Mouse Adult Gross Anatomy Ontology
Names
More detailed information about this field from each metasource.
Mouse Adult Gross Anatomy Ontology
metasource: Fairsharing.org
version: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: releases/2017-02-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MA
MA
metasource: Fairsharing.org
version: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: releases/2017-02-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MA
Names
More detailed information about this field from each metasource.
Mouse Adult Gross Anatomy Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: releases/2017-02-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MA
MA
metasource: Fairsharing.orgversion: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: releases/2017-02-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MA
Names
More detailed information about this field from each metasource.
Mouse Adult Gross Anatomy Ontology
metasource: Fairsharing.orgversion: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: releases/2017-02-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MA
MA
metasource: Fairsharing.orgversion: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: releases/2017-02-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MA
The Mouse Adult Gross Anatomy ontology also has aliases of 'Mouse Anatomy' or 'Mouse anatomical entity'. The resource is a standard, providing a structured vocabulary for the adult anatomy of the mouse. This ontology is part of the Gene Expression Database (GDX) Project of the Jackson Laboratory.
Description
More detailed information about this field from each metasource.
The Mouse Adult Gross Anatomy ontology also has aliases of 'Mouse Anatomy' or 'Mouse anatomical entity'. The resource is a standard, providing a structured vocabulary for the adult anatomy of the mouse. This ontology is part of the Gene Expression Database (GDX) Project of the Jackson Laboratory.
metasource: Fairsharing.orgversion: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
A structured controlled vocabulary of the adult anatomy of the mouse (Mus).
metasource: Biontology / Bioportalversion: releases/2017-02-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MA
Webpage:
http://www.informatics.jax.org/searches/AMA_form.shtmlWebpage
More detailed information about this field from each metasource.
http://www.informatics.jax.org/searches/AMA_form.shtml
metasource: Fairsharing.orgversion: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
metasource: Biontology / Bioportal
version: releases/2017-02-07 extracted_at: 2022-11-04T11:10:15.597147, http://bioportal.bioontology.org/ontologies/MA
Publications:
Publications
More detailed information about this field from each metasource.
The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data
PMID: 15774030
metasource: Fairsharing.org
version: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Publications
More detailed information about this field from each metasource.
The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data
PMID: 15774030
metasource: Fairsharing.org
version: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data
PubMed citations: 90.
90 articles citing: The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data
Murine cerebral organoids develop network of functional neurons and hippocampal brain region identity. PMID:34901791
Matching Biomedical Ontologies: Construction of Matching Clues and Systematic Evaluation of Different Combinations of Matchers. PMID:34420930
A review of auditing techniques for the Unified Medical Language System. PMID:32766692
Gold-standard ontology-based anatomical annotation in the CRAFT Corpus. PMID:31725864
Mouse Phenome Database: a data repository and analysis suite for curated primary mouse phenotype data. PMID:31696236
Comprehensive anatomic ontologies for lung development: A comparison of alveolar formation and maturation within mouse and human lung. PMID:31651362
Biomedical ontology alignment: an approach based on representation learning. PMID:30111369
Nail abnormalities identified in an ageing study of 30 inbred mouse strains. PMID:30074290
Tackling the challenges of matching biomedical ontologies. PMID:29335022
Generating Modeling Data From Repeat-Dose Toxicity Reports. PMID:29155963
Mouse Phenome Database: an integrative database and analysis suite for curated empirical phenotype data from laboratory mice. PMID:29136208
Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates. PMID:28981708
The anatomy of phenotype ontologies: principles, properties and applications. PMID:28387809
Multi-species Ontologies of the Craniofacial Musculoskeletal System. PMID:28217040
Information and organization in public health institutes: an ontology-based modeling of the entities in the reception-analysis-report phases. PMID:27608917
Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design. PMID:27206491
Approaches to Investigating Complex Genetic Traits in a Large-Scale Inbred Mouse Aging Study. PMID:26936752
Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals. PMID:26870952
Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases. PMID:26716837
Genetic determinants of fibro-osseous lesions in aged inbred mice. PMID:26589134
PhenoMiner: from text to a database of phenotypes associated with OMIM diseases. PMID:26507285
Mouse anatomy ontologies: enhancements and tools for exploring and integrating biomedical data. PMID:26208972
Similarity-based search of model organism, disease and drug effect phenotypes. PMID:25763178
An ontology for microbial phenotypes. PMID:25433798
Phenotyping structural abnormalities in mouse embryos using high-resolution episcopic microscopy. PMID:25256713
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon. PMID:25009735
Phenotype ontologies and cross-species analysis for translational research. PMID:24699242
Histopathology reveals correlative and unique phenotypes in a high-throughput mouse phenotyping screen. PMID:24652767
