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PALI

The database of Phylogeny and ALIgnment of homologous protein structures (PALI) contains structure-based sequence alignments and dendrograms based on information primarily derived from the structural alignments at domain level [1,2]. Protein domain decomposition as proposed by SCOP (Version 1.75C) is used in the PALI database (version 2.8c) [3]. Non-redundant entries with best resolution corresponding to each SCOP domain family are used for the structural alignments.

Description

More detailed information about this field from each metasource.

The database of Phylogeny and ALIgnment of homologous protein structures (PALI) contains structure-based sequence alignments and dendrograms based on information primarily derived from the structural alignments at domain level [1,2]. Protein domain decomposition as proposed by SCOP (Version 1.75C) is used in the PALI database (version 2.8c) [3]. Non-redundant entries with best resolution corresponding to each SCOP domain family are used for the structural alignments.

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Webpage:

http://pali.mbu.iisc.ernet.in/

Webpage

More detailed information about this field from each metasource.

http://pali.mbu.iisc.ernet.in/

metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

Tags:

Tags
More detailed information about this field from each metasource.

protein sequence databases
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein domain databases; protein classification
metasource: Nucleic Acid Research database catalogue
version: extracted_at: 2022-11-04T11:16:25.468657

protein sequence protein domains and classification

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Data is amalgamated and only retrieved periodically.
Some of the resources used by the system:

® FAIRsharing.org
® Bioontology/Bioportal Terms
® Nucleic Acid Research - Database
® re3data.org
® bio.tools
® PubMed - Courtesy of the U.S. National Library of Medicine