R3HW3J last accessed: 2022-11-04

European Nucleotide Archive (ENA)
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:12.379541

ena
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:12.379541

Other names: ENA, European Nucleotide Archive (ENA), ena

The European Nucleotide Archive (ENA) is a globally comprehensive data resource for nucleotide sequence, spanning raw data, alignments and assemblies, functional and taxonomic annotation and rich contextual data relating to sequenced samples and experimental design. Serving both as the database of record for the output of the world's sequencing activity and as a platform for the management, sharing and publication of sequence data, the ENA provides a portfolio of services for submission, data management, search and retrieval across web and programmatic interfaces. The ENA is part of the International Nucleotide Sequence Database Collaboration (INSDC), which comprises the DNA DataBank of Japan (DDBJ), the European Molecular Biology Laboratory (EMBL), and GenBank at the NCBI. These three organizations exchange data on a daily basis.

Webpage:

http://www.ebi.ac.uk/ena

Licence:

Name: ENA Open Access Statement
URL: https://www.ebi.ac.uk/ena/standards-and-policies

Publications: (8)

Publications
More detailed information about this field from each metasource.

The International Nucleotide Sequence Database Collaboration
PMID: 26657633
metasource: Fairsharing.org
version: FAIRsharing.org: ENA; European Nucleotide Archive; DOI: https://doi.org/10.25504/FAIRsharing.dj8nt8; Last edited: Feb. 23, 2021, 3:55 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

The EMBL Nucleotide Sequence Database
PMID: 14681351
metasource: Fairsharing.org
version: FAIRsharing.org: ENA; European Nucleotide Archive; DOI: https://doi.org/10.25504/FAIRsharing.dj8nt8; Last edited: Feb. 23, 2021, 3:55 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

Facing growth in the European Nucleotide Archive
PMID: 23203883
metasource: Fairsharing.org
version: FAIRsharing.org: ENA; European Nucleotide Archive; DOI: https://doi.org/10.25504/FAIRsharing.dj8nt8; Last edited: Feb. 23, 2021, 3:55 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

European Nucleotide Archive in 2016
PMID: 27899630
metasource: Fairsharing.org
version: FAIRsharing.org: ENA; European Nucleotide Archive; DOI: https://doi.org/10.25504/FAIRsharing.dj8nt8; Last edited: Feb. 23, 2021, 3:55 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:12.379541

Content discovery and retrieval services at the European Nucleotide Archive
PMID: 25404130
metasource: Fairsharing.org
version: FAIRsharing.org: ENA; European Nucleotide Archive; DOI: https://doi.org/10.25504/FAIRsharing.dj8nt8; Last edited: Feb. 23, 2021, 3:55 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

Biocuration of functional annotation at the European nucleotide archive
PMID: 26615190
metasource: Fairsharing.org
version: FAIRsharing.org: ENA; European Nucleotide Archive; DOI: https://doi.org/10.25504/FAIRsharing.dj8nt8; Last edited: Feb. 23, 2021, 3:55 p.m.; Last accessed: Jan 03 2022 7:06 p.m.

https://doi.org/10.1093/nar/gkz1063
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive
PMID: 34096994
metasource: bio.tools
version: extracted_at: 2022-11-04T11:25:12.379541

The International Nucleotide Sequence Database Collaboration PubMed citations: 70.

