTING FACTOR8 Inhibits Phytochrome A-Mediated Far-Red Light Responses in Arabidopsis.
PMID:31732705
Genome-Wide Analysis of the DYW Subgroup PPR Gene Family and Identification of GmPPR4 Responses to Drought Stress.
PMID:31726763
Genome draft of the Arabidopsis relative Pachycladon cheesemanii reveals novel strategies to tolerate New Zealand's high ultraviolet B radiation environment.
PMID:31718535
SH3Ps-Evolution and Diversity of a Family of Proteins Engaged in Plant Cytokinesis.
PMID:31717902
Genome-Wide Analysis of Basic Helix-Loop-Helix Superfamily Members Reveals Organization and Chilling-Responsive Patterns in Cabbage (Brassica oleracea var. capitata L.).
PMID:31717469
PdWND3A, a wood-associated NAC domain-containing protein, affects lignin biosynthesis and composition in Populus.
PMID:31711424
Transcriptome analysis identifies genes related to the waxy coating on blueberry fruit in two northern-adapted rabbiteye breeding populations.
PMID:31711416
Further Elucidation of the Argonaute and Dicer Protein Families in the Model Grass Species Brachypodium distachyon.
PMID:31708948
PlantRegMap: charting functional regulatory maps in plants.
PMID:31701126
Isocitrate lyase plays important roles in plant salt tolerance.
PMID:31694539
Assembly and Annotation of a Draft Genome of the Medicinal Plant Polygonum cuspidatum.
PMID:31681373
Evolution of the Cell Wall Gene Families of Grasses.
PMID:31681352
Plant Reactome: a knowledgebase and resource for comparative pathway analysis.
PMID:31680153
Differential gene expression in non-transgenic and transgenic "M.26" apple overexpressing a peach CBF gene during the transition from eco-dormancy to bud break.
PMID:31666956
Genome-wide characterization and evolutionary analysis of heat shock transcription factors (HSFs) to reveal their potential role under abiotic stresses in radish (Raphanus sativus L.).
PMID:31651257
Finding New Cell Wall Regulatory Genes in Populus trichocarpa Using Multiple Lines of Evidence.
PMID:31649710
One thousand plant transcriptomes and the phylogenomics of green plants.
PMID:31645766
Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP).
PMID:31644802
A Sequence-Indexed Mutator Insertional Library for Maize Functional Genomics Study.
PMID:31636104
An Optimized Screen Reduces the Number of GA Transporters and Provides Insights Into Nitrate Transporter 1/Peptide Transporter Family Substrate Determinants.
PMID:31632416
Mutations in sorghum SBEIIb and SSIIa affect alkali spreading value, starch composition, thermal properties and flour viscosity.
PMID:31624872
De novo transcriptome of Gymnema sylvestre identified putative lncRNA and genes regulating terpenoid biosynthesis pathway.
PMID:31619732
Changes in gene expression and metabolic profile of drupes of Olea europaea L. cv Carolea in relation to maturation stage and cultivation area.
PMID:31619170
A modular steroid-inducible gene expression system for use in rice.
PMID:31615413
Systematic Analysis and Functional Validation of Citrus XTH Genes Reveal the Role of Csxth04 in Citrus Bacterial Canker Resistance and Tolerance.
PMID:31611887
Data Integration in Poplar: 'Omics Layers and Integration Strategies.
PMID:31608114
Continuous salt stress-induced long non-coding RNAs and DNA methylation patterns in soybean roots.
PMID:31606033
Evolutionary flexibility in flooding response circuitry in angiosperms.
PMID:31604238
PmiREN: a comprehensive encyclopedia of plant miRNAs.
PMID:31602478
A Mitochondrial LYR Protein Is Required for Complex I Assembly.
PMID:31601645
Natural variation and selection in GmSWEET39 affect soybean seed oil content.
PMID:31596499
Continued Adaptation of C4 Photosynthesis After an Initial Burst of Changes in the Andropogoneae Grasses.
PMID:31589325
CsBZIP40, a BZIP transcription factor in sweet orange, plays a positive regulatory role in citrus bacterial canker response and tolerance.
PMID:31584990
The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomics.
PMID:31579570
Sugar transporters in Fabaceae, featuring SUT MST and SWEET families of the model plant Medicago truncatula and the agricultural crop Pisum sativum.
PMID:31568488
NODULE INCEPTION Recruits the Lateral Root Developmental Program for Symbiotic Nodule Organogenesis in Medicago truncatula.
PMID:31543454
Analysis of Orthologous SECONDARY WALL-ASSOCIATED NAC DOMAIN1 (SND1) Promotor Activity in Herbaceous and Woody Angiosperms.
PMID:31540430
Genome-Wide Analysis Reveals the Role of Mediator Complex in the Soybean-Phytophthora sojae Interaction.
PMID:31540158
Molecular Evolution in Small Steps under Prevailing Negative Selection: A Nearly Universal Rule of Codon Substitution.
PMID:31504473
Genome-wide identification and expression analysis of the VQ gene family in soybean (Glycine max).
PMID:31497394
Identification and characterization of the MADS-box genes highly expressed in the laticifer cells of Hevea brasiliensis.
PMID:31481699
The Evolution of the KANADI Gene Family and Leaf Development in Lycophytes and Ferns.
PMID:31480252
Prospects of genomic resources available at the global databases for the flora of United Arab Emirates.
PMID:31475085
The rhg1-a (Rhg1 low-copy) nematode resistance source harbors a copia-family retrotransposon within the Rhg1-encoded α-SNAP gene.
PMID:31468029
Identification and in Silico Characterization of GT Factors Involved in Phytohormone and Abiotic Stresses Responses in Brachypodium distachyon.
PMID:31450734
Different regulations of cell-type transcription by UV-B in multicellular green alga Volvox carteri.
PMID:31446835
Genome-wide identification of histone methylation (H3K9me2) and acetylation (H4K12ac) marks in two ecotypes of switchgrass (Panicum virgatum L.).
PMID:31438854
Evolutionary characteristics of intergenic transcribed regions indicate rare novel genes and widespread noisy transcription in the Poaceae.
PMID:31431676
TDNAscan: A Software to Identify Complete and Truncated T-DNA Insertions.
PMID:31428129
Genome-Wide Association Study Reveals Candidate Genes for Flowering Time Variation in Common Bean (Phaseolus vulgaris L.).
PMID:31428109
Genome-Wide Transcription Factor Binding in Leaves from C3 and C4 Grasses.
PMID:31427470
New perspectives on the plant PARP family: Arabidopsis PARP3 is inactive, and PARP1 exhibits predominant poly (ADP-ribose) polymerase activity in response to DNA damage.
PMID:31426748
Compartmentalized Synthesis of Triacylglycerol at the Inner Nuclear Membrane Regulates Nuclear Organization.
PMID:31422915
Epistasis Detection and Modeling for Genomic Selection in Cowpea (Vigna unguiculata L. Walp.).
PMID:31417604
The Roles of GmERF135 in Improving Salt Tolerance and Decreasing ABA Sensitivity in Soybean.
PMID:31396249
Constructing a Reference Genome in a Single Lab: The Possibility to Use Oxford Nanopore Technology.
PMID:31390788
Genome-Wide Analysis of the WOX Gene Family and Function Exploration of GmWOX18 in Soybean.
PMID:31373320
Identifying genetic markers for a range of phylogenetic utility-From species to family level.
PMID:31369563
Molecular Characterization of ZosmaNRT2, the Putative Sodium Dependent High-Affinity Nitrate Transporter of Zostera marina L.
PMID:31357380
The Conservation of VIT1-Dependent Iron Distribution in Seeds.
PMID:31354774
Evolutionary and Comparative Expression Analyses of TCP Transcription Factor Gene Family in Land Plants.
PMID:31340456
Widespread selection and gene flow shape the genomic landscape during a radiation of monkeyflowers.
PMID:31339877
Genomics analysis of genes encoding respiratory burst oxidase homologs (RBOHs) in jatropha and the comparison with castor bean.
PMID:31338257
Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis.
PMID:31337343
Gene Expression Profiling and Fine Mapping Identifies a Gibberellin 2-Oxidase Gene Co-segregating With the Dominant Dwarfing Gene Ddw1 in Rye (Secale cereale L.).
PMID:31333700
Identification and characterization of a fast-neutron-induced mutant with elevated seed protein content in soybean.
PMID:31324928
Characterization and Expression Analysis of Heme Oxygenase Genes from Sorghum bicolor.
PMID:31320797
A genome-wide association study identified loci for yield component traits in sugarcane (Saccharum spp.).
PMID:31318931
Genome-wide in silico identification of LysM-RLK genes in potato (Solanum tuberosum L.).
PMID:31317454
Mapping non-host resistance to the stem rust pathogen in an interspecific barberry hybrid.
PMID:31311507
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment.
PMID:31293610
Overexpression of Acyl-ACP Thioesterases, CpFatB4 and CpFatB5, Induce Distinct Gene Expression Reprogramming in Developing Seeds of Brassica napus.
PMID:31284614
Genome-wide identification and functional analysis of oleosin genes in Brassica napus L.
PMID:31272381
Genome-Wide Identification and Expression Profiling of the Polygalacturonase (PG) and Pectin Methylesterase (PME) Genes in Grapevine (Vitis vinifera L.).
PMID:31261768
Site-specific cleavage of bacterial MucD by secreted proteases mediates antibacterial resistance in Arabidopsis.
PMID:31253808
DREB Genes from Common Bean (Phaseolus vulgaris L.) Show Broad to Specific Abiotic Stress Responses and Distinct Levels of Nucleotide Diversity.
PMID:31249842
The Tomato Translational Landscape Revealed by Transcriptome Assembly and Ribosome Profiling.
PMID:31248964
The Elongation Factor GmEF4 Is Involved in the Response to Drought and Salt Tolerance in Soybean.
PMID:31248195
Genome-Wide Analysis of Serine/Arginine-Rich Protein Family in Wheat and Brachypodium distachyon.
PMID:31247888
Flowering plant immune repertoires expand under mycorrhizal symbiosis.
PMID:31245768
Maize GO Annotation-Methods, Evaluation, and Review (maize-GAMER).
PMID:31245718
Several phased siRNA annotation methods can frequently misidentify 24 nucleotide siRNA-dominated PHAS loci.
PMID:31245701
Transcriptomic analysis of sweet potato under dehydration stress identifies candidate genes for drought tolerance.
PMID:31245692
Conserved redox-dependent DNA binding of ROXY glutaredoxins with TGA transcription factors.
PMID:31245678
Cross-species complementation reveals conserved functions for EARLY FLOWERING 3 between monocots and dicots.
PMID:31245666
Downregulation of Orco and 5-HTT Alters Nestmate Discrimination in the Subterranean Termite Odontotermes formosanus (Shiraki).
PMID:31244679
Redundant SCARECROW genes pattern distinct cell layers in roots and leaves of maize.
PMID:31235633
Genome-wide characterization of aspartic protease (AP) gene family in Populus trichocarpa and identification of the potential PtAPs involved in wood formation.
PMID:31234799
Cell Wall Enzymes in Zygnema circumcarinatum UTEX 1559 Respond to Osmotic Stress in a Plant-Like Fashion.
PMID:31231410
Soybean (Glycine max L.) triacylglycerol lipase GmSDP1 regulates the quality and quantity of seed oil.
PMID:31222045
Genome-wide alternative splicing landscapes modulated by biotrophic sugarcane smut pathogen.
PMID:31222001
Wavelet-Based Genomic Signal Processing for Centromere Identification and Hypothesis Generation.
PMID:31214244
NCP activates chloroplast transcription by controlling phytochrome-dependent dual nuclear and plastidial switches.
PMID:31201314
A Large-Scale Genome-Wide Association Analyses of Ethiopian Sorghum Landrace Collection Reveal Loci Associated With Important Traits.
PMID:31191590
Butterfly Pea (Clitoria ternatea), a Cyclotide-Bearing Plant With Applications in Agriculture and Medicine.
PMID:31191573
Functional Analysis of the PgCesA3 White Spruce Cellulose Synthase Gene Promoter in Secondary Xylem.
PMID:31191566
Functional, Structural and Biochemical Features of Plant Serinyl-Glutathione Transferases.
PMID:31191562
Genomic Selection with Allele Dosage in Panicum maximum Jacq.
PMID:31171567
Comparing time series transcriptome data between plants using a network module finding algorithm.
PMID:31164912
Genomic signatures of adaptation to Sahelian and Soudanian climates in sorghum landraces of Senegal.
PMID:31161017
Gene Expression analysis associated with salt stress in a reciprocally crossed rice population.
PMID:31160691
CRISPR-Based Assessment of Gene Specialization in the Gibberellin Metabolic Pathway in Rice.
PMID:31160507
Evolution and functional differentiation of recently diverged phytochelatin synthase genes from Arundo donax L.
PMID:31145784
PEST sequences from a cactus dehydrin regulate its proteolytic degradation.
PMID:31143531
Evolutionary Analyses Reveal Diverged Patterns of SQUAMOSA Promoter Binding Protein-Like (SPL) Gene Family in Oryza Genus.
PMID:31139200
Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships.
PMID:31134130
Gene Duplication in the Sugarcane Genome: A Case Study of Allele Interactions and Evolutionary Patterns in Two Genic Regions.
PMID:31134109
A genome-wide approach to the comprehensive analysis of GASA gene family in Glycine max.
PMID:31123969
Production of the cyanogenic glycoside dhurrin in yeast.
PMID:31110942
Lateral Root Initiation in the Parental Root Meristem of Cucurbits: Old Players in a New Position.
PMID:31110507
Whirly (Why) transcription factors in tomato (Solanum lycopersicum L.): genome-wide identification and transcriptional profiling under drought and salt stresses.
PMID:31089915
Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism.
PMID:31088371
Genome-Wide Identification, Evolution, and Transcriptional Profiling of PP2C Gene Family in Brassica rapa.
PMID:31073524
Identification of a role for an E6-like 1 gene in early pollen-stigma interactions in Arabidopsis thaliana.
PMID:31069543
Genome-wide identification and characterization of the metal tolerance protein (MTP) family in grape (Vitis vinifera L.).
PMID:31065499
Using RNA-seq to characterize responses to 4-hydroxyphenylpyruvate dioxygenase (HPPD) inhibitor herbicide resistance in waterhemp (Amaranthus tuberculatus).
PMID:31060501
Dynamic Transcriptome Changes Related to Oil Accumulation in Developing Soybean Seeds.
PMID:31060266
The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition.
PMID:31049561
Genome-wide identification and gene expression pattern of ABC transporter gene family in Capsicum spp.
PMID:31039176
Genome-wide analysis of maize GPAT gene family and cytological characterization and breeding application of ZmMs33/ZmGPAT6 gene.
PMID:31016347
Quantitative Trait Loci for Freezing Tolerance in a Lowland x Upland Switchgrass Population.
PMID:30984223
Functional conservation of EXA1 among diverse plant species for the infection by a family of plant viruses.
PMID:30976020
Prunus genetics and applications after de novo genome sequencing: achievements and prospects.
PMID:30962943
The auxin response factor gene family in allopolyploid Brassica napus.
PMID:30958842
Populus trichocarpa clade A PP2C protein phosphatases: their stress-induced expression patterns, interactions in core abscisic acid signaling, and potential for regulation of growth and development.
PMID:30945147
Genome-wide association study for kernel composition and flour pasting behavior in wholemeal maize flour.
PMID:30940081
The Molecular and Structural Basis of O-methylation Reaction in Coumarin Biosynthesis in Peucedanum praeruptorum Dunn.
PMID:30934718
Comparative Genomics Analysis Provides New Insight Into Molecular Basis of Stomatal Movement in Kalanchoë fedtschenkoi.
PMID:30930922
Paternally Expressed Imprinted Genes under Positive Darwinian Selection in Arabidopsis thaliana.
PMID:30913563
Genome-Wide Analysis of Multiple Organellar RNA Editing Factor Family in Poplar Reveals Evolution and Roles in Drought Stress.
PMID:30901839
Impact of Stomatal Density and Morphology on Water-Use Efficiency in a Changing World.
PMID:30894867
Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton.
PMID:30886425
Infrastructures of systems biology that facilitate functional genomic study in rice.
PMID:30874968
Genetic Mapping With Allele Dosage Information in Tetraploid Urochloa decumbens (Stapf) R. D. Webster Reveals Insights Into Spittlebug (Notozulia entreriana Berg) Resistance.
PMID:30873183
Multispecies genome-wide analysis defines the MAP3K gene family in Gossypium hirsutum and reveals conserved family expansions.
