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iPfam

A database of Pfam domain interactions

Description

More detailed information about this field from each metasource.

A database of Pfam domain interactions

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Webpage:

http://ipfam.org/

Webpage

More detailed information about this field from each metasource.

http://ipfam.org/

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Publications:

Publications
More detailed information about this field from each metasource.

http://dx.doi.org/10.1093/nar/gkt1210
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

http://dx.doi.org/10.1093/nar/gkt1210

Tags:

Tags
More detailed information about this field from each metasource.

protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein domain databases; protein classification
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein sequence protein domains and classification

More to explore:

1/20

InterDom

Putative protein domain interactions

LenVarDB

Database of length variantion in protein domains

Protein Clusters

Related protein sequences (clusters)of Reference Sequence proteins encoded by complete genomes

OPTIC

Orthologous and Paralogous Transcripts in Clades

Pfam

The Pfam database is a large collection of protein families, each represented by multiple sequence alignments and hidden Markov models (HMMs). Pfam also generates higher-level groupings of related ent ...

FunShift

Functional divergence between the subfamilies of a protein domain family

ADDA - A Domain Database

ADDA is a global clustering of protein sequences into protein domains and protein domain families. The database currently contains domains for 1.5 Mio sequences from UniProt, ENSEMBL, and other sequen ...

DomIns - Database of Domain Insertions

Proteins can be formed by single or multiple domains. The process of recombination at the molecular level has generated a wide variety of multi-domain proteins with specific domain organization to cat ...

PALI

The database of Phylogeny and ALIgnment of homologous protein structures (PALI) contains structure-based sequence alignments and dendrograms based on information primarily derived from the structural ...

ProtoNet

This resource is a hierarchical clustering of UniProt protein sequences into hierarchical trees. This resource allows for the study of sub-family and super-family of a protein, using UniRef50 clusters ...

iProClass

The iProClass database provides value-added information reports for UniProtKB and unique NCBI Entrez protein sequences in UniParc, with links to over 175 biological databases, including databases for ...

3DSwap: Database of Proteins involved in 3D domain Swapping

Protein oligomerization is a key biochemical step to perform the designated function of proteins. 3D domain swapping is a unique protein oligomerization phenomenon observed in a wide array of proteins ...

RNA Binding Protein Variant Database

RBP-Var is a database of functional variants involved in regulation mediated by RNA-binding proteins. Human genome variants can change the RNA structure and affect RNA-protein interactions.

SBASE

SBASE (http://www.icgeb.trieste.it/sbase) is an on-line collection of protein domain sequences and related computational tools designed to facilitate detection of domain homologies based on simple dat ...

DIMA

Domain interaction map: experimental and predicted protein domain interactions

SUPFAM

During the course of evolution, protein sequences derived from a common ancestor diverge by mutations, insertions and deletions, gene duplication and recombination and give rise to diverse families wi ...

Protein Classification Benchmark Collection

The Protein Classification Benchmark Collection was created in order to create standard datasets on which the performance of machine learning methods can be compared.

PIR SuperFamily

The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-overlapping clustering of UniProtKB sequences into a hierarchical order to reflect their evolutionary ...

ProDom

ProDom is a comprehensive set of protein domain families automatically generated from the UniProt Knowledge Database.

Hits

High throughput genome (HTG) and expressed sequence tag (EST) sequences are currently the most abundant nucleotide sequence classes in the public database. The large volume, high degree of fragmentati ...

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