Tag: whole genome sequencing


Found 31 sources
Source Match ReputationScore*

GenBank


GenBank is the NIH genetic sequence database, an annotated collection of all publicly available DNA sequences. The complete release notes for the current version of GenBank are available on the NCBI ftp site. A new release is made every two months. G ...
100%

The European Genome-phenome Archive


The European Genome-phenome Archive (EGA) allows you to explore datasets from genomic studies, provided by a range of data providers. Access to datasets must be approved by the specified Data Access Committee (DAC).
83%

Genomes OnLine Database


The Genomes Online Database provides access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing ...
64%

Comprehensive Antibiotic Resistance Database


A bioinformatic database of antimicrobial resistance genes, their products and associated phenotypes.
62%

CottonGen


CottonGen is a cotton community genomics, genetics and breeding database being developed to enable basic, translational and applied research in cotton. It is being built using the open-source Tripal database infrastructure. CottonGen supercedes Cotto ...
56%

Ensembl Zebrafish Genome Browser


This ensembl website features the zebrafish whole genome shotgun assembly sequence.
53%

Ensembl Rat Genome Browser


The Rat Genome project is an international collaboration to sequence the genome of the brown rat (Rattus norvegicus).
53%

Ensembl Mouse Genome Browser


Analysis of finished and draft mouse genomic clone sequences.
53%

Ensembl Drosophila Genome Browser


Access to the Fly genome through the Ensembl user interface (both for visualisation and data mining).
53%

Ensembl Fugu Genome Browser


Fugu Ensembl is a joint project between The IMCB and the EMBL - EBI to produce and maintain an automatic annotation of the Fugu Genome.
53%

Ensembl C.elegans Genome Browser


Access the data through the Ensembl user interface (both for visualisation and data mining) to provide cross-species integration throughout Ensembl's comparative genomics resources.
53%

Network of Cancer Genes


The Network of Cancer Genes (NCG) contains information on duplicability, evolution, protein-protein and microRNA-gene interaction, function, expression and essentiality of cancer genes from manually curated publications . NCG also provides informatio ...
48%

CMR


The Comprehensive Microbial Resource (CMR) gives access to a central repository of the sequence and annotation of all complete public prokaryotic genomes as well as comparative genomics tools across all of the genomes in the database.
46%

BacWGSTdb


Bacterial whole genome sequence typing database
39%

Virtual Chinese Genome Database


Virtual Chinese Genome Database (VCGDB) is a genome database of the Chinese population based on the whole genome sequencing data of 194 individuals. We are unsure when this database was last updated, and as such we have marked this record as Uncertai ...
38%

Gene4Denovo


an integrated database and analytic platform for de novo mutations in humans. De novo mutations (DNMs) significantly contribute to sporadic diseases, particularly in neuropsychiatric disorders. Whole-exome sequencing (WES) and whole-genome sequencin ...
36%

PGG Han


The Han Chinese Genomes Database (PGG.Han) serves as the central repository of the genomic data of the Han Chinese Genomes Project (Phase I). As is its current version, PGG.Han archives genomic data of 114,783 Han Chinese individuals (a.k.a. Han100 ...
36%

KRGDB


The large-scale variant database of 1722 Koreans based on whole genome sequencing.
35%

MBKbase rice


An integrated omics knowledgebase for molecular breeding in rice. Rice Phenotype Search and Summary. Rice Genotype Search and Summary. Molecular Breeding Knowledge Database. Created with the Personal Edition of HelpNDoc: News and information abou ...
35%

KOREF


Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information. The first Korean Reference Genome. KOREF_S means KOREF_Single.
34%

Animal-ImputeDB


A comprehensive database with multiple animal reference panels for genotype imputation.
34%

MenDeVAR


A Rapid and Accessible Tool That Exploits Genomic Data in Public Health and Clinical Microbiology Applications. Public databases for molecular typing and microbial genome diversity. A collection of open-access, curated databases that integrate popu ...
34%

GTEx Portal


The Genotype-Tissue Expression (GTEx) project is an ongoing effort to build a comprehensive public resource to study tissue-specific gene expression and regulation. Samples were collected from 53 non-diseased tissue sites across nearly 1000 individua ...
34%

Mikan_GB


Integrated database of genome annotation, genomic diversity, and CAPS marker information for mandarin molecular breeding.
33%

cgMLSTatTaiwan


[email protected] is a web service platform for Vibrio cholerae cgMLST profiling and global strain tracking.
32%

resiDB


ResiDB is a user-friendly sequence similarity-dependent database manager for bacteria, fungi, viruses, protozoa, invertebrate, plants, archaea, environmental and whole genome shotgun sequence data. Create a new database Access existing databases Loa ...
32%

GREEN-DB


A framework for the annotation and prioritization of non-coding regulatory variants in whole-genome sequencing. Genomic Regulatory Elements ENcyclopedia. This is the home of the GREEN-DB and companion tools (GREEN-VARAN). Genomic Regulatory Elemen ...
30%

FinaleDB


FinaleDB (FragmentatIoN AnaLysis of cEll-free DNA DataBase) is a comprehensive cell-free DNA (cfDNA) fragmentation pattern database to host uniformly processed and quality controlled paired-end cfDNA WGS datasets.
30%

FAANG metadata analysis specification


The FAANG metadata analysis specification describes the specification for all analysis metadata as part of the larger FAANG metadata guidance project. Analysis metadata needs to contain the following process attributes: input data (a list of files us ...
30%

CoV-Seq


CoV-Seq is a suite of tools and datasets for analysis and visualization of genomes of SARS-CoV-2, the virus that causes COVID-19. Sequences are collected from four major repositories: GISAID, NCBI, EMBL and CNGB.
30%

FGviewer


FGviewer is an online visualization tool for functional features of human fusion genes. FGviewer is aiming for the effective visualization of the functional features of fusion genes for better prioritization of therapeutic target selection. FGviewer ...
30%

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