PMID:30871456
Angiosperm-Wide and Family-Level Analyses of AP2/ERF Genes Reveal Differential Retention and Sequence Divergence After Whole-Genome Duplication.
PMID:30863419
Unbiased subgenome evolution following a recent whole-genome duplication in pear (Pyrus bretschneideri Rehd.).
PMID:30854211
Genome-wide identification of CAMTA gene family members in Phaseolus vulgaris L. and their expression profiling during salt stress.
PMID:30843175
Transcriptome analysis of a rice cultivar reveals the differentially expressed genes in response to wild and mutant strains of Xanthomonas oryzae pv. oryzae.
PMID:30842619
Comparative genomics reveals origin of MIR159A-MIR159B paralogy, and complexities of PTGS interaction between miR159 and target GA-MYBs in Brassicaceae.
PMID:30840147
Evolutionary history and structure of nuclear matrix constituent proteins, the plant analogues of lamins.
PMID:30828723
Comprehensive Analysis of the Chitinase Family Genes in Tomato (Solanum lycopersicum).
PMID:30823433
Evolutionary Insight into the Clock-Associated PRR5 Transcriptional Network of Flowering Plants.
PMID:30814643
Analysis of wheat gene expression related to the oxidative stress response and signal transduction under short-term osmotic stress.
PMID:30808876
Origin and evolution of the octoploid strawberry genome.
PMID:30804557
Technological advances in maize breeding: past, present and future.
PMID:30798332
SuCComBase: a manually curated repository of plant sulfur-containing compounds.
PMID:30793170
Intrusive Growth of Phloem Fibers in Flax Stem: Integrated Analysis of miRNA and mRNA Expression Profiles.
PMID:30791461
Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway.
PMID:30789903
RNA-Seq reveals new DELLA targets and regulation in transgenic GA-insensitive grapevines.
PMID:30777012
Mechanistic insights into the evolution of DUF26-containing proteins in land plants.
PMID:30775457
Cold Induced Antisense Transcription of FLOWERING LOCUS C in Distant Grasses.
PMID:30774642
Molecular Evolution of the Vacuolar Iron Transporter (VIT) Family Genes in 14 Plant Species.
PMID:30769903
Unraveling the complex genome of Saccharum spontaneum using Polyploid Gene Assembler.
PMID:30768175
In Silico Genome-Wide Analysis of the ATP-Binding Cassette Transporter Gene Family in Soybean (Glycine max L.) and Their Expression Profiling.
PMID:30766888
Messages From the Past: New Insights in Plant Lectin Evolution.
PMID:30761173
A Phylogenetic Study of the ANT Family Points to a preANT Gene as the Ancestor of Basal and euANT Transcription Factors in Land Plants.
PMID:30761165
Deletion of BSG1 in Chlamydomonas reinhardtii leads to abnormal starch granule size and morphology.
PMID:30760823
Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (Populus trichocarpa).
PMID:30755461
Genome reorganization of the GmSHMT gene family in soybean showed a lack of functional redundancy in resistance to soybean cyst nematode.
PMID:30728404
Transcriptome-wide characterization and functional analysis of MATE transporters in response to aluminum toxicity in Medicago sativa L.
PMID:30723620
Plant IsomiR Atlas: Large Scale Detection, Profiling, and Target Repertoire of IsomiRs in Plants.
PMID:30723486
Diff isomiRs: Large-scale detection of differential isomiRs for understanding non-coding regulated stress omics in plants.
PMID:30723229
Comparative transcriptome analysis reveals new molecular pathways for cucumber genes related to sex determination.
PMID:30719568
The Systems Architecture of Molecular Memory in Poplar after Abiotic Stress.
PMID:30705134
SNARE Proteins LjVAMP72a and LjVAMP72b Are Required for Root Symbiosis and Root Hair Formation in Lotus japonicus.
PMID:30700990
Agrobacterium-mediated Tnt1 mutagenesis of moss protonemal filaments and generation of stable mutants with impaired gametophyte.
PMID:30689096
Identification and Characterization of Mitogen-Activated Protein Kinase (MAPK) Genes in Sunflower (Helianthus annuus L.).
PMID:30678298
Genome-wide identification and characterization of CKIN/SnRK gene family in Chlamydomonas reinhardtii.
PMID:30674892
Involving community in genes and pathway curation.
PMID:30649295
Genome-Wide Characterization and Identification of Trihelix Transcription Factor and Expression Profiling in Response to Abiotic Stresses in Rice (Oryza sativa L.).
PMID:30634597
Systematic analysis of NAC transcription factors' gene family and identification of post-flowering drought stress responsive members in sorghum.
PMID:30627770
Analysis of the distribution of assimilation products and the characteristics of transcriptomes in rice by submergence during the ripening stage.
PMID:30621581
Integrated Transcriptome Analysis Reveals Plant Hormones Jasmonic Acid and Salicylic Acid Coordinate Growth and Defense Responses upon Fungal Infection in Poplar.
PMID:30609760
The control of endopolygalacturonase expression by the sugarcane RAV transcription factor during aerenchyma formation.
PMID:30605523
Comprehensive analysis of Lon proteases in plants highlights independent gene duplication events.
PMID:30590727
Plant stress RNA-seq Nexus: a stress-specific transcriptome database in plant cells.
PMID:30587128
Genome-Wide Identification and Comparative Analysis for OPT Family Genes in Panax ginseng and Eleven Flowering Plants.
PMID:30577553
Plant-specific ribosome biogenesis factors in Arabidopsis thaliana with essential function in rRNA processing.
PMID:30576513
PhytoTypeDB: a database of plant protein inter-cultivar variability and function.
PMID:30576486
Genome-scale characterization of the vacuole nitrate transporter Chloride Channel (CLC) genes and their transcriptional responses to diverse nutrient stresses in allotetraploid rapeseed.
PMID:30571734
Genome-wide analysis of the pentatricopeptide repeat gene family in different maize genomes and its important role in kernel development.
PMID:30567489
The Dominant and Poorly Penetrant Phenotypes of Maize Unstable factor for orange1 Are Caused by DNA Methylation Changes at a Linked Transposon.
PMID:30563848
DREAMSeq: An Improved Method for Analyzing Differentially Expressed Genes in RNA-seq Data.
PMID:30559761
PlantEAR: Functional Analysis Platform for Plant EAR Motif-Containing Proteins.
PMID:30555515
Conservation and Diversification of Circadian Rhythmicity Between a Model Crassulacean Acid Metabolism Plant Kalanchoë fedtschenkoi and a Model C3 Photosynthesis Plant Arabidopsis thaliana.
PMID:30546378
Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra.
PMID:30541448
Fluctuating selection on migrant adaptive sodium transporter alleles in coastal Arabidopsis thaliana.
PMID:30530653
Drought adaptation in Arabidopsis thaliana by extensive genetic loss-of-function.
PMID:30520727
Downregulation of RdDM during strawberry fruit ripening.
PMID:30514401
Genome-wide identification and localization of chalcone synthase family in soybean (Glycine max [L]Merr).
PMID:30509179
Integrated physiologic, genomic and transcriptomic strategies involving the adaptation of allotetraploid rapeseed to nitrogen limitation.
PMID:30509163
RAD-seq reveals genetic structure of the F2-generation of natural willow hybrids (Salix L.) and a great potential for interspecific introgression.
PMID:30509159
Genome-Wide Analysis of LRR-RLK Gene Family in Four Gossypium Species and Expression Analysis during Cotton Development and Stress Responses.
PMID:30501109
Multilevel comparative bioinformatics to investigate evolutionary relationships and specificities in gene annotations: an example for tomato and grapevine.
PMID:30497367
OXA2b is Crucial for Proper Membrane Insertion of COX2 during Biogenesis of Complex IV in Plant Mitochondria.
PMID:30487140
Engineering modular diterpene biosynthetic pathways in Physcomitrella patens.
PMID:30470899
Uncovering Bax inhibitor-1 dual role in the legume-rhizobia symbiosis in common bean roots.
PMID:30462254
Genome-wide identification and analysis of non-specific Lipid Transfer Proteins in hexaploid wheat.
PMID:30459322
Genome-wide analysis reveals the evolution and structural features of WRINKLED1 in plants.
PMID:30446819
Identification of O-acetylserine(thiol)lyase (OASTL) genes in sorghum (Sorghum bicolor) and gene expression analysis under cadmium stress.
PMID:30443823
Unlocking conserved and diverged metabolic characteristics in cassava carbon assimilation via comparative genomics approach.
PMID:30413726
Dissecting the Genomic Diversification of Late Embryogenesis Abundant (LEA) Protein Gene Families in Plants.
PMID:30407531
Proteome evolution under non-substitutable resource limitation.
PMID:30405128
Uncovering full-length transcript isoforms of sugarcane cultivar Khon Kaen 3 using single-molecule long-read sequencing.
PMID:30397543
RNA uridylation and decay in plants.
PMID:30397100
PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants.
PMID:30395277
New insights into tomato microRNAs.
PMID:30375421
Gene-guided discovery and engineering of branched cyclic peptides in plants.
PMID:30373830
Bottlenecks for genome-edited crops on the road from lab to farm.
PMID:30367679
Expansion and Functional Divergence of the SHORT VEGETATIVE PHASE (SVP) Genes in Eudicots.
PMID:30364940
Translational genomics and multi-omics integrated approaches as a useful strategy for crop breeding.
PMID:30353370
Comparative Transcriptomic Analysis of Two Actinorhizal Plants and the Legume Medicago truncatula Supports the Homology of Root Nodule Symbioses and Is Congruent With a Two-Step Process of Evolution in the Nitrogen-Fixing Clade of Angiosperms.
PMID:30349546
RAMOSA1 ENHANCER LOCUS2-Mediated Transcriptional Repression Regulates Vegetative and Reproductive Architecture.
PMID:30348817
The nitrilase PtNIT1 catabolizes herbivore-induced nitriles in Populus trichocarpa.
PMID:30348089
GFDP: the gene family database in poplar.
PMID:30339216
Resurrected Protein Interaction Networks Reveal the Innovation Potential of Ancient Whole-Genome Duplication.
PMID:30333148
Comparative Analysis of Homologous Sequences of Saccharum officinarum and Saccharum spontaneum Reveals Independent Polyploidization Events.
PMID:30319674
DREB2 (dehydration-responsive element-binding protein 2) type transcription factor in sorghum (Sorghum bicolor): genome-wide identification, characterization and expression profiles under cadmium and salt stresses.
PMID:30305995
A Musashi Splice Variant and Its Interaction Partners Influence Temperature Acclimation in Chlamydomonas.
PMID:30301774
Copaifera langsdorffii Novel Putative Long Non-Coding RNAs: Interspecies Conservation Analysis in Adaptive Response to Different Biomes.
PMID:30297664
Reconfigured Cyanogenic Glucoside Biosynthesis in Eucalyptus cladocalyx Involves a Cytochrome P450 CYP706C55.
PMID:30297456
A SOC1-like gene MtSOC1a promotes flowering and primary stem elongation in Medicago.
PMID:30295903
Genome-Wide Association Study in Pseudo-F2 Populations of Switchgrass Identifies Genetic Loci Affecting Heading and Anthesis Dates.
PMID:30271414
Transcriptomics and co-expression networks reveal tissue-specific responses and regulatory hubs under mild and severe drought in papaya (Carica papaya L.).
PMID:30267030
Bona fide choline monoxygenases evolved in Amaranthaceae plants from oxygenases of unknown function: Evidence from phylogenetics, homology modeling and docking studies.
PMID:30256846
Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus).
PMID:30248137
Maintaining Genome Integrity during Seed Development in Phaseolus vulgaris L.: Evidence from a Transcriptomic Profiling Study.
PMID:30241355
Growing and cultivating the forest genomics database, TreeGenes.
PMID:30239664
Deciphering genome-wide WRKY gene family of Triticum aestivum L. and their functional role in response to Abiotic stress.
PMID:30238225
Molecular Evolution of GDP-D-Mannose Epimerase (GME), a Key Gene in Plant Ascorbic Acid Biosynthesis.
PMID:30233629
Identification of Key Enzymes for Pectin Synthesis in Seed Mucilage.
PMID:30228108
A Trihelix Family Transcription Factor Is Associated with Key Genes in Mixed-Linkage Glucan Accumulation.
PMID:30224432
Discovery and characterization of conserved binding of eIF4E 1 (CBE1), a eukaryotic translation initiation factor 4E-binding plant protein.
PMID:30213859
Transcriptomic analyses of cacao cell suspensions in light and dark provide target genes for controlled flavonoid production.
PMID:30206304
Phylogenetic approaches to identifying fragments of the same gene, with application to the wheat genome.
PMID:30184069
Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification.
PMID:30180895
A gene-rich fraction analysis of the Passiflora edulis genome reveals highly conserved microsyntenic regions with two related Malpighiales species.
PMID:30158558
Genome-wide Identification of PP2C Genes and Their Expression Profiling in Response to Drought and Cold Stresses in Medicago truncatula.
PMID:30150630
Comparative Genomics Approaches Accurately Predict Deleterious Variants in Plants.
PMID:30139765
---A web resource for nutrient use efficiency-related genes, quantitative trait loci and microRNAs in important cereals and model plants.
PMID:30135718
QTL mapping and validation of fertility restoration in West African sorghum A1 cytoplasm and identification of a potential causative mutation for Rf2.
PMID:30132022
Defining the genetic components of callus formation: A GWAS approach.
PMID:30118526
Transcriptomic comparison reveals genetic variation potentially underlying seed developmental evolution of soybeans.
PMID:30113693
Assessing genome assembly quality using the LTR Assembly Index (LAI).
PMID:30107434
Genomic Signatures of Adaptation to a Precipitation Gradient in Nigerian Sorghum.
PMID:30097471
Response of cell-wall composition and RNA-seq transcriptome to methyl-jasmonate in Brachypodium distachyon callus.
PMID:30094490
Genome wide association mapping of agro-morphological traits among a diverse collection of finger millet (Eleusine coracana L.) genotypes using SNP markers.
PMID:30092057
Investigating the NAD-ME biochemical pathway within C4 grasses using transcript and amino acid variation in C4 photosynthetic genes.
PMID:30078073
Genome-wide identification and analysis of the ALTERNATIVE OXIDASE gene family in diploid and hexaploid wheat.
PMID:30074999
Molecular characterization, modeling, and docking analysis of late phytic acid biosynthesis pathway gene, inositol polyphosphate 6-/3-/5-kinase, a potential candidate for developing low phytate crops.
PMID:30073129
Evolution and diversification of the plant gibberellin receptor GID1.
PMID:30068603
A Rice B-Box Protein, OsBBX14, Finely Regulates Anthocyanin Biosynthesis in Rice.
PMID:30060460
Evidence for a Unique DNA-Dependent RNA Polymerase in Cereal Crops.
PMID:30053133
Genome sequence and genetic transformation of a widely distributed and cultivated poplar.
PMID:30044051
Rice with reduced stomatal density conserves water and has improved drought tolerance under future climate conditions.
PMID:30043395
Identification and expression of genes in response to cassava bacterial blight infection.
PMID:30039242
Effect of 1-aminocyclopropane-1-carboxylic acid (ACC)-induced ethylene on cellulose synthase A (CesA) genes in flax (Linum usitatissimum L. 'Nike') seedlings.
PMID:30032481
Transcriptome Profiles of Nod Factor-independent Symbiosis in the Tropical Legume Aeschynomene evenia.
PMID:30026595
MtNODULE ROOT1 and MtNODULE ROOT2 Are Essential for Indeterminate Nodule Identity.
PMID:30026291
Characterization of a large sex determination region in Salix purpurea L. (Salicaceae).
PMID:30022352
Simultaneous CRISPR/Cas9-mediated editing of cassava eIF4E isoforms nCBP-1 and nCBP-2 reduces cassava brown streak disease symptom severity and incidence.
PMID:30019807
MORC Domain Definition and Evolutionary Analysis of the MORC Gene Family in Green Plants.
PMID:29982569
KBase: The United States Department of Energy Systems Biology Knowledgebase.
PMID:29979655
Fern genomes elucidate land plant evolution and cyanobacterial symbioses.
PMID:29967517
Genome-wide analysis of the invertase gene family from maize.
PMID:29948658
RNA-Seq in the discovery of a sparsely expressed scent-determining monoterpene synthase in lavender (Lavandula).
PMID:29948128
Rates and Patterns of Mutation in Tandem Repetitive DNA in Six Independent Lineages of Chlamydomonas reinhardtii.
