SCEptRe

SCEptRe provides weekly updated, non-redundant, user customized benchmark datasets with information on the immune receptor features for receptor-specific epitope predictions. This tool extracts weekly updated 3D complexes of antibody-antigen, TCR-pMHC and MHC-ligand from the Immune Epitope Database (IEDB) and clusters them based on antigens, receptors and epitopes to generate benchmark datasets. Users can customize structural quality and clustering parameters (e.g. resolution, R free factors, antigen or epitope sequence identity) to generate these datasets based on their need.

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Benchmark datasets of immune receptor-epitope structural complexes
PMID: 31601176

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:05.252448

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• Benchmark datasets of immune receptor-epitope structural complexes PubMed citations: 3.

  3 articles citing: Benchmark datasets of immune receptor-epitope structural complexes

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  Peptide-Based Vaccines for Tuberculosis. PMID:35173740

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  An expanded benchmark for antibody-antigen docking and affinity prediction reveals insights into antibody recognition determinants. PMID:33539768

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  Immunoinformatics and Structural Analysis for Identification of Immunodominant Epitopes in SARS-CoV-2 as Potential Vaccine Targets. PMID:32526960

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immunoproteins and antigens

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:05.252448

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protein structure analysis

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:05.252448

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database management

metasource: bio.tools
version: extracted_at: 2022-11-04T11:29:05.252448

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immunoproteins and antigens protein structure analysis data management