70 articles citing: The International Nucleotide Sequence Database Collaboration

Quantifying and Cataloguing Unknown Sequences within Human Microbiomes. PMID:35258340
The adaptive evolution of Euryale ferox to the aquatic environment through paleo-hexaploidization. PMID:35218099
Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission. PMID:35197443
New system for archiving integrative structures. PMID:34866606
Population Structure and Genetic Diversity of Two-Rowed Barley Accessions from Kazakhstan Based on SNP Genotyping Data. PMID:34685834
The role of viral genomics in understanding COVID-19 outbreaks in long-term care facilities. PMID:34608459
A Critical Review of the Current Global Ex Situ Conservation System for Plant Agrobiodiversity. II. Strengths and Weaknesses of the Current System and Recommendations for Its Improvement. PMID:34579439
Determination of variable region sequences from hybridoma immunoglobulins that target Mycobacterium tuberculosis virulence factors. PMID:34415957
Poor data stewardship will hinder global genetic diversity surveillance. PMID:34404731
The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types. PMID:34400360
GenoVault: a cloud based genomics repository. PMID:34325724
Taxallnomy: an extension of NCBI Taxonomy that produces a hierarchically complete taxonomic tree. PMID:34325658
Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management. PMID:34184982
Implementing FAIR data management within the German Network for Bioinformatics Infrastructure (de.NBI) exemplified by selected use cases. PMID:33589928
GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians. PMID:33568057
Streamlining data-intensive biology with workflow systems. PMID:33438730
Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. PMID:33279989
Dissecting seed pigmentation-associated genomic loci and genes by employing dual approaches of reference-based and k-mer-based GWAS with 438 Glycine accessions. PMID:33259564
Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing. PMID:32962098
"METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI's sequence read archive". PMID:32883210
Advancing biodiversity assessments with environmental DNA: Long-read technologies help reveal the drivers of Amazonian fungal diversity. PMID:32760545
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. PMID:32652120
Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family Methanoperedenaceae. PMID:32605988
BRIDGE - A Visual Analytics Web Tool for Barley Genebank Genomics. PMID:32595658
Fungal metabarcoding data integration framework for the MycoDiversity DataBase (MDDB). PMID:32463383
Bioinformatics Resources for Plant Abiotic Stress Responses: State of the Art and Opportunities in the Fast Evolving -Omics Era. PMID:32384671
grabseqs: simple downloading of reads and metadata from multiple next-generation sequencing data repositories. PMID:32154830
Organizing genome engineering for the gigabase scale. PMID:32019919
A Bioinformatics Guide to Plant Microbiome Analysis. PMID:31708944
Bioinformatics for Marine Products: An Overview of Resources, Bottlenecks, and Perspectives. PMID:31614509
Prospects of genomic resources available at the global databases for the flora of United Arab Emirates. PMID:31475085
DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products. PMID:31286860
TogoGenome/TogoStanza: modularized Semantic Web genome database. PMID:30624651
Comparative genomics of the major parasitic worms. PMID:30397333
RNAcentral: a hub of information for non-coding RNA sequences. PMID:30395267
A call for public archives for biological image data. PMID:30377375
DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data. PMID:30357349
SonicParanoid: fast, accurate and easy orthology inference. PMID:30032301
Taxonomy and evolution of Aspergillus, Penicillium and Talaromyces in the omics era - Past, present and future. PMID:30002790
MPD: a pathogen genome and metagenome database. PMID:29917040
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level. PMID:29905870
Biocuration: Distilling data into knowledge. PMID:29659566
Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK). PMID:29559822
The international nucleotide sequence database collaboration. PMID:29190397
Ensembl 2018. PMID:29155950
The European Nucleotide Archive in 2017. PMID:29140475
GenBank. PMID:29140468
Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation. PMID:29126148
RefSeq: an update on prokaryotic genome annotation and curation. PMID:29112715
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication. PMID:29106469
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. PMID:29069476
DNA Data Bank of Japan: 30th anniversary. PMID:29040613
A review of methods and databases for metagenomic classification and assembly. PMID:29028872
RefEx, a reference gene expression dataset as a web tool for the functional analysis of genes. PMID:28850115
The metagenomic data life-cycle: standards and best practices. PMID:28637310
GenomeHubs: simple containerized setup of a custom Ensembl database and web server for any species. PMID:28605774
GSA: Genome Sequence Archive<sup/> PMID:28387199
Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation. PMID:28365736
SILVA, RDP, Greengenes, NCBI and OTT - how do these taxonomies compare? PMID:28361695
Microreact: visualizing and sharing data for genomic epidemiology and phylogeography. PMID:28348833
viruSITE-integrated database for viral genomics. PMID:28025349
The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition. PMID:27924013
DNA Data Bank of Japan. PMID:27924010
Virus Variation Resource - improved response to emergent viral outbreaks. PMID:27899678
European Nucleotide Archive in 2016. PMID:27899630
IPD-MHC 2.0: an improved inter-species database for the study of the major histocompatibility complex. PMID:27899604
GenBank. PMID:27899564
WormBase ParaSite - a comprehensive resource for helminth genomics. PMID:27899279
DFAST and DAGA: web-based integrated genome annotation tools and resources. PMID:27867804
Databases: Reminder to deposit DNA sequences. PMID:27172038
The EMBL Nucleotide Sequence Database PubMed citations: 55.