PMID:29931069
TM8 represses developmental timing in Nicotiana benthamiana and has functionally diversified in angiosperms.
PMID:29929474
Comparative transcriptome analysis of Haematococcus pluvialis on astaxanthin biosynthesis in response to irradiation with red or blue LED wavelength.
PMID:29916185
Oak genome reveals facets of long lifespan.
PMID:29915331
In situ architecture of the algal nuclear pore complex.
PMID:29915221
Genome-wide identification and characterization of the RIO atypical kinase family in plants.
PMID:29892951
A Variable Polyglutamine Repeat Affects Subcellular Localization and Regulatory Activity of a Populus ANGUSTIFOLIA Protein.
PMID:29884614
Comparative transcriptomics reveals shared gene expression changes during independent evolutionary origins of stem and hypocotyl/root tubers in Brassica (Brassicaceae).
PMID:29856865
Comparative analysis of plant MKK gene family reveals novel expansion mechanism of the members and sheds new light on functional conservation.
PMID:29843611
The effects of repeated whole genome duplication events on the evolution of cytokinin signaling pathway.
PMID:29843594
Function of the evolutionarily conserved plant methionine-S-sulfoxide reductase without the catalytic residue.
PMID:29808313
Characterization of gossypol biosynthetic pathway.
PMID:29784821
Revised Phylogeny of the Cellulose Synthase Gene Superfamily: Insights into Cell Wall Evolution.
PMID:29780036
Integrative genomics approaches validate PpYUC11-like as candidate gene for the stony hard trait in peach (P. persica L. Batsch).
PMID:29776387
De novo genome assembly of the red silk cotton tree (Bombax ceiba).
PMID:29757382
Comparative in Silico Analysis of Ferric Reduction Oxidase (FRO) Genes Expression Patterns in Response to Abiotic Stresses, Metal and Hormone Applications.
PMID:29757203
Meta-QTL analysis of seed iron and zinc concentration and content in common bean (Phaseolus vulgaris L.).
PMID:29752522
Transport and Use of Bicarbonate in Plants: Current Knowledge and Challenges Ahead.
PMID:29751549
Comprehensive analyses of the BES1 gene family in Brassica napus and examination of their evolutionary pattern in representative species.
PMID:29743014
Prediction of plant lncRNA by ensemble machine learning classifiers.
PMID:29720103
psRNATarget: a plant small RNA target analysis server (2017 release).
PMID:29718424
A genome-wide analysis of the flax (Linum usitatissimum L.) dirigent protein family: from gene identification and evolution to differential regulation.
PMID:29713868
The Sequenced Angiosperm Genomes and Genome Databases.
PMID:29706973
OMGene: mutual improvement of gene models through optimisation of evolutionary conservation.
PMID:29703150
Enhanced JBrowse plugins for epigenomics data visualization.
PMID:29699480
An atypical N-ethylmaleimide sensitive factor enables the viability of nematode-resistant Rhg1 soybeans.
PMID:29695628
Phylogenetic and CRISPR/Cas9 Studies in Deciphering the Evolutionary Trajectory and Phenotypic Impacts of Rice ERECTA Genes.
PMID:29692796
Large effect quantitative trait loci for salicinoid phenolic glycosides in Populus: Implications for gene discovery.
PMID:29686853
The Amount of Nitrogen Used for Photosynthesis Modulates Molecular Evolution in Plants.
PMID:29684170
The nonstop decay and the RNA silencing systems operate cooperatively in plants.
PMID:29672715
Genomic prediction applied to high-biomass sorghum for bioenergy production.
PMID:29670457
Synergistic Binding of bHLH Transcription Factors to the Promoter of the Maize NADP-ME Gene Used in C4 Photosynthesis Is Based on an Ancient Code Found in the Ancestral C3 State.
PMID:29659975
Plant Lineage-Specific Amplification of Transcription Factor Binding Motifs by Miniature Inverted-Repeat Transposable Elements (MITEs).
PMID:29659815
Present Scenario of Long Non-Coding RNAs in Plants.
PMID:29657289
Duplication and diversification of lectin receptor-like kinases (LecRLK) genes in soybean.
PMID:29651041
Genome-wide (ChIP-seq) identification of target genes regulated by BdbZIP10 during paraquat-induced oxidative stress.
PMID:29636001
Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (Lolium perenne L.).
PMID:29626084
Global gene regulation in tomato plant (Solanum lycopersicum) responding to vector (Bactericera cockerelli) feeding and pathogen ('Candidatus Liberibacter solanacearum') infection.
PMID:29619663
IPD3 and IPD3L Function Redundantly in Rhizobial and Mycorrhizal Symbioses.
PMID:29616050
Genome-Wide Identification of the Alba Gene Family in Plants and Stress-Responsive Expression of the Rice Alba Genes.
PMID:29597290
Cross-species multiple environmental stress responses: An integrated approach to identify candidate genes for multiple stress tolerance in sorghum (Sorghum bicolor (L.) Moench) and related model species.
PMID:29590108
Characterization of the basic helix-loop-helix gene family and its tissue-differential expression in response to salt stress in poplar.
PMID:29576971
Ribosome profiling reveals changes in translational status of soybean transcripts during immature cotyledon development.
PMID:29570733
Plant Glycine-Rich Proteins in Stress Response: An Emerging, Still Prospective Story.
PMID:29568308
Biochemical and genetic analyses of N metabolism in maize testcross seedlings: 2. Roots.
PMID:29541827
A microtubule-dynein tethering complex regulates the axonemal inner dynein f (I1).
PMID:29540525
Genome-Wide Transcriptome Analysis Reveals the Comprehensive Response of Two Susceptible Poplar Sections to Marssonina brunnea Infection.
PMID:29534547
Genome-wide identification and characterization of Dof transcription factors in eggplant (Solanum melongena L.).
PMID:29527420
RecQ Helicases Function in Development, DNA Repair, and Gene Targeting in Physcomitrella patens.
PMID:29514942
Phytochrome B regulates resource allocation in Brassica rapa.
PMID:29514292
Comparative transcriptome analysis provides key insights into gene expression pattern during the formation of nodule-like structures in Brachypodium.
PMID:29511998
Up-regulation of GhTT2-3A in cotton fibres during secondary wall thickening results in brown fibres with improved quality.
PMID:29509985
Simultaneous imaging and functional studies reveal a tight correlation between calcium and actin networks.
PMID:29507239
Potentials, Challenges, and Genetic and Genomic Resources for Sugarcane Biomass Improvement.
PMID:29503654
The Complexity of Mitochondrial Complex IV: An Update of Cytochrome c Oxidase Biogenesis in Plants.
PMID:29495437
Different Modes of Gene Duplication Show Divergent Evolutionary Patterns and Contribute Differently to the Expansion of Gene Families Involved in Important Fruit Traits in Pear (Pyrus bretschneideri).
PMID:29487610
Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching.
PMID:29483921
Synopsis of the SOFL Plant-Specific Gene Family.
PMID:29467189
Diel pattern of circadian clock and storage protein gene expression in leaves and during seed filling in cowpea (Vigna unguiculata).
PMID:29444635
Ancient duons may underpin spatial patterning of gene expression in C4 leaves.
PMID:29432183
Characterization of a new GmFAD3A allele in Brazilian CS303TNKCA soybean cultivar.
PMID:29397403
Survey of Candidate Genes for Maize Resistance to Infection by Aspergillus flavus and/or Aflatoxin Contamination.
PMID:29385107
Genome-wide identification, classification, and expression of phytocyanins in Populus trichocarpa.
PMID:29383450
Defended to the Nines: 25 Years of Resistance Gene Cloning Identifies Nine Mechanisms for R Protein Function.
PMID:29382771
Whole-Genome Sequence Accuracy Is Improved by Replication in a Population of Mutagenized Sorghum.
PMID:29378822
Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta.
PMID:29367617
Specific Upregulation of a Cotton Phytoene Synthase Gene Produces Golden Cottonseeds with Enhanced Provitamin A.
PMID:29358599
Genome-wide comparative analysis of papain-like cysteine protease family genes in castor bean and physic nut.
PMID:29321580
Suppression of a single BAHD gene in Setaria viridis causes large, stable decreases in cell wall feruloylation and increases biomass digestibility.
PMID:29315591
Quantile regression for genome-wide association study of flowering time-related traits in common bean.
PMID:29300788
Correction: Wentao Wu, et al. Evolution Analysis of the Aux/IAA Gene Family in Plants Shows Dual Origins and Variable Nuclear Localization Signals. Int. J. Mol. Sci. 2017, 18, 2107.
PMID:29300308
A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees.
PMID:29298676
Root lodging is a physical stress that changes gene expression from sucrose accumulation to degradation in sorghum.
PMID:29298675
Divergent evolutionary patterns of the MAPK cascade genes in Brassica rapa and plant phylogenetics.
PMID:29285397
An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench).
PMID:29273003
Parallel evolution of the POQR prolyl oligo peptidase gene conferring plant quantitative disease resistance.
PMID:29272270
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure.
PMID:29259172
Genome assembly of the Pink Ipê (Handroanthus impetiginosus, Bignoniaceae), a highly valued, ecologically keystone Neotropical timber forest tree.
PMID:29253216
Molecular Characterization and Co-expression Analysis of the SnRK2 Gene Family in Sugarcane (Saccharum officinarum L.).
PMID:29247208
Mutations in the Arabidopsis AtMRS2-11/AtMGT10/VAR5 Gene Cause Leaf Reticulation.
PMID:29234332
LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons.
PMID:29233850
Prediction of cassava protein interactome based on interolog method.
PMID:29222529
EUCANEXT: an integrated database for the exploration of genomic and transcriptomic data from Eucalyptus species.
PMID:29220468
MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data.
PMID:29220435
Genome-Wide Analysis of Grain Yield Stability and Environmental Interactions in a Multiparental Soybean Population.
PMID:29217731
Agronomic performance of Populus deltoides trees engineered for biofuel production.
PMID:29213313
Cell-Type Transcriptomes of the Multicellular Green Alga Volvox carteri Yield Insights into the Evolutionary Origins of Germ and Somatic Differentiation Programs.
PMID:29208647
Accuracies of univariate and multivariate genomic prediction models in African cassava.
PMID:29202685
Evolution of intron-poor clades and expression patterns of the glycosyltransferase family 47.
PMID:29196940
Whole transcriptome RNA-Seq analysis reveals extensive cell type-specific compartmentalization in Volvox carteri.
PMID:29179763
Rama: a machine learning approach for ribosomal protein prediction in plants.
PMID:29176736
The Terpene Synthase Gene Family of Carrot (Daucus carota L.): Identification of QTLs and Candidate Genes Associated with Terpenoid Volatile Compounds.
PMID:29170675
A compendium of transcription factor and Transcriptionally active protein coding gene families in cowpea (Vigna unguiculata L.).
PMID:29166879
Mannans and endo-β-mannanase transcripts are located in different seed compartments during Brassicaceae germination.
PMID:29164367
PRGdb 3.0: a comprehensive platform for prediction and analysis of plant disease resistance genes.
PMID:29156057
Genetic dissection of early-season cold tolerance in sorghum: genome-wide association studies for seedling emergence and survival under field and controlled environment conditions.
PMID:29147737
SHORTROOT-Mediated Increase in Stomatal Density Has No Impact on Photosynthetic Efficiency.
PMID:29127261
Genome-Wide Identification and Expression, Protein-Protein Interaction and Evolutionary Analysis of the Seed Plant-Specific BIG GRAIN and BIG GRAIN LIKE Gene Family.
PMID:29118774
Surviving a Dry Future: Abscisic Acid (ABA)-Mediated Plant Mechanisms for Conserving Water under Low Humidity.
PMID:29113039
Genome-wide analysis of MATE transporters and molecular characterization of aluminum resistance in Populus.
PMID:29099944
KIXBASE: A comprehensive web resource for identification and exploration of KIX domains.
PMID:29097748
Genome-wide identification and expression profile analysis of CCH gene family in Populus.
PMID:29085758
Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
PMID:29085379
Shaping the evolutionary tree of green plants: evidence from the GST family.
PMID:29084977
Comparative epigenomics in the Brassicaceae reveals two evolutionarily conserved modes of PRC2-mediated gene regulation.
PMID:29084582
Characterization of the lamin analogue NMCP2 in the monocot Allium cepa.
PMID:29079971
A transcriptome-SNP-derived linkage map of Apios americana (potato bean) provides insights about genome re-organization and synteny conservation in the phaseoloid legumes.
PMID:29071392
PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics.
PMID:29069403
The transcriptome, extracellular proteome and active secretome of agroinfiltrated Nicotiana benthamiana uncover a large, diverse protease repertoire.
PMID:29055088
PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea.
PMID:29036354
STRIDE: Species Tree Root Inference from Gene Duplication Events.
PMID:29029342
Targeted Next-Generation Sequencing Identification of Mutations in Disease Resistance Gene Analogs (RGAs) in Wild and Cultivated Beets.
PMID:29019931
Dissecting the 'bacon and eggs' phenotype: transcriptomics of post-anthesis colour change in Lotus.
PMID:28981620
Origin of TAA Genes in Charophytes: New Insights into the Controversy over the Origin of Auxin Biosynthesis.
PMID:28979280
qPrimerDB: a thermodynamics-based gene-specific qPCR primer database for 147 organisms.
PMID:28977518
Rootstock influence on iron uptake responses in Citrus leaves and their regulation under the Fe paradox effect.
PMID:28966887
A database for orphan genes in Poaceae.
PMID:28966675
The Huperzia selago Shoot Tip Transcriptome Sheds New Light on the Evolution of Leaves.
PMID:28957460
Genome-wide analysis of Phaseolus vulgaris C2C2-YABBY transcription factors under salt stress conditions.
PMID:28955602
A Transcriptome Approach Toward Understanding Fruit Softening in Persimmon.
PMID:28955353
PEG Induces High Expression of the Cell Cycle Checkpoint Gene WEE1 in Embryogenic Callus of Medicago truncatula: Potential Link between Cell Cycle Checkpoint Regulation and Osmotic Stress.
PMID:28928753
The meiotic regulator JASON utilizes alternative translation initiation sites to produce differentially localized forms.
PMID:28922756
Evidence-based gene models for structural and functional annotations of the oil palm genome.
PMID:28886750
Differentiated transcriptional signatures in the maize landraces of Chiapas, Mexico.
PMID:28886704
Systems Identification and Characterization of Cell Wall Reassembly and Degradation Related Genes in Glycine max (L.) Merill, a Bioenergy Legume.
PMID:28883533
Comprehensive description of genomewide nucleotide and structural variation in short-season soya bean.
PMID:28869792
Protoplast Swelling and Hypocotyl Growth Depend on Different Auxin Signaling Pathways.
PMID:28860155
Vitamin B1 diversity and characterization of biosynthesis genes in cassava.
PMID:28859374
Single-molecule sequencing and Hi-C-based proximity-guided assembly of amaranth (Amaranthus hypochondriacus) chromosomes provide insights into genome evolution.
PMID:28854926
Genome-wide analysis of DUF221 domain-containing gene family in Oryza species and identification of its salinity stress-responsive members in rice.
PMID:28846681
CLE peptide-encoding gene families in Medicago truncatula and Lotus japonicus, compared with those of soybean, common bean and Arabidopsis.
PMID:28839170
Ancestor of land plants acquired the DNA-3-methyladenine glycosylase (MAG) gene from bacteria through horizontal gene transfer.
PMID:28839126
Evolutionarily Conserved Alternative Splicing Across Monocots.
PMID:28839042
Identification of putative QTLs for seedling stage phosphorus starvation response in finger millet (Eleusine coracana L. Gaertn.) by association mapping and cross species synteny analysis.
PMID:28820887
Genome-wide identification and expression analysis of E2 ubiquitin-conjugating enzymes in tomato.
PMID:28819320
Phenotypic and molecular characterization of sweet sorghum accessions for bioenergy production.
PMID:28817696
Time-resolved transcriptome analysis and lipid pathway reconstruction of the oleaginous green microalga Monoraphidium neglectum reveal a model for triacylglycerol and lipid hyperaccumulation.
PMID:28814974
Differential genomic arrangements in Caryophyllales through deep transcriptome sequencing of A. hypochondriacus.
PMID:28786999
Bioinformatics resources for deciphering the biogenesis and action pathways of plant small RNAs.
PMID:28786034
QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii.
PMID:28785268
OsbZIP48, a HY5 Transcription Factor Ortholog, Exerts Pleiotropic Effects in Light-Regulated Development.
