SpliceNest

Description

More detailed information about this field from each metasource.

A tool for visualizing splicing of genes from EST data

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Spliceosome Database

Hollywood

Exon annotation database

ECgene

Genome annotation for alternative splicing

JuncDB

Exon-exon Junction database

HEXEvent

Human Exone Splicing Events

ProSAS

Protein Structure and Alternative Splicing: effects of alternative splicing events on protein structure

uORFdb

Upstream ORFs and their effect of translation of downstream CDSs

DBASS5/3

Database of Aberrant Splice Sites: sequences flanking cryptic and de novo 3' and 5' splice sites

APPRIS

Annotates variants with biological data such as protein structural information, functionally important residues, conservation of functional domains and evidence of cross-species conservation.

SpliceInfo

The database provides a means of investigating alternative splicing and can be used for identifying alternative splicing - related motifs, such as the exonic splicing enhancer (ESE), the exonic splici ...

EDAS - EST-Derived Alternative Splicing Database

EDAS is a database of alternative splicing derived from the anlaysis of genomic, protein, mRNA and EST data. It provides classification of elementary alternatives into main types, combined searches fo ...

RetNet

RetNet provides tables of genes and loci causing inherited retinal diseases, such as retinitis pigmentosa, macular degeneration and Usher syndrome, and related information. This information is provide ...

Yeast Intron Database

This searchable database contains information about the location, structure, and function of spliceosomal introns in the nuclear genome of Saccharomyces cerevisiae. Searches produce reports for each i ...

ASPicDB

ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the function ...

L1Base

Functional annotation and prediction of LINE-1 elements

U12DB

U12-type introns are spliced by the U12-dependent spliceosome and are present in the genomes of many higher eukaryotic lineages including plants, chordates and some invertebrates. The resource describ ...

ConsensusPathDB

Database for integration of human functional interactions

SpliceAid-F

A comprehensive knowledge of all the factors involved in splicing, both proteins and RNAs, and of their interaction network is crucial for reaching a better understanding of this process and its funct ...

ChimerDB

ChimerDB is a database of fusion sequences encompassing bioinformatics analysis of mRNA and EST sequences in the GenBank, manual collection of literature data and integration with other well known dat ...

SYSTERS

The integration of SYSTERS, GeneNest and SpliceNest into one framework facilitates the over-all exploration of the whole sequence space covering protein, mRNA and EST sequences, as well as genomic DNA ...

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