Tag: biomarkers


Found 50 sources
Source Match ReputationScore*

Immune Epitope Database


The IEDB provides the scientific community with a central repository of freely accessible epitope data and epitope prediction and analysis resources. The IEDB is a publicly accessible, comprehensive immune epitope database containing peptidic linear ...
100%

The ITHANET Portal


The ITHANET Portal represents an expanding resource for clinicians and researchers dealing with haemoglobinopathies and a port of call for patients in search of professional advice. The ITHANET Portal integrates information on news, events, clinical ...
60%

Exposome-Explorer


Biomarkers of exposure to disease risk factors
52%

IEMbase


Inborn Errors of Metabolism Knowledgebase (IEMbase) accepts an array of biochemical and clinical symptoms from a user and returns a ranked list of possible IEM disorders that match the input profile. In addition, the system can explain the rationale ...
49%

LncTarD


A manually-curated database of experimentally-supported functional lncRNA-target regulations in human diseases. Search and download the information for the Mutual exclusivity. MutExGenome is a database of Mutual Exclusive mutations in mutiple specie ...
49%

FOBI (Food-Biomarker Ontology)


FOBI (Food-Biomarker Ontology) is an ontology to represent food intake data and associate it with metabolomic data.
48%

circad


circad is a comprehensive manually curated resource of circular RNA associated with diseases. Circular RNAs (circRNAs) are unique transcript isoforms characterised by back splicing of exon ends to form a covalently closed loop or circular conformatio ...
46%

CIViCmine


CIViCmine is a literature-mined database of clinically relevant cancer biomarkers from data from PubMed and Pubmed Central Open Access subset.
46%

OsteoporosAtlas


Human osteoporosis-related gene database.
46%

ncRPheno


a comprehensive database platform for identification and validation of disease related noncoding RNAs. Mar 26, 2020: ncRPheno was published on the journal of RNA Biology... ncRPheno is a comprehensive database that provides experimentally supported ...
46%

circR2Disease


Predicting circRNA-Disease Associations Based on Improved Collaboration Filtering Recommendation System With Multiple Data. March 31, 2018, the CircR2Disease has been updated. Circular RNAs (circRNAs) are widely expressed in diverse eukaryotic spec ...
46%

CancerTracer


a curated database for intrapatient tumor heterogeneity. CancerTracer is a manually curated and integrated database aims to help researchers to decipher tumor heterogeneity at individual patient level. It contains two types of tumor heterogeneity da ...
46%

SEAweb


the small RNA Expression Atlas web application. Sign in with Google or with you SEA account below. If you have not created an account yet, then please register first. If you have received an eMail from Oasis 2 that the classification or DE analysis ...
45%

PCIR


A database of Plant Chloroplast Inverted Repeats. Plant Chloroplast Inverted Repeats. Welcome to PCIR! Plant Chloroplast Inverted Repeats (PCIR) is an interactive, web-based platform containing various sequenced chloroplast genomes that enables det ...
45%

CGIdb


Genetic Interaction-Based Biomarkers Identification for Drug Resistance and Sensitivity in Cancer Cells | Cancer cells generally harbor hundreds of alterations in the cancer genomes and act as crucial factors in the development and progression of can ...
44%

dBMHCC


dBMHCC is a comprehensive hepatocellular carcinoma (HCC) biomarker database provides a reliable prediction system for novel HCC phosphorylated biomarkers.
44%

TCGA-LGG


Engrailed 1 overexpression as a potential prognostic marker in Lower Grade Glioma.
44%

ncRNAVar


A Manually Curated Database for Identification of Noncoding RNA Variants Associated with Human Diseases. Jun 1, 2018: Startup of the ncRNAVar project.... Sep 10, 2019: The variant mapping was developed...
44%

CancerEnD


A database of cancer associated enhancers. A comprehensive resource on enhancer information for TCGA cancer types. CancerEnD Genome-wide association studies have successfully identified thousands of genomic loci potentially associated with hundreds ...
44%

Alzheimers Disease Biomarker Comprehensive Database (ABCD)


