Alternative Splicing Gallery
Other names: alternative_splicing_gallery
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The Alternative Splicing Gallery (ASG) takes an identifier such as an EnsEMBL gene ID or a RefSeq ID as input, and provides a graph mapping splice events to transcript information. The user can also view GO information for the record, and select one or more exons and download the resulting sequence. ASG also links out to other alternative splicing databases like ProSplicer.
Description
More detailed information about this field from each metasource.
The Alternative Splicing Gallery (ASG) takes an identifier such as an EnsEMBL gene ID or a RefSeq ID as input, and provides a graph mapping splice events to transcript information. The user can also view GO information for the record, and select one or more exons and download the resulting sequence. ASG also links out to other alternative splicing databases like ProSplicer.
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:14.325135
Webpage:
http://statgen.ncsu.edu/asg/Webpage
More detailed information about this field from each metasource.
http://statgen.ncsu.edu/asg/
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:14.325135
Publications:
Publications
More detailed information about this field from each metasource.
The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome
PMID: 15292448
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:14.325135
Publications
More detailed information about this field from each metasource.
The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome
PMID: 15292448
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:14.325135
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The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome
PubMed citations: 35.
35 articles citing: The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome
Alternative RNA splicing in stem cells and cancer stem cells: Importance of transcript-based expression analysis. PMID:34786151
Differential expressions of the alternatively spliced variant mRNAs of the µ opioid receptor gene, OPRM1, in brain regions of four inbred mouse strains. PMID:25343478
TIPMaP: a web server to establish transcript isoform profiles from reliable microarray probes. PMID:24373374
Review: Alternative Splicing (AS) of Genes As An Approach for Generating Protein Complexity. PMID:24179441
Statistical and Computational Methods for High-Throughput Sequencing Data Analysis of Alternative Splicing. PMID:24058384
BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration. PMID:22847375
Identification of conserved splicing motifs in mutually exclusive exons of 15 insect species. PMID:22537296
PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text. PMID:22537006
Prolyl 4-hydroxylase genes are subjected to alternative splicing in roots of maize seedlings under waterlogging. PMID:21969257
Verifying expressed transcript variants by detecting and assembling stretches of consecutive exons. PMID:20798177
A conserved alternative splicing event in plants reveals an ancient exonization of 5S rRNA that regulates TFIIIA. PMID:20699638
Alternative splicing and gene duplication differentially shaped the regulation of isochorismate synthase in Populus and Arabidopsis. PMID:19996170
Genome-wide analysis of alternative splicing in cow: implications in bovine as a model for human diseases. PMID:19958474
Spliceosomes walk the line: splicing errors and their impact on cellular function. PMID:19829058
Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse. PMID:19594882
Width of gene expression profile drives alternative splicing. PMID:18974852
The carnitine acetyltransferase gene (CRAT): a characterization of porcine transcripts with insights into the 5'-end variants of mammalian transcripts and their possible sub-cellular localization. PMID:18839069
Stress-induced expression of a novel variant of human fumarate hydratase (FH). PMID:18257390
ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets. PMID:17485470
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. PMID:17194304
Improving gene annotation using peptide mass spectrometry. PMID:17189379
ECgene: an alternative splicing database update. PMID:17132829
Mass spectrometry-based proteomics and its application to studies of Porphyromonas gingivalis invasion and pathogenicity. PMID:16918489
ASGS: an alternative splicing graph web service. PMID:16845045
Structure function analysis of SH2D2A isoforms expressed in T cells reveals a crucial role for the proline rich region encoded by SH2D2A exon 7. PMID:16839418
An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs. PMID:16757580
Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms. PMID:16717195
AltTrans: transcript pattern variants annotated for both alternative splicing and alternative polyadenylation. PMID:16556303
ASD: a bioinformatics resource on alternative splicing. PMID:16381912
Chimeric peptide nucleic acid compounds modulate splicing of the bcl-x gene in vitro and in vivo. PMID:16299354
The architecture of pre-mRNAs affects mechanisms of splice-site pairing. PMID:16260721
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences. PMID:16207377
The importance of being divisible by three in alternative splicing. PMID:16192573
Genome-wide structural and evolutionary analysis of the P450 monooxygenase genes (P450ome) in the white rot fungus Phanerochaete chrysosporium: evidence for gene duplications and extensive gene clustering. PMID:15955240
DEDB: a database of Drosophila melanogaster exons in splicing graph form. PMID:15581431
Tags:
Tags
More detailed information about this field from each metasource.
rna splicing
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:14.325135
gene transcripts
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:14.325135
gene expression
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:14.325135
mapping
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:14.325135
protein variants
metasource: bio.tools
version: extracted_at: 2022-11-04T11:27:14.325135
Tags
More detailed information about this field from each metasource.
rna splicing
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:14.325135
gene transcripts
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:14.325135
gene expression
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:14.325135
mapping
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:14.325135
protein variants
metasource: bio.toolsversion: extracted_at: 2022-11-04T11:27:14.325135
rna splicing gene transcripts gene expression mapping protein variants
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