BAliBASE
Names
More detailed information about this field from each metasource.
BAliBASE
metasource: Fairsharing.org
version: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
Benchmark Alignment dataBASE
metasource: re3data.org
version: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
Names
More detailed information about this field from each metasource.
BAliBASE
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
Benchmark Alignment dataBASE
metasource: re3data.orgversion: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
Other names: Benchmark Alignment dataBASE
Names
More detailed information about this field from each metasource.
BAliBASE
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
metasource: re3data.org
version: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
Benchmark Alignment dataBASE
metasource: re3data.orgversion: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
BAliBASE; a benchmark alignment database, including enhancements for repeats, transmembrane sequences and circular permutations.
Description
More detailed information about this field from each metasource.
BAliBASE; a benchmark alignment database, including enhancements for repeats, transmembrane sequences and circular permutations.
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Benchmark database for comparison of multiple sequence alignments
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
A collection of high quality multiple sequence alignments for objective, comparative studies of alignment algorithms. The alignments are constructed based on 3D structure superposition and manually refined to ensure alignment of important functional residues. A number of subsets are defined covering many of the most important problems encountered when aligning real sets of proteins. It is specifically designed to serve as an evaluation resource to address all the problems encountered when aligning complete sequences. The first release provided sets of reference alignments dealing with the problems of high variability, unequal repartition and large N/C-terminal extensions and internal insertions. Version 2.0 of the database incorporates three new reference sets of alignments containing structural repeats, trans-membrane sequences and circular permutations to evaluate the accuracy of detection/prediction and alignment of these complex sequences. Within the resource, users can look at a list of all the alignments, download the whole database by ftp, get the "c" program to compare a test alignment with the BAliBASE reference (The source code for the program is freely available), or look at the results of a comparison study of several multiple alignment programs, using BAliBASE reference sets.
metasource: re3data.orgversion: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
Webpage:
http://www.lbgi.fr/balibase/Webpage
More detailed information about this field from each metasource.
http://www.lbgi.fr/balibase/
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
http://lbgi.fr/balibase/
metasource: re3data.orgversion: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
Licence:
Name: NIH Web Policies and NoticesLicence name
More detailed information about this field from each metasource.
NIH Web Policies and Notices
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
other
metasource: re3data.orgversion: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
Licence URL
More detailed information about this field from each metasource.
https://www.nih.gov/web-policies-notices
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
https://www.ncbi.nlm.nih.gov/pubmed/16044462
metasource: re3data.orgversion: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
Publications:
Publications
More detailed information about this field from each metasource.
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark
PMID: 16044462
metasource: Fairsharing.org
version: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations
PMID: 11125126
metasource: Fairsharing.org
version: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
Publications
More detailed information about this field from each metasource.
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark
PMID: 16044462
metasource: Fairsharing.org
version: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations
PMID: 11125126
metasource: Fairsharing.org
version: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
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BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark
PubMed citations: 127.
127 articles citing: BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark
Developments in Algorithms for Sequence Alignment: A Review. PMID:35454135
Application of the MAHDS Method for Multiple Alignment of Highly Diverged Amino Acid Sequences. PMID:35409125
TwinCons: Conservation score for uncovering deep sequence similarity and divergence. PMID:34714829
Harnessing machine learning to guide phylogenetic-tree search algorithms. PMID:33790270
An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction. PMID:33203364
Substitution scoring matrices for proteins - An overview. PMID:32954566
The ranging of amino acids substitution matrices of various types in accordance with the alignment accuracy criterion. PMID:32921315
LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation. PMID:31888452
Efficient merging of genome profile alignments. PMID:31510683
Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit. PMID:31368486