PMID:28775143
Genome-wide identification of soybean microRNA responsive to soybean cyst nematodes infection by deep sequencing.
PMID:28768484
The house spider genome reveals an ancient whole-genome duplication during arachnid evolution.
PMID:28756775
Evolution of Daily Gene Co-expression Patterns from Algae to Plants.
PMID:28751903
Antarctic Moss Multiprotein Bridging Factor 1c Overexpression in Arabidopsis Resulted in Enhanced Tolerance to Salt Stress.
PMID:28744295
Genome-wide Analysis and Expression Divergence of the Trihelix family in Brassica Rapa: Insight into the Evolutionary Patterns in Plants.
PMID:28743951
Genome-Wide Linkage and Association Mapping of Halo Blight Resistance in Common Bean to Race 6 of the Globally Important Bacterial Pathogen.
PMID:28736566
Systematic Analysis of Hsf Family Genes in the Brassica napus Genome Reveals Novel Responses to Heat, Drought and High CO2 Stresses.
PMID:28729874
Engineering microbial cell factories for the production of plant natural products: from design principles to industrial-scale production.
PMID:28724386
Tissue and cell-specific transcriptomes in cotton reveal the subtleties of gene regulation underlying the diversity of plant secondary cell walls.
PMID:28720072
miRNAs in the alga Chlamydomonas reinhardtii are not phylogenetically conserved and play a limited role in responses to nutrient deprivation.
PMID:28710366
Spatial regulation of monolignol biosynthesis and laccase genes control developmental and stress-related lignin in flax.
PMID:28705193
Characterization and Functional Analysis of the Poplar Pectate Lyase-Like Gene PtPL1-18 Reveal Its Role in the Development of Vascular Tissues.
PMID:28702042
Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton.
PMID:28693426
Genome-wide characterization of the aldehyde dehydrogenase gene superfamily in soybean and its potential role in drought stress response.
PMID:28687067
Molecular basis of the evolution of alternative tyrosine biosynthetic routes in plants.
PMID:28671678
Genomic fossils reveal adaptation of non-autonomous pararetroviruses driven by concerted evolution of noncoding regulatory sequences.
PMID:28662199
AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula.
PMID:28655750
Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction.
PMID:28651538
Data on the genome-wide identification of CNL R-genes in Setaria italica (L.) P. Beauv.
PMID:28649585
Genome-wide analysis of UDP-glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization.
PMID:28645261
Analysis of MAP kinase MPK4/MEKK1/MKK genes of Carica papaya L. comparative to other plant homologues.
PMID:28642634
A sorghum (Sorghum bicolor) mutant with altered carbon isotope ratio.
PMID:28640841
Genome-Wide Analysis of the RAV Family in Soybean and Functional Identification of GmRAV-03 Involvement in Salt and Drought Stresses and Exogenous ABA Treatment.
PMID:28634481
OrthoReD: a rapid and accurate orthology prediction tool with low computational requirement.
PMID:28633662
Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
PMID:28630437
A reference genome for Nicotiana tabacum enables map-based cloning of homeologous loci implicated in nitrogen utilization efficiency.
PMID:28625162
A Transcriptomics and Comparative Genomics Analysis Reveals Gene Families with a Role in Body Plan Complexity.
PMID:28611798
Knowledge Discovery in Biological Databases for Revealing Candidate Genes Linked to Complex Phenotypes.
PMID:28609292
Genome-wide survey of switchgrass NACs family provides new insights into motif and structure arrangements and reveals stress-related and tissue-specific NACs.
PMID:28596552
CottonFGD: an integrated functional genomics database for cotton.
PMID:28595571
Plant pectin acetylesterase structure and function: new insights from bioinformatic analysis.
PMID:28595570
Increased Power To Dissect Adaptive Traits in Global Sorghum Diversity Using a Nested Association Mapping Population.
PMID:28592497
Detecting early signs of heat and drought stress in Phoenix dactylifera (date palm).
PMID:28570677
In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping.
PMID:28558696
A parts list for fungal cellulosomes revealed by comparative genomics.
PMID:28555641
Selfing in Haploid Plants and Efficacy of Selection: Codon Usage Bias in the Model Moss Physcomitrella patens.
PMID:28549175
Genome Analysis of Conserved Dehydrin Motifs in Vascular Plants.
PMID:28523013
PSA3, a Protein on the Stromal Face of the Thylakoid Membrane, Promotes Photosystem I Accumulation in Cooperation with the Assembly Factor PYG7.
PMID:28522455
OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations.
PMID:28521726
Pyrenoid loss impairs carbon-concentrating mechanism induction and alters primary metabolism in Chlamydomonas reinhardtii.
PMID:28520898
Genetic analysis of the Lf1 gene that controls leaflet number in soybean.
PMID:28516383
Genomewide analysis of the lateral organ boundaries domain gene family in Eucalyptus grandis reveals members that differentially impact secondary growth.
PMID:28499078
Heap: a highly sensitive and accurate SNP detection tool for low-coverage high-throughput sequencing data.
PMID:28498906
Evolutionary Analysis of DELLA-Associated Transcriptional Networks.
PMID:28487716
agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update.
PMID:28472432
Genome-wide analysis and expression patterns of the NAC transcription factor family in Medicago truncatula.
PMID:28461723
Systems biology study of transcriptional and post-transcriptional co-regulatory network sheds light on key regulators involved in important biological processes in Citrus sinensis.
PMID:28461722
Concerted Divergence after Gene Duplication in Polycomb Repressive Complexes.
PMID:28455403
plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters.
PMID:28453650
Functional characterization of the pinoresinol-lariciresinol reductase-2 gene reveals its roles in yatein biosynthesis and flax defense response.
PMID:28451749
Pipeline to Identify Hydroxyproline-Rich Glycoproteins.
PMID:28446635
The plant cell-wall enzyme AtXTH3 catalyses covalent cross-linking between cellulose and cello-oligosaccharide.
PMID:28443615
Evolutionary Analysis of Snf1-Related Protein Kinase2 (SnRK2) and Calcium Sensor (SCS) Gene Lineages, and Dimerization of Rice Homologs, Suggest Deep Biochemical Conservation across Angiosperms.
PMID:28424709
New Insights on Leucine-Rich Repeats Receptor-Like Kinase Orthologous Relationships in Angiosperms.
PMID:28424707
Regulation of CONIFERALDEHYDE 5-HYDROXYLASE expression to modulate cell wall lignin structure in rice.
PMID:28421330
Genome-Wide Analyses of the Soybean F-Box Gene Family in Response to Salt Stress.
PMID:28417911
HopBase: a unified resource for Humulus genomics.
PMID:28415075
Poplar stem transcriptome is massively remodelled in response to single or repeated mechanical stimuli.
PMID:28412928
Reproductive stage physiological and transcriptional responses to salinity stress in reciprocal populations derived from tolerant (Horkuch) and susceptible (IR29) rice.
PMID:28397857
Genomic Scans across Three Eucalypts Suggest that Adaptation to Aridity is a Genome-Wide Phenomenon.
PMID:28391293
Origins and Evolution of Stomatal Development.
PMID:28356502
Isolation and characterization of a promoter responsive to salt, osmotic and dehydration stresses in soybean.
PMID:28350037
Virus-induced gene silencing of the two squalene synthase isoforms of apple tree (Malus × domestica L.) negatively impacts phytosterol biosynthesis, plastid pigmentation and leaf growth.
PMID:28349256
Overexpression of a Domain of Unknown Function 266-containing protein results in high cellulose content, reduced recalcitrance, and enhanced plant growth in the bioenergy crop Populus.
PMID:28344649
Cross-Species Genome-Wide Identification of Evolutionary Conserved MicroProteins.
PMID:28338802
The legume miR1514a modulates a NAC transcription factor transcript to trigger phasiRNA formation in response to drought.
PMID:28338719
An efficient field and laboratory workflow for plant phylotranscriptomic projects.
PMID:28337391
Improving transcriptome de novo assembly by using a reference genome of a related species: Translational genomics from oil palm to coconut.
PMID:28334050
Electromagnetic Field Seems to Not Influence Transcription via CTCT Motif in Three Plant Promoters.
PMID:28326086
RNAi inhibition of feruloyl CoA 6'-hydroxylase reduces scopoletin biosynthesis and post-harvest physiological deterioration in cassava (Manihot esculenta Crantz) storage roots.
PMID:28315989
Natural haplotypes of FLM non-coding sequences fine-tune flowering time in ambient spring temperatures in Arabidopsis.
PMID:28294941
The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity.
PMID:28284188
De novo computational identification of stress-related sequence motifs and microRNA target sites in untranslated regions of a plant translatome.
PMID:28276452
Origin and evolution of transporter substrate specificity within the NPF family.
PMID:28257001
Genome-wide identification and comparative expression analysis of LEA genes in watermelon and melon genomes.
PMID:28250580
Proteome Characterization of Leaves in Common Bean.
PMID:28248269
Arabidopsis Regenerating Protoplast: A Powerful Model System for Combining the Proteomics of Cell Wall Proteins and the Visualization of Cell Wall Dynamics.
PMID:28248244
Comprehensive Analysis of the CDPK-SnRK Superfamily Genes in Chinese Cabbage and Its Evolutionary Implications in Plants.
PMID:28239387
Gene coding for an elongation factor is involved in resistance against powdery mildew in common bean.
PMID:28233030
Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants.
PMID:28228535
Computational Tools for Genomic Studies in Plants.
PMID:28217007
Transcriptional analysis of defense mechanisms in upland tetraploid switchgrass to greenbugs.
PMID:28209137
Experimental Evidence and In Silico Identification of Tryptophan Decarboxylase in Citrus Genus.
PMID:28208655
A sweet story: Bean pod mottle virus transmission dynamics by Mexican bean beetles (Epilachna varivestis).
PMID:28204501
Genome-wide SNP identification, linkage map construction and QTL mapping for seed mineral concentrations and contents in pea (Pisum sativum L.).
PMID:28193168
NorWood: a gene expression resource for evo-devo studies of conifer wood development.
PMID:28186632
Mitochondrial AtTrxo1 is transcriptionally regulated by AtbZIP9 and AtAZF2 and affects seed germination under saline conditions.
PMID:28184497
A Comprehensive Analysis of RALF Proteins in Green Plants Suggests There Are Two Distinct Functional Groups.
PMID:28174582
Survey of the rubber tree genome reveals a high number of cysteine protease-encoding genes homologous to Arabidopsis SAG12.
PMID:28166280
Loss of the Chloroplast Transit Peptide from an Ancestral C3 Carbonic Anhydrase Is Associated with C4 Evolution in the Grass Genus Neurachne.
PMID:28153918
De novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescens.
PMID:28140388
Characterization and Expression Analysis of Common Bean Histone Deacetylase 6 during Development and Cold Stress Response.
PMID:28127547
An advanced reference genome of Trifolium subterraneum L. reveals genes related to agronomic performance.
PMID:28111887
MarpoDB: An Open Registry for Marchantia Polymorpha Genetic Parts.
PMID:28100647
Evolution and structural diversification of Nictaba-like lectin genes in food crops with a focus on soybean (Glycine max).
PMID:28087663
Analysis of Three Sugarcane Homo/Homeologous Regions Suggests Independent Polyploidization Events of Saccharum officinarum and Saccharum spontaneum.
PMID:28082603
GBS-based single dosage markers for linkage and QTL mapping allow gene mining for yield-related traits in sugarcane.
PMID:28077090
Transcriptomic evidence for the control of soybean root isoflavonoid content by regulation of overlapping phenylpropanoid pathways.
PMID:28077078
Alga-PrAS (Algal Protein Annotation Suite): A Database of Comprehensive Annotation in Algal Proteomes.
PMID:28069893
An incoherent feed-forward loop mediates robustness and tunability in a plant immune network.
PMID:28069610
Genome-Wide Association Mapping and Genomic Selection for Alfalfa (Medicago sativa) Forage Quality Traits.
PMID:28068350
Duplication and Divergence of Leucine-Rich Repeat Receptor-Like Protein Kinase (LRR-RLK) Genes in Basal Angiosperm Amborella trichopoda.
PMID:28066499
Plant genome and transcriptome annotations: from misconceptions to simple solutions.
PMID:28062412
Genetic architecture of kernel composition in global sorghum germplasm.
PMID:28056770
PceRBase: a database of plant competing endogenous RNA.
PMID:28053167
Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
PMID:28045578
Freeze-quenched maize mesophyll and bundle sheath separation uncovers bias in previous tissue-specific RNA-Seq data.
PMID:28043950
Forward Genetics by Sequencing EMS Variation-Induced Inbred Lines.
PMID:28040779
SDH6 and SDH7 Contribute to Anchoring Succinate Dehydrogenase to the Inner Mitochondrial Membrane in Arabidopsis thaliana.
PMID:28039307
Transcript Polymorphism Rates in Soybean Seed Tissue Are Increased in a Single Transformant of Glycine max.
PMID:28025595
Reefgenomics.Org - a repository for marine genomics data.
PMID:28025343
Developing integrated crop knowledge networks to advance candidate gene discovery.
PMID:28018846
Molecular Evolution and Expression Divergence of the Aconitase (ACO) Gene Family in Land Plants.
PMID:28018410
Identification and Network-Enabled Characterization of Auxin Response Factor Genes in Medicago truncatula.
PMID:28018393
Identification and Analysis of NaHCO3 Stress Responsive Genes in Wild Soybean (Glycine soja) Roots by RNA-seq.
PMID:28018382
Lotus Base: An integrated information portal for the model legume Lotus japonicus.
PMID:28008948
Structure and Function of the TIR Domain from the Grape NLR Protein RPV1.
PMID:28008335
Concerted Up-regulation of Aldehyde/Alcohol Dehydrogenase (ADHE) and Starch in Chlamydomonas reinhardtii Increases Survival under Dark Anoxia.
PMID:28007962
Genome-Wide Survey of Flavonoid Biosynthesis Genes and Gene Expression Analysis between Black- and Yellow-Seeded Brassica napus.
PMID:27999578
Evolution of floral diversity: genomics, genes and gamma.
PMID:27994132
RNAseq Analysis of Endornavirus-Infected vs. Endornavirus-Free Common Bean (Phaseolus vulgaris) Cultivar Black Turtle Soup.
PMID:27965640
Ty1-copia elements reveal diverse insertion sites linked to polymorphisms among flax (Linum usitatissimum L.) accessions.
PMID:27927184
Genome-wide Analysis of Phosphoenolpyruvate Carboxylase Gene Family and Their Response to Abiotic Stresses in Soybean.
PMID:27924923
Functional Analysis of Cellulose Synthase (CESA) Protein Class Specificity.
PMID:27923988
Comparative phylogenomic analysis provides insights into TCP gene functions in Sorghum.
PMID:27917941
Expression of Flavone Synthase II and Flavonoid 3'-Hydroxylase Is Associated with Color Variation in Tan-Colored Injured Leaves of Sorghum.
PMID:27917182
Crystallographic insight into the evolutionary origins of xyloglucan endotransglycosylases and endohydrolases.
PMID:27859885
Differences in glycosyltransferase family 61 accompany variation in seed coat mucilage composition in Plantago spp.
PMID:27856710
Novel Genomic and Evolutionary Insight of WRKY Transcription Factors in Plant Lineage.
PMID:27853303
The Arabidopsis Polycomb Repressive Complex 1 (PRC1) Components AtBMI1A, B, and C Impact Gene Networks throughout All Stages of Plant Development.
PMID:27837089
Membrane Proteomic Insights into the Physiology and Taxonomy of an Oleaginous Green Microalga.
PMID:27837088
Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas.
PMID:27835957
Transcriptome analysis uncovers key regulatory and metabolic aspects of soybean embryonic axes during germination.
PMID:27824062
Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass.
PMID:27821048
Comparative transcriptome profiling of upland (VS16) and lowland (AP13) ecotypes of switchgrass.
PMID:27812750
RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants.
PMID:27806688
Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.
PMID:27803309
Plant Reactome: a resource for plant pathways and comparative analysis.
PMID:27799469
Integration of omics approaches to understand oil/protein content during seed development in oilseed crops.
PMID:27796489
Eleven years of breeding efforts to combat cassava brown streak disease.
PMID:27795681
Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis.
PMID:27791167
Horizontal gene transfer is more frequent with increased heterotrophy and contributes to parasite adaptation.
PMID:27791104
Plant-Specific Preprotein and Amino Acid Transporter Proteins Are Required for tRNA Import into Mitochondria.