55 articles citing: The EMBL Nucleotide Sequence Database

A chromosome-level genome assembly of the jade perch (Scortum barcoo). PMID:35840598
Going out for dinner-The consumption of agriculture pests by bats in urban areas. PMID:34673777
Biodiversity assessment of tropical shelf eukaryotic communities via pelagic eDNA metabarcoding. PMID:31938523
Establishing arthropod community composition using metabarcoding: Surprising inconsistencies between soil samples and preservative ethanol and homogenate from Malaise trap catches. PMID:31379089
Lactic Acid Bacteria from Argentinean Fermented Foods: Isolation and Characterization for their Potential Use as Starters for Fermentation of Vegetables. PMID:30510483
BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources. PMID:30458802
Metabarcoding of shrimp stomach content: Harnessing a natural sampler for fish biodiversity monitoring. PMID:30358106
DNA metabarcoding unveils multiscale trophic variation in a widespread coastal opportunist. PMID:30276912
BLAST-based validation of metagenomic sequence assignments. PMID:29868286
A High Quality Genome for Mus spicilegus, a Close Relative of House Mice with Unique Social and Ecological Adaptations. PMID:29794166
A Primer on Infectious Disease Bacterial Genomics. PMID:28590251
A transcriptomic insight into the infective juvenile stage of the insect parasitic nematode, Heterorhabditis indica. PMID:26931371
Hemoparasites in a wild primate: Infection patterns suggest interaction of Plasmodium and Babesia in a lemur species. PMID:26767166
A guide to bioinformatics for immunologists. PMID:24363654
Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis. PMID:23799973
Ray Meta: scalable de novo metagenome assembly and profiling. PMID:23259615
VimA-dependent modulation of the secretome in Porphyromonas gingivalis. PMID:23134608
New phylogenetic lineages of the Spirochaetes phylum associated with Clathrina species (Porifera). PMID:20799080
Phenotype-specific bacterial communities in the cold-water coral Lophelia pertusa (Scleractinia) and their implications for the coral's nutrition, health, and distribution. PMID:18849454
The genome of Cyanothece 51142, a unicellular diazotrophic cyanobacterium important in the marine nitrogen cycle. PMID:18812508
Linking microarray reporters with protein functions. PMID:17897448
Identification of internal transcribed spacer sequence motifs in truffles: a first step toward their DNA bar coding. PMID:17601808
A database for coconut crop improvement. PMID:17597858
Fuzzy logic in medicine and bioinformatics. PMID:16883057
2DDB - a bioinformatics solution for analysis of quantitative proteomics data. PMID:16549013
Storing, linking, and mining microarray databases using SRS. PMID:16048644
Identification of a motif that mediates polypyrimidine tract-binding protein-dependent internal ribosome entry. PMID:15998809
The bioinformatics resource for oral pathogens. PMID:15980574
Distribution of immunodeficiency fact files with XML--from Web to WAP. PMID:15978138
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. PMID:15960829
Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts. PMID:15904497
AnoEST: toward A. gambiae functional genomics. PMID:15899967
The Sequence Ontology: a tool for the unification of genome annotations. PMID:15892872
Highly conserved proximal promoter element harbouring paired Sox9-binding sites contributes to the tissue- and developmental stage-specific activity of the matrilin-1 gene. PMID:15804237
Graphical representation of ribosomal RNA probe accessibility data using ARB software package. PMID:15777482
Atlas - a data warehouse for integrative bioinformatics. PMID:15723693
Exploring the plant transcriptome through phylogenetic profiling. PMID:15644465
The path to enlightenment: making sense of genomic and proteomic information. PMID:15629052
VBASE2, an integrative V gene database. PMID:15608286
PlantMarkers--a database of predicted molecular markers from plants. PMID:15608276
openSputnik--a database to ESTablish comparative plant genomics using unsaturated sequence collections. PMID:15608275
IMGT, the international ImMunoGeneTics information system. PMID:15608269
HOPPSIGEN: a database of human and mouse processed pseudogenes. PMID:15608268
RatMap--rat genome tools and data. PMID:15608244
GenBank. PMID:15608212
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. PMID:15608201
E-MSD: an integrated data resource for bioinformatics. PMID:15608192
IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. PMID:15608191
The SYSTERS Protein Family Database in 2005. PMID:15608183
The Universal Protein Resource (UniProt). PMID:15608167
Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. PMID:15590942
Analysis of human mRNAs with the reference genome sequence reveals potential errors, polymorphisms, and RNA editing. PMID:15489323
Gene co-regulation is highly conserved in the evolution of eukaryotes and prokaryotes. PMID:15353560
IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis. PMID:15215425
Public web-based services from the European Bioinformatics Institute. PMID:15215339
Facing growth in the European Nucleotide Archive PubMed citations: 40.