Identifying Clusters of High Confidence Homologies in Multiple Sequence Alignments. PMID:31209473
SPARK-MSNA: Efficient algorithm on Apache Spark for aligning multiple similar DNA/RNA sequences with supervised learning. PMID:31036850
SAliBASE: A Database of Simulated Protein Alignments. PMID:30733625
PVTree: A Sequential Pattern Mining Method for Alignment Independent Phylogeny Reconstruction. PMID:30678245
A benchmark study of sequence alignment methods for protein clustering. PMID:30598070
Motif-Aware PRALINE: Improving the alignment of motif regions. PMID:30383764
Disease Sequences High-Accuracy Alignment Based on the Precision Medicine. PMID:29682519
A sequence family database built on ECOD structural domains. PMID:29659718
Identifying functionally informative evolutionary sequence profiles. PMID:29211823
HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing. PMID:29026435
TM-Aligner: Multiple sequence alignment tool for transmembrane proteins with reduced time and improved accuracy. PMID:28970546
Clustal Omega for making accurate alignments of many protein sequences. PMID:28884485
Bacterial Foraging Optimization -Genetic Algorithm for Multiple Sequence Alignment with Multi-Objectives. PMID:28821841
A greedy alignment-free distance estimator for phylogenetic inference. PMID:28617225
PFASUM: a substitution matrix from Pfam structural alignments. PMID:28583067
Historian: accurate reconstruction of ancestral sequences and evolutionary rates. PMID:28104629
AlignStat: a web-tool and R package for statistical comparison of alternative multiple sequence alignments. PMID:27784265
Heuristics for multiobjective multiple sequence alignment. PMID:27454115
LEON-BIS: multiple alignment evaluation of sequence neighbours using a Bayesian inference system. PMID:27387560
Determination of optimal parameters of MAFFT program based on BAliBASE3.0 database. PMID:27376004
Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties. PMID:27192614
Characterization of multiple sequence alignment errors using complete-likelihood score and position-shift map. PMID:26992851
The BRaliBase dent-a tale of benchmark design and interpretation. PMID:26984616
BAYESIAN PROTEIN STRUCTURE ALIGNMENT. PMID:26925188
MSAIndelFR: a scheme for multiple protein sequence alignment using information on indel flanking regions. PMID:26597571
KMAD: knowledge-based multiple sequence alignment for intrinsically disordered proteins. PMID:26568635
DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment. PMID:26445311
Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix. PMID:26269100
A call for benchmarking transposable element annotation methods. PMID:26244060
Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference. PMID:26031838
Quantifying the displacement of mismatches in multiple sequence alignment benchmarks. PMID:25993129
Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs. PMID:25888064
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters. PMID:25883146
MDAT- Aligning multiple domain arrangements. PMID:25626688
Evaluating the accuracy and efficiency of multiple sequence alignment methods. PMID:25574120
Systematic exploration of guide-tree topology effects for small protein alignments. PMID:25282640
ReformAlign: improved multiple sequence alignments using a profile-based meta-alignment approach. PMID:25099134
Enhancing HMM-based protein profile-profile alignment with structural features and evolutionary coupling information. PMID:25062980
Not assessing the efficiency of multiple sequence alignment programs. PMID:25053971
Simple chained guide trees give high-quality protein multiple sequence alignments. PMID:25002495
Kmacs: the k-mismatch average common substring approach to alignment-free sequence comparison. PMID:24828656
MSARC: Multiple sequence alignment by residue clustering. PMID:24735785
Fast alignment-free sequence comparison using spaced-word frequencies. PMID:24700317
Assessing the efficiency of multiple sequence alignment programs. PMID:24602402
QuickProbs--a fast multiple sequence alignment algorithm designed for graphics processors. PMID:24586435
Sequence alignment by passing messages. PMID:24564436
DIALIGN at GOBICS--multiple sequence alignment using various sources of external information. PMID:23620293
Predicting the accuracy of multiple sequence alignment algorithms by using computational intelligent techniques. PMID:23066102
Protein sequence alignment analysis by local covariation: coevolution statistics detect benchmark alignment errors. PMID:22715369
Fast and robust multiple sequence alignment with phylogeny-aware gap placement. PMID:22694311
SeqFIRE: a web application for automated extraction of indel regions and conserved blocks from protein multiple sequence alignments. PMID:22693213
The MULTICOM toolbox for protein structure prediction. PMID:22545707
MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts. PMID:22168237
Improving the alignment quality of consistency based aligners with an evaluation function using synonymous protein words. PMID:22163274
Accelerated large-scale multiple sequence alignment. PMID:22151470
STRIKE: evaluation of protein MSAs using a single 3D structure. PMID:22039207
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. PMID:21988835
Using the T-Coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures. PMID:21979275
AlignHUSH: alignment of HMMs using structure and hydrophobicity information. PMID:21729312
SuiteMSA: visual tools for multiple sequence alignment comparison and molecular sequence simulation. PMID:21600033