PMID:27789739
Transcriptome analyses provide insights into the phylogeny and adaptive evolution of the mangrove fern genus Acrostichum.
PMID:27782130
PGen: large-scale genomic variations analysis workflow and browser in SoyKB.
PMID:27766951
RAP2.4a Is Transported through the Phloem to Regulate Cold and Heat Tolerance in Papaya Tree (Carica papaya cv. Maradol): Implications for Protection Against Abiotic Stress.
PMID:27764197
Genome-Wide Analysis, Classification, Evolution, and Expression Analysis of the Cytochrome P450 93 Family in Land Plants.
PMID:27760179
Tanscriptomic Study of the Soybean-Fusarium virguliforme Interaction Revealed a Novel Ankyrin-Repeat Containing Defense Gene, Expression of Whose during Infection Led to Enhanced Resistance to the Fungal Pathogen in Transgenic Soybean Plants.
PMID:27760122
PIECE 2.0: an update for the plant gene structure comparison and evolution database.
PMID:27742820
Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon.
PMID:27742753
PMDBase: a database for studying microsatellite DNA and marker development in plants.
PMID:27733507
Recurrent evolution of heat-responsiveness in Brassicaceae COPIA elements.
PMID:27729060
A transcriptomic resource for Douglas-fir seed development and analysis of transcription during late megagametophyte development.
PMID:27699505
Tomato phyE Is Required for Shade Avoidance in the Absence of phyB1 and phyB2.
PMID:27695458
Genome-wide identification of multifunctional laccase gene family in cotton (Gossypium spp.); expression and biochemical analysis during fiber development.
PMID:27679939
Widespread natural variation of DNA methylation within angiosperms.
PMID:27671052
Phosphate uptake kinetics and tissue-specific transporter expression profiles in poplar (Populus × canescens) at different phosphorus availabilities.
PMID:27663513
Genomewide analysis of the lateral organ boundaries domain gene family in Vitis vinifera.
PMID:27659322
Origin of the plant Tm-1-like gene via two independent horizontal transfer events and one gene fusion event.
PMID:27647002
Genome-wide identification and characterization of GRAS transcription factors in sacred lotus (Nelumbo nucifera).
PMID:27635351
Identification, Characterization, and Expression Analysis of Cell Wall Related Genes in Sorghum bicolor (L.) Moench, a Food, Fodder, and Biofuel Crop.
PMID:27630645
Phylogeny and Expression Analyses Reveal Important Roles for Plant PKS III Family during the Conquest of Land by Plants and Angiosperm Diversification.
PMID:27625671
A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter.
PMID:27624837
The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing.
PMID:27624757
De novo Transcriptome Analysis Reveals Distinct Defense Mechanisms by Young and Mature Leaves of Hevea brasiliensis (Para Rubber Tree).
PMID:27619402
Genome-wide Identification of TCP Family Transcription Factors from Populus euphratica and Their Involvement in Leaf Shape Regulation.
PMID:27605130
Genome-wide analysis of lectin receptor-like kinases in Populus.
PMID:27580945
Origination, Expansion, Evolutionary Trajectory, and Expression Bias of AP2/ERF Superfamily in Brassica napus.
PMID:27570529
Metabolic Reconstruction of Setaria italica: A Systems Biology Approach for Integrating Tissue-Specific Omics and Pathway Analysis of Bioenergy Grasses.
PMID:27559337
Genome-wide identification of salinity responsive HSP70s in common bean.
PMID:27558093
The Gene Encoding Dihydroflavonol 4-Reductase Is a Candidate for the anthocyaninless Locus of Rapid Cycling Brassica rapa (Fast Plants Type).
PMID:27548675
Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools.
PMID:27542599
Comparative analyses of ubiquitin-like ATG8 and cysteine protease ATG4 autophagy genes in the plant lineage and cross-kingdom processing of ATG8 by ATG4.
PMID:27540766
3D Sorghum Reconstructions from Depth Images Identify QTL Regulating Shoot Architecture.
PMID:27528244
De novo transcriptome assembly and analysis of differentially expressed genes of two barley genotypes reveal root-zone-specific responses to salt exposure.
PMID:27527578
PoplarGene: poplar gene network and resource for mining functional information for genes from woody plants.
PMID:27515999
Improved hybrid de novo genome assembly of domesticated apple (Malus x domestica).
PMID:27503335
Bioinformatics Approach in Plant Genomic Research.
PMID:27499685
SoyNet: a database of co-functional networks for soybean Glycine max.
PMID:27492285
Comparative genomic analysis of retrogene repertoire in two green algae Volvox carteri and Chlamydomonas reinhardtii.
PMID:27487948
Global identification and expression analysis of stress-responsive genes of the Argonaute family in apple.
PMID:27475441
Genome-wide identification and expression analysis of sulfate transporter (SULTR) genes in potato (Solanum tuberosum L.).
PMID:27473680
The Evolution of the FT/TFL1 Genes in Amaranthaceae and Their Expression Patterns in the Course of Vegetative Growth and Flowering in Chenopodium rubrum.
PMID:27473314
Re-Evaluation of Reportedly Metal Tolerant Arabidopsis thaliana Accessions.
PMID:27467746
IGDD: a database of intronless genes in dicots.
PMID:27465544
On the origin and evolutionary consequences of gene body DNA methylation.
PMID:27457936
The phylogeny of C/S1 bZIP transcription factors reveals a shared algal ancestry and the pre-angiosperm translational regulation of S1 transcripts.
PMID:27457880
Two hAT transposon genes were transferred from Brassicaceae to broomrapes and are actively expressed in some recipients.
PMID:27452947
Analyses of Physcomitrella patens Ankyrin Repeat Proteins by Computational Approach.
PMID:27429806
Grasses suppress shoot-borne roots to conserve water during drought.
PMID:27422554
Genome-wide identification and characterization of R2R3MYB family in Rosaceae.
PMID:27408811
An ancestral stomatal patterning module revealed in the non-vascular land plant Physcomitrella patens.
PMID:27407102
Long-Term Growth of Moss in Microfluidic Devices Enables Subcellular Studies in Development.
PMID:27406170
Genome-scale DNA variant analysis and functional validation of a SNP underlying yellow fruit color in wild strawberry.
PMID:27377763
Diversification of R2R3-MYB Transcription Factors in the Tomato Family Solanaceae.
PMID:27364496
A Genomic Resource for the Development, Improvement, and Exploitation of Sorghum for Bioenergy.
PMID:27356613
SorghumFDB: sorghum functional genomics database with multidimensional network analysis.
PMID:27352859
Functional Characterization of Soybean Glyma04g39610 as a Brassinosteroid Receptor Gene and Evolutionary Analysis of Soybean Brassinosteroid Receptors.
PMID:27338344
The sorghum SWEET gene family: stem sucrose accumulation as revealed through transcriptome profiling.
PMID:27330561
Rice bifunctional phytocystatin is a dual modulator of legumain and papain-like proteases.
PMID:27325119
Conservation and Expression Patterns Divergence of Ascorbic Acid d-mannose/l-galactose Pathway Genes in Brassica rapa.
PMID:27313597
A comprehensive view of the web-resources related to sericulture.
PMID:27307138
Systematic Identification, Evolution and Expression Analysis of the Zea mays PHT1 Gene Family Reveals Several New Members Involved in Root Colonization by Arbuscular Mycorrhizal Fungi.
PMID:27304955
Evolution of Gene Duplication in Plants.
PMID:27288366
nana plant2 Encodes a Maize Ortholog of the Arabidopsis Brassinosteroid Biosynthesis Gene DWARF1, Identifying Developmental Interactions between Brassinosteroids and Gibberellins.
PMID:27288361
Structure of a Berberine Bridge Enzyme-Like Enzyme with an Active Site Specific to the Plant Family Brassicaceae.
PMID:27276217
Bioinformatics resources for pollen.
PMID:27271281
Genome-Wide Association Study of Anthracnose Resistance in Andean Beans (Phaseolus vulgaris).
PMID:27270627
Promises and Challenges of Eco-Physiological Genomics in the Field: Tests of Drought Responses in Switchgrass.
PMID:27246097
Diversity of ABC transporter genes across the plant kingdom and their potential utility in biotechnology.
PMID:27245738
Tissue- and Cell-Specific Cytokinin Activity in Populus × canescens Monitored by ARR5::GUS Reporter Lines in Summer and Winter.
PMID:27242853
Orthology Analysis and In Vivo Complementation Studies to Elucidate the Role of DIR1 during Systemic Acquired Resistance in Arabidopsis thaliana and Cucumis sativus.
PMID:27200039
Using Genotyping by Sequencing to Map Two Novel Anthracnose Resistance Loci in Sorghum bicolor.
PMID:27194807
Heat shock factors in tomatoes: genome-wide identification, phylogenetic analysis and expression profiling under development and heat stress.
PMID:27190703
Plastid-Nuclear Interaction and Accelerated Coevolution in Plastid Ribosomal Genes in Geraniaceae.
PMID:27190001
Theobroma cacao L. pathogenesis-related gene tandem array members show diverse expression dynamics in response to pathogen colonization.
PMID:27189060
Normalization for Relative Quantification of mRNA and microRNA in Soybean Exposed to Various Abiotic Stresses.
PMID:27176476
Diversity and Evolution of Disease Resistance Genes in Barley (Hordeum vulgare L.).
PMID:27168720
Analysis of gene expression and histone modification between C4 and non-C4 homologous genes of PPDK and PCK in maize.
PMID:27161567
An Integrated Bioinformatics Analysis Reveals Divergent Evolutionary Pattern of Oil Biosynthesis in High- and Low-Oil Plants.
PMID:27159078
In situ embryo rescue for generation of wide intra- and interspecific hybrids of Panicum virgatum L.
PMID:27154282
Genome-wide investigation and expression analysis of AP2-ERF gene family in salt tolerant common bean.
PMID:27152109
Molecular evolution analysis of WUSCHEL-related homeobox transcription factor family reveals functional divergence among clades in the homeobox region.
PMID:27150824
SpinachDB: A Well-Characterized Genomic Database for Gene Family Classification and SNP Information of Spinach.
PMID:27148975
Cassava (Manihot esculenta) transcriptome analysis in response to infection by the fungus Colletotrichum gloeosporioides using an oligonucleotide-DNA microarray.
PMID:27138000
Abaxial Greening Phenotype in Hybrid Aspen.
PMID:27137376
Auxin and Cell Wall Invertase Related Signaling during Rice Grain Development.
PMID:27135493
ExactSearch: a web-based plant motif search tool.
PMID:27134638
The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
PMID:27128442
Comprehensive analysis of the polygalacturonase and pectin methylesterase genes in Brassica rapa shed light on their different evolutionary patterns.
PMID:27112365
Learning from Co-expression Networks: Possibilities and Challenges.
PMID:27092161
JBrowse: a dynamic web platform for genome visualization and analysis.
PMID:27072794
Microsomal Omega-3 Fatty Acid Desaturase Genes in Low Linolenic Acid Soybean Line RG10 and Validation of Major Linolenic Acid QTL.
PMID:27066063
Identification and Comparative Analysis of H2O2-Scavenging Enzymes (Ascorbate Peroxidase and Glutathione Peroxidase) in Selected Plants Employing Bioinformatics Approaches.
PMID:27047498
Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants.
PMID:27029936
Independent and Parallel Evolution of New Genes by Gene Duplication in Two Origins of C4 Photosynthesis Provides New Insight into the Mechanism of Phloem Loading in C4 Species.
PMID:27016024
MicroProtein-Mediated Recruitment of CONSTANS into a TOPLESS Trimeric Complex Represses Flowering in Arabidopsis.
PMID:27015278
Proteomic Responses of Switchgrass and Prairie Cordgrass to Senescence.
PMID:27014316
Knockdown of a laccase in Populus deltoides confers altered cell wall chemistry and increased sugar release.
PMID:26997157
Development and Genetic Control of Plant Architecture and Biomass in the Panicoid Grass, Setaria.
PMID:26985990
RNA-dependent RNA polymerase 1 in potato (Solanum tuberosum) and its relationship to other plant RNA-dependent RNA polymerases.
PMID:26979928
Structural modelling and transcriptional responses highlight a clade of PpKAI2-LIKE genes as candidate receptors for strigolactones in Physcomitrella patens.
PMID:26979323
Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
PMID:26977085
ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage.
PMID:26968660
Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean.
PMID:26968518
Broad taxonomic characterization of Verticillium wilt resistance genes reveals an ancient origin of the tomato Ve1 immune receptor.
PMID:26946045
Genome-wide identification and evolutionary analysis of leucine-rich repeat receptor-like protein kinase genes in soybean.
PMID:26935840
Identification and characterization of the Populus trichocarpa CLE family.
PMID:26935217
Computational Identification Raises a Riddle for Distribution of Putative NACHT NTPases in the Genome of Early Green Plants.
PMID:26930396
Transposon Tagging of a Male-Sterility, Female-Sterility Gene, St8, Revealed that the Meiotic MER3 DNA Helicase Activity Is Essential for Fertility in Soybean.
PMID:26930200
Establishing gene models from the Pinus pinaster genome using gene capture and BAC sequencing.
PMID:26922242
Comparative Transcriptomics Indicates a Role for SHORT VEGETATIVE PHASE (SVP) Genes in Mimulus guttatus Vernalization Response.
PMID:26921300
Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes.
PMID:26911872
Comprehensive Genomic Analysis and Expression Profiling of the NOX Gene Families under Abiotic Stresses and Hormones in Plants.
PMID:26907500
Cell wall-related genes studies on peach cultivars with differential susceptibility to woolliness: looking for candidates as indicators of chilling tolerance.
PMID:26905727
Lipid Droplet-Associated Proteins (LDAPs) Are Required for the Dynamic Regulation of Neutral Lipid Compartmentation in Plant Cells.
PMID:26896396
Using intron position conservation for homology-based gene prediction.
PMID:26893356
An effective approach for annotation of protein families with low sequence similarity and conserved motifs: identifying GDSL hydrolases across the plant kingdom.
PMID:26892257
Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens.
PMID:26891798
Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development.
PMID:26887814
In silico analysis of Mn transporters (NRAMP1) in various plant species.
PMID:26878855
Characterization of DWARF14 Genes in Populus.
PMID:26875827
expVIP: a Customizable RNA-seq Data Analysis and Visualization Platform.
PMID:26869702
A toolbox of genes, proteins, metabolites and promoters for improving drought tolerance in soybean includes the metabolite coumestrol and stomatal development genes.
PMID:26861168
Molecular Evolution and Functional Diversification of Replication Protein A1 in Plants.
PMID:26858742
A Developmental Switch of Gene Expression in the Barley Seed Mediated by HvVP1 (Viviparous-1) and HvGAMYB Interactions.
PMID:26858366
Large-Scale Analyses of Angiosperm Nucleotide-Binding Site-Leucine-Rich Repeat Genes Reveal Three Anciently Diverged Classes with Distinct Evolutionary Patterns.
PMID:26839128
Genome-Wide Analysis of the Lysine Biosynthesis Pathway Network during Maize Seed Development.
PMID:26829553
Genome-Wide Identification, Characterization and Expression Analysis of the Chalcone Synthase Family in Maize.
PMID:26828478
The Eucalyptus grandis NBS-LRR Gene Family: Physical Clustering and Expression Hotspots.
PMID:26793216
Identification, duplication, evolution and expression analyses of caleosins in Brassica plants and Arabidopsis subspecies.
PMID:26786939
Chimeric DCL1-Partnering Proteins Provide Insights into the MicroRNA Pathway.
PMID:26779232
Novel Structural and Functional Motifs in cellulose synthase (CesA) Genes of Bread Wheat (Triticum aestivum, L.).
PMID:26771740
Divergence of the bZIP Gene Family in Strawberry, Peach, and Apple Suggests Multiple Modes of Gene Evolution after Duplication.
PMID:26770968
Genome-Wide Identification of Calcium Dependent Protein Kinase Gene Family in Plant Lineage Shows Presence of Novel D-x-D and D-E-L Motifs in EF-Hand Domain.
PMID:26734045
Dosage Sensitivity of RPL9 and Concerted Evolution of Ribosomal Protein Genes in Plants.
PMID:26734020
Genome-wide identification of calcium-dependent protein kinases in soybean and analyses of their transcriptional responses to insect herbivory and drought stress.
PMID:26733237
Retention, Molecular Evolution, and Expression Divergence of the Auxin/Indole Acetic Acid and Auxin Response Factor Gene Families in Brassica Rapa Shed Light on Their Evolution Patterns in Plants.
PMID:26721260
Bioinformatic landscapes for plant transcription factor system research.