An Alzheimer's Disease Biomarker Comprehensive Database for Humans. It includes the information for all the genetic parameters like mitochondrial genes, polymorphic genes (SNP's), transcription factors, proteins, miRNAs, Associative pathway, and AD b ...
44%

miR2Diabetes


A Literature-Curated Database of microRNA Expression Patterns, in Diabetic Microvascular Complications. miR2Diabetes aims to provide a comprehensive resource of miRNA dysregulation in diabetic microvascular complications (DMC). Each entry in the miR2 ...
44%

markerDB


Biomarkers: chemical, protein, chromosomal and genetic
43%

Coagulopathies & arterial/venous thrombosis in COVID patients: an OMOP dataset


Hosp patients admitted during COVID pandemic with coagulopathies including venous thromboembolic events & bleeds. Granular condition, multi-morbidity, interventions & treatments. Serial physiology, blood biomarkers, ITU spells, outcome. Deeply phenot ...
42%

Risk and outcomes of coagulopathies in acutely unwell adults


Patients admitted with a bleeding or clotting disorder. Granular care pathways. Multi-morbidity, investigations, interventions and treatments. Serial physiology, blood biomarkers, physiotherapy, outcome. Deeply phenotyped. Risk and outcomes of coag ...
42%

Ventilatory strategies and outcomes for patients with COVID: a dataset in OMOP


Hospital patients admitted during the COVID pandemic requiring/at risk of requiring ventilatory support. Granular condition, multi-morbidity, interventions and treatments. Serial physiology, blood biomarkers, ITU spells, outcome. Deeply phenotyped ...
42%

The impact of COVID on hospitalised patients with COPD; a dataset in OMOP


Hospital patients admitted during the COVID pandemic with a focus on COPD. Granular condition, multi-morbidity. Serial physiology, blood biomarkers, treatments, interventions, ITU spells, outcome, pre/post admission healthcare use. Deeply phenotyped ...
42%

The impact of hospitalised patients with COPD: from admission to outcome


Patients admitted with a COPD related event. Granular care pathways. Multi-morbidity, investigations, interventions and treatments. Serial physiology, blood biomarkers, physiotherapy, outcome. Deeply phenotyped. The impact of hospitalised patients ...
42%

Clinical response thresholds (acuity) in acutely unwell patients: onset-outcome


Hospital patient acuity scores (2004 onwards). Granular condition, ethnicity, multi-morbidity. Serial physiology, blood biomarkers, treatments, interventions, ITU spells, outcome, pre/post admission healthcare use. Deeply phenotyped, longitudinal. C ...
42%

OMOP dataset: Hospital COVID patients: severity, acuity, therapies, outcomes


Hospital COVID patients 6.01.2020-20.08.2020). Granular severity, ethnicity, co-morbidity. Serial acuity, physiology, blood biomarkers, treatments, ITU, outcome. Deeply phenotyped, longitudinal. OMOP dataset: Hospital COVID patients: severity, acuit ...
42%

The impact of ethnicity and multi-morbidity on C19 hospitalised outcomes


A deeply phenotyped dataset of hospitalised COVID-19 patients in Birmingham; including granular ethnicity and multi-morbidity data confirmed in primary care; physiology, blood biomarkers, treatments, interventions, ITU admissions and outcomes. PIONEE ...
42%

Deeply-phenotyped hospital COVID patients: severity, acuity, therapies, outcomes


Hospital COVID patients (6th Jan 2020 onwards). Granular severity, ethnicity, co-morbidity. Serial physiology, blood biomarkers, images, treatments, ITU, outcome, pre/post admission healthcare use. Deeply phenotyped, longitudinal. Waves 1/ 2 PIONEER ...
42%

Ventilation strategies for patients on intensive care


Mechanical and non-invasive ventilation, tracheostomy. Ventilator settings, tidal volumes and pressures. ECMO, inotropes, other organ support, medications, investigations and serial physiology. The preceding care journey and outcomes Ventilatory stra ...
42%