Tasting soil fungal diversity with earth tongues: phylogenetic test of SATé alignments for environmental ITS data. PMID:21533038
PicXAA-Web: a web-based platform for non-progressive maximum expected accuracy alignment of multiple biological sequences. PMID:21515632
KalignP: improved multiple sequence alignments using position specific gap penalties in Kalign2. PMID:21505030
A comprehensive benchmark study of multiple sequence alignment methods: current challenges and future perspectives. PMID:21483869
A genome alignment algorithm based on compression. PMID:21159205
Improving protein secondary structure prediction based on short subsequences with local structure similarity. PMID:21143813
Benchmark datasets and software for developing and testing methods for large-scale multiple sequence alignment and phylogenetic inference. PMID:21113335
Regional context in the alignment of biological sequence pairs. PMID:21107551
Reticular alignment: a progressive corner-cutting method for multiple sequence alignment. PMID:21092255
Protein multiple sequence alignment by hybrid bio-inspired algorithms. PMID:21071394
Automatic detection of anchor points for multiple sequence alignment. PMID:20813050
A comparative study of conservation and variation scores. PMID:20663120
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment. PMID:20639539
Cloud-Coffee: implementation of a parallel consistency-based multiple alignment algorithm in the T-Coffee package and its benchmarking on the Amazon Elastic-Cloud. PMID:20605929
Identifying and seeing beyond multiple sequence alignment errors using intra-molecular protein covariation. PMID:20596526
AlexSys: a knowledge-based expert system for multiple sequence alignment construction and analysis. PMID:20530533
GUIDANCE: a web server for assessing alignment confidence scores. PMID:20497997
DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS. PMID:20497995
Sequence embedding for fast construction of guide trees for multiple sequence alignment. PMID:20470396
MTRAP: pairwise sequence alignment algorithm by a new measure based on transition probability between two consecutive pairs of residues. PMID:20459682
Parallelization of the MAFFT multiple sequence alignment program. PMID:20427515
PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences. PMID:20413579
Phylogenetic assessment of alignments reveals neglected tree signal in gaps. PMID:20370897
An alignment confidence score capturing robustness to guide tree uncertainty. PMID:20207713
Towards realistic benchmarks for multiple alignments of non-coding sequences. PMID:20102627
Quality measures for protein alignment benchmarks. PMID:20047958
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations. PMID:19900971
Reproducing the manual annotation of multiple sequence alignments using a SVM classifier. PMID:19770262
Biological sequence simulation for testing complex evolutionary hypotheses: indel-Seq-Gen version 2.0. PMID:19651852
Upcoming challenges for multiple sequence alignment methods in the high-throughput era. PMID:19648142
Fast statistical alignment. PMID:19478997
Strategies for reliable exploitation of evolutionary concepts in high throughput biology. PMID:19204813
Kalign2: high-performance multiple alignment of protein and nucleotide sequences allowing external features. PMID:19103665
Improving accuracy of multiple sequence alignment algorithms based on alignment of neighboring residues. PMID:19056820
Knowledge-based expert systems and a proof-of-concept case study for multiple sequence alignment construction and analysis. PMID:18971242
LC-MSsim--a simulation software for liquid chromatography mass spectrometry data. PMID:18842122
A new protein linear motif benchmark for multiple sequence alignment software. PMID:18439277
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities. PMID:18226231
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. PMID:17947321
Automatic extraction of reliable regions from multiple sequence alignments. PMID:17570868
The M-Coffee web server: a meta-method for computing multiple sequence alignments by combining alternative alignment methods. PMID:17526519
eProbalign: generation and manipulation of multiple sequence alignments using partition function posterior probabilities. PMID:17485479
Blast sampling for structural and functional analyses. PMID:17319945
A Protein Classification Benchmark collection for machine learning. PMID:17142240
Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost. PMID:17137519
State of the art: refinement of multiple sequence alignments. PMID:17105653
The accuracy of several multiple sequence alignment programs for proteins. PMID:17062146
An enhanced RNA alignment benchmark for sequence alignment programs. PMID:17062125
MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information. PMID:16936316
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). PMID:16901231
Kalign, Kalignvu and Mumsa: web servers for multiple sequence alignment. PMID:16845078
MACSIMS: multiple alignment of complete sequences information management system. PMID:16792820
Multiple sequence alignment with user-defined anchor points. PMID:16722533
On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins. PMID:16648166
M-Coffee: combining multiple sequence alignment methods with T-Coffee. PMID:16556910
Automatic assessment of alignment quality. PMID:16361270
MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences. PMID:16043635 -
BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations
PubMed citations: 43.