Linking tissues to phenotypes using gene expression profiles. PMID:24634472
CellFinder: a cell data repository. PMID:24304896
Mouse phenome database. PMID:24243846
The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. PMID:24194600
The mouse Gene Expression Database (GXD): 2014 update. PMID:24163257
Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP. PMID:24131519
The ontology of craniofacial development and malformation for translational craniofacial research. PMID:24124010
The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments. PMID:24093723
Toward knowledge support for analysis and interpretation of complex traits. PMID:24079802
The mouse pathology ontology, MPATH; structure and applications. PMID:24033988
Phenotypic characterization of the KK/HlJ inbred mouse strain. PMID:24009271
EMAP/EMAPA ontology of mouse developmental anatomy: 2013 update. PMID:23972281
CELDA -- an ontology for the comprehensive representation of cells in complex systems. PMID:23865855
InterMOD: integrated data and tools for the unification of model organism research. PMID:23652793
PhenoMiner: quantitative phenotype curation at the rat genome database. PMID:23603846
A unified anatomy ontology of the vertebrate skeletal system. PMID:23251424
Supporting conditional mouse mutagenesis with a comprehensive cre characterization resource. PMID:23169059
Manual Gene Ontology annotation workflow at the Mouse Genome Informatics Database. PMID:23110975
Towards improving phenotype representation in OWL. PMID:23046625
The mouse as a model for understanding chronic diseases of aging: the histopathologic basis of aging in inbred mice. PMID:22953031
BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration. PMID:22847375
Improving disease gene prioritization by comparing the semantic similarity of phenotypes in mice with those of human diseases. PMID:22719993
Towards valid and reusable reference alignments - ten basic quality checks for ontology alignments and their application to three different reference data sets. PMID:22541595
The mouse-human anatomy ontology mapping project. PMID:22434834
Populous: a tool for building OWL ontologies from templates. PMID:22373396
Uberon, an integrative multi-species anatomy ontology. PMID:22293552
Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning. PMID:21789201
PhenomeNET: a whole-phenome approach to disease gene discovery. PMID:21737429
Developing a kidney and urinary pathway knowledge base. PMID:21624162
Identifying Granularity Differences between Large Biomedical Ontologies through Rules. PMID:21347114
A common layer of interoperability for biomedical ontologies based on OWL EL. PMID:21343142
An ontology-based comparative anatomy information system. PMID:21146377
The mouse Gene Expression Database (GXD): 2011 update. PMID:21062809
Applying the functional abnormality ontology pattern to anatomical functions. PMID:20618982
Pathbase and the MPATH ontology. Community resources for mouse histopathology. PMID:20587689
Phenotype ontologies for mouse and man: bridging the semantic gap. PMID:20427557
Integrating phenotype ontologies across multiple species. PMID:20064205
The mammalian phenotype ontology: enabling robust annotation and comparative analysis. PMID:20052305
Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology. PMID:19921742
More than a decade of developmental gene expression atlases: where are we now? PMID:19822576
A data-capture tool for mouse pathology phenotyping. PMID:19605915
aGEM: an integrative system for analyzing spatial-temporal gene-expression information. PMID:19592395
Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data. PMID:19426459
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data. PMID:19208196
Muscle Research and Gene Ontology: New standards for improved data integration. PMID:19178689
The Mouse Genome Database genotypes::phenotypes. PMID:18981050
Experience in Aligning Anatomical Ontologies. PMID:18974854
Integrating mouse anatomy and pathology ontologies into a phenotyping database: tools for data capture and training. PMID:18797968
Gene Ontology annotations: what they mean and where they come from. PMID:18460184
The Mouse Tumor Biology database. PMID:18432250
Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). PMID:18327244
Simplified ontologies allowing comparison of developmental mammalian gene expression. PMID:17961239
Representing default knowledge in biomedical ontologies: application to the integration of anatomy and phenotype ontologies. PMID:17925014
Celsius: a community resource for Affymetrix microarray data. PMID:17570842
MPHASYS: a mouse phenotype analysis system. PMID:17553167
The plant structure ontology, a unified vocabulary of anatomy and morphology of a flowering plant. PMID:17142475
The mouse Gene Expression Database (GXD): 2007 update. PMID:17130151
PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing. PMID:17094228
Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference. PMID:16779163
Of mice and men: design of a comparative anatomy information system. PMID:16779137
Of mice and men: aligning mouse and human anatomies. PMID:16779002
The Mammalian Phenotype Ontology as a tool for annotating, analyzing and comparing phenotypic information. PMID:15642099
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organ
metasource: Fairsharing.org
version: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
tissue
metasource: Fairsharing.org
version: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
Tags
More detailed information about this field from each metasource.
organ
metasource: Fairsharing.orgversion: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
tissue
metasource: Fairsharing.orgversion: FAIRsharing.org: MA; Mouse Adult Gross Anatomy Ontology; DOI: https://doi.org/10.25504/FAIRsharing.pdwqcr; Last edited: July 5, 2019, 5:14 p.m.; Last accessed: Jan 03 2022 7:13 p.m.
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