Japanese Genotype-phenotype Archive
Names
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Japanese Genotype-phenotype Archive
metasource: Fairsharing.org
version: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
JGA
metasource: Fairsharing.org
version: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Japanese Genotype-phenotype Archive
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
JGA
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
Japanese Genotype-phenotype Archive
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
JGA
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
metasource: re3data.org
version: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
The Japanese Genotype-phenotype Archive (JGA) is a service for permanent archiving and sharing of all types of individual-level genetic and de-identified phenotypic data resulting from biomedical research projects. The JGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the JGA. Once processed, all data are encrypted.
Description
More detailed information about this field from each metasource.
The Japanese Genotype-phenotype Archive (JGA) is a service for permanent archiving and sharing of all types of individual-level genetic and de-identified phenotypic data resulting from biomedical research projects. The JGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the JGA. Once processed, all data are encrypted.
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
The Japanese Genotype-phenotype Archive (JGA) is a service for permanent archiving and sharing of all types of individual-level genetic and de-identified phenotypic data resulting from biomedical research projects. The JGA contains exclusive data collected from individuals whose consent agreements authorize data release only for specific research use or to bona fide researchers. Strict protocols govern how information is managed, stored and distributed by the JGA. Once processed, all data are encrypted. Users can contact the JGA team from here. JGA services are provided in collaboration with National Bioscience Database Center (NBDC) of Japan Science and Technology Agency.
metasource: re3data.orgversion: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
Webpage:
https://www.ddbj.nig.ac.jp/jgaWebpage
More detailed information about this field from each metasource.
https://www.ddbj.nig.ac.jp/jga
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
https://www.ddbj.nig.ac.jp/jga/index-e.html
metasource: re3data.orgversion: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
Licence:
Name: DDBJ Policies and DisclaimersLicence name
More detailed information about this field from each metasource.
DDBJ Policies and Disclaimers
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
other
metasource: re3data.orgversion: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://www.ddbj.nig.ac.jp/policies-e.html
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
https://www.ddbj.nig.ac.jp/jga/index-e.html
metasource: re3data.orgversion: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data
PMID: 25477381
metasource: Fairsharing.org
version: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
Publications
More detailed information about this field from each metasource.
The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data
PMID: 25477381
metasource: Fairsharing.org
version: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
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The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data
PubMed citations: 32.
32 articles citing: The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data
DNA Data Bank of Japan (DDBJ) update report 2021. PMID:34751405
Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future. PMID:33711481
Aberrant splicing isoforms detected by full-length transcriptome sequencing as transcripts of potential neoantigens in non-small cell lung cancer. PMID:33397462
DDBJ update: streamlining submission and access of human data. PMID:33156332
Integrative immunogenomic analysis of gastric cancer dictates novel immunological classification and the functional status of tumor-infiltrating cells. PMID:33101677
Premature aging syndrome showing random chromosome number instabilities with CDC20 mutation. PMID:33094908
Focal adhesion ribonucleoprotein complex proteins are major humoral cancer antigens and targets in autoimmune diseases. PMID:33067514
Genomic Profiling Identified ERCC2 E606Q Mutation in Helicase Domain Respond to Platinum-Based Neoadjuvant Therapy in Urothelial Bladder Cancer. PMID:32984035
Identification of long non-coding RNAs in advanced prostate cancer associated with androgen receptor splicing factors. PMID:32704143
Integrated multiomics analysis of hepatoblastoma unravels its heterogeneity and provides novel druggable targets. PMID:32656360
Proteogenomic analysis of granulocyte macrophage colony- stimulating factor autoantibodies in the blood of a patient with autoimmune pulmonary alveolar proteinosis. PMID:32188922
DDBJ Database updates and computational infrastructure enhancement. PMID:31724722
Tyrosine kinase Eph receptor A6 sensitizes glioma-initiating cells towards bone morphogenetic protein-induced apoptosis. PMID:31483918
New PCNT candidate missense variant in a patient with oral and maxillofacial osteodysplasia: a case report. PMID:31311520
Multi-year whole-blood transcriptome data for the study of onset and progression of Parkinson's Disease. PMID:30952910
NBDC RDF portal: a comprehensive repository for semantic data in life sciences. PMID:30576482
DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data. PMID:30357349
BHD-associated kidney cancer exhibits unique molecular characteristics and a wide variety of variants in chromatin remodeling genes. PMID:29767721
Compound heterozygous TYK2 mutations underlie primary immunodeficiency with T-cell lymphopenia. PMID:29725107
Identification of the genetic and clinical characteristics of neuroblastomas using genome-wide analysis. PMID:29296183
DNA Data Bank of Japan: 30th anniversary. PMID:29040613
Social and Communicative Functions of Informed Consent Forms in East Asia and Beyond. PMID:28775738
Bone morphogenetic protein signaling mediated by ALK-2 and DLX2 regulates apoptosis in glioma-initiating cells. PMID:28459464
Protein Bioinformatics Databases and Resources. PMID:28150231
Genomic and transcriptomic analysis of imatinib resistance in gastrointestinal stromal tumors. PMID:27997714
DNA Data Bank of Japan. PMID:27924010
Value, but high costs in post-deposition data curation. PMID:26861660
Biocuration of functional annotation at the European nucleotide archive. PMID:26615190
DNA data bank of Japan (DDBJ) progress report. PMID:26578571
OpenTein: a database of digital whole-slide images of stem cell-derived teratomas. PMID:26496950
Systems medicine: evolution of systems biology from bench to bedside. PMID:25891169
Biological databases for human research. PMID:25712261
Tags:
Tags
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gene expression data
metasource: Fairsharing.org
version: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
genetic polymorphism
metasource: Fairsharing.org
version: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
genotype
metasource: Fairsharing.org
version: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
phenotype
metasource: Fairsharing.org
version: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
biomedical
metasource: re3data.org
version: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
genetic
metasource: re3data.org
version: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
gene expression data
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
genetic polymorphism
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
genotype
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
phenotype
metasource: Fairsharing.orgversion: FAIRsharing.org: JGA; Japanese Genotype-phenotype Archive; DOI: https://doi.org/10.25504/FAIRsharing.pwgf4p; Last edited: June 22, 2021, noon; Last accessed: Jan 03 2022 7:08 p.m.
biomedical
metasource: re3data.orgversion: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
genetic
metasource: re3data.orgversion: re3data.org: Japanese Genotype-phenotype Archive; editing status 2019-03-09; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMA9 last accessed: 2022-11-04
gene expression polymorphism genotype phenotype biomedical genetic
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