Capturing the geometry, function, and evolution of enzymes with 3D templates.
PMID:35762726
The chromosome-level genome for Toxicodendron vernicifluum provides crucial insights into Anacardiaceae evolution and urushiol biosynthesis.
PMID:35733792
Species Persistence with Hybridization in Toad-Headed Lizards Driven by Divergent Selection and Low Recombination.
PMID:35356979
Chromosome-level genome assembly of the shuttles hoppfish, Periophthalmus modestus.
PMID:35022698
De Novo Genome Assembly of Chinese Plateau Honeybee Unravels Intraspecies Genetic Diversity in the Eastern Honeybee, Apis cerana.
PMID:34680661
RefPlantNLR is a comprehensive collection of experimentally validated plant disease resistance proteins from the NLR family.
PMID:34669691
Whole-Genome Sequencing and Genome-Wide Studies of Spiny Head Croaker (Collichthys lucidus) Reveals Potential Insights for Well-Developed Otoliths in the Family Sciaenidae.
PMID:34659355
Draft Genome of the Mirrorwing Flyingfish (Hirundichthys speculiger).
PMID:34306036
The Draft Genome Sequence of a New Land-Hopper Platorchestia hallaensis.
PMID:33505439
First draft genome for the sand-hopper Trinorchestia longiramus.
PMID:32152293
Genome and population sequencing of a chromosome-level genome assembly of the Chinese tapertail anchovy (Coilia nasus) provides novel insights into migratory adaptation.
PMID:31895412
De novo genome assembly of the endangered Acer yangbiense, a plant species with extremely small populations endemic to Yunnan Province, China.
PMID:31307060
Draft genomic and transcriptome resources for marine chelicerate Tachypleus tridentatus.
PMID:30806641
Comparative genomics sheds light on the predatory lifestyle of accipitrids and owls.
PMID:30783131
Elucidation of the anti-hyperammonemic mechanism of Lactobacillus amylovorus JBD401 by comparative genomic analysis.
PMID:29695242
The genome draft of coconut (Cocos nucifera).
PMID:29048487
The draft genome assembly of Rhododendron delavayi Franch. var. delavayi.
PMID:29020749
High-quality genome assembly of channel catfish, Ictalurus punctatus.
PMID:27549802
BioDB extractor: customized data extraction system for commonly used bioinformatics databases.
PMID:26516349
Transcriptome sequencing and annotation of the polychaete Hermodice carunculata (Annelida, Amphinomidae).
PMID:26059236
The PRINTS database: a fine-grained protein sequence annotation and analysis resource--its status in 2012.
PMID:22508994
MotViz: a tool for sequence motif prediction in parallel to structural visualization and analyses.
PMID:22449399
Major prospects for exploring canine vector borne diseases and novel intervention methods using 'omic technologies.
PMID:21489242
Gene ontology based transfer learning for protein subcellular localization.
PMID:21284890
In silico gene expression analysis in Codonopsis lanceolata root.
PMID:21088900
Modular composition predicts kinase/substrate interactions.
PMID:20579376
SoyDB: a knowledge database of soybean transcription factors.
PMID:20082720
Generation and gene ontology based analysis of expressed sequence tags (EST) from a Panax ginseng C. A. Meyer roots.
PMID:19943115
Databases and QSAR for cancer research.
PMID:19458762
A computational strategy for protein function assignment which addresses the multidomain problem.
PMID:18629055
De-orphaning the structural proteome through reciprocal comparison of evolutionarily important structural features.
PMID:18461181
Evolution of exceptionally large genes in prokaryotes.
PMID:18322635
Mannitol is required for asexual sporulation in the wheat pathogen Stagonospora nodorum (glume blotch).
PMID:16859492
Sequence analysis and organization of the Neodiprion abietis nucleopolyhedrovirus genome.
PMID:16809301
Comparative genomics of the HOG-signalling system in fungi.
PMID:16468042
Comparative analysis of HOG pathway proteins to generate hypotheses for functional analysis.
PMID:16468041
The TetR family of transcriptional repressors.
PMID:15944459
A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models.
PMID:15847681
EFICAz: a comprehensive approach for accurate genome-scale enzyme function inference.
PMID:15576349
Differential gene expression between squamous cell carcinoma of esophageus and its normal epithelium; altered pattern of mal, akr1c2, and rab11a expression.
PMID:15188492
Exploring the nonlinear geometry of protein homology.
PMID:12876310
The cadherin superfamily database.
PMID:12836704
Domain fusion analysis by applying relational algebra to protein sequence and domain databases.
PMID:12734020
Bioinformatics methods to predict protein structure and function. A practical approach.
PMID:12632698
PRINTS and its automatic supplement, prePRINTS.
PMID:12520033
ProtoNet: hierarchical classification of the protein space.
PMID:12520020
A comprehensive analysis of 40 blind protein structure predictions.
PMID:12150712
Structural similarity to link sequence space: new potential superfamilies and implications for structural genomics.
PMID:11967367
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model approach.
PMID:11818024
Tools and resources for identifying protein families, domains and motifs.
PMID:11806833
PRINTS and PRINTS-S shed light on protein ancestry.
PMID:11752304
Prediction of protein functional domains from sequences using artificial neural networks.
PMID:11483582
Application of InterPro for the functional classification of the proteins of fish origin in SWISS-PROT and TrEMBL.
PMID:11426064
The University of Minnesota Biocatalysis/Biodegradation Database: emphasizing enzymes.
PMID:11125131
The EMOTIF database.
PMID:11125091
HUNT: launch of a full-length cDNA database from the Helix Research Institute.
PMID:11125086
The SBASE protein domain library, release 8.0: a collection of annotated protein sequence segments.
PMID:11125049
iProClass: an integrated, comprehensive and annotated protein classification database.
PMID:11125047
The MetaFam Server: a comprehensive protein family resource.
PMID:11125046
Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.
PMID:11125045
The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
PMID:11125043
CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins.
PMID:11125042
Website review: interPro (the integrated resource of protein domains and functional sites).
PMID:11119311
An overview of the structures of protein-DNA complexes.
PMID:11104519