PMID:26719053
Laterally Transferred Gene Recruited as a Venom in Parasitoid Wasps.
PMID:26715630
Genome-wide discovery and validation of Eucalyptus small RNAs reveals variable patterns of conservation and diversity across species of Myrtaceae.
PMID:26714854
Physiological and transcriptional analyses of developmental stages along sugarcane leaf.
PMID:26714767
Identification and Characterization of Carboxylesterases from Brachypodium distachyon Deacetylating Trichothecene Mycotoxins.
PMID:26712789
A Putative Chloroplast Thylakoid Metalloprotease VIRESCENT3 Regulates Chloroplast Development in Arabidopsis thaliana.
PMID:26702056
Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing.
PMID:26698853
CONTRAILS: A tool for rapid identification of transgene integration sites in complex, repetitive genomes using low-coverage paired-end sequencing.
PMID:26697366
Evolution of Catkins: Inflorescence Morphology of Selected Salicaceae in an Evolutionary and Developmental Context.
PMID:26697024
Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines.
PMID:26678836
Dehydration-responsive miRNAs in foxtail millet: genome-wide identification, characterization and expression profiling.
PMID:26676987
Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
PMID:26668304
Heterotrimeric G-proteins in Picea abies and their regulation in response to Heterobasidion annosum s.l. infection.
PMID:26654722
Population genomics of pearl millet (Pennisetum glaucum (L.) R. Br.): Comparative analysis of global accessions and Senegalese landraces.
PMID:26654432
Understanding Brassicaceae evolution through ancestral genome reconstruction.
PMID:26653025
Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus.
PMID:26649868
ALCOdb: Gene Coexpression Database for Microalgae.
PMID:26644461
Global analysis of WRKY transcription factor superfamily in Setaria identifies potential candidates involved in abiotic stress signaling.
PMID:26635818
Transcriptional program for nitrogen starvation-induced lipid accumulation in Chlamydomonas reinhardtii.
PMID:26633994
SIFT missense predictions for genomes.
PMID:26633127
Functional testing of a PF02458 homologue of putative rice arabinoxylan feruloyl transferase genes in Brachypodium distachyon.
PMID:26612070
Genome-wide expression profiles of Pyropia haitanensis in response to osmotic stress by using deep sequencing technology.
PMID:26611675
Promoter-based identification of novel non-coding RNAs reveals the presence of dicistronic snoRNA-miRNA genes in Arabidopsis thaliana.
PMID:26607788
Genome-environment associations in sorghum landraces predict adaptive traits.
PMID:26601206
Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae.
PMID:26590211
Genome-wide identification and phylogenetic analysis of plant RNA binding proteins comprising both RNA recognition motifs and contiguous glycine residues.
PMID:26589419
PANTHER version 10: expanded protein families and functions, and analysis tools.
PMID:26578592
GREENC: a Wiki-based database of plant lncRNAs.
PMID:26578586
A pathogenesis related-10 protein CaARP functions as aldo/keto reductase to scavenge cytotoxic aldehydes.
PMID:26577640
Identification of the Elusive Pyruvate Reductase of Chlamydomonas reinhardtii Chloroplasts.
PMID:26574578
The transcriptional landscape of insect galls: psyllid (Hemiptera) gall formation in Hawaiian Metrosideros polymorpha (Myrtaceae).
PMID:26572921
Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos.
PMID:26572793
Comparative Genomics of NAC Transcriptional Factors in Angiosperms: Implications for the Adaptation and Diversification of Flowering Plants.
PMID:26569117
Evolution of the KCS gene family in plants: the history of gene duplication, sub/neofunctionalization and redundancy.
PMID:26563433
A phylogenetic approach to study the origin and evolution of the CRINKLY4 family.
PMID:26557128
Molecular evolution, characterization, and expression analysis of SnRK2 gene family in Pak-choi (Brassica rapa ssp. chinensis).
PMID:26557127
The WRKY transcription factor family and senescence in switchgrass.
PMID:26552372
Legume information system (LegumeInfo.org): a key component of a set of federated data resources for the legume family.
PMID:26546515
New insights into the interplay between codon bias determinants in plants.
PMID:26546225
AIP1 is a novel Agenet/Tudor domain protein from Arabidopsis that interacts with regulators of DNA replication, transcription and chromatin remodeling.
PMID:26538092
C4 Photosynthesis in the Rice Paddy: Insights from the Noxious Weed Echinochloa glabrescens.
PMID:26527656
Efficiency to Discovery Transgenic Loci in GM Rice Using Next Generation Sequencing Whole Genome Re-sequencing.
PMID:26523132
Construction of citrus gene coexpression networks from microarray data using random matrix theory.
PMID:26504573
Transcriptional dynamics of the developing sweet cherry (Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp-associated genes.
PMID:26504533
Transcriptomics analyses of soybean leaf and root samples during water-deficit.
PMID:26484247
Conserved phosphorylation sites in the activation loop of the Arabidopsis phytosulfokine receptor PSKR1 differentially affect kinase and receptor activity.
PMID:26472115
Genome-wide identification and functional analysis of lincRNAs acting as miRNA targets or decoys in maize.
PMID:26470872
Evolution and divergence of SBP-box genes in land plants.
PMID:26467431
Global analysis of uncapped mRNA changes under drought stress and microRNA-dependent endonucleolytic cleavages in foxtail millet.
PMID:26444665
Analysis of the transgenerational iron deficiency stress memory in Arabidopsis thaliana plants.
PMID:26442058
Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae).
PMID:26442024
A Conserved Core of Programmed Cell Death Indicator Genes Discriminates Developmentally and Environmentally Induced Programmed Cell Death in Plants.
PMID:26438786
Substantial genome synteny preservation among woody angiosperm species: comparative genomics of Chinese chestnut (Castanea mollissima) and plant reference genomes.
PMID:26438416
MaizeGDB update: new tools, data and interface for the maize model organism database.
PMID:26432828
Genetics and physiology of cell wall polysaccharides in the model C4 grass, Setaria viridis spp.
PMID:26432387
Candidate Gene Identification with SNP Marker-Based Fine Mapping of Anthracnose Resistance Gene Co-4 in Common Bean.
PMID:26431031
A Comparison of transgenic and wild type soybean seeds: analysis of transcriptome profiles using RNA-Seq.
PMID:26427366
De Novo Transcriptome Assembly in Firmiana danxiaensis, a Tree Species Endemic to the Danxia Landform.
PMID:26427005
Comprehensive analysis of the flowering genes in Chinese cabbage and examination of evolutionary pattern of CO-like genes in plant kingdom.
PMID:26416765
SUVH1, a Su(var)3-9 family member, promotes the expression of genes targeted by DNA methylation.
PMID:26400170
Genome-Wide Identification of the Invertase Gene Family in Populus.
PMID:26393355
Genome-wide cataloging and analysis of alternatively spliced genes in cereal crops.
PMID:26391769
Two cytochromes P450 catalyze S-heterocyclizations in cabbage phytoalexin biosynthesis.
PMID:26389737
The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms.
PMID:26377000
Gene Co-Expression Analysis Inferring the Crosstalk of Ethylene and Gibberellin in Modulating the Transcriptional Acclimation of Cassava Root Growth in Different Seasons.
PMID:26366737
Arabidopsis SEIPIN Proteins Modulate Triacylglycerol Accumulation and Influence Lipid Droplet Proliferation.
PMID:26362606
Positionally-conserved but sequence-diverged: identification of long non-coding RNAs in the Brassicaceae and Cleomaceae.
PMID:26362138
Using RNA-Seq Data to Evaluate Reference Genes Suitable for Gene Expression Studies in Soybean.
PMID:26348924
Tiling Assembly: a new tool for reference annotation-independent transcript assembly and novel gene identification by RNA-sequencing.
PMID:26341416
The origin and evolution of phototropins.
PMID:26322073
Genome sequencing of herb Tulsi (Ocimum tenuiflorum) unravels key genes behind its strong medicinal properties.
PMID:26315624
Down-regulation of p-coumaroyl quinate/shikimate 3'-hydroxylase (C3'H) and cinnamate 4-hydroxylase (C4H) genes in the lignin biosynthetic pathway of Eucalyptus urophylla × E. grandis leads to improved sugar release.
PMID:26312068
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future.
PMID:26309733
In Silico Analysis of Correlations between Protein Disorder and Post-Translational Modifications in Algae.
PMID:26307970
Disease Resistance Gene Analogs (RGAs) in Plants.
PMID:26287177
MORPHEUS, a Webtool for Transcription Factor Binding Analysis Using Position Weight Matrices with Dependency.
PMID:26285209
PhenoMeter: A Metabolome Database Search Tool Using Statistical Similarity Matching of Metabolic Phenotypes for High-Confidence Detection of Functional Links.
PMID:26284240
Living to Die and Dying to Live: The Survival Strategy behind Leaf Senescence.
PMID:26276844
Translational genomics for plant breeding with the genome sequence explosion.
PMID:26269219
Divergent sorting of a balanced ancestral polymorphism underlies the establishment of gene-flow barriers in Capsella.
PMID:26268845
Genetic architecture of cyst nematode resistance revealed by genome-wide association study in soybean.
PMID:26263897
Comprehensive Evolutionary and Expression Analysis of FCS-Like Zinc finger Gene Family Yields Insights into Their Origin, Expansion and Divergence.
PMID:26252898
Tryptophan-Independent Indole-3-Acetic Acid Synthesis: Critical Evaluation of the Evidence.
PMID:26251310
Genome-wide identification of Calcineurin B-Like (CBL) gene family of plants reveals novel conserved motifs and evolutionary aspects in calcium signaling events.
PMID:26245459
OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy.
PMID:26243257
Comparative genomics of pectinacetylesterases: Insight on function and biology.
PMID:26237162
Physiological and Molecular Responses to Excess Boron in Citrus macrophylla W.
PMID:26225859
The roots of future rice harvests.
PMID:26224558
Comparative analysis of the phytocyanin gene family in 10 plant species: a focus on Zea mays.
PMID:26217366
Phytochrome diversity in green plants and the origin of canonical plant phytochromes.
PMID:26215968
Comprehensive Annotation of Physcomitrella patens Small RNA Loci Reveals That the Heterochromatic Short Interfering RNA Pathway Is Largely Conserved in Land Plants.
PMID:26209555
Genome-wide characterization and expression analysis of common bean bHLH transcription factors in response to excess salt concentration.
PMID:26193947
Analysis of Cell Wall-Related Genes in Organs of Medicago sativa L. under Different Abiotic Stresses.
PMID:26193255
Genome-wide annotation and characterization of CLAVATA/ESR (CLE) peptide hormones of soybean (Glycine max) and common bean (Phaseolus vulgaris), and their orthologues of Arabidopsis thaliana.
PMID:26188205
Modulation of Arabidopsis and monocot root architecture by CLAVATA3/EMBRYO SURROUNDING REGION 26 peptide.
PMID:26188203
A TRP conductance modulates repolarization after sensory-dependent depolarization in Chlamydomonas reinhardtii.
PMID:26186626
Mining microsatellites in the peach genome: development of new long-core SSR markers for genetic analyses in five Prunus species.
PMID:26185739
Genome Regions Associated with Functional Performance of Soybean Stem Fibers in Polypropylene Thermoplastic Composites.
PMID:26167917
Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis.
PMID:26162601
Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.
PMID:26150509
DNA methylation and gene expression in Mimulus guttatus.
PMID:26148779
Genome-wide investigation and expression analysis of Sodium/Calcium exchanger gene family in rice and Arabidopsis.
PMID:26134707
Genome-wide association analysis of symbiotic nitrogen fixation in common bean.
PMID:26133733
Genome-Wide Analysis of the NAC Gene Family in Physic Nut (Jatropha curcas L.).
PMID:26125188
Genetical genomics of Populus leaf shape variation.
PMID:26122556
Genome-wide analysis reveals phytohormone action during cassava storage root initiation.
PMID:26118659
De Novo Regulatory Motif Discovery Identifies Significant Motifs in Promoters of Five Classes of Plant Dehydrin Genes.
PMID:26114291
The interactome of soybean GmWRKY53 using yeast 2-hybrid library screening to saturation.
PMID:26102586
The Methylome of Soybean Roots during the Compatible Interaction with the Soybean Cyst Nematode.
PMID:26099268
Computational prediction of miRNAs and their targets in Phaseolus vulgaris using simple sequence repeat signatures.
PMID:26067253
The IDA/IDA-LIKE and PIP/PIP-LIKE gene families in Arabidopsis: phylogenetic relationship, expression patterns, and transcriptional effect of the PIPL3 peptide.
PMID:26062745
A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads.
PMID:26052341
Parallel subfunctionalisation of PsbO protein isoforms in angiosperms revealed by phylogenetic analysis and mapping of sequence variability onto protein structure.
PMID:26051374
Large-Scale Evolutionary Analysis of Genes and Supergene Clusters from Terpenoid Modular Pathways Provides Insights into Metabolic Diversification in Flowering Plants.
PMID:26046541
The maize (Zea mays ssp. mays var. B73) genome encodes 33 members of the purple acid phosphatase family.
PMID:26042133
Identification of Allorecognition Loci in Neurospora crassa by Genomics and Evolutionary Approaches.
PMID:26025978
Glycosyltransferase family 43 is also found in early eukaryotes and has three subfamilies in Charophycean green algae.
PMID:26023931
Identification of regulatory network hubs that control lipid metabolism in Chlamydomonas reinhardtii.
PMID:26022256
The solute specificity profiles of nucleobase cation symporter 1 (NCS1) from Zea mays and Setaria viridis illustrate functional flexibility.
PMID:26022088
Beyond the Western front: targeted proteomics and organelle abundance profiling.
PMID:25999968
Evolutionary Dynamics of the Cellulose Synthase Gene Superfamily in Grasses.
PMID:25999407
The Basic/Helix-Loop-Helix Protein Family in Gossypium: Reference Genes and Their Evolution during Tetraploidization.
PMID:25992947
GraP: platform for functional genomics analysis of Gossypium raimondii.
PMID:25982315
Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales.
PMID:25966996
Identification and distribution of the NBS-LRR gene family in the Cassava genome.
PMID:25948536
Mannans and endo-β-mannanases (MAN) in Brachypodium distachyon: expression profiling and possible role of the BdMAN genes during coleorhiza-limited seed germination.
PMID:25922488
Sequences enhancing cassava mosaic disease symptoms occur in the cassava genome and are associated with South African cassava mosaic virus infection.
PMID:25920485
REGULATOR OF BULB BIOGENESIS1 (RBB1) Is Involved in Vacuole Bulb Formation in Arabidopsis.
PMID:25915922
Elucidating the composition and conservation of the autophagy pathway in photosynthetic eukaryotes.
PMID:25915714
Flooding impairs Fe uptake and distribution in Citrus due to the strong down-regulation of genes involved in Strategy I responses to Fe deficiency in roots.
PMID:25897804
The BioMart community portal: an innovative alternative to large, centralized data repositories.
PMID:25897122
An Evolutionarily Conserved DOF-CONSTANS Module Controls Plant Photoperiodic Signaling.
PMID:25897001
Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.
PMID:25893781
Identification of new members of the MAPK gene family in plants shows diverse conserved domains and novel activation loop variants.
PMID:25888265
Enrichment of Triticum aestivum gene annotations using ortholog cliques and gene ontologies in other plants.
PMID:25887590
Genomics of Volvocine Algae.
PMID:25883411
Genome-Wide Association Study on Resistance to Stalk Rot Diseases in Grain Sorghum.
PMID:25882062
The plant Polycomb repressive complex 1 (PRC1) existed in the ancestor of seed plants and has a complex duplication history.
PMID:25881027
Wild soybean roots depend on specific transcription factors and oxidation reduction related genesin response to alkaline stress.
PMID:25874911
Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants.
PMID:25859541
Beyond the thale: comparative genomics and genetics of Arabidopsis relatives.
PMID:25854181
The evolution of WRKY transcription factors.
PMID:25849216
Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation.
PMID:25849155
Genome-wide identification and characterization of aquaporin gene family in common bean (Phaseolus vulgaris L.).
PMID:25846963
Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing.
PMID:25837578
PTGBase: an integrated database to study tandem duplicated genes in plants.
PMID:25797062
An ontology approach to comparative phenomics in plants.
PMID:25774204
Identification of AGO3-associated miRNAs and computational prediction of their targets in the green alga Chlamydomonas reinhardtii.
PMID:25769981
Fine-mapping of a major QTL controlling angular leaf spot resistance in common bean (Phaseolus vulgaris L.).