40 articles citing: Facing growth in the European Nucleotide Archive

CRAM 3.1: Advances in the CRAM File Format. PMID:34999766
Whole-Genome Duplication and Purifying Selection Contributes to the Functional Redundancy of Auxin Response Factor (ARF) Genes in Foxtail Millet (Setaria italica L.). PMID:34414231
Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv. PMID:31675414
Ensembl Genomes 2020-enabling non-vertebrate genomic research. PMID:31598706
Ice-Age Climate Adaptations Trap the Alpine Marmot in a State of Low Genetic Diversity. PMID:31080084
Genome-Wide Analysis of LIM Family Genes in Foxtail Millet (Setaria italica L.) and Characterization of the Role of SiWLIM2b in Drought Tolerance. PMID:30875867
No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects. PMID:29806194
Transition to an Aquatic Habitat Permitted the Repeated Loss of the Pleiotropic KLK8 Gene in Mammals. PMID:29145610
Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets. PMID:28865446
PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive. PMID:28369246
The Ensembl gene annotation system. PMID:27337980
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. PMID:27296299
StreptomeDB 2.0--an extended resource of natural products produced by streptomycetes. PMID:26615197
BioDB extractor: customized data extraction system for commonly used bioinformatics databases. PMID:26516349
Assessing the Metabolic Diversity of Streptococcus from a Protein Domain Point of View. PMID:26366735
Tentacle: distributed quantification of genes in metagenomes. PMID:26351566
Optimizing RNA structures by sequence extensions using RNAcop. PMID:26283181
Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards. PMID:26203332
Identification of pneumococcal colonization determinants in the stringent response pathway facilitated by genomic diversity. PMID:25956132
Sambamba: fast processing of NGS alignment formats. PMID:25697820
Genome-wide development of transposable elements-based markers in foxtail millet and construction of an integrated database. PMID:25428892
GenBank. PMID:25414350
Genome-wide investigation and expression profiling of AP2/ERF transcription factor superfamily in foxtail millet (Setaria italica L.). PMID:25409524
Rfam 12.0: updates to the RNA families database. PMID:25392425
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling. PMID:25357249
Identification and molecular characterization of MYB Transcription Factor Superfamily in C4 model plant foxtail millet (Setaria italica L.). PMID:25279462
FmTFDb: a foxtail millet transcription factors database for expediting functional genomics in millets. PMID:25005261
The Scramble conversion tool. PMID:24930138
C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses. PMID:24915771
Genomics and bioinformatics resources for translational science in Rosaceae. PMID:24634697
BCL2DB: database of BCL-2 family members and BH3-only proteins. PMID:24608034
Genome-wide investigation and expression analyses of WD40 protein family in the model plant foxtail millet (Setaria italica L.). PMID:24466268
Ribosomal Database Project: data and tools for high throughput rRNA analysis. PMID:24288368
The European Bioinformatics Institute's data resources 2014. PMID:24271396
Updates to BioSamples database at European Bioinformatics Institute. PMID:24265224
GenBank. PMID:24217914
DDBJ progress report: a new submission system for leading to a correct annotation. PMID:24194602
GeneProf data: a resource of curated, integrated and reusable high-throughput genomics experiments. PMID:24174536
Analysis Tool Web Services from the EMBL-EBI. PMID:23671338
The 2013 Nucleic Acids Research Database Issue and the online molecular biology database collection. PMID:23203983
European Nucleotide Archive in 2016 PubMed citations: 33.

