Tag: infection

The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts. Releases: https://githu ...

The IEDB provides the scientific community with a central repository of freely accessible epitope data and epitope prediction and analysis resources. The IEDB is a publicly accessible, comprehensive immune epitope database containing peptidic linear ...

The euHCVdb is mainly oriented towards protein sequence, structure and function analyses and structural biology of Hepatitis C Virus.

The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and ...

In order to raise the standards of research and publication, a CONSORT equivalent for these largely quasi-experimental studies has been prepared by the authors of two relevant systematic reviews undertaken for the HTA and the Cochrane Collaboration. ...

OHPI is a community-driven ontology of host-pathogen interactions (OHPI) and represents the virulence factors (VFs) and how the mutants of VFs in the Victors database become less virulence inside a host organism or host cells. It is also developed to ...

An ontology of infectious disease epidemiology and ecology (a.k.a. population biology).

The Infectious Diseases Data Observatory (IDDO) assembles clinical, laboratory and epidemiological data on a collaborative platform to be shared with the research and humanitarian communities. The data are analysed to generate reliable evidence and i ...

PHIDIAS is a web-based database and analysis system that aims to manually curate, computationally analyze, and address different scientific issues in the areas of pathogen-host interactions (PHI, or called host-pathogen interactions or HPI). PHIDIAS ...

The Brucellosis Ontology is an extension of the Infectious Disease Ontology. It is a biomedical ontology describing the zoonotic disease brucellosis that is caused by Brucella, a facultative intracellular bacterium. The ontology is intended as an aid ...

ClinEpiDB is an open-access online resource for clinical and epidemiologic studies. The website allows users to visualize and subset data directly in the ClinEpiDB browser and explore potential associations. Supporting study documentation aids contex ...

This XML Schema Definition (XSD) contains types for representing infectious disease scenarios for simulation (with and without control measures); diverse kinds of information about epidemics including case count data, seroprevalence study results, in ...

BCCM/IHEM is a fungal culture collection specialized in medical and veterinary isolates. About 15.000 strains are available from all over the world: yeasts and filamentous fungi, pathogens, allergenic species, strains producing mycotoxins, reference ...

Collection of samples and data across the following diseases: Influenza virus (organism) The UCL Infection DNA Bank aims to facilitate research into infectious diseases through the enhanced availability of samples to researchers. This availability cu ...

Community-based sero surveillance study provide an opportunity to answer important questions on the proportion of individuals in the community who have been infected with Covid-19.

Acute presentations of UTIs (2000 to date). Deeply phenotyped, longitudinal granular data. Serial acuity, physiology, microbiology cultures, blood parameters, treatments, interventions, outcomes. Presenting complaints. Catheterisation status.

Over 100K patients hospitalised with Community Acquired Pneumonia (CAP) from January 2000. Granular care pathways. Serial physiology, blood biomarkers, outcome data. Deeply phenotyped. Multi morbidity, investigations, interventions and outcomes.

A deeply phenotyped dataset of hospitalised patients undergoing an emergency or elective cholecystectomy. Longitudinal granular demographics, co-morbidities, laboratory results, physiology, medications, complications including sepsis and outcomes.

Hospitalised sepsis patients (2000-2020) by cause. Deeply phenotyped, longitudinal. Granular ethnicity and multi-morbidity. Serial acuity, physiology, blood parameters, treatments, interventions, ITU spells, outcomes, pre and post sepsis healthcare ...

Granular details of diabetic emergencies and acute admissions associated with diabetes-related health concerns: This includes demographic data with investigations, serial physiology and outcomes. The preceding care journey and outcomes are included.

Eye data for those identified by having an ED admission and acute care for their diabetes at QE Hospital, Birmingham. Key data included are demographics, duration of diabetes, outcomes, comorbidities, national screening diabetic grade and visual data ...

The Ontology of Immune Epitopes (ONTIE) is an effort to represent terms in the immunology domain in a formal ontology with the specific goal of representing experiments that identify and characterize immune epitopes. ONTIE has been developed as a sub ...