ASPicDB

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ASPicDB

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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Alternative splicing prediction database (ASPICdb)

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:17.911282

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aspicdb

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:17.911282

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Other names: Alternative splicing prediction database (ASPICdb), aspicdb

ASPicDB is a database designed to provide access to reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano' et al. 2006), and to the functional annotation of predicted isoforms.

Webpage:

Publications:

Publications

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ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization
PMID: 16845044

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:17.911282

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PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text
PMID: 22537006

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:17.911282

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http://nar.oxfordjournals.org/content/39/suppl_1/D80

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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• ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization PubMed citations: 15.

  15 articles citing: ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization

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  Alternative RNA splicing in stem cells and cancer stem cells: Importance of transcript-based expression analysis. PMID:34786151

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  A proteogenomic approach to understand splice isoform functions through sequence and expression-based computational modeling. PMID:26740460

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  Survey of Programs Used to Detect Alternative Splicing Isoforms from Deep Sequencing Data In Silico. PMID:26421304

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  ASPic-GeneID: a lightweight pipeline for gene prediction and alternative isoforms detection. PMID:24308000

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  Transfecting RNA quadruplexes results in few transcriptome perturbations. PMID:23235467

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  Function of alternative splicing. PMID:22909801

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  PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text. PMID:22537006

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  ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing. PMID:21051348

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  Assessment of orthologous splicing isoforms in human and mouse orthologous genes. PMID:20920313

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  Identification of tumor-associated cassette exons in human cancer through EST-based computational prediction and experimental validation. PMID:20813049

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  Discovery of novel human transcript variants by analysis of intronic single-block EST with polyadenylation site. PMID:19906316

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  Increased transcript diversity: novel splicing variants of Machado-Joseph disease gene (ATXN3). PMID:19714377

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  Identification and functional characterization of two new transcriptional variants of the human p63 gene. PMID:19700772

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  EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data. PMID:19534735

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  ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets. PMID:17485470
• PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text PubMed citations: 4.

  4 articles citing: PIntron: a fast method for detecting the gene structure due to alternative splicing via maximal pairings of a pattern and a text

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  Global Investigation of Cytochrome P450 Genes in the Chicken Genome. PMID:31416226

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  RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web application. PMID:26046471

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  Modeling alternative splicing variants from RNA-Seq data with isoform graphs. PMID:24200390

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  RCDA: a highly sensitive and specific alternatively spliced transcript assembly tool featuring upstream consecutive exon structures. PMID:22971325
• http://nar.oxfordjournals.org/content/39/suppl_1/D80

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Tags

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nucleotide sequence databases

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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gene structure, introns and exons, splice sites

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

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gene structure

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:17.911282

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gene transcripts

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:17.911282

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rna splicing

metasource: bio.tools
version: extracted_at: 2022-11-04T11:32:17.911282

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nucleic acid sequence gene structure, introns and exons, splice sites gene structure gene transcripts rna splicing