PMID:25740562
Appearance and elaboration of the ethylene receptor family during land plant evolution.
PMID:25682121
Distribution and evolution of the lectin family in soybean (Glycine max).
PMID:25679048
Two different rickettsial bacteria invading Volvox carteri.
PMID:25671568
Scanning the effects of ethyl methanesulfonate on the whole genome of Lotus japonicus using second-generation sequencing analysis.
PMID:25660167
Complete plastome sequence of Thalictrum coreanum (Ranunculaceae) and transfer of the rpl32 gene to the nucleus in the ancestor of the subfamily Thalictroideae.
PMID:25652741
Transcriptomic changes due to water deficit define a general soybean response and accession-specific pathways for drought avoidance.
PMID:25644024
Establishing Chlamydomonas reinhardtii as an industrial biotechnology host.
PMID:25641561
Crop Epigenomics: Identifying, Unlocking, and Harnessing Cryptic Variation in Crop Genomes.
PMID:25638564
A complex interplay of tandem- and whole-genome duplication drives expansion of the L-type lectin receptor kinase gene family in the brassicaceae.
PMID:25635042
Genome-wide analysis of alternative splicing landscapes modulated during plant-virus interactions in Brachypodium distachyon.
PMID:25634987
Evidence for active maintenance of phylotranscriptomic hourglass patterns in animal and plant embryogenesis.
PMID:25631928
Molecular evolution and diversification of the Argonaute family of proteins in plants.
PMID:25626325
Developing genome-wide microsatellite markers of bamboo and their applications on molecular marker assisted taxonomy for accessions in the genus Phyllostachys.
PMID:25620112
A transient receptor potential ion channel in Chlamydomonas shares key features with sensory transduction-associated TRP channels in mammals.
PMID:25595824
Genome-wide identification of non-coding RNAs interacted with microRNAs in soybean.
PMID:25566308
Patterns of evolutionary conservation of ascorbic acid-related genes following whole-genome triplication in Brassica rapa.
PMID:25552535
Soybean miR172c targets the repressive AP2 transcription factor NNC1 to activate ENOD40 expression and regulate nodule initiation.
PMID:25549672
CenH3 evolution in diploids and polyploids of three angiosperm genera.
PMID:25547313
Microalgal Metabolic Network Model Refinement through High-Throughput Functional Metabolic Profiling.
PMID:25540776
Transcriptional, posttranscriptional, and posttranslational regulation of SHOOT MERISTEMLESS gene expression in Arabidopsis determines gene function in the shoot apex.
PMID:25524441
Plant Omics Data Center: an integrated web repository for interspecies gene expression networks with NLP-based curation.
PMID:25505034
MOROKOSHI: transcriptome database in Sorghum bicolor.
PMID:25505007
Evolutionary link between metazoan RHIM motif and prion-forming domain of fungal heterokaryon incompatibility factor HET-s/HET-s.
PMID:25500536
Prioritization of candidate genes in QTL regions based on associations between traits and biological processes.
PMID:25492368
Association genetics and expression patterns of a CBF4 homolog in Populus under abiotic stress.
PMID:25481715
AIM: a comprehensive Arabidopsis interactome module database and related interologs in plants.
PMID:25480687
Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case.
PMID:25476999
Evolution of a plant-specific copper chaperone family for chloroplast copper homeostasis.
PMID:25468978
Plant-PrAS: a database of physicochemical and structural properties and novel functional regions in plant proteomes.
PMID:25435546
Plastid DNA insertions in plant nuclear genomes: the sites, abundance and ages, and a predicted promoter analysis.
PMID:25433709
GenomicusPlants: a web resource to study genome evolution in flowering plants.
PMID:25432975
Phylogenetic analysis reveals dynamic evolution of the poly(A)-binding protein gene family in plants.
PMID:25421536
Regulatory interplay between soybean root and soybean cyst nematode during a resistant and susceptible reaction.
PMID:25421055
Ancient horizontal transfer of transaldolase-like protein gene and its role in plant vascular development.
PMID:25420550
Genome-wide analysis of the Hsf family in soybean and functional identification of GmHsf-34 involvement in drought and heat stresses.
PMID:25416131
The SUPERFAMILY 1.75 database in 2014: a doubling of data.
PMID:25414345
Araport: the Arabidopsis information portal.
PMID:25414324
Development of a gene-centered ssr atlas as a resource for papaya (Carica papaya) marker-assisted selection and population genetic studies.
PMID:25393538
A novel approach for multi-domain and multi-gene family identification provides insights into evolutionary dynamics of disease resistance genes in core eudicot plants.
PMID:25380807
diArk--the database for eukaryotic genome and transcriptome assemblies in 2014.
PMID:25378341
RNA-seq analysis and de novo transcriptome assembly of Jerusalem artichoke (Helianthus tuberosus Linne).
PMID:25375764
Methylation affects transposition and splicing of a large CACTA transposon from a MYB transcription factor regulating anthocyanin synthase genes in soybean seed coats.
PMID:25369033
Loss and retention of resistance genes in five species of the Brassicaceae family.
PMID:25365911
A comprehensive analysis of the Cupin gene family in soybean (Glycine max).
PMID:25360675
Evolution and targeting of Omp85 homologs in the chloroplast outer envelope membrane.
PMID:25352854
Genome-wide analysis of Cyclophilin gene family in soybean (Glycine max).
PMID:25348509
Expression level of a flavonoid 3'-hydroxylase gene determines pathogen-induced color variation in sorghum.
PMID:25346182
Natural variation in sensitivity to a loss of chloroplast translation in Arabidopsis.
PMID:25336520
Molecular evolution and transcriptional regulation of the oilseed rape proline dehydrogenase genes suggest distinct roles of proline catabolism during development.
PMID:25326771
Early and delayed long-term transcriptional changes and short-term transient responses during cold acclimation in olive leaves.
PMID:25324298
Populus tremula (European aspen) shows no evidence of sexual dimorphism.
PMID:25318822
Insights into the evolution and diversification of the AT-hook Motif Nuclear Localized gene family in land plants.
PMID:25311531
In silico identification, phylogenetic and bioinformatic analysis of argonaute genes in plants.
PMID:25309901
Metabolic profiling reveals altered sugar and secondary metabolism in response to UGPase overexpression in Populus.
PMID:25287590
PIGD: a database for intronless genes in the Poaceae.
PMID:25270086
Taxonomically restricted genes of Craterostigma plantagineum are modulated in their expression during dehydration and rehydration.
PMID:25262421
Begin at the beginning: A BAC-end view of the passion fruit (Passiflora) genome.
PMID:25260959
Plant protein peptidase inhibitors: an evolutionary overview based on comparative genomics.
PMID:25253557
Phosphate concentration and arbuscular mycorrhizal colonisation influence the growth, yield and expression of twelve PHT1 family phosphate transporters in foxtail millet (Setaria italica).
PMID:25251671
Nucleobase and nucleoside transport and integration into plant metabolism.
PMID:25250038
Advances in Setaria genomics for genetic improvement of cereals and bioenergy grasses.
PMID:25239219
Genome-wide identification and expression analysis of NBS-encoding genes in Malus x domestica and expansion of NBS genes family in Rosaceae.
PMID:25232838
The contractile vacuole as a key regulator of cellular water flow in Chlamydomonas reinhardtii.
PMID:25217463
Switchgrass (Panicum virgatum L) flag leaf transcriptomes reveal molecular signatures of leaf development, senescence, and mineral dynamics.
PMID:25173486
Structural evolution of differential amino acid effector regulation in plant chorismate mutases.
PMID:25160622
Orthology inference in nonmodel organisms using transcriptomes and low-coverage genomes: improving accuracy and matrix occupancy for phylogenomics.
PMID:25158799
Contrasting metabolism in perenniating structures of upland and lowland switchgrass plants late in the growing season.
PMID:25133804
PlantCAZyme: a database for plant carbohydrate-active enzymes.
PMID:25125445
sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software.
PMID:25120269
The diversity of rice phytocystatins.
PMID:25098420
Genome-wide comparative analysis of tonoplast intrinsic protein (TIP) genes in plants.
PMID:25095751
Chilling acclimation provides immunity to stress by altering regulatory networks and inducing genes with protective functions in cassava.
PMID:25090992
Transcription factors and glyoxylate cycle genes prominent in the transition of soybean cotyledons to the first functional leaves of the seedling.
PMID:25070765
A plant-specific HUA2-LIKE (HULK) gene family in Arabidopsis thaliana is essential for development.
PMID:25070081
Comparative mapping in the Poaceae family reveals translocations in the complex polyploid genome of sugarcane.
PMID:25059596
Characterization of MORE AXILLARY GROWTH genes in Populus.
PMID:25036388
A novel phylogeny and morphological reconstruction of the PIN genes and first phylogeny of the ACC-oxidases (ACOs).
PMID:25018760
Genome and transcriptome sequencing identifies breeding targets in the orphan crop tef (Eragrostis tef).
PMID:25007843
Characterization of a proposed dichorhavirus associated with the citrus leprosis disease and analysis of the host response.
PMID:25004279
A comprehensive set of transcript sequences of the heavy metal hyperaccumulator Noccaea caerulescens.
PMID:24999345
HelitronScanner uncovers a large overlooked cache of Helitron transposons in many plant genomes.
PMID:24982153
Adaptive evolution and divergent expression of heat stress transcription factors in grasses.
PMID:24974883
Plant genomes enclose footprints of past infections by giant virus relatives.
PMID:24969138
Genome-wide analysis of the NADK gene family in plants.
PMID:24968225
The BdGAMYB protein from Brachypodium distachyon interacts with BdDOF24 and regulates transcription of the BdCathB gene upon seed germination.
PMID:24957701
Fine physical and genetic mapping of powdery mildew resistance gene MlIW172 originating from wild emmer (Triticum dicoccoides).
PMID:24955773
The Chlamydomonas genome project: a decade on.
PMID:24950814
Assessment and refinement of eukaryotic gene structure prediction with gene-structure-aware multiple protein sequence alignment.
PMID:24927652
Multiple isoforms of phosphoenolpyruvate carboxylase in the Orchidaceae (subtribe Oncidiinae): implications for the evolution of crassulacean acid metabolism.
PMID:24913627
AtMYB93 is a novel negative regulator of lateral root development in Arabidopsis.
PMID:24902892
DUF581 is plant specific FCS-like zinc finger involved in protein-protein interaction.
PMID:24901469
The transcriptome landscape of early maize meiosis.
PMID:24885405
A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction.
PMID:24885295
Identification of candidate genes and molecular markers for heat-induced brown discoloration of seed coats in cowpea [Vigna unguiculata (L.) Walp].
PMID:24885083
Sequencing of transcriptomes from two Miscanthus species reveals functional specificity in rhizomes, and clarifies evolutionary relationships.
PMID:24884969
Complete sequences of organelle genomes from the medicinal plant Rhazya stricta (Apocynaceae) and contrasting patterns of mitochondrial genome evolution across asterids.
PMID:24884625
Exploring the evolutionary route of the acquisition of betaine aldehyde dehydrogenase activity by plant ALDH10 enzymes: implications for the synthesis of the osmoprotectant glycine betaine.
PMID:24884441
Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.
PMID:24865297
Fine mapping of Co-x, an anthracnose resistance gene to a highly virulent strain of Colletotrichum lindemuthianum in common bean.
PMID:24859268
Extending the model of Arabidopsis telomere length and composition across Brassicaceae.
PMID:24846723
Genomewide analysis of LATERAL ORGAN BOUNDARIES Domain gene family in Zea mays.
PMID:24840825
Changes in RNA Splicing in Developing Soybean (Glycine max) Embryos.
PMID:24833227
Why assembling plant genome sequences is so challenging.
PMID:24832233
Analyzing the microRNA Transcriptome in Plants Using Deep Sequencing Data.
PMID:24832228
RNA-Seq profiling of a defective seed coat mutation in Glycine max reveals differential expression of proline-rich and other cell wall protein transcripts.
PMID:24828743
Transcriptional control of ROS homeostasis by KUODA1 regulates cell expansion during leaf development.
PMID:24806884
Sequence and ionomic analysis of divergent strains of maize inbred line B73 with an altered growth phenotype.
PMID:24804793
Evolution and communication of subcellular compartments: An integrated approach.
PMID:24786592
Genome-wide analysis of the bZIP transcription factors in cucumber.
PMID:24760072
Evolution of gene structure in the conifer Picea glauca: a comparative analysis of the impact of intron size.
PMID:24734980
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns.
PMID:24733898
A survey of plant and algal genomes and transcriptomes reveals new insights into the evolution and function of the cellulose synthase superfamily.
PMID:24708035
High-Throughput Genotyping of Green Algal Mutants Reveals Random Distribution of Mutagenic Insertion Sites and Endonucleolytic Cleavage of Transforming DNA.
PMID:24706510
Isopentenyltransferase-1 (IPT1) knockout in Physcomitrella together with phylogenetic analyses of IPTs provide insights into evolution of plant cytokinin biosynthesis.
PMID:24692654
From plant genomes to protein families: computational tools.
PMID:24688740
Cross-family translational genomics of abiotic stress-responsive genes between Arabidopsis and Medicago truncatula.
PMID:24675968
Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls.
PMID:24666997
Evidence for interactions between the mitochondrial import apparatus and respiratory chain complexes via Tim21-like proteins in Arabidopsis.
PMID:24653731
Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation.
PMID:24653211
Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.
PMID:24647006
Shared origins of a key enzyme during the evolution of C4 and CAM metabolism.
PMID:24638902
AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae.
PMID:24628857
A high-resolution genetic map of yellow monkeyflower identifies chemical defense QTLs and recombination rate variation.
PMID:24626287
Heterotrimeric G proteins in green algae: an early innovation in the evolution of the plant lineage.
PMID:24614119
Genome-wide identification, classification and expression analysis of the heat shock transcription factor family in Chinese cabbage.
PMID:24609322
The AtCathB3 gene, encoding a cathepsin B-like protease, is expressed during germination of Arabidopsis thaliana and transcriptionally repressed by the basic leucine zipper protein GBF1.
PMID:24600022
Phylogeny and molecular evolution analysis of PIN-FORMED 1 in angiosperm.
PMID:24586663
Origin and evolution of metal P-type ATPases in Plantae (Archaeplastida).
PMID:24575101
The histone modification H3K27me3 is retained after gene duplication and correlates with conserved noncoding sequences in Arabidopsis.
PMID:24567304
Arabidopsis VASCULAR-RELATED UNKNOWN PROTEIN1 regulates xylem development and growth by a conserved mechanism that modulates hormone signaling.
PMID:24567189
Single-nucleotide polymorphism markers from de-novo assembly of the pomegranate transcriptome reveal germplasm genetic diversity.
PMID:24558460
CbCBF from Capsella bursa-pastoris enhances cold tolerance and restrains growth in Nicotiana tabacum by antagonizing with gibberellin and affecting cell cycle signaling.
PMID:24532380
Analysis of promoters of microRNAs from a Glycine max degradome library.
PMID:24510705
Secondary cell wall composition and candidate gene expression in developing willow (Salix purpurea) stems.
PMID:24504696
Two Arabidopsis loci encode novel eukaryotic initiation factor 4E isoforms that are functionally distinct from the conserved plant eukaryotic initiation factor 4E.
PMID:24501003
Analysis of global gene expression in Brachypodium distachyon reveals extensive network plasticity in response to abiotic stress.
PMID:24489928
The interplay of light and oxygen in the reactive oxygen stress response of Chlamydomonas reinhardtii dissected by quantitative mass spectrometry.
PMID:24482124
Transcriptome and biochemical analyses revealed a detailed proanthocyanidin biosynthesis pathway in brown cotton fiber.
PMID:24466041
A Sorghum bicolor expression atlas reveals dynamic genotype-specific expression profiles for vegetative tissues of grain, sweet and bioenergy sorghums.
PMID:24456189
Evolutionary classification of ammonium, nitrate, and peptide transporters in land plants.
PMID:24438197
Global changes in mineral transporters in tetraploid switchgrasses (Panicum virgatum L.).
PMID:24427165
Root parasitic plant Orobanche aegyptiaca and shoot parasitic plant Cuscuta australis obtained Brassicaceae-specific strictosidine synthase-like genes by horizontal gene transfer.
PMID:24411025
Isolation and characterization of three cassava elongation factor 1 alpha (MeEF1A) promoters.
PMID:24404183
Correlations between predicted protein disorder and post-translational modifications in plants.
PMID:24403539
Regulation of copper homeostasis and biotic interactions by microRNA 398b in common bean.