43 articles citing: BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations
AlignMe: an update of the web server for alignment of membrane protein sequences. PMID:35609986
Accuracy of multiple sequence alignment methods in the reconstruction of transposable element families. PMID:35591887
Application of the MAHDS Method for Multiple Alignment of Highly Diverged Amino Acid Sequences. PMID:35409125
CIAlign: A highly customisable command line tool to clean, interpret and visualise multiple sequence alignments. PMID:35310163
Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors. PMID:33930031
Accelerating phylogeny-aware alignment with indel evolution using short time Fourier transform. PMID:33575636
Caretta - A multiple protein structure alignment and feature extraction suite. PMID:32368333
MAFFT-DASH: integrated protein sequence and structural alignment. PMID:31062021
A benchmark study of sequence alignment methods for protein clustering. PMID:30598070
Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets. PMID:30329135
Adaptive Local Realignment of Protein Sequences. PMID:29889553
Disease Sequences High-Accuracy Alignment Based on the Precision Medicine. PMID:29682519
Alignment Modulates Ancestral Sequence Reconstruction Accuracy. PMID:29618097
TM-Aligner: Multiple sequence alignment tool for transmembrane proteins with reduced time and improved accuracy. PMID:28970546
IBBOMSA: An Improved Biogeography-based Approach for Multiple Sequence Alignment. PMID:27812276
AlignMe--a membrane protein sequence alignment web server. PMID:24753425
Assessing the efficiency of multiple sequence alignment programs. PMID:24602402
Accuracy estimation and parameter advising for protein multiple sequence alignment. PMID:23489379
Alignment of helical membrane protein sequences using AlignMe. PMID:23469223
Accurate multiple sequence alignment of transmembrane proteins with PSI-Coffee. PMID:22536955
Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment. PMID:21867510
Protein multiple sequence alignment by hybrid bio-inspired algorithms. PMID:21071394
More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology. PMID:20686689
Issues in bioinformatics benchmarking: the case study of multiple sequence alignment. PMID:20639539
Quality measures for protein alignment benchmarks. PMID:20047958
Lightweight comparison of RNAs based on exact sequence-structure matches. PMID:19189979
Enredo and Pecan: genome-wide mammalian consistency-based multiple alignment with paralogs. PMID:18849524
Discovering sequence motifs with arbitrary insertions and deletions. PMID:18437229
Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost. PMID:17137519
A statistical score for assessing the quality of multiple sequence alignments. PMID:17081313
Multiple alignment of protein sequences with repeats and rearrangements. PMID:17068081
An enhanced RNA alignment benchmark for sequence alignment programs. PMID:17062125
MUMMALS: multiple sequence alignment improved by using hidden Markov models with local structural information. PMID:16936316
Formation of the Arabidopsis pentatricopeptide repeat family. PMID:16825340
Simple sequence proteins in prokaryotic proteomes. PMID:16762057
Kalign--an accurate and fast multiple sequence alignment algorithm. PMID:16343337
A benchmark of multiple sequence alignment programs upon structural RNAs. PMID:15860779
Homology-extended sequence alignment. PMID:15699183
Gapped alignment of protein sequence motifs through Monte Carlo optimization of a hidden Markov model. PMID:15504234
A comprehensive comparison of comparative RNA structure prediction approaches. PMID:15458580
MUSCLE: a multiple sequence alignment method with reduced time and space complexity. PMID:15318951
Estimates of statistical significance for comparison of individual positions in multiple sequence alignments. PMID:15296518
MUSCLE: multiple sequence alignment with high accuracy and high throughput. PMID:15034147
Tags:
Tags
More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.org
version: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein structure
metasource: Fairsharing.org
version: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
sequence alignment
metasource: Fairsharing.org
version: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
polypeptide_region
metasource: Fairsharing.org
version: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
region
metasource: Fairsharing.org
version: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
protein domain databases; protein classification
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657
multiple alignments
metasource: re3data.org
version: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
structural genomics
metasource: re3data.org
version: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
Tags
More detailed information about this field from each metasource.
deoxyribonucleic acid
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein structure
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
sequence alignment
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
polypeptide_region
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
region
metasource: Fairsharing.orgversion: FAIRsharing.org: BAliBASE; BAliBASE; DOI: https://doi.org/10.25504/FAIRsharing.sed5tq; Last edited: Jan. 8, 2019, 1:17 p.m.; Last accessed: Jan 03 2022 7:09 p.m.
protein sequence databases
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
protein domain databases; protein classification
metasource: Nucleic Acid Research database catalogueversion: extracted_at: 2022-11-04T11:16:25.468657
multiple alignments
metasource: re3data.orgversion: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
structural genomics
metasource: re3data.orgversion: re3data.org: BAliBASE; editing status 2021-10-25; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R31NJMHE last accessed: 2022-11-04
dna protein structure sequence alignment polypeptide region region protein sequence protein domains and classification multiple alignments structural genomics
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