Design and application of a knowledge network for automatic prioritization of drug mechanisms.
PMID:35561182
A genome-scale metabolic model of Saccharomyces cerevisiae that integrates expression constraints and reaction thermodynamics.
PMID:34373465
Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis.
PMID:34271980
Proteo3Dnet: a web server for the integration of structural information with interactomics data.
PMID:33963857
Analysing the yeast complexome-the Complex Portal rising to the challenge.
PMID:33677561
Towards a unified open access dataset of molecular interactions.
PMID:33262342
Systematic analysis of bypass suppression of essential genes.
PMID:32939983
Gene Ontology Curation of Neuroinflammation Biology Improves the Interpretation of Alzheimer's Disease Gene Expression Data.
PMID:32417785
Proteomic and interactomic insights into the molecular basis of cell functional diversity.
PMID:32235894
Systematic bromodomain protein screens identify homologous recombination and R-loop suppression pathways involved in genome integrity.
PMID:31753913
PDBe: improved findability of macromolecular structure data in the PDB.
PMID:31691821
Enzyme annotation in UniProtKB using Rhea.
PMID:31688925
SIGNOR 2.0, the SIGnaling Network Open Resource 2.0: 2019 update.
PMID:31665520
Ancestral reconstruction of protein interaction networks.
PMID:31658251
PDBe-KB: a community-driven resource for structural and functional annotations.
PMID:31584092
A Survey of Gene Prioritization Tools for Mendelian and Complex Human Diseases.
PMID:31494632
The role of structural pleiotropy and regulatory evolution in the retention of heteromers of paralogs.
PMID:31454312
ComplexBrowser: A Tool for Identification and Quantification of Protein Complexes in Large-scale Proteomics Datasets.
PMID:31447428
Proteomics INTegrator (PINT): An Online Tool To Store, Query, and Visualize Large Proteomics Experiment Results.
PMID:31260318
Re-curation and rational enrichment of knowledge graphs in Biological Expression Language.
PMID:31225582
Integration of macromolecular complex data into the Saccharomyces Genome Database.
PMID:30715277
Production of Protein-Complex Components Is Stoichiometric and Lacks General Feedback Regulation in Eukaryotes.
PMID:30553725
Automatic gene annotation using GO terms from cellular component domain.
PMID:30526566
Improving the Gene Ontology Resource to Facilitate More Informative Analysis and Interpretation of Alzheimer's Disease Data.
PMID:30501127
ECO, the Evidence & Conclusion Ontology: community standard for evidence information.
PMID:30407590
UniProt: a worldwide hub of protein knowledge.
PMID:30395287
Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes.
PMID:30364992
Complex Portal 2018: extended content and enhanced visualization tools for macromolecular complexes.
PMID:30357405
Approaches to target tractability assessment - a practical perspective.
PMID:30108951
JAMI: a Java library for molecular interactions and data interoperability.
PMID:29642846
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.
PMID:29642841
SPV: a JavaScript Signaling Pathway Visualizer.
PMID:29590303
Worldwide Protein Data Bank validation information: usage and trends.
PMID:29533231
Expression Atlas: gene and protein expression across multiple studies and organisms.
PMID:29165655
A rapid and accurate approach for prediction of interactomes from co-elution data (PrInCE).
PMID:29061110
ComplexViewer: visualization of curated macromolecular complexes.
PMID:29036573
Tutorial on Protein Ontology Resources.
PMID:28150233
Glycosaminoglycanomics: where we are.
PMID:27900575
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
PMID:27899649
Expansion of the Gene Ontology knowledgebase and resources.
PMID:27899567
EpiFactors: a comprehensive database of human epigenetic factors and complexes.
PMID:26153137
Biocuration at the Saccharomyces genome database.
PMID:25997651
Shared resources, shared costs--leveraging biocuration resources.
PMID:25776020