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Uniclust

Clustered protein sequences and multiple sequence alignments

Description

More detailed information about this field from each metasource.

Clustered protein sequences and multiple sequence alignments

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Webpage:

http://uniclust.mmseqs.com/

Webpage

More detailed information about this field from each metasource.

http://uniclust.mmseqs.com/

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1093/nar/1928
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

http://dx.doi.org/10.1093/nar/1928

Tags:

Tags
More detailed information about this field from each metasource.

protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

general sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein sequence general sequence

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PRF

Protein research foundation database of peptides: sequences, literature and unnatural amino acids

PA-GOSUB

Protein sequences from model organisms, GO assignment and subcellular localization

PANDIT

PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains. It contains the seed protein sequence alignments from the Pfam-A (curated families) ...

ColabFold

ColabFold databases are MMseqs2 expandable profile databases to generate diverse multiple sequence alignments to predict protein structures.

The Protein Database

The Entrez Protein search and retrieval system contains protein entries that have been compiled from a variety of sources, including SwissProt, PIR, PRF, PDB, and translations from annotated coding re ...

NRichD

Efficiency of protein remote homology detection methods depends on the dispersion of the protein sequence space and the availability of intermediate sequences between two related protein families. In ...

BAliBASE

BAliBASE; a benchmark alignment database, including enhancements for repeats, transmembrane sequences and circular permutations.

Protein Clusters

Related protein sequences (clusters)of Reference Sequence proteins encoded by complete genomes

COMBREX

Computational Bridge to Experiments

UniParc

The UniProt archive (UniParc), part of the UniProt databases, is an archival protein sequence collection from all major publicly accessible resources. New and revised protein sequences are added daily ...

PIR - Protein Information Resource

The Protein Information Resource (PIR) is an integrated public bioinformatics resource that supports genomic and proteomic research and scientific studies. PIR has provided many protein databases and ...

CharProtDB

Experimentally Characterized Protein annotations

MulPSSM

Representation of multiple sequence alignments of protein families in terms of Position Specific Scoring Matrices (PSSMs) is commonly used in the detection of remote homologues. A PSSM is generated wi ...

UniRef

The UniProt Reference Clusters are three separate datasets that compress sequence space at different resolutions, achieved by merging sequences and sub-sequences that are 100% (UniRef100), >=90% (UniR ...

TransportDB

Sequences and classification of predicted membrane transporters encoded in complete genomes

PHYTOPROT

Clusters of predicted plant proteins

InterEvol database : Diving into the structure and evolution of protein complex interfaces

Evolution of protein-protein Interfaces InterEvol is a resource for researchers to investigate the structural interaction of protein molecules and sequences using a variety of tools and resources.

PALI

The database of Phylogeny and ALIgnment of homologous protein structures (PALI) contains structure-based sequence alignments and dendrograms based on information primarily derived from the structural ...

PlantTribes

Families of protein-coding genes from five sequenced plant species

Pfam

The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Pfam also generates higher-level groupings of related ent ...

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