33 articles citing: European Nucleotide Archive in 2016

Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance. PMID:35379360
DBHR: a collection of databases relevant to human research. PMID:35251694
Cell surface fluctuations regulate early embryonic lineage sorting. PMID:35196500
Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission. PMID:35136068
Diversity of cultivable bacteria from deep-sea sediments of the Colombian Caribbean and their potential in bioremediation. PMID:35066712
Cooperative genetic networks drive embryonic stem cell transition from naïve to formative pluripotency. PMID:33687089
Extensive Microbial Processing of Polysaccharides in the South Pacific Gyre via Selfish Uptake and Extracellular Hydrolysis. PMID:33391202
Unlocking the potential of plant phenotyping data through integration and data-driven approaches. PMID:32923745
Bactopia: a Flexible Pipeline for Complete Analysis of Bacterial Genomes. PMID:32753501
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. PMID:32652120
Contents, Construction Methods, Data Resources, and Functions Comparative Analysis of Bacteria Databases. PMID:32071553
Expression Atlas update: from tissues to single cells. PMID:31665515
Anaerobic Degradation of Non-Methane Alkanes by "Candidatus Methanoliparia" in Hydrocarbon Seeps of the Gulf of Mexico. PMID:31431553
Distinct Molecular Trajectories Converge to Induce Naive Pluripotency. PMID:31422912
On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre. PMID:31076426
The Plastisphere - Uncovering tightly attached plastic "specific" microorganisms. PMID:31013334
Characterization of bacterioplankton communities and quantification of organic carbon pools off the Galapagos Archipelago under contrasting environmental conditions. PMID:30533298
MPD: a pathogen genome and metagenome database. PMID:29917040
The NCBI BioCollections Database. PMID:29688360
Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human pre-implantation epiblast. PMID:29361568
The international nucleotide sequence database collaboration. PMID:29190397
Expression Atlas: gene and protein expression across multiple studies and organisms. PMID:29165655
Ensembl 2018. PMID:29155950
GenBank. PMID:29140468
Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families. PMID:29112718
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. PMID:29092050
OverGeneDB: a database of 5' end protein coding overlapping genes in human and mouse genomes. PMID:29069459
The BioStudies database-one stop shop for all data supporting a life sciences study. PMID:29069414
DNA Data Bank of Japan: 30th anniversary. PMID:29040613
ITSoneDB: a comprehensive collection of eukaryotic ribosomal RNA Internal Transcribed Spacer 1 (ITS1) sequences. PMID:29036529
The metagenomic data life-cycle: standards and best practices. PMID:28637310
The EBI search engine: EBI search as a service-making biological data accessible for all. PMID:28472374
Programmatic access to bioinformatics tools from EMBL-EBI update: 2017. PMID:28431173
Content discovery and retrieval services at the European Nucleotide Archive PubMed citations: 28.

28 articles citing: Content discovery and retrieval services at the European Nucleotide Archive

Improving the diagnostic yield of exome- sequencing by predicting gene-phenotype associations using large-scale gene expression analysis. PMID:31253775
EWAS Atlas: a curated knowledgebase of epigenome-wide association studies. PMID:30364969
Prokaryotic and Highly-Repetitive WD40 Proteins: A Systematic Study. PMID:28878378
Automated assembly of species metabolomes through data submission into a public repository. PMID:28830114
Plant specimen contextual data consensus. PMID:28369359
The RNASeq-er API-a gateway to systematically updated analysis of public RNA-seq data. PMID:28369191
DNApod: DNA polymorphism annotation database from next-generation sequence read archives. PMID:28234924
Global open data management in metabolomics. PMID:28092796
The human-induced pluripotent stem cell initiative-data resources for cellular genetics. PMID:27733501
Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families. PMID:27322404
Patterns of database citation in articles and patents indicate long-term scientific and industry value of biological data resources. PMID:27092246
ATtRACT-a database of RNA-binding proteins and associated motifs. PMID:27055826
lncRNA-RNA Interactions across the Human Transcriptome. PMID:26930590
Value, but high costs in post-deposition data curation. PMID:26861660
The European Bioinformatics Institute in 2016: Data growth and integration. PMID:26673705
Proteogenomics from a bioinformatics angle: A growing field. PMID:26670565
CANTATAdb: A Collection of Plant Long Non-Coding RNAs. PMID:26657895
Biocuration of functional annotation at the European nucleotide archive. PMID:26615190
The SIB Swiss Institute of Bioinformatics' resources: focus on curated databases. PMID:26615188
GenBank. PMID:26590407
EBI metagenomics in 2016--an expanding and evolving resource for the analysis and archiving of metagenomic data. PMID:26582919
HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes. PMID:26578596
Ensembl Genomes 2016: more genomes, more complexity. PMID:26578574
DNA data bank of Japan (DDBJ) progress report. PMID:26578571
PhytoPath: an integrative resource for plant pathogen genomics. PMID:26476449
BacWGSTdb, a database for genotyping and source tracking bacterial pathogens. PMID:26433226
The EBI Search engine: providing search and retrieval functionality for biological data from EMBL-EBI. PMID:25855807
The EMBL-EBI bioinformatics web and programmatic tools framework. PMID:25845596