PMID:24400089
Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis.
PMID:24386201
Phylogenetic pinpointing of a paleopolyploidy event within the flax genus (Linum) using transcriptomics.
PMID:24380843
A single CMT methyltransferase homolog is involved in CHG DNA methylation and development of Physcomitrella patens.
PMID:24370935
Plant Genome DataBase Japan (PGDBj): a portal website for the integration of plant genome-related databases.
PMID:24363285
Ancient signals: comparative genomics of green plant CDPKs.
PMID:24342084
Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica.
PMID:24341635
POGs2: a web portal to facilitate cross-species inferences about protein architecture and function in plants.
PMID:24340041
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants.
PMID:24334350
Identification of Cassava MicroRNAs under Abiotic Stress.
PMID:24328029
Enzymatic characterization of a glycoside hydrolase family 5 subfamily 7 (GH5_7) mannanase from Arabidopsis thaliana.
PMID:24327260
RNA-Seq transcriptome profiling of upland cotton (Gossypium hirsutum L.) root tissue under water-deficit stress.
PMID:24324815
De novo assembly of the transcriptome of the non-model plant Streptocarpus rexii employing a novel heuristic to recover locus-specific transcript clusters.
PMID:24324652
Snf2 family gene distribution in higher plant genomes reveals DRD1 expansion and diversification in the tomato genome.
PMID:24312269
Recent achievement in gene cloning and functional genomics in soybean.
PMID:24311973
Catalase and NO CATALASE ACTIVITY1 promote autophagy-dependent cell death in Arabidopsis.
PMID:24285797
Extensive variation in the density and distribution of DNA polymorphism in sorghum genomes.
PMID:24265758
Protein subcellular relocalization increases the retention of eukaryotic duplicate genes.
PMID:24265504
MEGANTE: a web-based system for integrated plant genome annotation.
PMID:24253915
P³DB 3.0: From plant phosphorylation sites to protein networks.
PMID:24243849
Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing.
PMID:24225854
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates.
PMID:24225321
S-nitrosoglutathione reductases are low-copy number, cysteine-rich proteins in plants that control multiple developmental and defense responses in Arabidopsis.
PMID:24204370
Unlocking Triticeae genomics to sustainably feed the future.
PMID:24204022
Differential expression of CPKs and cytosolic Ca2+ variation in resistant and susceptible apple cultivars (Malus x domestica) in response to the pathogen Erwinia amylovora and mechanical wounding.
PMID:24192013
Recovery from heat, salt and osmotic stress in Physcomitrella patens requires a functional small heat shock protein PpHsp16.4.
PMID:24188413
Patterns of genomic integration of nuclear chloroplast DNA fragments in plant species.
PMID:24170805
Characterization and transcript profiling of the pectin methylesterase (PME) and pectin methylesterase inhibitor (PMEI) gene families in flax (Linum usitatissimum).
PMID:24168262
Putative DHHC-cysteine-rich domain S-acyltransferase in plants.
PMID:24155879
A systems biology perspective on the role of WRKY transcription factors in drought responses in plants.
PMID:24146023
Identification and annotation of small RNA genes using ShortStack.
PMID:24139974
Molecular characterization of Als1, an acetohydroxyacid synthase mutation conferring resistance to sulfonylurea herbicides in soybean.
PMID:24129392
Genome-wide analysis of the Dof transcription factor gene family reveals soybean-specific duplicable and functional characteristics.
PMID:24098807
Zebrafish Ciliopathy Screen Plus Human Mutational Analysis Identifies C21orf59 and CCDC65 Defects as Causing Primary Ciliary Dyskinesia.
PMID:24094744
Arabidopsis thaliana AMY3 is a unique redox-regulated chloroplastic α-amylase.
PMID:24089528
Nodulin 22, a novel small heat-shock protein of the endoplasmic reticulum, is linked to the unfolded protein response in common bean.
PMID:24073881
Ceratopteris richardii (C-fern): a model for investigating adaptive modification of vascular plant cell walls.
PMID:24065974
Dissecting genome-wide association signals for loss-of-function phenotypes in sorghum flavonoid pigmentation traits.
PMID:24048646
The unique evolution of the programmed cell death 4 protein in plants.
PMID:24041411
Genome-wide discovery and information resource development of DNA polymorphisms in cassava.
PMID:24040164
High-resolution mapping of zym, a recessive gene for Zucchini yellow mosaic virus resistance in cucumber.
PMID:24026172
Insights into the loblolly pine genome: characterization of BAC and fosmid sequences.
PMID:24023741
gff2sequence, a new user friendly tool for the generation of genomic sequences.
PMID:24020993
Species and population level molecular profiling reveals cryptic recombination and emergent asymmetry in the dimorphic mating locus of C. reinhardtii.
PMID:24009520
Genome-wide characterization of the Pectate Lyase-like (PLL) genes in Brassica rapa.
PMID:23999922
Evolution of plant mitochondrial intron-encoded maturases: frequent lineage-specific loss and recurrent intracellular transfer to the nucleus.
PMID:23979261
Mitochondrial ferritin is a functional iron-storage protein in cucumber (Cucumis sativus) roots.
PMID:23967005
GnpIS: an information system to integrate genetic and genomic data from plants and fungi.
PMID:23959375
De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana.
PMID:23957668
A comparative genome analysis of PME and PMEI families reveals the evolution of pectin metabolism in plant cell walls.
PMID:23951288
Starch biosynthesis in cassava: a genome-based pathway reconstruction and its exploitation in data integration.
PMID:23938102
A contribution to the study of plant development evolution based on gene co-expression networks.
PMID:23935602
Genome-wide identification and analysis of membrane-bound O-acyltransferase (MBOAT) gene family in plants.
PMID:23928653
Evaluation of genome sequencing quality in selected plant species using expressed sequence tags.
PMID:23922843
Mobilization of a plant transposon by expression of the transposon-encoded anti-silencing factor.
PMID:23900287
Reannotation and extended community resources for the genome of the non-seed plant Physcomitrella patens provide insights into the evolution of plant gene structures and functions.
PMID:23879659
RNA interference suppression of genes in glycosyl transferase families 43 and 47 in wheat starchy endosperm causes large decreases in arabinoxylan content.
PMID:23878080
Triacylglycerol mobilization is suppressed by brefeldin A in Chlamydomonas reinhardtii.
PMID:23872273
An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains.
PMID:23869221
The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
PMID:23855885
Phylogeny and evolutionary history of glycogen synthase kinase 3/SHAGGY-like kinase genes in land plants.
PMID:23834366
Different evolutionary histories of two cation/proton exchanger gene families in plants.
PMID:23822194
Detailed analysis of putative genes encoding small proteins in legume genomes.
PMID:23802007
Towards uncovering the roles of switchgrass peroxidases in plant processes.
PMID:23802005
Salt-responsive ERF1 regulates reactive oxygen species-dependent signaling during the initial response to salt stress in rice.
PMID:23800963
Open access to tree genomes: the path to a better forest.
PMID:23796049
Discovery of diversity in xylan biosynthetic genes by transcriptional profiling of a heteroxylan containing mucilaginous tissue.
PMID:23761806
Silicon era of carbon-based life: application of genomics and bioinformatics in crop stress research.
PMID:23759993
Evolutionary relationship and structural characterization of the EPF/EPFL gene family.
PMID:23755192
The Capsella rubella genome and the genomic consequences of rapid mating system evolution.
PMID:23749190
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
PMID:23731509
ABCC1, an ATP binding cassette protein from grape berry, transports anthocyanidin 3-O-Glucosides.
PMID:23723325
Arabidopsis thaliana resistance to fusarium oxysporum 2 implicates tyrosine-sulfated peptide signaling in susceptibility and resistance to root infection.
PMID:23717215
The signatures of selection for translational accuracy in plant genes.
PMID:23695187
Comprehensive genome-wide survey, genomic constitution and expression profiling of the NAC transcription factor family in foxtail millet (Setaria italica L.).
PMID:23691254
From manual curation to visualization of gene families and networks across Solanaceae plant species.
PMID:23681907
Evolutionary, molecular and genetic analyses of Tic22 homologues in Arabidopsis thaliana chloroplasts.
PMID:23675512
Optimizing de novo assembly of short-read RNA-seq data for phylogenomics.
PMID:23672450
Evolution of and horizontal gene transfer in the Endornavirus genus.
PMID:23667703
Genome-wide identification, characterization and expression analysis of populus leucine-rich repeat receptor-like protein kinase genes.
PMID:23663326
Kinetics and functional diversity among the five members of the NADP-malic enzyme family from Zea mays, a C4 species.
PMID:23649167
Simultaneous transcriptome analysis of Sorghum and Bipolaris sorghicola by using RNA-seq in combination with de novo transcriptome assembly.
PMID:23638091
PlantGSEA: a gene set enrichment analysis toolkit for plant community.
PMID:23632162
Prediction and identification of natural antisense transcripts and their small RNAs in soybean (Glycine max).
PMID:23617936
Two common bean genotypes with contrasting response to phosphorus deficiency show variations in the microRNA 399-mediated PvPHO2 regulation within the PvPHR1 signaling pathway.
PMID:23591845
RNA-seq of Arabidopsis pollen uncovers novel transcription and alternative splicing.
PMID:23590974
Structure-function analysis of a broad specificity Populus trichocarpa endo-β-glucanase reveals an evolutionary link between bacterial licheninases and plant XTH gene products.
PMID:23572521
A Common histone modification code on C4 genes in maize and its conservation in Sorghum and Setaria italica.
PMID:23564230
Flagellated algae protein evolution suggests the prevalence of lineage-specific rules governing evolutionary rates of eukaryotic proteins.
PMID:23563973
Using RNA-Seq to profile soybean seed development from fertilization to maturity.
PMID:23555009
The hybrid four-CBS-domain KINβγ subunit functions as the canonical γ subunit of the plant energy sensor SnRK1.
PMID:23551663
Transcriptome-wide identification of R2R3-MYB transcription factors in barley with their boron responsive expression analysis.
PMID:23539153
Transcriptome Profiling Identifies Candidate Genes Associated with the Accumulation of Distinct Sulfur γ-Glutamyl Dipeptides in Phaseolus vulgaris and Vigna mungo Seeds.
PMID:23532826
Global analysis of ankyrin repeat domain C3HC4-type RING finger gene family in plants.
PMID:23516424
Flying saucer1 is a transmembrane RING E3 ubiquitin ligase that regulates the degree of pectin methylesterification in Arabidopsis seed mucilage.
PMID:23482858
Wheat Zapper: a flexible online tool for colinearity studies in grass genomes.
PMID:23474942
AGAMOUS-Like15 promotes somatic embryogenesis in Arabidopsis and soybean in part by the control of ethylene biosynthesis and response.
PMID:23457229
Evolution of land plant genes encoding L-Ala-D/L-Glu epimerases (AEEs) via horizontal gene transfer and positive selection.
PMID:23452519
Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species.
PMID:23425243
Common bean (Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency.
PMID:23402340
Developmental and environmental regulation of Aquaporin gene expression across Populus species: divergence or redundancy?
PMID:23393587
Genetic characterization and mapping of the Rht-1 homoeologs and flanking sequences in wheat.
PMID:23381809
Lamin-like analogues in plants: the characterization of NMCP1 in Allium cepa.
PMID:23378381
Targeted mapping of quantitative trait locus regions for rhizomatousness in chromosome SBI-01 and analysis of overwintering in a Sorghum bicolor × S. propinquum population.
PMID:23316113
Rice Annotation Project Database (RAP-DB): an integrative and interactive database for rice genomics.
PMID:23299411
Genome-wide landscape of alternative splicing events in Brachypodium distachyon.
PMID:23297300
PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation.
PMID:23292601
Identification of putative rhamnogalacturonan-II specific glycosyltransferases in Arabidopsis using a combination of bioinformatics approaches.
PMID:23272088
Development of high-throughput SNP-based genotyping in Acacia auriculiformis x A. mangium hybrids using short-read transcriptome data.
PMID:23265623
Toward a comprehensive phylogenetic reconstruction of the evolutionary history of mitogen-activated protein kinases in the plant kingdom.
PMID:23230446
LSM proteins provide accurate splicing and decay of selected transcripts to ensure normal Arabidopsis development.
PMID:23221597
The ARC1 E3 ligase gene is frequently deleted in self-compatible Brassicaceae species and has a conserved role in Arabidopsis lyrata self-pollen rejection.
PMID:23204404
OrysPSSP: a comparative platform for small secreted proteins from rice and other plants.
PMID:23203890
Finding microRNA targets in plants: current status and perspectives.
PMID:23200136
Genomicus: five genome browsers for comparative genomics in eukaryota.
PMID:23193262
PGDD: a database of gene and genome duplication in plants.
PMID:23180799
PIECE: a database for plant gene structure comparison and evolution.
PMID:23180792
Plant polyadenylation factors: conservation and variety in the polyadenylation complex in plants.
PMID:23167306
Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa.
PMID:23167289
PRGdb 2.0: towards a community-based database model for the analysis of R-genes in plants.
PMID:23161682
PMRD: a curated database for genes and mutants involved in plant male reproduction.
PMID:23153247
GmDREB2A;2, a canonical DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN2-type transcription factor in soybean, is posttranslationally regulated and mediates dehydration-responsive element-dependent gene expression.
PMID:23151346
The novel plant protein INAPERTURATE POLLEN1 marks distinct cellular domains and controls formation of apertures in the Arabidopsis pollen exine.
PMID:23136373
Identification of positive selection in disease response genes within members of the Poaceae.
PMID:23073005
The SLEEPER genes: a transposase-derived angiosperm-specific gene family.
PMID:23067104
PlantRNA, a database for tRNAs of photosynthetic eukaryotes.
PMID:23066098
Highly efficient isolation of Populus mesophyll protoplasts and its application in transient expression assays.
PMID:23028673
Aldehyde dehydrogenase (ALDH) superfamily in plants: gene nomenclature and comparative genomics.
PMID:23007552
Transcriptomic analysis of the oleaginous microalga Neochloris oleoabundans reveals metabolic insights into triacylglyceride accumulation.
PMID:23006831
Identification and characterization of orthologs of AtNHX5 and AtNHX6 in Brassica napus.
PMID:22973287
A gene family derived from transposable elements during early angiosperm evolution has reproductive fitness benefits in Arabidopsis thaliana.
PMID:22969437
Characterization of a viral synergism in the monocot Brachypodium distachyon reveals distinctly altered host molecular processes associated with disease.
PMID:22961132
A transcriptomic hourglass in plant embryogenesis.
PMID:22951968
Predicting and analyzing protein phosphorylation sites in plants using musite.
PMID:22934099
Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes.
PMID:22833223
Evolution of the land plant exocyst complexes.
PMID:22826714
Update on sumoylation: defining core components of the plant SUMO conjugation system by phylogenetic comparison.
PMID:22799003
Non-coding RNAs in the plant response to abiotic stress.
PMID:22761008
Taking the next step: building an Arabidopsis information portal.
PMID:22751211
Ubiquitin-mediated control of plant hormone signaling.
PMID:22723083
PsRobot: a web-based plant small RNA meta-analysis toolbox.
PMID:22693224
Horizontal transfer of expressed genes in a parasitic flowering plant.
PMID:22681756
Divergence and Redundancy in CSLD2 and CSLD3 Function During Arabidopsis Thaliana Root Hair and Female Gametophyte Development.
PMID:22661983
The CELLULOSE SYNTHASE-LIKE A and CELLULOSE SYNTHASE-LIKE C families: recent advances and future perspectives.
PMID:22654891
Comparative Genomics and Molecular Characterization of the Maize PIN Family Proteins.
PMID:22629275
Phylogenetic Analysis of the Thylakoid ATP/ADP Carrier Reveals New Insights into Its Function Restricted to Green Plants.
PMID:22629269
The eIF4F and eIFiso4F Complexes of Plants: An Evolutionary Perspective.
PMID:22611336
Reference genome sequence of the model plant Setaria.
PMID:22580951
The ins and outs of algal metal transport.
PMID:22569643
required to maintain repression2 is a novel protein that facilitates locus-specific paramutation in maize.
PMID:22562610
The Cassava Genome: Current Progress, Future Directions.
PMID:22523606
A beginner's guide to eukaryotic genome annotation.
PMID:22510764
The Arabidopsis tetratricopeptide thioredoxin-like gene family is required for osmotic stress tolerance and male sporogenesis.
PMID:22232384
Dissecting plant genomes with the PLAZA comparative genomics platform.
PMID:22198273