Tag: genome annotation terms, ontologies and nomenclature


Found 23 sources
Source Match ReputationScore*

Gene Ontology


The Gene Ontology resource provides a computational representation of our current scientific knowledge about the functions of genes (or, more properly, the protein and non-coding RNA molecules produced by genes) from many different organisms, from hu ...
100%

Human Phenotype Ontology


The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as Atrial septal defect. The HPO is currently being develope ...
65%

Disease Ontology


The Disease Ontology has been developed as a standardized ontology for human disease with the purpose of providing descriptions of human disease terms, phenotype characteristics and related medical vocabulary disease concepts. Releases: https://githu ...
51%

PRotein Ontology


Protein Ontology (PRO) provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. Each PRO term represents a distinct class of entities (including specific modified forms ...
43%

Gene Ontology Annotation Database


The GO Annotation Database (GOA) provides Gene Ontology (GO) annotations to proteins in the UniProt Knowledgebase (UniProtKB), RNA molecules from RNACentral and protein complexes from the Complex Portal. GOA files contain a mixture of manual annotati ...
41%

BRENDA tissue / enzyme source


A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.
40%

Plant Ontology


The Plant Ontology is a structured vocabulary and database resource that links plant anatomy, morphology and growth and development to plant genomics data. The PO is under active development to expand to encompass terms and annotations from all plant ...
36%

SOURCE


The explosion in the number of functional genomic datasets generated with tools such as DNA microarrays has created a critical need for resources that facilitate the interpretation of large-scale biological data. SOURCE is a web-based database that b ...
31%

TreeBase


TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) re ...
28%

Ontobee


A linked data server designed for ontologies. Ontobee is aimed to facilitate ontology data sharing, visualization, query, integration, and analysis. Ontobee dynamically dereferences and presents individual ontology term URIs to (i) HTML web pages for ...
27%

MetaBase


Wiki database of biological databases
26%

FunSimMat


Gene Ontology-based functional similarity values for proteins and protein families
26%

Domain-centric GO


Domain-centric GO provides associations between ontological terms and protein domains at the superfamily and family levels. Some functional units consist of more than one domain acting together or acting at an interface between domains; therefore, on ...
24%

Protein Naming Utility


Repository of protein names and naming rules
24%

BioGPS


Gene annotation portal and a resource on gene and protein function
21%

NeXO


Network Extracted gene Ontology database
20%

GONUTS


Gene Ontology Normal Usage Tracking System
20%

IGRhCellID


Human Cell Lines Identification Resources
20%

DGA


Disease and Gene Annotations database
20%

MIRIAM Registry


The MIRIAM Registry provides a set of services for the generation of unique and perennial identifiers, in the form of URIs. The core of the Registry is a catalogue of data collections (corresponding to controlled vocabularies, databases, etc.)
20%

IUPAC Nomenclature database


The IUPAC Nomenclature database is mainly concerned with biochemical and organic chemical nomenclature. It includes most nomenclature recommendations prepared by the IUPAC-IUBMB Joint Commission on Biochemical Nomenclature and the IUPAC Commission on ...
20%

IUBMB Nomenclature database


The IUBMB Nomenclature database is composed of Enzyme Nomenclature, with a classified list of characterised enzymes, and the full text of all nomenclature recommendations prepared by the Nomenclature Committee of IUBMB. For additional recommendations ...
20%

BioThesaurus


BioThesaurus is a web-based system that maps a comprehensive collection of protein and gene names to protein entries in the UniProt Knowledgebase (UniProtKB). Currently covering more than two million protein sequences, BioThesaurus consists of over 2 ...
20%

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