UHB 2020 Winter Society of Acute Medicine Benchmarking Audit


Society of Acute Medicine Audit data. Hospital patients admitted during the COVID pandemic. Granular care pathways for reconfigured services. Severity, demographics, multi-morbidity, interventions and treatments, outcomes. Flow through hospital. UHBF ...
42%

UHB 2019 Summer Society of Acute Medicine Benchmarking Audit


Society of Acute Medicine Audit data. Hospital patients. Granular care pathways against national guidelines. Severity, demographics, multi-morbidity, completion of review, interventions and treatments, outcomes. Patient flow through hospital. UHBFT B ...
42%

CancerLivER


CancerLivER (Liver Cancer Expression Resource) is a database of liver cancer that maintains gene expression datasets and biomarkers curated from public repositories and literature respectively. It contains the following three modules for extracting a ...
40%

BDdb


BDdb is a comprehensive database associated with birth-defect-related diseases. It consists of multi-omics datasets involving tens of common birth-defect diseases, and BDdb supplements more than 2000 biomarkers belonging to 22 types of birth defects.
40%

CMTTdb


CMTTdb (The Cancer Molecular-Targeted Therapy database) is an integrated database to store relevant information about molecular targeted agents as well as their combinatorial approaches in clinical trials and studies for cancer treatment. It contains ...
40%

CSF-PR


Essential Features and Use Cases of the Cerebrospinal Fluid Proteome Resource (CSF-PR) | Every year, a large number of published studies present biomarkers for various neurological disorders. Many of these studies are based on mass spectrometry prote ...
40%

ExoBCD


ExoBCD is a comprehensive database for exosomal biomarker discovery in breast cancer.
40%

CRMarker


CRMarker is a manually curated comprehensive resource of both long noncoding and circular cancer RNA markers.
40%

MyomirDB


A unified database and server platform for muscle atrophy myomiRs, coregulatory networks and regulons. A Database of miRNAs during Muscular Atrophy. Defence Institute of Physiology and Allied Sciences,.
40%

HighAltitudeOmicsDB


An integrated resource for High-Altitude associated genes and proteins, interacting networks and semantic-similarities. Around 140 million people live in High Altitude (HA) conditions and even a larger number visit it for tourism, adventure-seeking ...
40%

lncR2metasta


A manually curated database for experimentally supported lncRNAs during various cancer metastatic events. A database for experimentally supported lncRNAs during various cancer metastatic events.
40%

CancerMIRNome


CancerMIRNome is a web server for cancer miRNome interactive analysis and visualization based on the huamn miRNome data of 33 cancer types from The Cancer Genome Atlas (TCGA), and 40 public cancer circulating miRNome profiling datasets from NCBI Gene ...
40%

Genevestigator


High performance search engine for gene expression. It integrates thousands of manually curated, well described public microarray and RNAseq experiments and nicely visualizes gene expression across different biological contexts such as diseases, drug ...
40%

HisgAtlas


A human immunosuppression gene database. HisgAtlas is the first database that stores a list of immunosuppression genes collected by literature mining and manual curation. 995 human immunosuppression genes and 260 associated diseases are collected in ...
40%

HAHmiR DB


A Server Platform For High Altitude Human miRNA-Gene Coregulatory Networks And Associated Regulatory-Circuits. HAHmiR DB (High-Altitude Human miRNA Database) is a unique, comprehensive, curated collection of miRNAs that have been experimentally vali ...
40%

MPIC


Molecular Prognostic Indicators in Cirrhosis Database for Clinical Context-Specific in Silico Prognostic Biomarker Validation. Molecular Prognostic Indicators in Cirrhosis. Database for clinical context-specific in silico prognostic biomarker valid ...
40%

BIONDA - Biomarker Database


The BIONDA biomarker database provides structured information on all biomarker candidates published in PubMed articles. There is no limitation to any kind of diseases. To this end, PubMed article abstracts and renowned databases such as UniProt and H ...
40%

Project Achilles


Project Achilles is a systematic effort aimed at identifying and cataloging genetic vulnerabilities across hundreds of genomically characterized cancer cell lines. The project uses genome-wide genetic perturbation reagents (shRNAs or Cas9/sgRNAs) to ...
40%

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